ID:

dvi_7250

 Coordinate:

scaffold_12875:16125785-16125935 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\GJ20153-cds]; exon [dvir_GLEANR_5606:17]; intron [Dvir\GJ20153-in]

Repeatable elements

NameClassFamilyStrand
(CAG)nSimple_repeatSimple_repeat+
TART_DVLINEJockey+
Gypsy-29_DWil-I-intLTRGypsy+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GTTGAGACACGCCGTTTGGCGCGTCCGGTTTGGGCGTCCGACTATTCCGGGTAAGTTGCCGCACTTGAGGCGCCTCTGCGGGGCACACACAACCAGCTCGTGCTGCCATTTTGGAATGTTCCATTGTTGAAGAGTTGTTATCGTTGCTATTGCTGTTGCTGTTGCAGTTGCAGTTGTTGCTATTGTTGTTGTTGTTGTTGCTGCTGCTGCTGCTTATGCAATGTTTTGTTTGGCTGCAACAGTCGCTAGTT
**************************************************........(((((...(((....)))))))).(((((.(((((((((((.....((.....((((....))))..))....))))))........((.((.(((((.((((...)))).))))).)).))..........))))))).)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 M047
female body
 SRR060678
9x140_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 M027
male body		 M028
head
......................................................................................TCACAACCTGCTCGTGTTGCC................................................................................................................................................ 21 3 4 0.25 1 1 0 0 0 0 0
..............................TGGGCGTTCGTCTATTACGG......................................................................................................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0
.....................................................................................................................................CTTGTCATCGTTGCTATTGC.................................................................................................. 20 2 7 0.14 1 1 0 0 0 0 0
.....................................................................................................................................CTTGTCATCGTTGCTATTGCTC................................................................................................ 22 3 7 0.14 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................GTTTTGTTTAGCTGCAACCTT........ 21 3 11 0.09 1 0 1 0 0 0 0
........................................................................................................................................................................TGCAGATCTTCCTATTGTTGTTGT........................................................... 24 3 11 0.09 1 0 0 1 0 0 0
............................................................................................................................................................................................................................AAGTTTTGTTTAGCTGCAAC........... 20 2 12 0.08 1 0 0 0 1 0 0
.......................GCCTGTTTGGGCGTCGGAC................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 1
.............................................................................................................................................................................................TGTTGTTGTTGCTGCTGC............................................ 18 0 20 0.05 1 0 0 0 0 1 0

Anti-sense strand reads

CAACTCTGTGCGGCAAACCGCGCAGGCCAAACCCGCAGGCTGATAAGGCCCATTCAACGGCGTGAACTCCGCGGAGACGCCCCGTGTGTGTTGGTCGAGCACGACGGTAAAACCTTACAAGGTAACAACTTCTCAACAATAGCAACGATAACGACAACGACAACGTCAACGTCAACAACGATAACAACAACAACAACAACGACGACGACGACGAATACGTTACAAAACAAACCGACGTTGTCAGCGATCAA
**************************************************........(((((...(((....)))))))).(((((.(((((((((((.....((.....((((....))))..))....))))))........((.((.(((((.((((...)))).))))).)).))..........))))))).)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M027
male body		 SRR060686
Argx9_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060670
9_testes_total
 SRR060673
9_ovaries_total
 SRR060677
Argx9_ovaries_total
 V053
head
 V116
male body		 SRR060667
160_females_carcasses_total
 SRR060680
 9xArg_testes_total
 SRR060664
9_males_carcasses_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060678
9x140_testes_total
 SRR060681
Argx9_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 V047
embryo
 M061
embryo
 SRR060663
160_0-2h_embryos_total
 SRR060668
160x9_males_carcasses_total
 SRR060679
140x9_testes_total
 SRR060689
160x9_testes_total
..............................................................................................................................................................................................................GACGACGATTACTCTACAAA......................... 20 3 20 5.15 103 47 0 13 14 8 5 0 0 0 3 2 0 1 0 2 0 1 2 2 1 1 0 0 1
..................................................................................................................................TCTCAGCAATAGCAACTATAACT.................................................................................................. 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................CTTACAAGGTAACAGCTG........................................................................................................................ 18 2 5 0.60 3 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GACGACGATTACGCTACAAAG........................ 21 3 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................ACGACAACGACAACGTCAACGTCA............................................................................. 24 0 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................GACAACGTCAACGTCAACAA......................................................................... 20 0 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CAACGATAACAACAACAACA........................................................ 20 0 20 0.10 2 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GACGACGATTACTCTACAAAA........................ 21 3 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................ACAACGACAACGTCAACGTCAA............................................................................ 22 0 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CAACGATAACAACAACAACAA....................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................AACAACAACAACGACGACGA........................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................ACAACAACAACAACAACGACGACG............................................ 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................GAGACGCCCCGTGTTCTTTG.............................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................TAAGGAGCATTCCACGGC.............................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CAACAACAACAACAACGACGACGACGAC....................................... 28 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GACGACGACGAATATGTTCCT........................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................AACGATAACAACAACAACAAC...................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................ACAACAACAACAACAACGACGACGACGA........................................ 28 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................CAACAACAACAACGACGACGACG......................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................ACGACAACGACAACGTCAA.................................................................................. 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:16125735-16125985 - dvi_7250 GTTGAGACACGCCGTTT-----------G-GC-----GCGTCCGGT--TTGGGCGTCCGACTATTCCGGGTAAGTTGCCGCACTT------GAGGCGCCTC----------TGCGGGGCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-----CA--------------------------------------------------------------------------------ACCAGC-TCGTGCTG-CCATTTTGGAATGTTCCATTGTTGAAGAGTTGTTATCGTTGCT--------------------------------------------------ATT-----------------------------------------------------------------------------GCTGT------TGCTGTTGCAG------------------------------------------------------------------------------------------------------TTGCAGTTGT------------TGCTATTGTTGTT-----------------------------------------GTTGTTGTTGCTG---CTGC---------T--------------------GC----------------------------------------TGCTTATGCAATGTTTTGT--------TTGGC--TG--C--AAC-AGTCGCTAGTT
