ID:

dvi_7297

 Coordinate:

scaffold_12875:16370363-16370513 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\GJ20132-cds]; exon [dvir_GLEANR_5588:6]; intron [Dvir\GJ20132-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCTTGGGCTATGCTTGAACCTCCATTCACACTGCTTAGTGGATAAAATGTTAAATTTAGAAAGTTCCAGAGATCATATGAATTGAATTCTAAGGTTAAATAAGCTAAGCATCGAGAGAAATTAATGATAGGCTAAAGTAATAAATATCTATTGGTCAATTTGTTACCTCATACTAATAAGAAGATATATATTAATTTGCAGAGCTTATCAACATCAAGAAAATCATACCATCAACAACTACATTGGCGACG
**************************************************...............((((((.(((.......))).))))..)).......((((...(((.((......)).)))...))))....(((((.((((((((((((................))))))....)))))).)))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M027
male body		 SRR060680
 9xArg_testes_total
 SRR060689
160x9_testes_total
 M047
female body
 SRR060666
160_males_carcasses_total
 SRR060670
9_testes_total
.............................................................................................................................................................................................................TATCAACATCAAGAAAATCATACCATCA.................. 28 0 1 1.00 1 0 1 0 0 0 0
............CTCGAACCTCCATTCATACCGCT........................................................................................................................................................................................................................ 23 3 1 1.00 1 1 0 0 0 0 0
.CTTCGGCTATGCTTGAGC........................................................................................................................................................................................................................................ 18 2 6 0.17 1 1 0 0 0 0 0
....................................................................................................................................................................................................AGCAGAGTTTATCAACATCGA.................................. 21 3 8 0.13 1 0 0 1 0 0 0
.................................................................................................................................................GTCTATTGGTCACTTTGCTA...................................................................................... 20 3 12 0.08 1 0 0 0 0 1 0
.........................TCACTCTGCTTAATGGAAAAA............................................................................................................................................................................................................. 21 3 12 0.08 1 0 0 0 1 0 0
..........................................................................................................AGCAATGAGAGAAATTAA............................................................................................................................... 18 2 15 0.07 1 0 0 0 0 0 1
.........................................................AGAACGTTCCAGAGATGCT............................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0

Anti-sense strand reads

CGAACCCGATACGAACTTGGAGGTAAGTGTGACGAATCACCTATTTTACAATTTAAATCTTTCAAGGTCTCTAGTATACTTAACTTAAGATTCCAATTTATTCGATTCGTAGCTCTCTTTAATTACTATCCGATTTCATTATTTATAGATAACCAGTTAAACAATGGAGTATGATTATTCTTCTATATATAATTAAACGTCTCGAATAGTTGTAGTTCTTTTAGTATGGTAGTTGTTGATGTAACCGCTGC
**************************************************...............((((((.(((.......))).))))..)).......((((...(((.((......)).)))...))))....(((((.((((((((((((................))))))....)))))).)))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M027
male body		 SRR060666
160_males_carcasses_total
........................................................................................................................................................................................................................TCTATTAGTATGGTTGTTG................ 19 2 8 0.13 1 1 0
..................................................................................................................................................................................................................TGTACCTCTATTAGTATGG...................... 19 3 19 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:16370313-16370563 - dvi_7297 GCTTGGG---------------CTATGCTTGAACCTCCATTCACACTGCTTAGTGGATAAAATGTTAAATTT----------------------AGAA--A----GTTC---CAGA-------------------------------------------------------------------------------------------------GA----------------------TCATATGAATTGAATTCTAAGGTTAAATAAGCTAAGCATCG---AGAGAA-ATTA-----A--TGA--TAGGCTAAAGTAAT---------AA----ATATCTATTG-------------------------GTCAATT---------------------------------------------------------------------------------------------------------------------TGTTACC------------------------------------------------------------------------------------T-CATACTAATAAGAAGATATATAT-TA----------------AT-TTGCAG--------------------------AGCTTATC--------------------AA---CATCAAGAAAAT------------CATACCAT----CAACA------------ACTACATTGGCGACG--
droMoj3 scaffold_6496:19019000-19019172 + GATTGAG---------------ATTT-------------------------AT-------------------------------------------AAAT------------T--------------------------------------------------------TTATTATTATAGAAGCTTGTGGGTGA--AAATTAGAAA-TTTATGA----------------------TTAAATGAATTGAATTGCAAAATTCAATAAACTGA-------------------------------AATGAA---------TTTAATC---AA----TAATTTACAACTATTTATATCA--------------------------------------------------------------------------------------------------------------------------ATT--TAAGATAATTC-----TAAAATATAAA----------------------------------------------------------------------------------------------------TA----------------AT-TTAC--------------------------------------------------------------------------------------------------------------------------TGATCTT--
