ID:

dvi_725

 Coordinate:

scaffold_10324:385490-385551 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dvir_GLEANR_15380:2]; CDS [Dvir\GJ15078-cds]; exon [dvir_GLEANR_15380:1]; CDS [Dvir\GJ15078-cds]; intron [Dvir\GJ15078-in]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------####################################--------------
GAGCCATCGACGTCAGCTCGAACCTCATCTTCGAGTCCATCAACAAAGGCGTAAGTTTTGTTGCTTATGTAAGACCGAATTGTGCACTCAAGAACGTATTTTGCTATTACAGAAACTCTGGAAGGACATCAAGGGCAAATATGAATAGACCAGCGGTTCCAA
**************************************************......((.((....((.((((((.((..(((......)))...))..))))))))..))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M061
embryo
 SRR060672
9x160_females_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060665
9_females_carcasses_total
 M027
male body		 M028
head
 SRR060664
9_males_carcasses_total
 SRR060668
160x9_males_carcasses_total
 GSM1528803
follicle cells		 V053
head
 V116
male body		 SRR060659
Argentina_testes_total
 SRR060671
9x160_males_carcasses_total
 SRR060679
140x9_testes_total
 SRR060681
Argx9_testes_total
 SRR060683
160_testes_total
 V047
embryo
 SRR060666
160_males_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060689
160x9_testes_total
............................................................................................................AGGCAAACTCTGGAAGGACATC................................ 22 3 2 10.00 20 1 0 3 1 1 0 2 8 0 1 0 1 1 0 0 0 0 0 0 0 0 1
...................GAACCTCATCTTCGAGTCCAT.......................................................................................................................... 21 0 1 5.00 5 1 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................CGAACCTCATCTTCGAGTCCAT.......................................................................................................................... 22 0 1 5.00 5 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........ACGTCAGCTCGAACCTCATC..................................................................................................................................... 20 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................AGGCAAACTCTGGAAGGACATCA............................... 23 3 2 3.50 7 4 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................CGAACCTCATCTTCGAGTCCA........................................................................................................................... 21 0 1 3.00 3 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........GACGTCAGCTCGAACCTCA....................................................................................................................................... 19 0 1 3.00 3 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...CCATCGACGTCAGCTCGAACC.......................................................................................................................................... 21 0 1 3.00 3 1 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................AGGCAAACTCTGGAAGGACA.................................. 20 3 4 2.50 10 4 0 0 0 4 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............GCTCGAACCTCATCTTCGAGTCCATCAAC...................................................................................................................... 29 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
....CATCGACGTCAGCTCGAACCTCATCTT................................................................................................................................... 27 0 1 2.00 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................AGGACATCAAGGGCAAAT...................... 18 0 1 2.00 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........GTCAGCTCGAACCTCATCTTCGAGTCC............................................................................................................................ 27 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GAGCCATCGACGTCAGCT................................................................................................................................................ 18 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0
........GACGTCAGCTCGAACCTCATCT.................................................................................................................................... 22 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................CGAACCTCATCTTCGAGTCCATC......................................................................................................................... 23 0 1 2.00 2 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......TCGACGTCAGCTCGAACCT......................................................................................................................................... 19 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................ATCTTCGAGTCCATCAACA..................................................................................................................... 19 0 1 2.00 2 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....CATCGACGTCAGCTCGAACCTCATC..................................................................................................................................... 25 0 1 2.00 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.............................................................................................................GGCAAACTCTGGAAGGACATCAAG............................. 24 3 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GAATAGACCAGCGGTTCCAA 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....ATCGACGTCAGCTCGAACCTCATCTT................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GGAAACTCTGGAAGGACATCA............................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.ATCCATCGACGTCAGCTCGAACCTC........................................................................................................................................ 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................CGAACCTCATCTTCGAGTCCATCAAC...................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................TCTTCGAGTCCATCAACAA.................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TCAAGGGCAAATATGAATAGACC........... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CATCAAGGGCAAATATGAATAGACGAGC........ 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................CGAACCTCATCTTCGAGTCC............................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................GCAAACTCTGGAAGGACATCAAGGGC.......................... 26 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................GACATCAAGGGCAAATGTGA.................. 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................ATCAAGGGCAAATATGAATAGACCAGC........ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........ACGTCAGCTCGAACCTCATCTTCGAGTCC............................................................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................AGGCAAACTCTGGAAGGACATCAAG............................. 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....ATCGACGTCAGCTCGAACCTCATC..................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........GTCAGCTCGAAACTCATCT.................................................................................................................................... 19 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......TCGACGTCAGCTCGAACCTCATC..................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......CGACGTCAGCTCGAACCTCATCTTCG................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................AAGGGCAAATATGAATAGACCAGC........ 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................TTCGAGTCCATCAACAAAGGCA............................................................................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................AAGGGCAAATATGAATAGACC........... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................AGGCAAACTCTGGAAGGACATCAAGGGCA......................... 29 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................AACTCTGGAAGGACATCAAG............................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......TCGACGTCAGCTCGAACC.......................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................AACTCTGGAAGGACATCAAA............................. 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................CGAACCTCATCTTCGAGTCCATCAA....................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........GACGTCAGCTCGAACCTCATC..................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......CGACGTCAGCTCGAACCTCATCTTCGC................................................................................................................................ 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TACAGAAACTCTGGAAGGAC................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........GTCAGATCGAACCTCATCTTCGAGTC............................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................GACATCAAGGGCAAATATGAATAGACCA.......... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........TGTCAGCTCGAACCTCATCTTCGAGTCC............................................................................................................................ 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................TCATCTTCGAGTCCATCAACA..................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................AACTGTGGAAGGACATCAAGGG........................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................CGAACCTCATCTTCGAGTC............................................................................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................CTCATCTTCGAGTCCATCAACA..................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................CGAACCTCATCTTCGAGTCCCT.......................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................GGCAAACTCTGGAAGGACATCAA.............................. 23 3 2 1.00 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........GGCAGCTCGAACCTCATCTT................................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................AGGCAAACTCTGGAAGGACATCAA.............................. 24 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GCAAACTCTGGAAGGACATCAAG............................. 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................CAAACTCTGGAAGGACATCA............................... 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................GGACATCAAGGGCAAATATGAAT................ 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................GAACCTCATCTTCGAGTCCATCAA....................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................TCTTCGAGTCCATCAACAAA................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................GAACCTCATCTTCGAGTCCATCAAC...................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................ATCAAGGGCAAATATGAA................. 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................TCGAACCTCATCTTCGAGTCCATCAA....................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................GGGCAAATATGAATAGACC........... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............TCAGCTCGAACCTCATCTTCGA................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.......CGACGTCAGCTCGAACCTCATCTTCGA................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................CAAACTCTGGAAGGACATCAAGGGC.......................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................GACATCAAGGGCAAATATGAAT................ 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................TCGAACCTCATCCTCGTCTCCA........................................................................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................ACATCAAGGGCAAATATGAATAGACC........... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........ACGTCAGCTCGAACCTCATCTTCGAGTC............................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TACAGAAACTCTGGAAGGACA.................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................GGCAAACTCTGGAAGGACATCAAGGGC.......................... 27 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......CGACGTCAGCTCGAACCTC........................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................AGGGAAACTCTGGAAGGACATCA............................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................AGCTTCGAGTCCATCAACAAAGGC................................................................................................................ 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GCAAACTCTGGAAGGACA.................................. 18 2 3 0.67 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................AGGCAAACTCTGGAAGGACAT................................. 21 3 4 0.50 2 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GCAAACTCTGGAAGGACATCA............................... 21 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................AGGCAAACTCTGGAAGGAC................................... 19 3 16 0.25 4 1 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................CTGATGGAAGACCGAATT................................................................................. 18 2 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...................................TCCATCAACAAGGGAGGAA............................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CTCGGTAGCTGCAGTCGAGCTTGGAGTAGAAGCTCAGGTAGTTGTTTCCGCATTCAAAACAACGAATACATTCTGGCTTAACACGTGAGTTCTTGCATAAAACGATAATGTCTTTGAGACCTTCCTGTAGTTCCCGTTTATACTTATCTGGTCGCCAAGGTT
**************************************************......((.((....((.((((((.((..(((......)))...))..))))))))..))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M027
male body		 V116
male body		 M028
head
 M061
embryo
 SRR060658
140_ovaries_total
 SRR060678
9x140_testes_total
 SRR060681
Argx9_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060672
9x160_females_carcasses_total
 V047
embryo
 SRR060662
9x160_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
...................CTTGGAGTAGAAGCTCAGGTA.......................................................................................................................... 21 0 1 2.00 2 0 0 0 0 1 0 0 1 0 0 0 0
............................................................................................................................CTGTAGTTCCCGTTTATACTT................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................ACGATAATGTCTTTGAGA........................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................TACTTATCTGGTCGCCAAGGT. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..........................................TGTTTCCGCATTCAAAACAACGAATAC............................................................................................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.TCGGTAGCTGCAGTCGAGCTTGG.......................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................TGGAGAAGAAACTCAGGTAG......................................................................................................................... 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.TCGGTAGCTGCAGTCGAGCT............................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................TTGGAGTAGAAGCTCAGGTAG......................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................CCTGGAGAAGAAACTCAGGTA.......................................................................................................................... 21 3 3 0.67 2 0 0 0 0 0 0 0 0 2 0 0 0
........CGGCAGTCGCCCTTGGAGTA...................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0
.......................GACTAGAACCTCAGGTAG......................................................................................................................... 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
...........CAGTCGACCTTGGAGAAG..................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0
.............................................................ACGAATAAACTCTGGCATAA................................................................................. 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_10324:385440-385601 + dvi_725 GAGCCATCGACGTCAGCTCGAACCTCATCTTCGAGTCCATCAACAAAGGCGTAAGTT--------TTG--TTGCTTATGTAAGACCGAAT-TGTGCAC--TCA----A-GAACGTA--------T-T-T----TGCTATTACAGAAACTCTGGAAGGACATCAAGGGCAAATATGAATAGACCAGCGGTTC--CAA
droMoj3 scaffold_6496:2196957-2197117 + GCGCCATTGATGTCACTTCGAACTTGATCTTCGACAGCATCAACAAAGGCGTAAGTGTTTT----T--TGTTGCTTATGTAATAAAT--T----TGTG--CAAATGAAATGTT-----------A-TTT-C--TCCTGTTGCAGAAACAATGGAAGGACATCAAGGGCAAGTACGAATAGACGAGCGG------TT
droGri2 scaffold_15245:15240677-15240846 - GCGCCATCGATGTCAGCTCAAACACGATCTACGACACCATCAACAAAGGCGTAAGTT--------T--TCCCGCTTATGTAAGACTAAAT-TG---TG--C------A-TTTTGAGAACGTCTCGTTTT-T--TTTTCTTCTAGAAACTCTGGAAGGACATCAAGGGCAAATATGAATAGATCGACGCTACTTCAG
droWil2 scf2_1100000004513:498879-499047 + GGGCCGTTGATGTCAGCGCCAACGCCATTTGGGAATCCATCAACAAAGGCGTAAGTATTTCCACTTGCT-TGGCTTATGTAATCGAAA-ATAACT-------A----A-TAACAAA------TCCTTTT-G--ATTTCATACAGAAACTGTGGAAGGACATCAAGGGCAAATACGAATAAG----CGCTATAAATA