droMoj3 scaffold_6496:7647263-7647531 + GCAGAGACACGTCGCTT-----------G-GC-----GCGTCCGGT--GTGGGCGGCCGACTATTCCGGGTAAGTTGCCGCCCGT----TCGAGGCGCCGCCA-----CACAGCGGGCCAC----------------------------CAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-----CC--------------------------------------------------------------------------------TGCAAC-TCGGGCTGTGCATTTTGGAATGTTCCATTGTTGAAGAGTTGTTATCGTTGCT-----------------------------------------------AT--TT-----------------------------------------------------------------------------GCTGT------TGCTGTTGCCG------------------------------------------------------------------------------------------------TTGCAGTTGTTGCTGC------------TGCTACTATTATT-----------------------------------------ATTGTTGCTATTGCTGC------------C--------------------GC----------------------------------------TTCTTATGCAATATTTTGT--------TTGCT--TG--C--AAC-AGTCGCTAGTT
droGri2 scaffold_15245:12950278-12950543 - GTTGAGACGCGTCGCTT-----------G-GC-----GCGTCCGGT--TTGGGCATCCGACCTTTCCGGGTAAGTTGGAAAACTTGGGAAA-------------------GGGAGGGACGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAG-----CC--------------------------------------------------------------------------------ACCAAC-TTGGAGTAACCATTTTGGAACGTTCCATTGTTGAAGAGTTGTTATCGTTGCT-------------------------------------------------CGTTCCA--------------------------------------------------GTTTCA-GTTCCAGTTGCAGTT--------------------------------------------------------------GCAGTTGCAGATGCAGATGCTTGTG---------------------------------------CTGTTGT---------------TGTTACTC--------------------------------------------------------TTTCT-C------------A--------------------GT----------------------------------------TGCTTATGCAATGTTTTTT------TGTTGCC--TG--C--GAC-AGTTGCTAGTT
droWil2 scf2_1100000004762:3312503-3312748 - GCCGAGTCCTGTTGTTG-----------CT-TGGC--AC--------------------------------------------------------------------------------------CGCCGCAG-----------------------CATTTGAGATTCAACATG-TTCTCGTACGT------------------------------------------------------------------------ATT----------------------------------------------------------------------GTGG----------------G----------------------------------------------CATTGTTATCCGCTTCTCCGC--------------AGCA-------------------ATGCTCCAATTTTGAATTGTTCTTGTGATATCTGTTGG------------------------CCTGCTG------------CTGCT---------------------------------------------------------------------GCT--------GC---AACTGAT------G------------------------------------------------------------------------------------------------TTGTTGCTGTTGC------------TGTTGTTGCTG-----------------------------------------------------TTGTTGTTGCTGATGTTGATGAT--------------------GATGATGATGATGGCTTTTGCTACCC------------------------------------------------------T--TGC-CACTGCCAGTT
dp5 2:21904701-21904921 - GCTGCTGCACG--------------------------------------GGATAGTGCG----------------------------------------------------------------CCTGCTGCGACATCTGCGACATTTG-----------------------------------------------------------------------------------------------------------------TTGGT---------GCTGCTGAC-----------------------GC-------------------------------------------------------------AACTGTTGCTGCTGCTGCTGGTACACCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCTCT-GCTGCTGTTGTTGTTGC--------------T------G------------------------------------------------------------------------------------------------CTGCGCTTGATGATGCTGCTGCTGTTGTTGCTGCTG-----------------------------------------------------CTGTTGTTGCTGCT---------GTTGTT---G--------CTGCTGCT----------------GCTGTTGCTGCTGCGCACTC----------------TGCCTGGCT--------CCGC---------GTCG--CGCT
droPer2 scaffold_3:4686146-4686363 - GCTGCTGCACG--------------------------------------GGATAGTGCG----------------------------------------------------------------CCTGCTGCGACATCTGCGACATTTG-----------------------------------------------------------------------------------------------------------------TTGGT---------GCTGCTGAC-----------------------GC-------------------------------------------------------------AACTGTTGCTGCTGCTGCTGGTACACCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCTCT-GCTGCTGTTGTTGTTGC--------------T------G------------------------------------------------------------------------------------------------CTGCGCTTGATGATGCTGCTGCTGTTGTTGCTGCTG-----------------------------------------------------CTGTTGCTGCTGCT---------GTTGTT---G--------CTGCTG-------------------CTGTTGCTGCTGCGCACTC----------------TGCCTGGCT--------CCGC---------GTCG--CGCT
droAna3 scaffold_13117:2149345-2149595 + AGGTCGGATG----------------------------------------------GCG----------------------------------------------------------------ACTGCTGGGGCGGCAGCACCTTCTG--------C------TGTTGCTGC-----------------------------------TGCTGCTGCTTGTCCGGCG---GACTCGGCATCATCGATTCGATGGGCTTCGGTATGATGAGCATCTTGTT---------------------------------------------GG------------------------------------------------------------------------------------------------------------------------------------------------------------------CC------A----------------------CTTGCTG---------CTGCTGTTGCT------------------------------------------------------------GTTGCTGTT-----GCTGC------TGCT------G------------------------------------CTGCTGCTGGAGTTGTTGGTGGATGTG---------------------------------------CTGCGGT---------------TGCTGCTG--------------------------------------------------------CTGCT---GG---------AGCTGTTGCTGGTTG--TGCTGCTGGT----------------GCTG------------------------------------------------------C--TGC-AGCTGTTGGTT
droBip1 scf7180000396728:2210552-2210794 - GGCCGCCTCCT-----------------G-GA-----GC-------------------T----------------------------------------------------------------GCTGCTGTTGCATTT----------------------------------------------------------------------------------GCGAGGCGCGACGCAGCAGGTTCGAGGC----------A----------------------------------------------------------------------TTGTGGCTGG---GCGAGGCA--------------------------------------------------------------------------------TGCAGCG-------------------AGGGTTGC-TGC--------------T-----------G------------------------GAGTTGTTGTTGCTGCTGCTGTTGGAGT--------------------------TGCT----------------------------------GTT-----GCTGG------AGCT------G------------------------------------CTGCTGCTG------------CAGGAG---------------------------------------TTGCTGT---------------TGCTGCTGCTGCT---GTTGCTGTAGGAGTTGCTGTTGCTGCTGCTGCTGCTGG--AGTTG-----------------------------------------CTGTTG----------------------------------------------------------------------------C--TGC-AGCAGTTGCTG
droKik1 scf7180000302510:445838-446090 + GTACAGCTGGAAGCCCT-----------G-GT-----GC----AGCGCCTGGGCATGCGCCTGC---AGCTGATTG----TTGGTGGCAGC-------------------AGCAGCAGCAG---------------------CTGCCGAAAC-------------------------------------------------------------------------------------------------AGAGGCTGCGGTCT--------------------------------------------------------------------------------------------------------------------------------------------------------GCG----------------------------CCATATTGTACTGCGGC--------------------------------A----------------------TGGATTGGTGTTGATGTTGTTGTT---------------------------------------------------------------------GTT-----GCTGC------TGCT------G------------------------------------TTGCTG------------------------------------------------------CTGCACTTGTTGCTGT------------TGCTGCACCTGTT-----------------------------------------GTTGTGCCTGTTGCTGCTGCT---------GTTGAT---GCTTGACTGCTGCTGCT----------------TCTG------------------------------------------------------C--TGC-AATTGT-GGCT