droGri2 scaffold_15252:6025652-6025803 + AACAAAA---------------AAAG-------------------------AAAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAATTTG-----AGA-----TAG--AAAAGCAAA---------AA----ATA--------------------------------------------------------------------------------------------------------------------------------------------------GTTGTGAACTCATTGACTC-AAATAAA---------------------------------------------------------------------------------TAAGAGGACGGCTTG-GC-AC----------GCGGCCAA-------------------GAGAGTTGCCCGAGAGATCATC--------------------AG---CAACAA--------------------TAACAA----CAGCA------------GCAGCA---GCAGC---
droWil2 scf2_1100000004921:1792124-1792331 - GGGATTT---------------TGTG-----C-TA-----------------------------------------------------------------------TAT---T--------------------------------------------------------TTCACCCCATAGG-----------------------------------------------------------------------------------------------G------------------------------------------------------------------------------------------------------------------------TGAAATGGTATATTAAAGTCGCAAAAATGTAAAACGACAACAGCAACAACAACAATTACAACAACAA-----AAATTACAACA--ACAAAAAAAAT-----TACAACAACAA-C--------------------------------------------------------------------------------------------------AACAACAAAAATTACAACAA-CCACAA--------------------------AAATTA-C--------------------AA---CAACAAAAAAAT------------TACAACAA----CAACC------------ACAAAAATTACAACA--
dp5 XR_group6:6489033-6489182 + CGTGGAG---------------AAGA-------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTG-----A-------TGAACAATAATAAT---------GA----AGTTCCTT-------------------------TGGAGAATGTTTTGAGCAAT-------------------------------------------------------------------------------------------------------------------------------------------------GAAAAACAGCAGCAGATCGAAATTGAGT------------------------------------------------------------------------ATC---------------------------------AGCAGCAGCAGCAACAAC-----AG---CAGC--AACAAC------------AACAGCAA----CAACA------------ACAACAACAACAACA--
droPer2 scaffold_82:108698-108843 - CGTGGAG---------------AAGA-------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTG-----A-------TGAACAATAATAAT---------GA----AGTTCCTT-------------------------TGGAGAATGTTTCGAGCAAT-------------------------------------------------------------------------------------------------------------------------------------------------GAAAAACAGCAGCAGATCGAAATTGAGT------------------------------------------------------------------------ATC---------------------------------AGC--------------------AG---CAGCAA-----CAACAACAACAGCAGCAGCAG----CAACA------------ACAACAACAACAACAGC
droAna3 scaffold_13340:22910799-22910974 + AGGTGAG---------------TTGAGCTTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAA-TC-------ATTTAAAATTAA---------TTAAAATTATAA----AAATTTATTATTTTATTTAAAA--------------------------------------------------------------------------------------------------------------------------ATA--CTAAGACACCT-----TCTAATATCTA-T--------------------------------------------------------------------------------------------------TA----------------TT-TTGTA--AA--------------TTC------TTTTCTCC---------AGGTGCATGGCAA---CATTGACGAAAA------------GAGTCCAGAACTCGGCT------------ATGACAGCGAGGGCG--
droBip1 scf7180000396554:1442278-1442447 + CTAAGTG---------------CCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGAA-TTTG-----C--CAA--AAAG---TCAA------AAAAAGTAAAAACCACCTGCCG------------GTCCAA---------------------------------------------------------------------------------------------------------------------GA--GTTTACAATTCATACACAC-AGCTCAATGCAGAAGACATGTGCATAAATGAAGAGCTACAGCCAATTTAATTTGAAC-----------------------------------------------------------------------------------------------------------------------------------------------GCCGC------------CGCCCCGC----CCGCC-----------ATCGCCTTCGA--GAA--
droKik1 scf7180000302355:1282562-1282662 + TAAATAC---------------CTTA-----AATA-----------------------------------------------------------------------TTT---C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----T-----------------------------------------------------------------------------------------TTCCCGTTAGTA--------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------TATATATAT-TT----------CTTTTC-------TAAAA--------------TTC------TCCTTTTC--------------------AG---CA---------T------------CACATCAA----CAATC-----------GTGTTGAGTTACCTCG--
droFic1 scf7180000454066:1285459-1285753 + TTAATTA---------------ATTTGCTTAAATATTTAA-------------T-----GTGTTTCTTTTTTAAAGAATTATATCTTACATTTTAGAA--A----AT-CTTATTCAACTACTTTGATTTAATATCTAAGGGGTTTCCTTCTTTAAAGAGGTAACTCATAAAT--GC---------ATTAGGTCGTTAGATATTGAA---------------------------------------------------------TTTTATTAACAAGCGAGT-------------------------AGACTGAATTTAT---------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTAAACT-------------GGTTTATA-TT-TTAACTAACAAACCCTTTTCTTT-GC----------TCCTCCAA-TTCCAG--------------------------AGCTTATC--------------------AA---CATCAAGAAGAT------------AATCCCGG----CAACC------------ACAACGATTGCCACA--
droEle1 scf7180000490767:96310-96492 - TTAAATT---------------TAA-----------------------------------------------------------------------AA--T----ATTA---AAGT---------------------------------------------GCCTATTAATC--ACTTTAAG--------GTTAATTGCTTTTAAA---------------------------------------------------------CTATATTAATGTTAAAGT-----------------------------------AAT---------TA----ATTTCATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-AAAACTAATTAATTTATTTAA----T----------TTATTTAT-TTGCAGAAAATGTTTGAATAGAGATGGCCA-----------------------------------------AACTTT------------CACGACGT----GCCTC-----------GTCGTCTGCAGCAACG--