dp5 3:11073547-11073702 + GTGCCATCGATGTCTCGTCCACTGCCCTGTTCGAGTCCATCAACAAAGGCGTAAGTTG-------GACT-CCTCTTATGTAAGACGAG-TT----GGGAATAAACGAATTACT-----------CTTTT-T--TTCGCTTGCAGAAACTCTGGAAGGACATCAAGAGCAAATACGAATAGG-------------CG
droPer2 scaffold_4:6392507-6392661 + GTGCCATCGATGTCTCGTCCACTGCCCTGTTCGAGTCCATCAACAAAGGCGTAAGTTG-------CACT-CCTCTTATGTAAGACGAG-TT----GGGAATAAACGAATTACT-----------C-TTT-T--TTCGCTTGCAGAAACTCTGGAAGGACATCAAGAGCAAATACGAATAGG-------------CG
droAna3 scaffold_13266:8496437-8496582 + GCGCCGTGGACGTCAGCTCGAACCTGATCTTCGAGACCGTCAACAAAGGCGTAAGTA--------G--TCACTATTATGTAAGAAAAA---TCCTGGC--TAA----AATAT---A--------C-T-T-T--TCTGATTATAGAAACTCTGGAAGGACATCAAGGGCAAATACGAATAAA---------------
droBip1 scf7180000396759:308039-308184 - GCGCCGTGGACGTCAGCTCGAACTTGATCTTCGAGTCCGTCAACAAAGGCGTAAGTA--------G--TCGCACTTATGTAAGAGAAC---TCCTGGC--TAA----AATATT-----------C-C-T-T--TTTAACCGCAGAAACTCTGGAAGGACATCAAGGGCAAATACGAATAAA---------------
droKik1 scf7180000302476:1402265-1402418 - GCGCCCTCGATGTGAGCTCAGTGGCGATCTTTGAGAGCGTCAACAAAGGCGTAAGTG--------C--T-CTGCTTATGTAAGAGGAA-T-TCCTTGC--TAA----A-TATCGAA--------T-T-TT---CCCCCTTGCAGAAGCTCTGGAAGGACATTAAGGCCAAATATGAATAAATT---------AGTA
droFic1 scf7180000454066:631736-631891 + GCGCCATCGATGTCACATCGGTTGCGATCTTCGAGGGAATCAACAAAGGCGTAAGTA--------ATAA-GCTCTTATGTAACAGTAG-ATTCCTGGC--TAA----A-TATTGAA--------T-T-TTCC-TTCGCTTGCAGAAACTCTGGAAGGACATCAAGGGCAAATACGAATAAATC---------A---
droEle1 scf7180000491215:399192-399350 + GCGCCATCGATGTCACATCGACTACGATTTTCGAGAGCGTCAACAAAGGCGTAAGTA--------CCAA-CCGCTTATGTAAGAGTAG-ATTCCTGGC--CAA----A-TATTGAC--------T-T-TTCC-CCCGTTTGCAGAAACTCTGGAAGGACATCAAGGGCAAATACGAATAAATC---------ATAA
droRho1 scf7180000779957:248322-248478 + GCGCCATCGATGTCACATCGAACACGATCTTCGATACCGTCAACAAAGGCGTAAGTA--------TCAA-CCGCTTATGTAAGATGAG-TTTCCTGGT--CAA----A-TATTGAA--------T-T-TTTCACTCGCTTGCAGAAACTCTGGAAGGACATCAAAGCCAAATACGAATAAATC------------A
droBia1 scf7180000302291:1372027-1372185 + GCGCCATCGATGTCACGTCGGTCGCGATCTTCGAGGGCATCAACAAAGGCGTAAGTA--------TAGT-CCTCTTATGTAACTCGGG-TTTCCTGGC--CAA----A-TATTGAG--------T-T-TTCC-CCCCTTTTCAGAAACTCTGGAAGGACATCAAGGGCAAATACGAATAGATC---------ACCA
droTak1 scf7180000415762:496266-496424 + GCGCCATCGATGTCACGTCGGTTGCGATCTTCGAGGGCATCAACAAAGGCGTAAGTG--------CAAT-CCGCTTATGTAATACCAG-TTTCCTGGC--CAA----A-TACTAAG--------T-T-CCTT-CCCCCTTGCAGAAGCTCTGGAAGGACATCAAGGGCAAATACGAATAAACT---------ACCA
droEug1 scf7180000409672:3982862-3983012 + GCGCCATTGATGTCACGTCGGTGGCGATCTTTGAGAGCGTCAACAAAGGCGTAAGTA--------TAAT-GCTCTTATGTAAGAGGAG-TTTCCTATC--CAA----A-TATTTCA--------T-T-TTAT-CCTTTTTCTAGAAACTCTGGAAGGACATCAAGGGCAAATACGAATA-----------------
dm3 chr2R:8644694-8644852 - GCGCTCTCGATGTCACGTCGGTTGCGATTTTCGAGGGCATCAACAAAGGCGTAAGTA--------TAAT-CCTGTTATGTAAGCAAAG-TTTCCTGGC--CAA----A-TCTCAAG--------A-T-TTCC-CCGCTTTGCAGAAACTCTGGAAGGACATCAAGGGCAAATACGAATAAATT---------AACA
droSim2 2r:9346159-9346317 - GCGCTCTCGATGTCACGTCGGTTGCGATTTTCGAGGGCATCAACAAAGGCGTAAGTA--------TAAT-CCTGTTATGTAAGCAAAG-TTTCCTGGC--CAA----A-TCTCAAG--------A-T-TTCC-CCGCTTTGCAGAAACTCTGGAAGGACATCAAGGGCAAATACGAATAAATC---------AACA
droSec2 scaffold_1:6182698-6182856 - GCGCTCTCGATGTCACGTCGGTTGCGATTTTCGAGGGCATCAACAAAGGCGTAAGTA--------TGAT-CCTCTTATGTAAGCAAAG-TTTCCTTGC--CAA----A-TCTCAAG--------A-T-TTCC-CCGCTTTGCAGAAACTCTGGAAGGACATTAAGGGCAAATACGAATAAATC---------AACA
droYak3 2R:8305073-8305231 + GCGCCATCGATGTCACGTCGGTTGCGATTTTCGAGGGCATCAACAAAGGCGTAAGTA--------AAAT-CCTATTATGTAAGCAAAG-TTTCCTGGC--CAA----A-TCTCAAG--------T-T-TTGC-CTTCTTTGCAGAAACTCTGGAAGGACATCAAGGGCAAATACGAATAAATC---------ACCA
droEre2 scaffold_4845:17163827-17163984 + GCGCCATCGATGTCACGTCGGTTGCGATTTTCGAGGGCGTCAACAAAGGCGTAAGTA--------TAAT-CCCATTATGTAAGCAAAG-TTTCCTGGC--CAA----A-TCTCAAG--------T-T-TTT--CCCCTTTGCAGAAACTCTGGAAGGACATCAAGGGCAAATACGAATAAATC---------ACCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GAGCCATCGACGTCAGCTCGAACCTCATCTTCGAGTCCATCAACAAAGGCGTAAGTT--------TTG--TTGCTTATGTAAGACCGAAT-TGTGCAC--TCA----A-GAACGTA--------T-T-T----TGCTATTACAGAAACTCTGGAAGGACATCAAGGGCAAATATGAATAGACCAGCGGTTC--CAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................GAACCTCATCTTCGAGTCCAT............................................................................................................................................................2115.005001000000000001101010000000000000000000000000000000000000000000
..................CGAACCTCATCTTCGAGTCCAT............................................................................................................................................................2215.005003100000000000000000000000001000000000000000000000000000000000
.........ACGTCAGCTCGAACCTCATC.......................................................................................................................................................................2014.004004000000000000000000000000000000000000000000000000000000000000
..................CGAACCTCATCTTCGAGTCCA.............................................................................................................................................................2113.003000000000000000201000000000000000000000000000000000000000000000
........GACGTCAGCTCGAACCTCA.........................................................................................................................................................................1913.003001000000000000000010100000000000000000000000000000000000000000
...CCATCGACGTCAGCTCGAACC............................................................................................................................................................................2113.003021000000000000000000000000000000000000000000000000000000000000
...............GCTCGAACCTCATCTTCGAGTCCATCAAC........................................................................................................................................................2912.002000000000000000000000000000000000000000000000000000000000000002
....CATCGACGTCAGCTCGAACCTCATCTT.....................................................................................................................................................................2712.002000000000000000010000010000000000000000000000000000000000000000
..........................................................................................................................................................AGGACATCAAGGGCAAAT........................1812.002000000000000000000000110000000000000000000000000000000000000000
...........GTCAGCTCGAACCTCATCTTCGAGTCC..............................................................................................................................................................2712.002000100000000000000000010000000000000000000000000000000000000000
GAGCCATCGACGTCAGCT..................................................................................................................................................................................1812.002000000000200000000000000000000000000000000000000000000000000000
........GACGTCAGCTCGAACCTCATCT......................................................................................................................................................................2212.002001000000000000100000000000000000000000000000000000000000000000
..................CGAACCTCATCTTCGAGTCCATC...........................................................................................................................................................2312.002000100000000000000100000000000000000000000000000000000000000000
......TCGACGTCAGCTCGAACCT...........................................................................................................................................................................1912.002200000000000000000000000000000000000000000000000000000000000000
..........................ATCTTCGAGTCCATCAACA.......................................................................................................................................................1912.002000000000000000001000000000000000000000000000000000000000000100
....CATCGACGTCAGCTCGAACCTCATC.......................................................................................................................................................................2512.002000000000000000001000000000000001000000000000000000000000000000
..............................................................................................................................................................................GAATAGACCAGCGGTTC--CAA2011.001001000000000000000000000000000000000000000000000000000000000000
.....ATCGACGTCAGCTCGAACCTCATCTT.....................................................................................................................................................................2611.001000000000000001000000000000000000000000000000000000000000000000
..................CGAACCTCATCTTCGAGTCCATCAAC........................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...........................TCTTCGAGTCCATCAACAA......................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................TCAAGGGCAAATATGAATAGACC.............2311.001001000000000000000000000000000000000000000000000000000000000000
..................CGAACCTCATCTTCGAGTCC..............................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................ATCAAGGGCAAATATGAATAGACCAGC..........2711.001000100000000000000000000000000000000000000000000000000000000000
.........ACGTCAGCTCGAACCTCATCTTCGAGTCC..............................................................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
.....ATCGACGTCAGCTCGAACCTCATC.......................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
......TCGACGTCAGCTCGAACCTCATC.......................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.......CGACGTCAGCTCGAACCTCATCTTCG...................................................................................................................................................................2611.001000000000000001000000000000000000000000000000000000000000000000
..................................................................................................................................................................AAGGGCAAATATGAATAGACCAGC..........2411.001000000000000000000100000000000000000000000000000000000000000000
.............................TTCGAGTCCATCAACAAAGGCA.................................................................................................................................................2211.001000000000000000000010000000000000000000000000000000000000000000
..................................................................................................................................................................AAGGGCAAATATGAATAGACC.............2111.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................AACTCTGGAAGGACATCAAG...............................2011.001000000000000000001000000000000000000000000000000000000000000000
......TCGACGTCAGCTCGAACC............................................................................................................................................................................1811.001100000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................AACTCTGGAAGGACATCAAA...............................2011.001000000000000000000000000000000000100000000000000000000000000000
..................CGAACCTCATCTTCGAGTCCATCAA.........................................................................................................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
........GACGTCAGCTCGAACCTCATC.......................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.......CGACGTCAGCTCGAACCTCATCTTCGC..................................................................................................................................................................2711.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................TACAGAAACTCTGGAAGGAC.....................................2011.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................GACATCAAGGGCAAATATGAATAGACCA............2811.001000000000000000000100000000000000000000000000000000000000000000
........................TCATCTTCGAGTCCATCAACA.......................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
..................CGAACCTCATCTTCGAGTC...............................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
.......................CTCATCTTCGAGTCCATCAACA.......................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................GGACATCAAGGGCAAATATGAAT..................2311.001000000000000000000000000000000010000000000000000000000000000000
...................GAACCTCATCTTCGAGTCCATCAA.........................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
...........................TCTTCGAGTCCATCAACAAA.....................................................................................................................................................2011.001000000000000000000000010000000000000000000000000000000000000000
...................GAACCTCATCTTCGAGTCCATCAAC........................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................ATCAAGGGCAAATATGAA...................1811.001000000000000000100000000000000000000000000000000000000000000000
.................TCGAACCTCATCTTCGAGTCCATCAA.........................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000001
....................................................................................................................................................................GGGCAAATATGAATAGACC.............1911.001000100000000000000000000000000000000000000000000000000000000000
............TCAGCTCGAACCTCATCTTCGA..................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000001000
.......CGACGTCAGCTCGAACCTCATCTTCGA..................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000001000
............................................................................................................................................................GACATCAAGGGCAAATATGAAT..................2211.001000000000000000100000000000000000000000000000000000000000000000
.............................................................................................................................................................ACATCAAGGGCAAATATGAATAGACC.............2611.001001000000000000000000000000000000000000000000000000000000000000
.........ACGTCAGCTCGAACCTCATCTTCGAGTC...............................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................TACAGAAACTCTGGAAGGACA....................................2111.001000000000000000000000000000000010000000000000000000000000000000
.......CGACGTCAGCTCGAACCTC..........................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
GCGCCATTGATGTCACTTCGAACTTGATCTTCGACAGCATCAACAAAGGCGTAAGTGTTTT----T--TGTTGCTTATGTAATAAAT--T----TGTG--CAAATGAAATGTT-----------A-TTT-C--TCCTGTTGCAGAAACAATGGAAGGACATCAAGGGCAAGTACGAATAGACGAGCGG------TTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................CATCAAGGGCAAGTACGAATA.................2114.004200002
............................................................................................................................................................GACATCAAGGGCAAGTACGAATA.................2314.004200002
...............................................................................................................................................................ATCAAGGGCAAGTACGAATA.................2013.003200001
..................CGAACTTGATCTTCGACAGCATC...........................................................................................................................................................2312.002000002
.........................................................................................................................................................................AGTACGAATAGACGAGCGG------T.2011.001000100
.................................................................................................................................................................CAAGGGCAAGTACGAATAGACG.............2211.001000001
...........GTCACTTCGAACTTGATCTT.....................................................................................................................................................................2011.001100000
..................................................................................................................................................................AAGGGCAAGTACGAATAGACGAGCG.........2511.001100000
...................GAACTTGATCTTCGACAGCA.............................................................................................................................................................2011.001000001
..................................................................................................................................................................AAGGGCAAGTACGAATAGAC..............2011.001000001
..............ACTTCGAACTTGATCTTCG...................................................................................................................................................................1911.001000100