droFic1 scf7180000453927:1367320-1367556 - GCTCGATTATCTCGTTG-----------G-AG-GC--GT--CC------------------------------------------------------------------------------------CTGCTG-----------------------TCCTCG--------------------------------------------------------------TT---GGGT-GGCACTCCCAGTT------------CC----------------------------------------------------------------------GGGG----------------GCAG---------------------------------------------TTGCTCCTCGCTGAGCTGC--------------GGCT---------------------------------------------------------GGTCGCCCATCATCATCTCCTCCTCGTGTTGCTGCTGCTGCTGCTGTT---------------------------------------------------------------------GCT--------GT------T------------------------------GCTGCTGTTGCTGCTGCTGCTGCTG------------CTGCTG---------------------------------------TCGCTGT---------------TGCTGA--------------------------------------------------TGTTGCTGTTGCTGCTGCT---------GTTGCT---G--------CTGCTG-------------------TTG------------------------------------------------------C--TGT-TGCTGC-TGCT
droEle1 scf7180000491232:354085-354337 - GTTGAGCCGCCATTTCC-----------GT-TGGC--------------------------------------------------GGCAGC--------GGCATTGGCC-----GCAGCAA---------------------CCTGCAAGGCAGCA--------------------------------------------------------------GCCACGCT---GACT-GGCACCATTTGTT-GCTGGGAGACGGGACCATTGCCACCCTGTTGCTGCT-----------------------GC-------------------------------------------------------------TGCTG------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCTGAAGC--------------------------TGCTGGTGTTGCT---------GATGCT-GCTGATGTTGCTGATGC--------------T------G------------------------------------------------------------CTGTTGATGCTGCTGATGTTGCTGGTGCTGCTGCTG---------------------------------------GT------G-----------------------------------TTGCTGATGC-----------------------------------TGCTGTTGGT----------------GCTG------------------------------------------------------T--TGC-TGCTGCT-GGT
droRho1 scf7180000777610:25957-26197 + GCTGGTGCACCTCGCTCTTCACCCGGAACA-GGAT--------------------------------------------------GGCCGC--------G------------------TCCCGGTTGCTG-----------------------------------------------------------------------TTCCTCAGCGCCA------GCGAGGCGGGGTGCATCAGGGCCAGGG----------------------------------------------------------------------------------------------------------------------------CCTGTGGCTGTTGCTGCTGG---------------------------------------------------------------------------------------------------------------------------------TGGTGTTGCTGCTGCTGCTGTT---------------------------------------------------------------------GCT--------G---------CT---------------------------GCT---------------GC------------TGGTGCAGGTG---------------------------------------CTGCTGC---------------TGCTGCTGCTGCT---GT--------------------------------------TGCTGCTGGTGGTG--------------------------------CTGCAGGT----------------GCGGCGACTGT-----------------------TGCGG--------GTGGTGCGG--C--GAC-AGGTGCCGCTG
droBia1 scf7180000302402:9277063-9277288 - GTTCAGGCC----ATTTTTCAGTAGAAACT-TGGC--------------------------------------------------GGC-------------------------------------CGCCTCTG-----------------------CAATT-------------------------------------------------------------------------------------------------------AT---------GCTACTA------------------------------------------------------------------------------------CAGTTGTTGTTGCTACTGCTGCTGCTCTC------------------------------------------------------------------------------------------------------------------------------------------------GTT-----------------------------------------------------GCCGTT-GTTGTTGTTGCTGCTGC--------------T------G---------------------------------------C------------TGCTA---------------------------------------CTTGCTGCGTTGTTGT------------TGCTGCCGCTGTCGTTGTTG------------CTGTTATTGTTTTTGTTGCTGG--------AGTTA-----------------------------------CTGCTGT-------------------------------------TACTGTT--AATGTTA------GTT--------TTATGCTCATC-GGTCAT-TGTT
droTak1 scf7180000415710:491925-492141 + GATTCGCTG-----ATG-----------T-GC-----AGGTCAAGTTCGTGGGCGTTGGGCTT---CGCGTAAATGGG-ATTTGTGCGTGC-------------------GGGGGGCGTGG---------------------CAGCCGCTGG-------------------------------------------------------------------------------------------------ATAGCCTGTGATG-----------------CGG---------------------------AAACCATTCATATTGCTCGTC-----------------------------------------------------------------------------------------------------------------------------------------------GGC--------------------------------------------TG---------------TTGTT-----------------------------------------------------------------------------------------------------------------------------------------GCTG---------------------------CTGCTGGTGTTGCTGTTGCTGCTGCTG---------------------------------------GT------G-----------------------------------ATTTTGGTGTTGCTGCTGC---------TGCTGTT------------------------------------------------GCGCAATC---------------------------TTGGC--CG--T--TAT-TGT------CG
droEug1 scf7180000408744:154018-154287 + GCAGCGGCACTC-------AAAAAGGAACT-GTGGTG-C----GTCTTGAT---------------------------------------------------------------------------------------------------------CGATT-------------------------------------------------------------------------------------------------------G---------------GGCCGCTGCCACCGCTGCTGCTGCACT--------------------------------------------------------------------------------------------------------------------------------------------------GGCCGCCGCTGCCGCTG--------------------------------------------------AATTGTTGCTGTTGTTGCCATTCGAATTTCCACCGCCGCCACCTTGTTGGCTCG------ACTGTGAGTTACCCTGCTTTTGGCTGCTCTTGTTGTTGC--------------T------G------------------------------------------------------------------------------------------------CTCTGTGAGTTGTTGT------------TGCTACTGCTGTT-----------------------------------------GTTGTTGCTATTGTTGCTGC---------GGCTATTGGCCGATG--AACTGC--------------------------------------------------------------------------TG--C--AAC-TGCCACCGCTT
dm3 chr2R:9927874-9928086 - GGGTTGCTG-----T-------------------------------------------T----------------------------------------------------------------GCT--------------------------------------------GC-----------------------------------TGCGCCAGATTGCCCGG----------------------------------CTGC-----------------TGG---------------------------TTGCCATTTGGACCGCCCCTTGGCGGACAA---TTGAGGAAGTTGGCCGCCGCATTGGGGTTC-----------------------------------------------------------------------------------------TGGTTGCTGAAGGGTGAGTACTGCTGCT--------------------------------------------------GCT------------------------------------------------------------GCTGTTGCTGTTGTT-----------------------G---------------------------------------C---------------------------------------------------TGCTGCTG------------------------------CTGCTGCT---------------------------------GCTGCTGC--AGTTGCTGCTG------C---------GGC-----------------ACCTGTT----------------G--------------------------------------------------C--TG--C--TGC-TGTTGTTTGTT