droRho1 scf7180000779999:366529-366758 + ATTGCAA---------------CTTA-------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTG-----T-------AGTCAAGTTTAAAT---------TA----AATT---T-------------------------TATAAAATGTATAGATTATA--------------------------------------------------ATA--AATTATGACTTATACAATATTCATTTATTATTTGTAACA--TTGCAAAAAGT-------------AAA----------------------------------TCTTTTTAT--------CTTTTTTTAAACCCGT-----TTT-TTTACTAATAAACCTCTTTACAT-TG-----------TCCCCAA-TTGCAG--------------------------AGCTTATC--------------------AA---CATCAAGAAGAT------------AATACCGA----CAACC------------ACCACGCTTGCCACT--
droBia1 scf7180000298389:191540-191695 - TGTTAAA---------------TTT---------------------------------------------------------------------ACAGAAAGTGAATTA---AACT---------------------------------------------CCATG---------------------------------------------------------------------------------------------TTAAATTAACCTGACATTG------------------------------------------------------------------------------------------------------------------------AGAAATCGACCCTTAGAGTAGTAAATTAGTG---------------------------------------------------------------------------AACAAA---------------------TT-----------------------------------------AGACAATA-AT-TTAAT------AATCTGCTGTGT-TC----------CTCTCCTT-----------------------------------------------------------------------------T--------------CGCCCC----CACTG------------GTCGTACAGGGGCCT--
droTak1 scf7180000415843:602440-602661 + ACAGTGTTCGCTCATTAATGTGTTAAACTT----------------------------------------------------------------AGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACTATTTAA-------AGA------------GATTCTAGAACATAAAGAA------------TTTAAATCCCTTAAAAT-------ATCCAAT-------------------------------------------------------------------------------------------------------------------------------------------------GAAAAACAAAAATTAAATTAAATTAAAAA-------------CATTAATA-TTTCTAAATAGTTAAATATGTTTTAT-AA----------ACATTAAA-TTGAAA--------------------------GGCTTAAA--------------------AA---TCGACCAAAAAT------------CACAGCAA----TGAGC-----------AGCAACAATGGCAACG--
droEug1 scf7180000409672:4617077-4617307 + ATTGAAT---------------ATTT-------------------------ATTAGAAAAAATATCTTCTTCAAAAAGCTTTTTCT---------------------------------------------------------------------------------------CATTTAAAAAACATAAAAAAAG--ATATTAGAAAGATTTTAGTTAAGTTCCATCTCCTAGAAAATCTGAAG--TCCCTTTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCTTCAATA--------TCTTT-CATACTAACAAACCTTTTTCTATATC----------TTCTCCAATTTCCAG--------------------------AGCTTATC--------------------AA---CATCAAAAAGAT------------AATCCCAA----CAACC------------ACAACAATTGCCACA--
dm3 chr3L:14018843-14018945 - TAAAATA---------------AAGA-------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATATATTA------------------------------T------------TTTTTACCGGAA--------------------------------------------------------------------------------ATTAATGATTACTTCTTTTTAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------AAATAC-----AGCAGCAAC-----AAC------------AACAACAA----CAGCA------------GCAGCAGCAGCAACA--
droSim2 2r:7165174-7165363 - CTAGAGT---------------TTT--CTTAA-------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------GTTAAACTGAAAATCTGAATAAATGTAATGTATTCCTTTCTA---TAAAATACGCTAATGAACGAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTGAATTTGTATTA----------------------------TTCTT-TTAACTAATAAGACCTTTTGTAT-TC----------TTTTCCAA-TTATAG--------------------------AACTTATC--------------------AA---CATTAAAAAGAT------------TATACCGG----CAACC------------ACAACAATTGCCACA--
droSec2 scaffold_1:4008627-4008712 - ACTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAGACCTTTTGTAT-TC----------TTTGCCAA-TTCCAG--------------------------AACTTATC--------------------AA---CATTAAAAAGAT------------TATACCGG----CAACC------------ACAACAATTGCCACA--
droYak3 2R:2743639-2743733 + TTGCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAACTAATAAGACATTTTATAT-TC----------TCCTCCAA-TTTCAG--------------------------AACTTATC--------------------AA---CATTAAAAAGAT------------CATACCGG----CAACC------------ACAACAATCGCCACA--
droEre2 scaffold_4929:16450156-16450323 - AGCACCA---------------GA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAA-AATAATAAGAGCTAG-------AAG------------AGTTAAAAGATATATATAA------------CCTTTA---------------------------------------------------------------------------------------------------------------------GA--ACTTAAAACAT-----CTCAACATTAA-AAGGAAAATATGC--------------------------------------------------------------------------------------------------ACTTTAGC-GCATAG--------------------------AAGTAATC--------------------AA---CTTGAAAAA-AC------------TGGAACTG----CAACTATAGATTATATCTATACTTTGGCCTAG--

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GCTTGGG---------------CTATGCTTGAACCTCCATTCACACTGCTTAGTGGATAAAATGTTAAATTT----------------------AGAA--A----GTTC---CAGA-------------------------------------------------------------------------------------------------GA----------------------TCATATGAATTGAATTCTAAGGTTAAATAAGCTAAGCATCG---AGAGAA-ATTA-----A--TGA--TAGGCTAAAGTAAT---------AA----ATATCTATTG-------------------------GTCAATT---------------------------------------------------------------------------------------------------------------------TGTTACC------------------------------------------------------------------------------------T-CATACTAATAAGAAGATATATAT-TA----------------AT-TTGCAG--------------------------AGCTTATC--------------------AA---CATCAAGAAAAT------------CATACCAT----CAACA------------ACTACATTGGCGACG--SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATC--------------------AA---CATCAAGAAAAT------------CATACCAT----CA................................2811.001000000000000000000000000000000100000000000000000000000000000000
droMoj3