.....................................................................................................................................................................GGCAAGTACGAATAGACG.............1811.001100000
.........................GATCTTCGACAGCATCAAC........................................................................................................................................................1911.001100000
........GATGTCACTTCGAACTTGAT........................................................................................................................................................................2011.001100000
................................................................................................................................................................TCAAGGGCAAGTACGAATA.................1911.001000001
.....ATTGATGTCACTTCGAACTT...........................................................................................................................................................................2011.001100000
...........GTCACTTCGAACTTGATCTTCGACAGC..............................................................................................................................................................2711.001100000
....................................................................................................................................................................GGGCAAGTACGAATAGAC..............1811.001100000
....................................................................................................................................................AATGGAAGGACATCAAGGGCA...........................2111.001000001
...........GTCACTTCGAACTTGATCTTCGAC.................................................................................................................................................................2411.001100000
........................................................................................................................................................................AAGTACGAATAGACGAGCGG------T.2111.001000001
droGri2
GCGCCATCGATGTCAGCTCAAACACGATCTACGACACCATCAACAAAGGCGTAAGTT--------T--TCCCGCTTATGTAAGACTAAAT-TG---TG--C------A-TTTTGAGAACGTCTCGTTTT-T--TTTTCTTCTAGAAACTCTGGAAGGACATCAAGGGCAAATATGAATAGATCGACGCTACTTCAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............GCTCAAACACGATCTACGACACCATC...........................................................................................................................................................2611.00110
.................................................................................................................................................AACTCTGGAAGGACATCAAGGGCA...........................2411.00101
droWil2
GGGCCGTTGATGTCAGCGCCAACGCCATTTGGGAATCCATCAACAAAGGCGTAAGTATTTCCACTTGCT-TGGCTTATGTAATCGAAA-ATAACT-------A----A-TAACAAA------TCCTTTT-G--ATTTCATACAGAAACTGTGGAAGGACATCAAGGGCAAATACGAATAAG----CGCTATAAATASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................AAACTGTGGAAGGACATCAAG...............................2115.00500500
................................................................................................................................................AAACTGTGGAAGGACATCAAGGGC............................2415.00501220
...........GTCAGCGCCAACGCCATTTGGGA..................................................................................................................................................................2314.00401030
.................................................................................................................................................AACTGTGGAAGGACATCAAGGGCA...........................2414.00411200
........GATGTCAGCGCCAACGCCATTTGGGA..................................................................................................................................................................2614.00400040
.................................................................................................................................................AACTGTGGAAGGACATCAAGGGCAAATAC......................2913.00310200
.........................CATTTGGGAATCCATCAACA.......................................................................................................................................................2012.00220000
....................AACGCCATTTGGGAATCCAT............................................................................................................................................................2012.00201100
...........GTCAGCGCCAACGCCATTT......................................................................................................................................................................1912.00200110
...........................................................................................................................................................GGACATCAAGGGCAAATACGAAT..................2312.00202000
.............CAGCGCCAACGCCATTTGGGA..................................................................................................................................................................2112.00200020
.....................................................................................................................................................GTGGAAGGACATCAAGGGCAA..........................2112.00201100
................................................................................................................................................AAACTGTGGAAGGACATCAA................................2012.00200110
..................................................................................................................................................ACTGTGGAAGGACATCAAGGG.............................2112.00200110
...................................................................................................................................................CTGTGGAAGGACATCAAGGGCA...........................2212.00220000
.................................................................................................................................................AACTGTGGAAGGACATCAAGGGC............................2312.00210100
....................AACGCCATTTGGGAATCCATC...........................................................................................................................................................2112.00200110
...................CAACGCCATTTGGGAATCCATCAACAA......................................................................................................................................................2711.00100010
................................................................................................................................................AAACTGTGGAAGGACATC..................................1811.00110000
................................................................................................................................................................TCAAGGGCAAATACGAATAAG----CGCT.......2511.00100100
....................................................................................................................................................................GGGCAAATACGAATAAG----CGCT.......2111.00100100
....................AACGCCATTTGGGAATCCATCAACAAAG....................................................................................................................................................2811.00100100
....................................................................................................................................................TGTGGAAGGACATCAAGGGC............................2011.00100010
.....................ACGCCATTTGGGAATCCATC...........................................................................................................................................................2011.00100100
...................................................................................................................................................................AGGGCAAATACGAATAAG----CGCT.......2211.00100010
..........................ATTTGGGAATCCATCAACAAAGGC..................................................................................................................................................2411.00100001
....................AACGCCATTTGGGAATCCATCAA.........................................................................................................................................................2311.00100100
.....................................................................................................................................................GTGGAAGGACATCAAGGG.............................1811.00101000
..........TGTCAGCGCCAACGCCATTTGGGAATC...............................................................................................................................................................2711.00100010
........GATGTCAGCGCCAACGCCATT.......................................................................................................................................................................2111.00100010
...............................................................................................................................................................ATCAAGGGCAAATACGAATAAG----CGCT.......2611.00100100
.................GCCAACGCCATTTGGGAATCCATC...........................................................................................................................................................2411.00100010
.........................................................................................................................................................AAGGACATCAAGGGCAAATACGAAT..................2511.00101000
..................................................................................................................................................................AAGGGCAAATACGAATAAG----CGCT.......2311.00100100
.......TGATGTCAGCGCCAACGCCATTTGGGA..................................................................................................................................................................2711.00100010
............................................................................................................................................................GACATCAAGGGCAAATACG.....................1911.00101000
.....................................................................................................................................................GTGGAAGGACATCAAGGGC............................1911.00100001
.......TGATGTCAGCGCCAACGC...........................................................................................................................................................................1811.00100010
..............................................................................................................................................................CATCAAGGGCAAATACGAAT..................2011.00100100
.......................................................................................................................................................GGAAGGACATCAAGGGCAAATACGA....................2511.00101000
................................................................................................................................................AAACTGTGGAAGGACATCAAC...............................2111.00100100
.................................................................................................................................................AACTGTGGAAGGACATCA.................................1811.00110000
.......TGATGTCAGCGCCAACGCCAT........................................................................................................................................................................2111.00100010
..............................GGGAATCCATCAACAAAGGC..................................................................................................................................................2011.00100010
............................................................................................................................................................GACATCAAGGGCAAATACGAATAAG----...........2511.00100010
..............................GGGAATCCATCAACAAAGGCA.................................................................................................................................................2111.00100010
.............CAGCGCCAACGCCATTTGGGAA.................................................................................................................................................................2211.00100100
.................................................................................................................................................................CAAGGGCAAATACGAATAAG----CGCTAT.....2611.00100010
.....................................................................................................................................................GTGGAAGGACATCAAGGGCAAA.........................2211.00100100
..........................................................................................................................................ATACAGAAACTGTGGAAGGAC.....................................2111.00100010
..................................................................................................................................................ACTGTGGAAGGACATCAAG...............................1911.00100010
........GATGTCAGCGCCAACGCCAT........................................................................................................................................................................2011.00100010
...........GTCAGCGCCAACGCCATTTGGGAATC...............................................................................................................................................................2611.00100010
.................................................................................................................................................AACTGTGGAAGGACATCAAG...............................2011.00100010
..............................GGGAATCCATCAACAAAGG...................................................................................................................................................1911.00101000
......................CGCCATTTGGGAATCCATCAACAAAGG...................................................................................................................................................2711.00101000
...................CAACGCCATTTGGGAATCCATCAAC........................................................................................................................................................2511.00100010
..................................................................................................................................................................AAGGGCAAATACGAATAAG----...........1911.00100010
.........ATGTCAGCGCCAACGCCATTTGGGA..................................................................................................................................................................2511.00100010
dp5
GTGCCATCGATGTCTCGTCCACTGCCCTGTTCGAGTCCATCAACAAAGGCGTAAGTTG-------GACT-CCTCTTATGTAAGACGAG-TT----GGGAATAAACGAATTACT-----------CTTTT-T--TTCGCTTGCAGAAACTCTGGAAGGACATCAAGAGCAAATACGAATAGG-------------CGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................GTTCGAGTCCATCAACAAAGGC..................................................................................................................................................2217.0070430000000
....CATCGATGTCTCGTCCACTGCCCT........................................................................................................................................................................2415.0050500000000
................GTCCACTGCCCTGTTCGAGTCCATC...........................................................................................................................................................2513.0030102000000
............................GTTCGAGTCCATCAACAAAGGCA.................................................................................................................................................2313.0030200100000
.....................................................................................................................................................CTGGAAGGACATCAAGAG.............................1813.0030200010000
.....................................................................................................................................................CTGGAAGGACATCAAGAGCAAATA.......................2413.0030000010020
.....ATCGATGTCTCGTCCACTGCCCC........................................................................................................................................................................2312.0020020000000
..............TCGTCCACTGCCCTGTTCGAGTCCA.............................................................................................................................................................2512.0020200000000