droSim2 x:7913906-7914124 + GCGGGGATGCGGAGCTA-----------CT-GGAGTG-C----GGCGTGAGGGGATGCGGCT----------------------------------------------------------------GCA-----------------------------------------CCTGTGCCTGGTACGC------------------------------------------------------------------------ATGATGGTAGCTGCCATATTGCG-----------------------------------------------------------------------------------------------------------------------------------------------------TGT---------------------GATTCTGGCT-------------------------------------------------------------------------CTGTTGGAGC--------------------------AGCGATTGCTGCTGGTTCGCCTGGTGTT-GCTGGTGGAGATGTTGC--------------T------GCTGGGACTGATGTTGCTGCTGCT---------------GC---------------------------------------------------TGCTG---------------------------------------CT------G-----------------------------------GTGTTG-----------------------------------------CTGTTGCT----------------GCTG------------------------------------------------------C--TGC-AGTT----GCT
droSec2 scaffold_34:270569-270806 - TGTGCAGCGCGTTTCCC-----------T-CA-----TCGTCCACC--TCG----------------------------------------------------------------------------------------------------------------------------GCCTCGTACTCATCCTCCGTTTGGAACTCCTC----------------------------------------------------------------------------------------------------------------------------GCGAACAGCGTG-----CA-GCAATCGCTCCATTCCGAAAA--------------------------------------------------------------------------------------TTGC---TGC--------------G-----------GG----------------------TGTGTTGCTGCTGCTGCTGTTGTT---------------------------------------------------------------------GCT--------GT------T------------------------------GCT---------------GC---------------------------------------------------TGCTGCAGGGGCAATTGCTGC------------TGCTGCAGTTGAT-----------------------------------------TTTGTTGCAAATA-----------------------------------TTGCAAT-------------------------------------TACAGTTGCAAC--TTTGT--------GTGCC--TG--CACCGT-GGCTAC-AGTT
droYak3 X:11898411-11898634 - GCTAGGGCGTG-----------------G-GC-----GT-------------------G----------------------------------------------------------------GCTGCTGTGGG---CGTGACTGCTG-----------------------------------------------------------------------------------------------------------------TGGGC---------GTGGCTGGC-----------------------GT-------GGG--C-------GTGCGGATGG---GCGAGGGACAGGGCGGCGGCG---------GTGTTGTTGCCGTTGCTGGGATTATT----------------------------------------------------------------------------------GCCG-----------C----------------------CGGA-----------------------------------------------------------------------------CT-GCTGCTGCTGCTGTTGC--------------T------G---------------------CT---------------GC------------------------------------------------------------------TGTTGCTGCTGTTGTTGCTGCTGCTGCTGCT---GTTG------------CTGCTGTTGC-GCTGCTGCTGG------------------------------------------------------------------------ATTG------------------------------------------------------T--TGC-TGTTGCT-GGT
droEre2 scaffold_4929:14209827-14210075 + GCTGCTGC--------------------------------------------------G----------------------------------------------------------------GCTACTGCGGCG------------G-----------------------------------------------------------------------------------------------------------------TCAGT---------GATGCGGCCGCTGCTGCTGCTGCCGCTGCACT--------------------CGAGGCGG----------------T----------------------------------------------CACTGGTGGCGGTATCTGTGGCGCACTGAACGGCGAGT-TCAGGCTG-CTGTTCAGGGA---------------------------------------------------------------------------------------------------------------------------------------------TCC-GCTGATGTTGTTGCT-----GCTGCTGCTGCT------G------------------------------------------------------------------------------------------------CTGTGGCTGTTGTTGT------------TGCTGCTGCTG--------------------------------------------CTGTGGCTGTTGCTGCTGC---------TGTTGTT------------------------------------------------GC-----------ACGTGGCGCT-CGC--------TTGGTTGGG--C--GGCAAGTAGCTGCTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GTTGAGACACGCCGTTT-----------G-GC-----GCGTCCGGT--TTGGGCGTCCGACTATTCCGGGTAAGTTGCCGCACTT------GAGGCGCCTC----------TGCGGGGCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-----CA--------------------------------------------------------------------------------ACCAGC-TCGTGCTG-CCATTTTGGAATGTTCCATTGTTGAAGAGTTGTTATCGTTGCT--------------------------------------------------ATT-----------------------------------------------------------------------------GCTGT------TGCTGTTGCAG------------------------------------------------------------------------------------------------------TTGCAGTTGT------------TGCTATTGTTGTT-----------------------------------------GTTGTTGTTGCTG---CTGC---------T--------------------GC----------------------------------------TGCTTATGCAATGTTTTGT--------TTGGC--TG--C--AAC-AGTCGCTAGTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------------GTTGTTGTTGCTG---CTGC---------.......................................................................................................................18200.051100000000000000000000000000000000000000000000000000000000000000
droMoj3
GCAGAGACACGTCGCTT-----------G-GC-----GCGTCCGGT--GTGGGCGGCCGACTATTCCGGGTAAGTTGCCGCCCGT----TCGAGGCGCCGCCA-----CACAGCGGGCCAC----------------------------CAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-----CC--------------------------------------------------------------------------------TGCAAC-TCGGGCTGTGCATTTTGGAATGTTCCATTGTTGAAGAGTTGTTATCGTTGCT-----------------------------------------------AT--TT-----------------------------------------------------------------------------GCTGT------TGCTGTTGCCG------------------------------------------------------------------------------------------------TTGCAGTTGTTGCTGC------------TGCTACTATTATT-----------------------------------------ATTGTTGCTATTGCTGC------------C--------------------GC----------------------------------------TTCTTATGCAATATTTTGT--------TTGCT--TG--C--AAC-AGTCGCTAGTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GTTGAGACGCGTCGCTT-----------G-GC-----GCGTCCGGT--TTGGGCATCCGACCTTTCCGGGTAAGTTGGAAAACTTGGGAAA-------------------GGGAGGGACGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAG-----CC--------------------------------------------------------------------------------ACCAAC-TTGGAGTAACCATTTTGGAACGTTCCATTGTTGAAGAGTTGTTATCGTTGCT-------------------------------------------------CGTTCCA--------------------------------------------------GTTTCA-GTTCCAGTTGCAGTT--------------------------------------------------------------GCAGTTGCAGATGCAGATGCTTGTG---------------------------------------CTGTTGT---------------TGTTACTC--------------------------------------------------------TTTCT-C------------A--------------------GT----------------------------------------TGCTTATGCAATGTTTTTT------TGTTGCC--TG--C--GAC-AGTTGCTAGTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GCCGAGTCCTGTTGTTG-----------CT-TGGC--AC--------------------------------------------------------------------------------------CGCCGCAG-----------------------CATTTGAGATTCAACATG-TTCTCGTACGT------------------------------------------------------------------------ATT----------------------------------------------------------------------GTGG----------------G----------------------------------------------CATTGTTATCCGCTTCTCCGC--------------AGCA-------------------ATGCTCCAATTTTGAATTGTTCTTGTGATATCTGTTGG------------------------CCTGCTG------------CTGCT---------------------------------------------------------------------GCT--------GC---AACTGAT------G------------------------------------------------------------------------------------------------TTGTTGCTGTTGC------------TGTTGTTGCTG-----------------------------------------------------TTGTTGTTGCTGATGTTGATGAT--------------------GATGATGATGATGGCTTTTGCTACCC------------------------------------------------------T--TGC-CACTGCCAGTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-----------