GATTGAG---------------ATTT-------------------------AT-------------------------------------------AAAT------------T--------------------------------------------------------TTATTATTATAGAAGCTTGTGGGTGA--AAATTAGAAA-TTTATGA----------------------TTAAATGAATTGAATTGCAAAATTCAATAAACTGA-------------------------------AATGAA---------TTTAATC---AA----TAATTTACAACTATTTATATCA--------------------------------------------------------------------------------------------------------------------------ATT--TAAGATAATTC-----TAAAATATAAA----------------------------------------------------------------------------------------------------TA----------------AT-TTAC--------------------------------------------------------------------------------------------------------------------------TGATCTT--SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AACAAAA---------------AAAG-------------------------AAAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAATTTG-----AGA-----TAG--AAAAGCAAA---------AA----ATA--------------------------------------------------------------------------------------------------------------------------------------------------GTTGTGAACTCATTGACTC-AAATAAA---------------------------------------------------------------------------------TAAGAGGACGGCTTG-GC-AC----------GCGGCCAA-------------------GAGAGTTGCCCGAGAGATCATC--------------------AG---CAACAA--------------------TAACAA----CAGCA------------GCAGCA---GCAGC---SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GGGATTT---------------TGTG-----C-TA-----------------------------------------------------------------------TAT---T--------------------------------------------------------TTCACCCCATAGG-----------------------------------------------------------------------------------------------G------------------------------------------------------------------------------------------------------------------------TGAAATGGTATATTAAAGTCGCAAAAATGTAAAACGACAACAGCAACAACAACAATTACAACAACAA-----AAATTACAACA--ACAAAAAAAAT-----TACAACAACAA-C--------------------------------------------------------------------------------------------------AACAACAAAAATTACAACAA-CCACAA--------------------------AAATTA-C--------------------AA---CAACAAAAAAAT------------TACAACAA----CAACC------------ACAAAAATTACAACA--SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGTATATTAAAGTCGCAAAAA.....................................................................................................................................................................................................................................................................................................................................................2690.11100001
...................................................................................................................................................................................AGG-----------------------------------------------------------------------------------------------G------------------------------------------------------------------------------------------------------------------------TGAAATGGTATATTAAAGTCGCA.........................................................................................................................................................................................................................................................................................................................................................2790.11101000
..................................................................................................................................................................................TAGG-----------------------------------------------------------------------------------------------G------------------------------------------------------------------------------------------------------------------------TGAAATGGTATATTAAAGTCGCA.........................................................................................................................................................................................................................................................................................................................................................2890.11101000
...............................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGTATATTAAAGTCGCAAA.......................................................................................................................................................................................................................................................................................................................................................24100.10100010
dp5
CGTGGAG---------------AAGA-------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTG-----A-------TGAACAATAATAAT---------GA----AGTTCCTT-------------------------TGGAGAATGTTTTGAGCAAT-------------------------------------------------------------------------------------------------------------------------------------------------GAAAAACAGCAGCAGATCGAAATTGAGT------------------------------------------------------------------------ATC---------------------------------AGCAGCAGCAGCAACAAC-----AG---CAGC--AACAAC------------AACAGCAA----CAACA------------ACAACAACAACAACA--SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................................................................................................................................................................................................................................................TT-------------------------TGGAGAATGTTTTGAGC..............................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................AAT-------------------------------------------------------------------------------------------------------------------------------------------------GAAAAACAGCAGCAGAT.........................................................................................................................................................................................................................2011.0010010000000