......................................................................................................................................TCGCTTGCAGAAACTCTGGAA.........................................2112.0020000000002
......................................................................................................................................................TGGAAGGACATCAAGAGCAAAT........................2212.0020000000200
.....................................................................................................................................................CTGGAAGGACATCAAGAGCAAATACG.....................2612.0020000000020
............................GTTCGAGTCCATCAACAAAGG...................................................................................................................................................2112.0020200000000
......................................................................................................................................................TGGAAGGACATCAAGAGCA...........................1912.0020200000000
.............................TTCGAGTCCATCAACAAAGGC..................................................................................................................................................2112.0020100100000
...............................CGAGTCCATCAACAAAGGC..................................................................................................................................................1912.0020020000000
.....ATCGATGTCTCGTCCACTGCCCT........................................................................................................................................................................2312.0020200000000
..........TGTCTCGTCCACTGCCCTGTT.....................................................................................................................................................................2111.0010100000000
......................TGCCCTGTTCGAGTCCATCAACAAAGG...................................................................................................................................................2711.0010100000000
...................................................................................................................................................CTCTGGAAGGACATCAAGAGC............................2111.0010100000000
....................ACTGCCCTGTTCGAGTCCATCAACAAAG....................................................................................................................................................2811.0010001000000
....................................................................................................................................................TCTGGAAGGACATCAAGAG.............................1911.0010100000000
................GTCCACTGCCCTGTTCGAGTCCA.............................................................................................................................................................2311.0010100000000
....CATCGATGTCTCGTCCACTGCCCTGT......................................................................................................................................................................2611.0010100000000
....................................................................................................................................................TCTGGAAGGACATCAAGAGCAA..........................2211.0010100000000
...........GTCTCGTCCACTGCCCTGTTCGA..................................................................................................................................................................2311.0010100000000
.................................................................................................................................................AACTCTGGAAGGACATCAAGAGCA...........................2411.0010100000000
GTGCCATCGATGTCTCGTC.................................................................................................................................................................................1911.0010001000000
................................................................................................................................................................TCAAGAGCAAATACGAATAGG-------------C.2211.0010100000000
.............................................................................................................................................................ACATCAAGAGCAAATACGA....................1911.0010000100000
..............................................................................................................................................................CATCAAGAGCAAATACGAATA.................2111.0010100000000
......TCGATGTCTCGTCCACTGCCCT........................................................................................................................................................................2211.0010100000000
....................ACTGCCCTGTTCGAGTCCATCAACA.......................................................................................................................................................2511.0010100000000
......................................................................................................................................................TGGAAGGACATCAAGAGCAAA.........................2111.0010000001000
.......................................................................................................................................................GGAAGGACATCAAGAGCAAAT........................2111.0010000001000
.......CGATGTCTCGTCCACTGCCC.........................................................................................................................................................................2011.0010100000000
.....................................................................................................................................................CTGGAAGGACATCAAGAGCAAATACGA....................2711.0010100000000
....................ACTGCCCTGTTCGAGTCCATCA..........................................................................................................................................................2211.0010100000000
.....................CTGCCCTGTTCGAGTCCATCA..........................................................................................................................................................2111.0010100000000
........................................................................................................................................................GAAGGACATCAAGAGCAAATACGAATCT................2811.0010000001000
..........................................ACAAAGGCGTAAGTTG-------GACT-..............................................................................................................................2011.0010100000000
...................................................................................................................................................CTCTGGAAGGACATCAAGAGCA...........................2211.0010100000000
......................................................................................................................................................TGGAAGGACATCAAGAGCAA..........................2011.0010100000000
............TCTCGTCCACTGCCCTGTTCGAGTCC..............................................................................................................................................................2611.0010100000000
......TCGATGTCTCGTCCACTGCC..........................................................................................................................................................................2011.0010001000000
.....................................................................................................................................................CTGGAAGGACATCAAGAGC............................1911.0010100000000
...................................................................................................................................................CTCTGGAAGGACATCAAGA..............................1911.0010100000000
....................................................................................................................................................TCTGGAAGGACATCAAGAGCAAATA.......................2511.0010100000000
..................................................................................................................................................ACTCTGGAAGGACATCAAG...............................1911.0010100000000
..........TGTCTCGTCCACTGCCCTGTTCGAGTCC..............................................................................................................................................................2811.0010100000000
......TCGATGTCTCGTCCACTGCCCTG.......................................................................................................................................................................2311.0010000010000
......TCGATGTCTCGTCCACTGCCC.........................................................................................................................................................................2111.0010001000000
............................................................................................................................................................GACATCAAGAGCAAATACGA....................2011.0010100000000
......................................................................................................................................................TGGAAGGACATCAAGAGCAAATACGAA...................2711.0010100000000
................GTCCACTGCCCTGTTCGAG.................................................................................................................................................................1911.0010000010000
...............CGTCCACTGCCCTGTTCGA..................................................................................................................................................................1911.0010100000000
.................TCCACTGCCCTGTTCGAGTC...............................................................................................................................................................2011.0010100000000
........................................................................TCTTATGTAAGACGAG-TT----GGG..................................................................................................2111.0010100000000
.........................................................................................................................................................AAGGACATCAAGAGCAAATAC......................2111.0010100000000
........................................................................................................................................................GAAGGACATCAAGAGCAAATAC......................2211.0010100000000
.........................................................................CTTATGTAAGACGAG-TT----GGGA.................................................................................................2111.0010100000000
....CATCGATGTCTCGTCCACTGCCCTGC......................................................................................................................................................................2611.0010010000000
....................................................................................................................................................TCTGGAAGGACATCAAGAGCA...........................2111.0010000001000
..................................................................................................................................................ACTCTGGAAGGACATCAAGA..............................2011.0010100000000
......TCGATGTCTCGTCCACTGCCCTGTTCG...................................................................................................................................................................2711.0010100000000
.............CTCGTCCACTGCCCTGTTCGAGTCCATC...........................................................................................................................................................2811.0010100000000
.................................................................................................................................................AACTCTGGAAGGACATCAAG...............................2011.0010100000000
.....ATCGATGTCTCGTCCACTGCCCTGTT.....................................................................................................................................................................2611.0010100000000
.......................GCCCTGTTCGAGTCCATCAACA.......................................................................................................................................................2211.0010100000000
...........GTCTCGTCCACTGCCCTGTTCGAGTCC..............................................................................................................................................................2711.0010100000000
...........GTCTCGTCCACTGCCCTGTTCGAGT................................................................................................................................................................2511.0010001000000
.....ATCGATGTCTCGTCCACTGCCCTG.......................................................................................................................................................................2411.0010100000000
......................TGCCCTGTTCGAGTCCATCAAC........................................................................................................................................................2211.0010000010000
........................................................................................................................................................GAAGGACATCAAGAGCAAAT........................2011.0010000010000
.......CGATGTCTCGTCCACTGCTT.........................................................................................................................................................................2020.5010100000000
droPer2
GTGCCATCGATGTCTCGTCCACTGCCCTGTTCGAGTCCATCAACAAAGGCGTAAGTTG-------CACT-CCTCTTATGTAAGACGAG-TT----GGGAATAAACGAATTACT-----------C-TTT-T--TTCGCTTGCAGAAACTCTGGAAGGACATCAAGAGCAAATACGAATAGG-------------CGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....CATCGATGTCTCGTCCACTGCCCT........................................................................................................................................................................24121.00212100000
............................GTTCGAGTCCATCAACAAAGGC..................................................................................................................................................2214.004112000
.......CGATGTCTCGTCCACTGCCCT........................................................................................................................................................................2113.003300000
....CATCGATGTCTCGTCCACT.............................................................................................................................................................................1913.003300000
........GATGTCTCGTCCACTGCCCT........................................................................................................................................................................2013.003210000
................................................................................................................................................AAACTCTGGAAGGACATC..................................1813.003200010
...........GTCTCGTCCACTGCCCTGTTCGA..................................................................................................................................................................2313.003210000
....CATCGATGTCTCGTCCACTGCCCTG.......................................................................................................................................................................2513.003300000
....CATCGATGTCTCGTCCACTGCCCG........................................................................................................................................................................2412.002200000
GTGCCATCGATGTCTCGTCC................................................................................................................................................................................2012.002000002
...........GTCTCGTCCACTGCCCTG.......................................................................................................................................................................1812.002200000
GTGCCATCGATGTCTCGTCCACTGCCCT........................................................................................................................................................................2812.002200000
................................................................................................................................................AAACTCTGGAAGGACATCAAG...............................2112.002200000
.........ATGTCTCGTCCACTGCCCTG.......................................................................................................................................................................2012.002200000