------------------------------------------TTGTTGTTGCTGATGTTGAT.........................................................................................................................2280.13100001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTG-----------------------------------------------------TTGTTGTTGCTGATG..............................................................................................................................2190.11100001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------G------------------------------------------------------------------------------------------------TTGTTGCTGTTGC------------TGTTGTTG.....................................................................................................................................................................................................23200.05101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTGTTGC------------TGTTGTTGCTG-----------------------------------------------------TTG..........................................................................................................................................24200.05101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGAT--------------------GATGATGATGAT......................................................................................21200.05100100
dp5
GCTGCTGCACG--------------------------------------GGATAGTGCG----------------------------------------------------------------CCTGCTGCGACATCTGCGACATTTG-----------------------------------------------------------------------------------------------------------------TTGGT---------GCTGCTGAC-----------------------GC-------------------------------------------------------------AACTGTTGCTGCTGCTGCTGGTACACCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCTCT-GCTGCTGTTGTTGTTGC--------------T------G------------------------------------------------------------------------------------------------CTGCGCTTGATGATGCTGCTGCTGTTGTTGCTGCTG-----------------------------------------------------CTGTTGTTGCTGCT---------GTTGTT---G--------CTGCTGCT----------------GCTGTTGCTGCTGCGCACTC----------------TGCCTGGCT--------CCGC---------GTCG--CGCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCT-GCTGCTGTTGTTGA...............................................................................................................................................................................................................................................................................................................................................................1980.2520200000000
.....................................................................................................................................................................................................................................................................................................................................................................................TGTTGCTGCTGCTGCTGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000010000
droPer2
GCTGCTGCACG--------------------------------------GGATAGTGCG----------------------------------------------------------------CCTGCTGCGACATCTGCGACATTTG-----------------------------------------------------------------------------------------------------------------TTGGT---------GCTGCTGAC-----------------------GC-------------------------------------------------------------AACTGTTGCTGCTGCTGCTGGTACACCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCTCT-GCTGCTGTTGTTGTTGC--------------T------G------------------------------------------------------------------------------------------------CTGCGCTTGATGATGCTGCTGCTGTTGTTGCTGCTG-----------------------------------------------------CTGTTGCTGCTGCT---------GTTGTT---G--------CTGCTG-------------------CTGTTGCTGCTGCGCACTC----------------TGCCTGGCT--------CCGC---------GTCG--CGCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTGCTGCGCACTC----------------TGCCTG..................................2211.001010000
...................................................................................................................................................................................................................................................................................GCTGCTGAC-----------------------GC-------------------------------------------------------------AACTGTTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
droAna3
AGGTCGGATG----------------------------------------------GCG----------------------------------------------------------------ACTGCTGGGGCGGCAGCACCTTCTG--------C------TGTTGCTGC-----------------------------------TGCTGCTGCTTGTCCGGCG---GACTCGGCATCATCGATTCGATGGGCTTCGGTATGATGAGCATCTTGTT---------------------------------------------GG------------------------------------------------------------------------------------------------------------------------------------------------------------------CC------A----------------------CTTGCTG---------CTGCTGTTGCT------------------------------------------------------------GTTGCTGTT-----GCTGC------TGCT------G------------------------------------CTGCTGCTGGAGTTGTTGGTGGATGTG---------------------------------------CTGCGGT---------------TGCTGCTG--------------------------------------------------------CTGCT---GG---------AGCTGTTGCTGGTTG--TGCTGCTGGT----------------GCTG------------------------------------------------------C--TGC-AGCTGTTGGTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGT---------------TGCTGCTG--------------------------------------------------------CTGCT---GG---------.......................................................................................................................2160.171100000
...................................................................................................................................................G--------C------TGTTGCTGC-----------------------------------TGCTGCTGCTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2280.131100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCT------------------------------------------------------------GTTGCTGTT-----GCTGC------.................................................................................................................................................................................................................................................................................................................................................20200.051000001
...................................................................................................................................................................TGTTGCTGC-----------------------------------TGCTGCTGCTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
droBip1
GGCCGCCTCCT-----------------G-GA-----GC-------------------T----------------------------------------------------------------GCTGCTGTTGCATTT----------------------------------------------------------------------------------GCGAGGCGCGACGCAGCAGGTTCGAGGC----------A----------------------------------------------------------------------TTGTGGCTGG---GCGAGGCA--------------------------------------------------------------------------------TGCAGCG-------------------AGGGTTGC-TGC--------------T-----------G------------------------GAGTTGTTGTTGCTGCTGCTGTTGGAGT--------------------------TGCT----------------------------------GTT-----GCTGG------AGCT------G------------------------------------CTGCTGCTG------------CAGGAG---------------------------------------TTGCTGT---------------TGCTGCTGCTGCT---GTTGCTGTAGGAGTTGCTGTTGCTGCTGCTGCTGCTGG--AGTTG-----------------------------------------CTGTTG----------------------------------------------------------------------------C--TGC-AGCAGTTGCTGSizeHit CountTotal NormTotal