...........................................................................................................................................................................................................................................................................................................................................................................................TGAGCAAT-------------------------------------------------------------------------------------------------------------------------------------------------GAAAAACAGCAGCAGAT.........................................................................................................................................................................................................................2511.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................TTTGAGCAAT-------------------------------------------------------------------------------------------------------------------------------------------------GAAAAACAGCAGCAG...........................................................................................................................................................................................................................2511.0010000000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAGCAGCAGATCGAAA....................................................................................................................................................................................................................1911.0010000001000
.........................................................................................................................................................................................................................................................................................................................................................................................TTTGAGCAAT-------------------------------------------------------------------------------------------------------------------------------------------------GAAAAACAGCAGCA............................................................................................................................................................................................................................2411.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACAGCAGCAGATCGAAATTG.................................................................................................................................................................................................................2411.0010001000000
.............................................................................................................................................................................................................................................................................................................................AT---------GA----AGTTCCTT-------------------------TGGAGAATG......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACAGCAGCAGATCGAA.....................................................................................................................................................................................................................2011.0010000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGATCGAAATTGAGT------------------------------------------------------------------------AT....................................................................................................................................2311.0010000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC------------AACAGCAA----CAACA------------ACAACA...........22200.801601600000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC------------AACAGCAA----CAACA------------ACAACAA..........23200.2040220000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC------------AACAGCAA----CAACA------------ACAAC............22200.2040013000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC------------AACAGCAA----CAACA------------ACAACAAC.........24200.2040310000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAAC-----AG---CAGC--A...............................................................19200.1530300000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC-----AG---CAGC--AACAAC------------AACAGCAA----..................................2480.1310000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC--AACAAC------------AACAGCAA----CAAC..............................22200.1020101000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---CAGC--AACAAC------------AACAGCAA----C.................................21200.1020110000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC------------AACAGCAA----CAACA------------ACAA.............19200.1020200000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAC-----AG---CAGC--AACAAC------------AACA..........................................22200.1020101000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------AACAGCAA----CAACA------------ACAACAA..........21200.1020110000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC------------AACAGCAA----CAACA------------ACAA.............21200.1020011000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA------------ACAACAACAACAACA--20200.1020200000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAACAAC-----AG---CAGC--A...............................................................25200.0510100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAAC-----AG---CAGC--AACA............................................................23200.0510100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAACAAC-----AG---CAGC--................................................................23200.0510100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAAC-----AG---CAGC--AACAA...