............................................................................................................................................................GACATCAAGAGCAAATACGAATAG................2412.002010001
.......CGATGTCTCGTCCACTGCC..........................................................................................................................................................................1912.002200000
...........GTCTCGTCCACTGCCCTGTTC....................................................................................................................................................................2112.002200000
.....ATCGATGTCTCGTCCACTGCCCTGTTCGA..................................................................................................................................................................2912.002200000
...................................................................................................................................................CTCTGGAAGGACATCAAGAGC............................2111.001000001
................................GAGTCCATCAACAAAGGCA.................................................................................................................................................1911.001010000
.......................................................................................................................................................GGAAGGACATCAAGAGCA...........................1811.001010000
.......................................................................................................................................................GGAAGGACATCAAGAGCAAA.........................2011.001010000
.............CTCGTCCACTGCCCTGTTCGAGT................................................................................................................................................................2311.001010000
....CATCGATGTCTCGTCCACTGCCC.........................................................................................................................................................................2311.001100000
................GTCCACTGCCCTGTTCGAGTCCATCAAC........................................................................................................................................................2811.001010000
.........ATGTCTCGTCCACTGCCCC........................................................................................................................................................................1911.001100000
.............CTCGTCCACTGCCCTGTTCGAGTC...............................................................................................................................................................2411.001010000
...............................CGAGTCCATCAACAAAGGC..................................................................................................................................................1911.001010000
..............................................................................................................................................................CATCAAGAGCAAATACGAATA.................2111.001010000
..........TGTCTCGTCCACTGCCCTGTTCGAGT................................................................................................................................................................2611.001010000
...................................................................................................................................................CTCTGGAAGGACATCAAGAG.............................2011.001000001
...............................................................................................................................................................ATCAAGAGCAAATACGAATAGG-------------G.2311.001001000
..............TCGTCCACTGCCCTGTTCGA..................................................................................................................................................................2011.001100000
....................ACTGCCCTGTTCGAGTCCAT............................................................................................................................................................2011.001000001
......................................................................................................................................................TGGAAGGACATCAAGAGCA...........................1911.001010000
.....................................................................................................................................................CTGGAAGGACATCAAGAGC............................1911.001000001
.................TCCACTGCCCTGTTCGAGTCCATCAA.........................................................................................................................................................2611.001010000
...............CGTCCACTGCCCTGTTCGAGTC...............................................................................................................................................................2211.001010000
GTGCCATCGATGTCTCGTCCA...............................................................................................................................................................................2111.001000001
.........ATGTCTCGTCCACTGCCCTGTTCGA..................................................................................................................................................................2511.001100000
........GATGTCTCGTCCACTGCCC.........................................................................................................................................................................1911.001100000
.............CTCGTCCACTGCCCTGTTCGA..................................................................................................................................................................2111.001100000
.....................................................................................................................................................CTGGAAGGACATCAAGAGCA...........................2011.001010000
....................ACTGCCCTGTTCGAGTCCATCA..........................................................................................................................................................2211.001010000
......................................................................................................................................................TGGAAGGACATCAAGAGCAAATA.......................2311.001000001
.................................................................................................................................................AACTCTGGAAGGACATCAAGAGC............................2311.001100000
...........................................................................................................................................................GGACATCAAGAGCAAATACGAATAGG-------------..2611.001010000
.................................................................................................................................................................CAAGAGCAAATACGAATAGG-------------..2011.001000001
........GATGTCTCGTCCACTGCCCTGTTCGA..................................................................................................................................................................2611.001100000
....CATCGATGTCTCGTCCACTGCCCC........................................................................................................................................................................2411.001100000
................................................................................................................................................AAACTCTGGAAGGACATCA.................................1911.001010000
...CCATCGATGTCTCGTCCACTGC...........................................................................................................................................................................2211.001100000
....................ACTGCCCTGTTCGAGTCCA.............................................................................................................................................................1911.001010000
...........................................................................................................................................................GGACATCAAGAGCAAATACG.....................2011.001010000
droAna3
GCGCCGTGGACGTCAGCTCGAACCTGATCTTCGAGACCGTCAACAAAGGCGTAAGTA--------G--TCACTATTATGTAAGAAAAA---TCCTGGC--TAA----AATAT---A--------C-T-T-T--TCTGATTATAGAAACTCTGGAAGGACATCAAGGGCAAATACGAATAAA---------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................GAACCTGATCTTCGAGACCGT............................................................................................................................................................2114.004210001
....................AACCTGATCTTCGAGACCGT............................................................................................................................................................2014.004210010
..................CGAACCTGATCTTCGAGACC..............................................................................................................................................................2014.004030010
GCGCCGTGGACGTCAGCTCGAACC............................................................................................................................................................................2413.003300000
.....................ACCTGATCTTCGAGACCGT............................................................................................................................................................1913.003200010
GCGCCGTGGACGTCAGCTCGAACCT...........................................................................................................................................................................2512.002200000
.CGCCGTGGACGTCAGCTCGAACCT...........................................................................................................................................................................2412.002200000
.....................ACCTGATCTTCGAGACCGTCA..........................................................................................................................................................2112.002000020
...........................................................................................................................................................GGACATCAAGGGCAAATACGA....................2112.002010010
....................................................................................................................................................TCTGGAAGGACATCAAGGGC............................2012.002100001
.........................GATCTTCGAGACCGTCAACA.......................................................................................................................................................2012.002100010
...........GTCAGCTCGAACCTGATCTTCGAGACC..............................................................................................................................................................2712.002200000
.....................................................................................................................................................CTGGAAGGACATCAAGGGCA...........................2012.002100010
........................TGATCTTCGAGACCGTCAACA.......................................................................................................................................................2111.001000010
.............CAGCTCGAACCTGATCTTCGAGACC..............................................................................................................................................................2511.001100000
..................CGAACCTGATCTTCGAGACCGTC...........................................................................................................................................................2311.001100000
.......................................................................................................................................................GGAAGGACATCAAGGGCAAA.........................2011.001100000
......................................................................................................................................................TGGAAGGACATCAAGGGCA...........................1911.001100000
..................................................................................................................................................ACTCTGGAAGGACATCAAGGG.............................2111.001000100
.................TCGAACCTGATCTTCGAGACCGTCAACA.......................................................................................................................................................2811.001100000
.........ACGTCAGCTCGAACCTGATC.......................................................................................................................................................................2011.001100000
.............................TTCGAGACCGTCAACAAAGGCA.................................................................................................................................................2211.001000010
.CGCCGTGGACGTCAGCTCGAAC.............................................................................................................................................................................2211.001100000
..................CGAACCTGATCTTCGAGAC...............................................................................................................................................................1911.001000010
.........................GATCTTCGAGACCGTCAACAAAGGC..................................................................................................................................................2511.001010000
.....GTGGACGTCAGCTCGAACCT...........................................................................................................................................................................2011.001010000
.......................................................................................................................................................GGAAGGACATCAAGGGCA...........................1811.001100000
.........................GATCTTCGAGACCGTCAACAAAGGCA.................................................................................................................................................2611.001000010
..............................................................................................................................................................CATCAAGGGCAAATACGAATAA................2211.001100000
.....................ACCTGATCTTCGAGACCGTC...........................................................................................................................................................2011.001010000
............................................................................................................................................................GACATCAAGGGCAAATACGAAT..................2211.001100000
...................................................................................................................................................CTCTGGAAGGACATCAAGGGCAAA.........................2411.001000010
...........................................................................................................................................................GGACATCAAGGGCAAATACGAATA.................2411.001100000
..................................................................................................................................................ACTCTGGAAGGACATCAAGGGCAAA.........................2511.001100000
...................GAACCTGATCTTCGAGACCGTC...........................................................................................................................................................2211.001100000
...............GCTCGAACCTGATCTTCGAGAC...............................................................................................................................................................2211.001010000
.CGCCGTGGACGTCAGCTCG................................................................................................................................................................................1911.001000010
.....GTGGACGTCAGCTCGAACCTGAT........................................................................................................................................................................2311.001100000
........................TGATCTTCGAGACCGTCAACAAAGGC..................................................................................................................................................2611.001100000
...........................................................................................................................................................GGACATCAAGGGCAAATACG.....................2011.001100000
..................................................................................................................................................ACTCTGGAAGGACATCAAGGGC............................2211.001100000