No Reads
droKik1
GTACAGCTGGAAGCCCT-----------G-GT-----GC----AGCGCCTGGGCATGCGCCTGC---AGCTGATTG----TTGGTGGCAGC-------------------AGCAGCAGCAG---------------------CTGCCGAAAC-------------------------------------------------------------------------------------------------AGAGGCTGCGGTCT--------------------------------------------------------------------------------------------------------------------------------------------------------GCG----------------------------CCATATTGTACTGCGGC--------------------------------A----------------------TGGATTGGTGTTGATGTTGTTGTT---------------------------------------------------------------------GTT-----GCTGC------TGCT------G------------------------------------TTGCTG------------------------------------------------------CTGCACTTGTTGCTGT------------TGCTGCACCTGTT-----------------------------------------GTTGTGCCTGTTGCTGCTGCT---------GTTGAT---GCTTGACTGCTGCTGCT----------------TCTG------------------------------------------------------C--TGC-AATTGT-GGCTSizeHit CountTotal NormTotal
No Reads
droFic1
GCTCGATTATCTCGTTG-----------G-AG-GC--GT--CC------------------------------------------------------------------------------------CTGCTG-----------------------TCCTCG--------------------------------------------------------------TT---GGGT-GGCACTCCCAGTT------------CC----------------------------------------------------------------------GGGG----------------GCAG---------------------------------------------TTGCTCCTCGCTGAGCTGC--------------GGCT---------------------------------------------------------GGTCGCCCATCATCATCTCCTCCTCGTGTTGCTGCTGCTGCTGCTGTT---------------------------------------------------------------------GCT--------GT------T------------------------------GCTGCTGTTGCTGCTGCTGCTGCTG------------CTGCTG---------------------------------------TCGCTGT---------------TGCTGA--------------------------------------------------TGTTGCTGTTGCTGCTGCT---------GTTGCT---G--------CTGCTG-------------------TTG------------------------------------------------------C--TGT-TGCTGC-TGCTSizeHit CountTotal NormTotal
No Reads
droEle1
GTTGAGCCGCCATTTCC-----------GT-TGGC--------------------------------------------------GGCAGC--------GGCATTGGCC-----GCAGCAA---------------------CCTGCAAGGCAGCA--------------------------------------------------------------GCCACGCT---GACT-GGCACCATTTGTT-GCTGGGAGACGGGACCATTGCCACCCTGTTGCTGCT-----------------------GC-------------------------------------------------------------TGCTG------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCTGAAGC--------------------------TGCTGGTGTTGCT---------GATGCT-GCTGATGTTGCTGATGC--------------T------G------------------------------------------------------------CTGTTGATGCTGCTGATGTTGCTGGTGCTGCTGCTG---------------------------------------GT------G-----------------------------------TTGCTGATGC-----------------------------------TGCTGTTGGT----------------GCTG------------------------------------------------------T--TGC-TGCTGCT-GGTSizeHit CountTotal NormTotal
No Reads
droRho1
GCTGGTGCACCTCGCTCTTCACCCGGAACA-GGAT--------------------------------------------------GGCCGC--------G------------------TCCCGGTTGCTG-----------------------------------------------------------------------TTCCTCAGCGCCA------GCGAGGCGGGGTGCATCAGGGCCAGGG----------------------------------------------------------------------------------------------------------------------------CCTGTGGCTGTTGCTGCTGG---------------------------------------------------------------------------------------------------------------------------------TGGTGTTGCTGCTGCTGCTGTT---------------------------------------------------------------------GCT--------G---------CT---------------------------GCT---------------GC------------TGGTGCAGGTG---------------------------------------CTGCTGC---------------TGCTGCTGCTGCT---GT--------------------------------------TGCTGCTGGTGGTG--------------------------------CTGCAGGT----------------GCGGCGACTGT-----------------------TGCGG--------GTGGTGCGG--C--GAC-AGGTGCCGCTGSizeHit CountTotal NormTotal
No Reads
droBia1
GTTCAGGCC----ATTTTTCAGTAGAAACT-TGGC--------------------------------------------------GGC-------------------------------------CGCCTCTG-----------------------CAATT-------------------------------------------------------------------------------------------------------AT---------GCTACTA------------------------------------------------------------------------------------CAGTTGTTGTTGCTACTGCTGCTGCTCTC------------------------------------------------------------------------------------------------------------------------------------------------GTT-----------------------------------------------------GCCGTT-GTTGTTGTTGCTGCTGC--------------T------G---------------------------------------C------------TGCTA---------------------------------------CTTGCTGCGTTGTTGT------------TGCTGCCGCTGTCGTTGTTG------------CTGTTATTGTTTTTGTTGCTGG--------AGTTA-----------------------------------CTGCTGT-------------------------------------TACTGTT--AATGTTA------GTT--------TTATGCTCATC-GGTCAT-TGTTSizeHit CountTotal NormTotal
No Reads
droTak1
GATTCGCTG-----ATG-----------T-GC-----AGGTCAAGTTCGTGGGCGTTGGGCTT---CGCGTAAATGGG-ATTTGTGCGTGC-------------------GGGGGGCGTGG---------------------CAGCCGCTGG-------------------------------------------------------------------------------------------------ATAGCCTGTGATG-----------------CGG---------------------------AAACCATTCATATTGCTCGTC-----------------------------------------------------------------------------------------------------------------------------------------------GGC--------------------------------------------TG---------------TTGTT-----------------------------------------------------------------------------------------------------------------------------------------GCTG---------------------------CTGCTGGTGTTGCTGTTGCTGCTGCTG---------------------------------------GT------G-----------------------------------ATTTTGGTGTTGCTGCTGC---------TGCTGTT------------------------------------------------GCGCAATC---------------------------TTGGC--CG--T--TAT-TGT------CGSizeHit CountTotal NormTotal
No Reads
droEug1
GCAGCGGCACTC-------AAAAAGGAACT-GTGGTG-C----GTCTTGAT---------------------------------------------------------------------------------------------------------CGATT-------------------------------------------------------------------------------------------------------G---------------GGCCGCTGCCACCGCTGCTGCTGCACT--------------------------------------------------------------------------------------------------------------------------------------------------GGCCGCCGCTGCCGCTG--------------------------------------------------AATTGTTGCTGTTGTTGCCATTCGAATTTCCACCGCCGCCACCTTGTTGGCTCG------ACTGTGAGTTACCCTGCTTTTGGCTGCTCTTGTTGTTGC--------------T------G------------------------------------------------------------------------------------------------CTCTGTGAGTTGTTGT------------TGCTACTGCTGTT-----------------------------------------GTTGTTGCTATTGTTGCTGC---------GGCTATTGGCCGATG--AACTGC--------------------------------------------------------------------------TG--C--AAC-TGCCACCGCTTSizeHit CountTotal NormTotal
No Reads
dm3