........................................................21200.0510100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC------------AACAGCAA----CAACA------------ACAA.............20200.0510000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------AACAGCAA----CAACA------------ACAACA...........20200.0510000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA----CAACA------------ACAACAACAAC......19200.0510001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAAC-----AG---CAGC--AACAAC------------A.............................................22200.0510100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------------------AGCAGCAGCAGCAACAAC-----AG---CAG...................................................................24200.0510100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAACAAC-----AG---CAG...................................................................23200.0510100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC------------AACAGCAA----CAACA------------ACA..............20200.0510000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAC-----AG---CAGC--AACAAC------------AACA..........................................23200.0510100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAACAAC-----AG---CAGC--................................................................22200.0510010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC-----AG---CAGC--AACAAC------------AACAGC........................................21200.0510100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAA----CAACA------------ACAACAACA........20200.0510100000000
droPer2
CGTGGAG---------------AAGA-------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTG-----A-------TGAACAATAATAAT---------GA----AGTTCCTT-------------------------TGGAGAATGTTTCGAGCAAT-------------------------------------------------------------------------------------------------------------------------------------------------GAAAAACAGCAGCAGATCGAAATTGAGT------------------------------------------------------------------------ATC---------------------------------AGC--------------------AG---CAGCAA-----CAACAACAACAGCAGCAGCAG----CAACA------------ACAACAACAACAACAGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................................................................................TCCTT-------------------------TGGAGAATGTTTCGAGC..............................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGAGT------------------------------------------------------------------------ATC---------------------------------AGC--------------------AG---CA....................................................................1811.001001000
...GGAG---------------AAGA-------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTG-----A-------TGAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.........................................................................................................................................................................................................................................................................................................................AATAAT---------GA----AGTTCCTT-------------------------TGGA...........................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGT------------------------------------------------------------------------ATC---------------------------------AGC--------------------AG---CAGC..................................................................1911.001001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------------------AGC--------------------AG---CAGCAA-----CAACAACAACAGCA.............................................26200.051010000
droAna3
AGGTGAG---------------TTGAGCTTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAA-TC-------ATTTAAAATTAA---------TTAAAATTATAA----AAATTTATTATTTTATTTAAAA--------------------------------------------------------------------------------------------------------------------------ATA--CTAAGACACCT-----TCTAATATCTA-T--------------------------------------------------------------------------------------------------TA----------------TT-TTGTA--AA--------------TTC------TTTTCTCC---------AGGTGCATGGCAA---CATTGACGAAAA------------GAGTCCAGAACTCGGCT------------ATGACAGCGAGGGCG--SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CTAAGTG---------------CCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGAA-TTTG-----C--CAA--AAAG---TCAA------AAAAAGTAAAAACCACCTGCCG------------GTCCAA---------------------------------------------------------------------------------------------------------------------GA--GTTTACAATTCATACACAC-AGCTCAATGCAGAAGACATGTGCATAAATGAAGAGCTACAGCCAATTTAATTTGAAC-----------------------------------------------------------------------------------------------------------------------------------------------GCCGC------------CGCCCCGC----CCGCC-----------ATCGCCTTCGA--GAA--SizeHit CountTotal NormTotal
No Reads
droKik1
TAAATAC---------------CTTA-----AATA-----------------------------------------------------------------------TTT---C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----T-----------------------------------------------------------------------------------------TTCCCGTTAGTA--------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------TATATATAT-TT----------CTTTTC-------TAAAA--------------TTC------TCCTTTTC--------------------AG---CA---------T------------CACATCAA----CAATC-----------GTGTTGAGTTACCTCG--SizeHit CountTotal NormTotal
No Reads
droFic1
TTAATTA---------------ATTTGCTTAAATATTTAA-------------T-----GTGTTTCTTTTTTAAAGAATTATATCTTACATTTTAGAA--A----AT-CTTATTCAACTACTTTGATTTAATATCTAAGGGGTTTCCTTCTTTAAAGAGGTAACTCATAAAT--GC---------ATTAGGTCGTTAGATATTGAA---------------------------------------------------------TTTTATTAACAAGCGAGT-------------------------AGACTGAATTTAT---------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTAAACT-------------GGTTTATA-TT-TTAACTAACAAACCCTTTTCTTT-GC----------TCCTCCAA-TTCCAG--------------------------AGCTTATC--------------------AA---CATCAAGAAGAT------------AATCCCGG----CAACC------------ACAACGATTGCCACA--SizeHit CountTotal NormTotal