................................GAGACCGTCAACAAAGGCA.................................................................................................................................................1911.001100000
..................................................GTAAGTA--------G--TCACTATTATGTAA..................................................................................................................2211.001001000
.............................................................................................................................................................ACATCAAGGGCAAATACGAAT..................2111.001100000
.................TCGAACCTGATCTTCGAGACCGTCA..........................................................................................................................................................2511.001010000
..........................................................................................................................................................AGGACATCAAGGGCAAATACGAAT..................2411.001100000
..............AGCTCGAACCTGATCTTCGA..................................................................................................................................................................2011.001010000
.................................................................................................................................................AACTCTGGAAGGACATCAAGGGCAA..........................2511.001100000
..................................................................................................................................................ACTCTGGAAGGACATCAAGGGCAA..........................2411.001100000
...................................................................................................................................................CTCTGGAAGGACATCAAGGG.............................2011.001100000
......................................................................................................................................................TGGAAGGACATCAAGGGCAAA.........................2111.001100000
...................GAACCTGATCTTCGAGACCGC............................................................................................................................................................2111.001010000
..................CGAACCTGATCTTCGAGACCGTCAACA.......................................................................................................................................................2711.001100000
GCGCCGTGGACGTCAGCTCG................................................................................................................................................................................2011.001100000
..........CGTCAGCTCGAACCTGATC.......................................................................................................................................................................1911.001100000
....................AACCTGATCTTCGAGACCGTC...........................................................................................................................................................2111.001100000
.........................GATCTTCGAGACCGTCAACAA......................................................................................................................................................2111.001000010
...................GAACCTGATCTTCGAGACC..............................................................................................................................................................1911.001010000
............................................................................................................................................................GACATCAAGGGCAAATACGAA...................2111.001100000
....................................................................................................................................................TCTGGAAGGACATCAAGGGCAAAT........................2411.001100000
....................................................................................................................................................TCTGGAAGGACATCAAGGGCA...........................2111.001100000
.................................................................................................................................................AACTCTGGAAGGACATCAAGGGC............................2311.001100000
GCGCCGTGGACGTCAGCTCGAACCC...........................................................................................................................................................................2511.001010000
........GACGTCAGCTCGAACCTGATCTTCGAG.................................................................................................................................................................2711.001100000
..................................................................................................................................................ACTCTGGAAGGACATCAA................................1811.001100000
...............................................................................................................................................................ATCAAGGGCAAATACGAATAA................2111.001100000
.....GTGGACGTCAGCTCGAACC............................................................................................................................................................................1911.001000001
...................................................................................................................................................CTCTGGAAGGACATCAAGGGCA...........................2211.001100000
.................................................................................................................................................AACTCTGGAAGGACATCAAGGGCA...........................2411.001100000
................................................................................................................................................AAACTCTGGAAGGACATCAAGGGCA...........................2511.001100000
GCGCCGTGGACGTCAGCTCGAACCTGATC.......................................................................................................................................................................2911.001010000
............................................................................................................................................................GACATCAAGGGCAAATACGA....................2011.001010000
........................................................................................................................................................GAAGGACATCAAGGGCAAATACG.....................2311.001000010
...........................................................................................................................................................GGACATCAAGGGCAAATACGAAT..................2311.001010000
...............................................................................................................................................................ATCAAGGGCAAATACGAA...................1811.001010000
...................................................................................................................................................CTCTGGAAGGACATCAAG...............................1811.001000100
....CGTGGACGTCAGCTCGAACC............................................................................................................................................................................2011.001100000
............................CTTCGAGACCGTCAACAAAGG...................................................................................................................................................2111.001010000
..GCCGTGGACGTCAGCTCGAACC............................................................................................................................................................................2211.001100000
..................CGAACCTGATCTTCGAGACCGTCA..........................................................................................................................................................2411.001100000
.................................................................................................................................................AACTCTGGAAGGACATCAAGG..............................2111.001000010
............................CTTCGAGACCGTCAACAAAG....................................................................................................................................................2011.001010000
..........................................................................................................................................................AGGACATCAAGGGCAAATACGAATAAA---------------2711.001100000
.................TCGAACCTGATCTTCGAGACCGTC...........................................................................................................................................................2411.001000010
..............................................................................................................................................................CATCAAGGGCAAATACGAATA.................2111.001010000
GCGCCGTGGACGTCAGCTCGA...............................................................................................................................................................................2111.001100000
droBip1
GCGCCGTGGACGTCAGCTCGAACTTGATCTTCGAGTCCGTCAACAAAGGCGTAAGTA--------G--TCGCACTTATGTAAGAGAAC---TCCTGGC--TAA----AATATT-----------C-C-T-T--TTTAACCGCAGAAACTCTGGAAGGACATCAAGGGCAAATACGAATAAA---------------SizeHit CountTotal NormTotal
No Reads
droKik1
GCGCCCTCGATGTGAGCTCAGTGGCGATCTTTGAGAGCGTCAACAAAGGCGTAAGTG--------C--T-CTGCTTATGTAAGAGGAA-T-TCCTTGC--TAA----A-TATCGAA--------T-T-TT---CCCCCTTGCAGAAGCTCTGGAAGGACATTAAGGCCAAATATGAATAAATT---------AGTASizeHit CountTotal NormTotal
No Reads
droFic1
GCGCCATCGATGTCACATCGGTTGCGATCTTCGAGGGAATCAACAAAGGCGTAAGTA--------ATAA-GCTCTTATGTAACAGTAG-ATTCCTGGC--TAA----A-TATTGAA--------T-T-TTCC-TTCGCTTGCAGAAACTCTGGAAGGACATCAAGGGCAAATACGAATAAATC---------A---SizeHit CountTotal NormTotal
No Reads
droEle1
GCGCCATCGATGTCACATCGACTACGATTTTCGAGAGCGTCAACAAAGGCGTAAGTA--------CCAA-CCGCTTATGTAAGAGTAG-ATTCCTGGC--CAA----A-TATTGAC--------T-T-TTCC-CCCGTTTGCAGAAACTCTGGAAGGACATCAAGGGCAAATACGAATAAATC---------ATAASizeHit CountTotal NormTotal
No Reads
droRho1
GCGCCATCGATGTCACATCGAACACGATCTTCGATACCGTCAACAAAGGCGTAAGTA--------TCAA-CCGCTTATGTAAGATGAG-TTTCCTGGT--CAA----A-TATTGAA--------T-T-TTTCACTCGCTTGCAGAAACTCTGGAAGGACATCAAAGCCAAATACGAATAAATC------------ASizeHit CountTotal NormTotal
No Reads
droBia1
GCGCCATCGATGTCACGTCGGTCGCGATCTTCGAGGGCATCAACAAAGGCGTAAGTA--------TAGT-CCTCTTATGTAACTCGGG-TTTCCTGGC--CAA----A-TATTGAG--------T-T-TTCC-CCCCTTTTCAGAAACTCTGGAAGGACATCAAGGGCAAATACGAATAGATC---------ACCASizeHit CountTotal NormTotal
No Reads
droTak1
GCGCCATCGATGTCACGTCGGTTGCGATCTTCGAGGGCATCAACAAAGGCGTAAGTG--------CAAT-CCGCTTATGTAATACCAG-TTTCCTGGC--CAA----A-TACTAAG--------T-T-CCTT-CCCCCTTGCAGAAGCTCTGGAAGGACATCAAGGGCAAATACGAATAAACT---------ACCASizeHit CountTotal NormTotal
No Reads
droEug1
GCGCCATTGATGTCACGTCGGTGGCGATCTTTGAGAGCGTCAACAAAGGCGTAAGTA--------TAAT-GCTCTTATGTAAGAGGAG-TTTCCTATC--CAA----A-TATTTCA--------T-T-TTAT-CCTTTTTCTAGAAACTCTGGAAGGACATCAAGGGCAAATACGAATA-----------------SizeHit CountTotal NormTotal
No Reads
dm3
GCGCTCTCGATGTCACGTCGGTTGCGATTTTCGAGGGCATCAACAAAGGCGTAAGTA--------TAAT-CCTGTTATGTAAGCAAAG-TTTCCTGGC--CAA----A-TCTCAAG--------A-T-TTCC-CCGCTTTGCAGAAACTCTGGAAGGACATCAAGGGCAAATACGAATAAATT---------AACASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................AGGGCAAATACGAATAAATT---------AACA24123.00230000010000000000000000000000000000000000000000000000000000000000000000000000000000000001000000003600008100000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GATTTTCGAGGGCATCAACA.......................................................................................................................................................20120.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004600000030000010000000000000000000000000000000000000000000000000000000100000020000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000010010000000000000000000000000000
.............CACGTCGGTTGCGATTTTCGAGGGC..............................................................................................................................................................25113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000001000000000000000000000000000000000000000000000010000000000000000000000000002000000001000000000000000000000000000000000000000000000000000000000000000000000000001000000000100000000410000000
............TCACGTCGGTTGCGATTTTCGAGGGC..............................................................................................................................................................26111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000100200000220000000
..........TGTCACGTCGGTTGCGATTTTCGAGG................................................................................................................................................................26111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000200000003120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000
.................................................................................................................................................AACTCTGGAAGGACATCAAGG..............................21110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000135000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................AGGGCAAATACGAATAAAT..............1919.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000001400000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GTTGCGATTTTCGAGGGCATC...........................................................................................................................................................2118.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000001003000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000001000000001000000000000000000000000000000
...............................................................................................................................................................ATCAAGGGCAAATACGAATA.................2018.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................CAAAGGCGTAAGTA--------TC.................................................................................................................................1637.6723000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001211000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GATGTCACGTCGGTTGCGA.........................................................................................................................................................................1917.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000300000000
........GATGTCACGTCGGTTGCGATT.......................................................................................................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000020000000010000000000000001000
...............................................................................................................................................................ATCAAGGGCAAATACGAATAAATT---------AAC.2717.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GCGATTTTCGAGGGCATCA..........................................................................................................................................................1917.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000002000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
......................TGCGATTTTCGAGGGCATCAACA.......................................................................................................................................................2317.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000100000010000000000000000000000000100000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CGGTTGCGATTTTCGAGGGC..............................................................................................................................................................2017.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................AAACTCTGGAAGGACATC..................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................TCAAGGGCAAATACGAATA.................1915.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GCGATTTTCGAGGGCATCAACA.......................................................................................................................................................2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000100000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................AACTCTGGAAGGACATCAAGGGCA...........................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000100000000000000000000000000000