GGGTTGCTG-----T-------------------------------------------T----------------------------------------------------------------GCT--------------------------------------------GC-----------------------------------TGCGCCAGATTGCCCGG----------------------------------CTGC-----------------TGG---------------------------TTGCCATTTGGACCGCCCCTTGGCGGACAA---TTGAGGAAGTTGGCCGCCGCATTGGGGTTC-----------------------------------------------------------------------------------------TGGTTGCTGAAGGGTGAGTACTGCTGCT--------------------------------------------------GCT------------------------------------------------------------GCTGTTGCTGTTGTT-----------------------G---------------------------------------C---------------------------------------------------TGCTGCTG------------------------------CTGCTGCT---------------------------------GCTGCTGC--AGTTGCTGCTG------C---------GGC-----------------ACCTGTT----------------G--------------------------------------------------C--TG--C--TGC-TGTTGTTTGTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCTGAAGGGTGAGTACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTG------C---------GGC-----------------ACCTGTT----------------G--------------------------------------------------C--TG--..................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGAAGGGTGAGTACTGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................CGCATTGGGGTTC-----------------------------------------------------------------------------------------TGGTTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................C-----------------------------------------------------------------------------------------TGGTTGCTGAAGGGTGAGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..................................................................................................................................................................................................................................................................................................................................................A---TTGAGGAAGTTGGCCGCCGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
............................................................................................................................................................................................................................................................................................................................................CGGACAA---TTGAGGAAGTTGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................TGAGGAAGTTGGCCGCCGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGTACTGCTGCT--------------------------------------------------GCT------------------------------------------------------------GC...........................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAGGGTGAGTACTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..................................................................................................................................................................................................................................................................................................................................................................................TC-----------------------------------------------------------------------------------------TGGTTGCTGAAGGGTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
................................................................................................................................................................................................................................................................................................................................................................................GTTC-----------------------------------------------------------------------------------------TGGTTGCTGAAGGGTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTGCTGAAGGGTGAGTAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
............................................................................................................................................................................................................................................................................................................................................................................TGGGGTTC-----------------------------------------------------------------------------------------TGGTTGCTGAAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT----------------G--------------------------------------------------C--TG--C--TGC-TGTTGTTT...1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTT----------------G--------------------------------------------------C--TG--C--TGC-TGTTGTT....19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCT------------------------------------------------------------GCTGTTGCTGTTGTT-----------------------G---------------------------------------C---------------------------------------------------TGC........................................................................................................................................................................................................................................23190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCT--------------------------------------------------GCT------------------------------------------------------------GCTGTTGCTGTTGTT-----------------------G---------------------------------------C---------------------------------------------------...........................................................................................................................................................................................................................................24190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCT--------------------------------------------------GCT------------------------------------------------------------GCTGTTGCTGTTGTT-----------------------.......................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------------------------------------C---------------------------------------------------TGCTGCTG------------------------------CTGCTGCT---------------------------------GCTGC.......................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGCTGTTGTT-----------------------G---------------------------------------C---------------------------------------------------TGC........................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCT--------------------------------------------------GCT------------------------------------------------------------GCTGTTGCTGTT.................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT----------------G--------------------------------------------------C--TG--C--TGC-TGTTGTT....18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCT--------------------------------------------------GCT------------------------------------------------------------GCTGTTGCTGTTG................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTT-----------------------G---------------------------------------C---------------------------------------------------TGCTGCTG------------------------------CTGC.................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTT-----------------------G---------------------------------------C---------------------------------------------------TGCTGCTG------------------------------CTGCTGCT---------------------------------GCT.........................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGCT--------------------------------------------------GCT------------------------------------------------------------GCTGTTG......................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------------------------------------GCT------------------------------------------------------------GCTGTTGCTGTTGTT-----------------------G---------------------------------------C---------------------------------------------------...........................