No Reads
droEle1
TTAAATT---------------TAA-----------------------------------------------------------------------AA--T----ATTA---AAGT---------------------------------------------GCCTATTAATC--ACTTTAAG--------GTTAATTGCTTTTAAA---------------------------------------------------------CTATATTAATGTTAAAGT-----------------------------------AAT---------TA----ATTTCATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-AAAACTAATTAATTTATTTAA----T----------TTATTTAT-TTGCAGAAAATGTTTGAATAGAGATGGCCA-----------------------------------------AACTTT------------CACGACGT----GCCTC-----------GTCGTCTGCAGCAACG--SizeHit CountTotal NormTotal
No Reads
droRho1
ATTGCAA---------------CTTA-------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTG-----T-------AGTCAAGTTTAAAT---------TA----AATT---T-------------------------TATAAAATGTATAGATTATA--------------------------------------------------ATA--AATTATGACTTATACAATATTCATTTATTATTTGTAACA--TTGCAAAAAGT-------------AAA----------------------------------TCTTTTTAT--------CTTTTTTTAAACCCGT-----TTT-TTTACTAATAAACCTCTTTACAT-TG-----------TCCCCAA-TTGCAG--------------------------AGCTTATC--------------------AA---CATCAAGAAGAT------------AATACCGA----CAACC------------ACCACGCTTGCCACT--SizeHit CountTotal NormTotal
No Reads
droBia1
TGTTAAA---------------TTT---------------------------------------------------------------------ACAGAAAGTGAATTA---AACT---------------------------------------------CCATG---------------------------------------------------------------------------------------------TTAAATTAACCTGACATTG------------------------------------------------------------------------------------------------------------------------AGAAATCGACCCTTAGAGTAGTAAATTAGTG---------------------------------------------------------------------------AACAAA---------------------TT-----------------------------------------AGACAATA-AT-TTAAT------AATCTGCTGTGT-TC----------CTCTCCTT-----------------------------------------------------------------------------T--------------CGCCCC----CACTG------------GTCGTACAGGGGCCT--SizeHit CountTotal NormTotal
No Reads
droTak1
ACAGTGTTCGCTCATTAATGTGTTAAACTT----------------------------------------------------------------AGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACTATTTAA-------AGA------------GATTCTAGAACATAAAGAA------------TTTAAATCCCTTAAAAT-------ATCCAAT-------------------------------------------------------------------------------------------------------------------------------------------------GAAAAACAAAAATTAAATTAAATTAAAAA-------------CATTAATA-TTTCTAAATAGTTAAATATGTTTTAT-AA----------ACATTAAA-TTGAAA--------------------------GGCTTAAA--------------------AA---TCGACCAAAAAT------------CACAGCAA----TGAGC-----------AGCAACAATGGCAACG--SizeHit CountTotal NormTotal
No Reads
droEug1
ATTGAAT---------------ATTT-------------------------ATTAGAAAAAATATCTTCTTCAAAAAGCTTTTTCT---------------------------------------------------------------------------------------CATTTAAAAAACATAAAAAAAG--ATATTAGAAAGATTTTAGTTAAGTTCCATCTCCTAGAAAATCTGAAG--TCCCTTTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCTTCAATA--------TCTTT-CATACTAACAAACCTTTTTCTATATC----------TTCTCCAATTTCCAG--------------------------AGCTTATC--------------------AA---CATCAAAAAGAT------------AATCCCAA----CAACC------------ACAACAATTGCCACA--SizeHit CountTotal NormTotal
No Reads
dm3
TAAAATA---------------AAGA-------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATATATTA------------------------------T------------TTTTTACCGGAA--------------------------------------------------------------------------------ATTAATGATTACTTCTTTTTAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------AAATAC-----AGCAGCAAC-----AAC------------AACAACAA----CAGCA------------GCAGCAGCAGCAACA--SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAC-----AGCAGCAAC-----AAC------------AAC...........................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC-----AGCAGCAAC-----AAC------------AACA..........................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
TAAAATA---------------AAGA-------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................1850.2010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-----AGCAGCAAC-----AAC------------AACA..........................................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAC-----AAC------------AACAACAA----CAGC..............................20200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----CAGCA------------GCAGCAGCAGCAACA--21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA----CAGCA------------GCAGCAGCAGCA.....19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC------------AACAACAA----CAGCA------------GCAGC............21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAAC-----AAC------------AACAACAA----CAGCA------------GCA..............2770.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----AGCAGCAAC-----AAC------------AACAACAA----CAGC..............................25150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC------------AACAACAA----CAGCA------------GCA..............19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAA----CAGCA------------GCAGCAGCAGCAAC...27110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAA----CAGCA------------GCAGCAGCAGCAACA--28110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------AACAACAA----CAGCA------------GCAGCAGCAGCAA....27130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAAC-----AAC------------AACAACAA----CAGCA------------GCA..............26130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAAC-----AAC------------AACAACAA----CAGC..............................24160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAA----CAGCA------------GCAGCAGCA........20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAA----CAGCA------------GCAGCAGCAGCA.....25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA----CAGCA------------GCAGCAGCAGCAA....22200.0510000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAC-----AAC------------AACAACAA----CAGC..............................