......................TGCGATTTTCGAGGGCATCA..........................................................................................................................................................2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003100000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................GACATCAAGGGCAAATACGA....................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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....................................GCATCAACAAAGGCGTAAGT............................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000010
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.........................GATTTTCGAGGGCATCAACAAAGGC..................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000001000000000000
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..............ACGTCGGTTGCGATTTTCGAGGGCATC...........................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...........................................................................................TCCTGGC--CAA----A-TCTCAAG--------A-T-TTC.................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.....................................................AGTA--------TAAT-CCTGTTATGTAAG.................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
GCGCTCTCGATGTCACGTCGGTTGCGATTTTCGAGGGCATCAACAAAGGCGTAAGTA--------TAAT-CCTGTTATGTAAGCAAAG-TTTCCTGGC--CAA----A-TCTCAAG--------A-T-TTCC-CCGCTTTGCAGAAACTCTGGAAGGACATCAAGGGCAAATACGAATAAATC---------AACASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................CGGTTGCGATTTTCGAGGGC..............................................................................................................................................................2018.00813300000001000000
........GATGTCACGTCGGTTGCGATTTTCGA..................................................................................................................................................................2616.00601500000000000000
...................GGTTGCGATTTTCGAGGGC..............................................................................................................................................................1915.00503200000000000000
................GTCGGTTGCGATTTTCGAGGGC..............................................................................................................................................................2214.00401300000000000000
....TCTCGATGTCACGTCGGTTGC...........................................................................................................................................................................2113.00300200100000000000
.................................................................................................................................................AACTCTGGAAGGACATCAAGG..............................2113.00300100002000000000
..........TGTCACGTCGGTTGCGATTTTCGA..................................................................................................................................................................2413.00300100020000000000
..........................................................................................................................................................AGGACATCAAGGGCAAATACGAATAAATC---------....2912.00200000011000000000
.............CACGTCGGTTGCGATTTTCGA..................................................................................................................................................................2112.00200200000000000000
............TCACGTCGGTTGCGATTTTCGAGG................................................................................................................................................................2412.00210000000100000000
........GATGTCACGTCGGTTGCG..........................................................................................................................................................................1812.00201100000000000000
............TCACGTCGGTTGCGATTTTCGA..................................................................................................................................................................2212.00200200000000000000
.........ATGTCACGTCGGTTGCGATTTTCGA..................................................................................................................................................................2512.00200200000000000000
...................................................................................................................................................CTCTGGAAGGACATCAAGGGC............................2112.00200200000000000000
.CGCTCTCGATGTCACGTCGGTTGC...........................................................................................................................................................................2412.00200200000000000000
.................................................................................................................................................AACTCTGGAAGGACATCAAGGGCAAA.........................2611.00100000000000010000
............................................................................................................................................GCAGAAACTCTGGAAGGA......................................1811.00110000000000000000
GCGCTCTCGATGTCACGTCG................................................................................................................................................................................2011.00100000000001000000
................................................................................................................................................AAACTCTGGAAGGACATCAAGGGCAAA.........................2711.00100000000001000000
......................................................................................................................................................TGGAAGGACATCAAGGGCAAATA.......................2311.00100000000100000000
............TCACGTCGGTTGCGATTTTCGG..................................................................................................................................................................2211.00100100000000000000
.................TCGGTTGCGATTTTCGAGGGC..............................................................................................................................................................2111.00110000000000000000
....TCTCGATGTCACGTCGGTTGCGATT.......................................................................................................................................................................2511.00100000010000000000
...........GTCACGTCGGTTGCGATTTTCGA..................................................................................................................................................................2311.00100100000000000000
...............CGTCGGTTGCGATTTTCGAGGGCATC...........................................................................................................................................................2611.00100010000000000000
....TCTCGATGTCACGTCGGTTGCGAT........................................................................................................................................................................2411.00100000001000000000
...............CGTCGGTTGCGATTTTCGAGGGC..............................................................................................................................................................2311.00100100000000000000
..............ACGTCGGTTGCGATTTTCGAGGG...............................................................................................................................................................2311.00101000000000000000
...........GTCACGTCGGTTGCGATTTTCGAGG................................................................................................................................................................2511.00101000000000000000
................................................................................................................................................................TCAAGGGCAAATACGAATAAATC---------....2311.00100000010000000000
..............ACGTCGGTTGCGATTTTCGAGGGC..............................................................................................................................................................2411.00101000000000000000
..................................................................................................................................................ACTCTGGAAGGACATCAAG...............................1911.00100100000000000000
...........GTCACGTCGGTTGCGATTTTCGAG.................................................................................................................................................................2411.00100100000000000000
......TCGATGTCACGTCGGTTGCGATTTTCG...................................................................................................................................................................2711.00100000010000000000
..............................................................................................................................T-TTCC-CCGCTTTGCAGAAACT...............................................2111.00100000000010000000
........GATGTCACGTCGGTTGCGA.........................................................................................................................................................................1911.00100100000000000000
....................................................................................................................................................TCTGGAAGGACATCAAGGGCAAATAA......................2611.00100000000000010000
...........GTCACGTCGGTTGCGATTTTCGAGGGC..............................................................................................................................................................2711.00100100000000000000
................................................................................................................................................................TCAAGGGCAAATACGAATAAATC---------A...2411.00100010000000000000
....................................................................................................................................................TCTGGAAGGACATCAAGGGCAAATAC......................2611.00100000000010000000
.........................GATTTTCGAGGGCATCAACAAAG....................................................................................................................................................2311.00100000000000100000
...........GTCACGTCGGTTGCGATT.......................................................................................................................................................................1811.00101000000000000000
.........................................................................................................................................................AAGGACATCAAGGGCAAATACGA....................2311.00101000000000000000
.....................................................................................................................................CCGCTTTGCAGAAACTCTGGAAGGA......................................2511.00110000000000000000
.................................................................................................................................................AACTCTGGAAGGACATCAAG...............................2011.00100100000000000000
...................................................................................................................................................CTCTGGAAGGACATCAAG...............................1811.00100010000000000000
..........................ATTTTCGAGGGCATCAACAAAGG...................................................................................................................................................2311.00100000000000100000
..................................................................................................................................................ACTCTGGAAGGACATCAAGGGCAA..........................2411.00100000000000001000
.........ATGTCACGTCGGTTGCGG.........................................................................................................................................................................1820.50100100000000000000
droSec2
GCGCTCTCGATGTCACGTCGGTTGCGATTTTCGAGGGCATCAACAAAGGCGTAAGTA--------TGAT-CCTCTTATGTAAGCAAAG-TTTCCTTGC--CAA----A-TCTCAAG--------A-T-TTCC-CCGCTTTGCAGAAACTCTGGAAGGACATTAAGGGCAAATACGAATAAATC---------AACASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........GATGTCACGTCGGTTGCGATTTTCGA..................................................................................................................................................................2614.0040031
...............................................................................................................................................................ATTAAGGGCAAATACGAATAAAT..............2314.0041030
...................GGTTGCGATTTTCGAGGGC..............................................................................................................................................................1914.0040040
...........GTCACGTCGGTTGCGATTTTCGA..................................................................................................................................................................2314.0040130
....................GTTGCGATTTTCGAGGGC..............................................................................................................................................................1814.0041021
...........GTCACGTCGGTTGCGATTTTCGAGGGC..............................................................................................................................................................2713.0030210
.........................GATTTTCGAGGGCATCAACAAAGGC..................................................................................................................................................2512.0020110
.....................................................................................................................................................CTGGAAGGACATTAAGGGC............................1912.0020110
........GATGTCACGTCGGTTGCGA.........................................................................................................................................................................1912.0020020
..........TGTCACGTCGGTTGCGATTTTCGAG.................................................................................................................................................................2512.0020011
.........................GATTTTCGAGGGCATCAACAAAGGCA.................................................................................................................................................2612.0021010
..............................................................................................................................................................CATTAAGGGCAAATACGA....................1812.0020020
.........................GATTTTCGAGGGCATCAACA.......................................................................................................................................................2012.0021100
.........................................................................................................................................................AAGGACATTAAGGGCAAATACGA....................2312.0020101
....TCTCGATGTCACGTCGGTTG............................................................................................................................................................................2012.0021010
.............CACGTCGGTTGCGATTTTCGAGGGC..............................................................................................................................................................2512.0020020
..............ACGTCGGTTGCGATTTTCGAGGGC..............................................................................................................................................................2412.0020020
......TCGATGTCACGTCGGTTGCGA.........................................................................................................................................................................2111.0010100
...............................................................................................................................................................ATTAAGGGCAAATACGAA...................1811.0010010
.........................GATTTTCGAGGGCATCAACAAAGG...................................................................................................................................................2411.0010010
...........GTCACGTCGGTTGCGATTTTCGAGGG...............................................................................................................................................................2611.0010010
...................GGTTGCGATTTTCGAGGGCATCAACA.......................................................................................................................................................2611.0010100
..............ACGTCGGTTGCGATTTTCGAGG................................................................................................................................................................2211.0011000