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------------------------------------------------GCTGTTGCTGTTGTT-----------------------G---------------------------------------C---------------------------------------------------TG.........................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCT--------------------------------------------------GCT------------------------------------------------------------GCTGTTGCTGTTGTT-----------------------.......................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT--------------------------------------------------GCT------------------------------------------------------------GCTGTTGCTGTTGTT-----------------------G---------------------------------------...............................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTGTTGTT-----------------------G---------------------------------------C---------------------------------------------------TGCTGCTG------------------------------.....................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTG------------------------------CTGCTGCT---------------------------------GCTGCTGC--..................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTT----------------G--------------------------------------------------C--TG--C--TGC-TGTTGTTTT..21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGTTGTT-----------------------G---------------------------------------C---------------------------------------------------TGCTGCTG------------------------------CTGCTGCT---------------------------------............................................................................................................................................................28200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GCGGGGATGCGGAGCTA-----------CT-GGAGTG-C----GGCGTGAGGGGATGCGGCT----------------------------------------------------------------GCA-----------------------------------------CCTGTGCCTGGTACGC------------------------------------------------------------------------ATGATGGTAGCTGCCATATTGCG-----------------------------------------------------------------------------------------------------------------------------------------------------TGT---------------------GATTCTGGCT-------------------------------------------------------------------------CTGTTGGAGC--------------------------AGCGATTGCTGCTGGTTCGCCTGGTGTT-GCTGGTGGAGATGTTGC--------------T------GCTGGGACTGATGTTGCTGCTGCT---------------GC---------------------------------------------------TGCTG---------------------------------------CT------G-----------------------------------GTGTTG-----------------------------------------CTGTTGCT----------------GCTG------------------------------------------------------C--TGC-AGTT----GCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............TA-----------CT-GGAGTG-C----GGCGTGAGGGGATGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------------------------------------CT------G-----------------------------------GTGTTG-----------------------------------------CTGTTGCT----------------G...........................................................................1960.33200000000002000000
droSec2
TGTGCAGCGCGTTTCCC-----------T-CA-----TCGTCCACC--TCG----------------------------------------------------------------------------------------------------------------------------GCCTCGTACTCATCCTCCGTTTGGAACTCCTC----------------------------------------------------------------------------------------------------------------------------GCGAACAGCGTG-----CA-GCAATCGCTCCATTCCGAAAA--------------------------------------------------------------------------------------TTGC---TGC--------------G-----------GG----------------------TGTGTTGCTGCTGCTGCTGTTGTT---------------------------------------------------------------------GCT--------GT------T------------------------------GCT---------------GC---------------------------------------------------TGCTGCAGGGGCAATTGCTGC------------TGCTGCAGTTGAT-----------------------------------------TTTGTTGCAAATA-----------------------------------TTGCAAT-------------------------------------TACAGTTGCAAC--TTTGT--------GTGCC--TG--CACCGT-GGCTAC-AGTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................................................................................CTCCATTCCGAAAA--------------------------------------------------------------------------------------TTGC---TGC--------------G-----------G........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001
droYak3
GCTAGGGCGTG-----------------G-GC-----GT-------------------G----------------------------------------------------------------GCTGCTGTGGG---CGTGACTGCTG-----------------------------------------------------------------------------------------------------------------TGGGC---------GTGGCTGGC-----------------------GT-------GGG--C-------GTGCGGATGG---GCGAGGGACAGGGCGGCGGCG---------GTGTTGTTGCCGTTGCTGGGATTATT----------------------------------------------------------------------------------GCCG-----------C----------------------CGGA-----------------------------------------------------------------------------CT-GCTGCTGCTGCTGTTGC--------------T------G---------------------CT---------------GC------------------------------------------------------------------TGTTGCTGCTGTTGTTGCTGCTGCTGCTGCT---GTTG------------CTGCTGTTGC-GCTGCTGCTGG------------------------------------------------------------------------ATTG------------------------------------------------------T--TGC-TGTTGCT-GGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC------------------------------------------------------------------TGTTGCTGCTGTTGTTGCTGCTGCT...................................................................................................................................................................................................27200.05100000000001
droEre2
GCTGCTGC--------------------------------------------------G----------------------------------------------------------------GCTACTGCGGCG------------G-----------------------------------------------------------------------------------------------------------------TCAGT---------GATGCGGCCGCTGCTGCTGCTGCCGCTGCACT--------------------CGAGGCGG----------------T----------------------------------------------CACTGGTGGCGGTATCTGTGGCGCACTGAACGGCGAGT-TCAGGCTG-CTGTTCAGGGA---------------------------------------------------------------------------------------------------------------------------------------------TCC-GCTGATGTTGTTGCT-----GCTGCTGCTGCT------G------------------------------------------------------------------------------------------------CTGTGGCTGTTGTTGT------------TGCTGCTGCTG--------------------------------------------CTGTGGCTGTTGCTGCTGC---------TGTTGTT------------------------------------------------GC-----------ACGTGGCGCT-CGC--------TTGGTTGGG--C--GGCAAGTAGCTGCTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGTTGTTGCT-----GCTGCT...................................................................................................................................................................................................................................................................................................................................................19190.0511000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGCTGC---------TGTTGTT------------------------------------------------GC-----------...................................................20200.0510001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGCTGCTGC---------TGTTGT.................................................................................................................18200.0511000000

Generated: 05/16/2015 at 09:38 PM