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----AAC------------AACAACAA----CAGCA------------GCA..............20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA----CAGCA------------GCAGCAGC.........18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----AAC------------AACAACAA----CAGCA------------GCAGCAG..........24200.0510000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC------------AACAACAA----CAGCA------------GCAGCA...........22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----CAGCA------------GCAGCAGCAGCAAC...20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA----CAGCA------------GCAGCAGCAGCA.....20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA----CAGCA------------GCAGCAGCAGCAAC...24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC-----AAC------------AACAACAA----CAGCA------------GCAGCAG..........26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----AAC------------AACAACAA----CAGCA------------GCAGCAGCA........26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC-----AAC------------AACAACAA----CAGCA------------GC...............22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA----CAGCA------------GCAGCAGCAGCA.....21200.0510000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAA----CAGCA------------GCAGCAGCAGC......24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA----CAGCA------------GCAGCAGCAGCAA....21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAA----CAGCA------------GCAGCAGCA........21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAAC-----AAC------------AACAACAA----CA................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAAC-----AAC------------AACAAC........................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC------------AACAACAA----CAGCA------------GCA..............18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----CAGCA------------GCAGCAGCAGCA.....18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CTAGAGT---------------TTT--CTTAA-------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------GTTAAACTGAAAATCTGAATAAATGTAATGTATTCCTTTCTA---TAAAATACGCTAATGAACGAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTGAATTTGTATTA----------------------------TTCTT-TTAACTAATAAGACCTTTTGTAT-TC----------TTTTCCAA-TTATAG--------------------------AACTTATC--------------------AA---CATTAAAAAGAT------------TATACCGG----CAACC------------ACAACAATTGCCACA--SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATC--------------------AA---CATTAAAAAGAT------------TATACCGG----C.................................2813.00300000002010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATC--------------------AA---CATTAAAAAGAT------------TATACCGG----C.................................2713.00300000001200000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------------------AA---CATTAAAAAGAT------------TATACCGG----C.................................2412.00201100000000000000
...........................................................................................................................................................................................................................................................TTCTA---TAAAATACGCTAATGAACGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATC--------------------AA---CATTAAAAAGAT------------TATACCGG----CA................................2911.00100000001000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAT------------TATACCGG----CAACC------------A................2011.00100000000000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAAAAGAT------------TATACCGG----C.................................2011.00101000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAGAT------------TATACCGG----CAACC------------ACAACAA..........2911.00100000000000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC--------------------AA---CATTAAAAAGAT------------TATACCGG----C.................................2611.00100000000010000000
droSec2
ACTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAGACCTTTTGTAT-TC----------TTTGCCAA-TTCCAG--------------------------AACTTATC--------------------AA---CATTAAAAAGAT------------TATACCGG----CAACC------------ACAACAATTGCCACA--SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATC--------------------AA---CATTAAAAAGAT------------TATACCGG----C.................................2711.0010010
droYak3
TTGCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAACTAATAAGACATTTTATAT-TC----------TCCTCCAA-TTTCAG--------------------------AACTTATC--------------------AA---CATTAAAAAGAT------------CATACCGG----CAACC------------ACAACAATCGCCACA--SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
AGCACCA---------------GA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAA-AATAATAAGAGCTAG-------AAG------------AGTTAAAAGATATATATAA------------CCTTTA---------------------------------------------------------------------------------------------------------------------GA--ACTTAAAACAT-----CTCAACATTAA-AAGGAAAATATGC--------------------------------------------------------------------------------------------------ACTTTAGC-GCATAG--------------------------AAGTAATC--------------------AA---CTTGAAAAA-AC------------TGGAACTG----CAACTATAGATTATATCTATACTTTGGCCTAG--SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAA-AC------------TGGAACTG----CAACTATA..........................2411.0010000010

Generated: 05/16/2015 at 10:20 PM