...................GGTTGCGATTTTCGAGGG...............................................................................................................................................................1811.0010010
............................................................................................................................................................GACATTAAGGGCAAATACGA....................2011.0010010
...........GTCACGTCGGTTGCGATTTTCGAG.................................................................................................................................................................2411.0010010
.....................................................................................................................................................CTGGAAGGACATTAAGGGCAAAT........................2311.0010010
GCGCTCTCGATGTCACGTCG................................................................................................................................................................................2011.0010010
................................................................................................................................................................TTAAGGGCAAATACGAATAAATC---------AAC.2611.0010010
..................CGGTTGCGATTTTCGAGGGC..............................................................................................................................................................2011.0010010
......TCGATGTCACGTCGGTTGC...........................................................................................................................................................................1911.0011000
...................................................................................................................................................CTCTGGAAGGACATTAAGGGC............................2111.0010010
................GTCGGTTGCGATTTTCGAGGGCATC...........................................................................................................................................................2511.0010010
................................................................................................................................................................TTAAGGGCAAATACGAATA.................1911.0010100
................................................................................................................................................AAACTCTGGAAGGACATTAA................................2011.0011000
........GATGTCACGTCGGTTGCG..........................................................................................................................................................................1811.0010010
.............................TTCGAGGGCATCAACAAAGGCAA................................................................................................................................................2311.0011000
......................TGCGATTTTCGAGGGCATCAAC........................................................................................................................................................2211.0010100
................GTCGGTTGCGATTTTCGAGGGC..............................................................................................................................................................2211.0011000
..GCTCTCGATGTCACGTCGGTTG............................................................................................................................................................................2211.0010010
........................CGATTTTCGAGGGCATCAAC........................................................................................................................................................2011.0010001
...........GTCACGTCGGTTGCGATTTTCGAGG................................................................................................................................................................2511.0010010
...................GGTTGCGATTTTCGAGGGCATC...........................................................................................................................................................2211.0010100
.....CTCGATGTCACGTCGGTTGC...........................................................................................................................................................................2011.0011000
.............CACGTCGGTTGCGATTTTCGAGGG...............................................................................................................................................................2411.0010010
...................................................................................................................................................CTCTGGAAGGACATTAAGGG.............................2011.0010010
..................CGGTTGCGATTTTCGAGGG...............................................................................................................................................................1911.0010010
.............CACGTCGGTTGCGATTTTCGA..................................................................................................................................................................2111.0010010
..........................ATTTTCGAGGGCATCAACAAAGGC..................................................................................................................................................2411.0010100
.CGCTCTCGATGTCACGTCGGTTGC...........................................................................................................................................................................2411.0010010
..............................................................................................................................................................CATTAAGGGCAAATACGAATAAAT..............2411.0010010
......................................................................................................................................................TGGAAGGACATTAAGGGCAAATAC......................2411.0010100
............TCACGTCGGTTGCGATTTTCGAGGGC..............................................................................................................................................................2611.0010010
......................TGCGATTTTCGAGGGCATCA..........................................................................................................................................................2011.0011000
.........................GATTTTCGAGGGCATCAACAAA.....................................................................................................................................................2211.0010010
...............................CGAGGGCATCAACAAAGGC..................................................................................................................................................1911.0010100
..........TGTCACGTCGGTTGCGATTTTCGAGG................................................................................................................................................................2611.0010010
........................................................................................................................................................GAAGGACATTAAGGGCAAATACGAA...................2511.0011000
..................................................................................................................................................ACTCTGGAAGGACATTAAGGGC............................2211.0010010
....................................................................................................................................................TCTGGAAGGACATTAAGG..............................1811.0010010
......................TGCGATTTTCGAGGGCATCG..........................................................................................................................................................2011.0010001
..........TGTCACGTCGGTTGCGATTTTCGA..................................................................................................................................................................2411.0010010
....................................................................................................................................................TCTGGAAGGACATTAAGGGCA...........................2111.0010100
.............................TTCGAGGGCATCAACAAAGGC..................................................................................................................................................2111.0010010
......................TGCGATTTTCGAGGGCATCAACA.......................................................................................................................................................2311.0010100
.......................GCGATTTTCGAGGGCATCAACA.......................................................................................................................................................2211.0011000
..............ACGTCGGTTGCGATTTTCGAGGGCATC...........................................................................................................................................................2711.0010010
................................................................................................................................................AAACTCTGGAAGGACATTAAG...............................2111.0010010
...................GGTTGCGATTTTCGAGGGCA.............................................................................................................................................................2011.0010100
................................................................................................................................................AAACTCTGGAAGGACATTAAGGG.............................2311.0011000
droYak3
GCGCCATCGATGTCACGTCGGTTGCGATTTTCGAGGGCATCAACAAAGGCGTAAGTA--------AAAT-CCTATTATGTAAGCAAAG-TTTCCTGGC--CAA----A-TCTCAAG--------T-T-TTGC-CTTCTTTGCAGAAACTCTGGAAGGACATCAAGGGCAAATACGAATAAATC---------ACCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........GATGTCACGTCGGTTGCGATTTTCGA..................................................................................................................................................................26121.0021200000190000
.....ATCGATGTCACGTCGGTTGC...........................................................................................................................................................................2018.00803110030000
........GATGTCACGTCGGTTGCGA.........................................................................................................................................................................1916.00600000060000
.........................GATTTTCGAGGGCATCAACAAAGGCA.................................................................................................................................................2615.00500100040000
........GATGTCACGTCGGTTGCGATTTTCGAG.................................................................................................................................................................2713.00300000030000
.............CACGTCGGTTGCGATTTTCGAGGGC..............................................................................................................................................................2513.00300011010000
........GATGTCACGTCGGTTGCGAT........................................................................................................................................................................2013.00300000030000
......TCGATGTCACGTCGGTTGC...........................................................................................................................................................................1913.00303000000000
...............................................................................................................................................................ATCAAGGGCAAATACGAATAAAT..............2312.00200000020000
.........................GATTTTCGAGGGCATCAACAAAGG...................................................................................................................................................2412.00201000010000
...........GTCACGTCGGTTGCGATTTTCGAGGGC..............................................................................................................................................................2712.00200000020000
..............ACGTCGGTTGCGATTTTCGAGGGC..............................................................................................................................................................2412.00201000010000
.........................GATTTTCGAGGGCATCAACAAA.....................................................................................................................................................2212.00200100010000
............................................................................ATGTAAGCAAAG-TTTCCTGGC--................................................................................................2111.00101000000000
......................TGCGATTTTCGAGGGCATCAACAAAGG...................................................................................................................................................2711.00101000000000
.........................GATTTTCGAGGGCATCAACAAAGGCAA................................................................................................................................................2711.00100000010000
........GATGTCACGTCGGTTGCG..........................................................................................................................................................................1811.00101000000000
.................................................................................................................................................AACTCTGGAAGGACATCAAG...............................2011.00100000100000
........................CGATTTTCGAGGGCATCAACAAAGGCA.................................................................................................................................................2711.00100000010000
..............ACGTCGGTTGCGATTTTCGA..................................................................................................................................................................2011.00100000010000
GCGCCATCGATGTCACGTCGGTTG............................................................................................................................................................................2411.00100100000000
...................................................................................................................................................CTCTGGAAGGACATCAAGGG.............................2011.00100000010000
.........ATGTCACGTCGGTTGCGAT........................................................................................................................................................................1911.00100000010000
..............ACGTCGGTTGCGATTTTCGAGGGCA.............................................................................................................................................................2511.00100000010000
........GATGTCACGTCGGTTGCGATTTTCGAGG................................................................................................................................................................2811.00110000000000
GCGCCATCGATGTCACGTCGGT..............................................................................................................................................................................2211.00100000010000
..........TGTCACGTCGGTTGCGATTTTCGAGGG...............................................................................................................................................................2711.00100000010000
.........................GATTTTCGAGGGCATCAACA.......................................................................................................................................................2011.00101000000000
..........TGTCACGTCGGTTGCGATTTTCGAGG................................................................................................................................................................2611.00100000010000
.............................................................................TGTAAGCAAAG-TTTCCTGGC--CAA----A-.......................................................................................2411.00100100000000
................................................................................................................................................AAACTCTGGAAGGACATCAAG...............................2111.00101000000000
................................................................................................................................................................TCAAGGGCAAATACGAATA.................1911.00100000010000
..................................................................................................................................................ACTCTGGAAGGACATCAAGG..............................2011.00100000010000
..................................................................................................................................................................AAGGGCAAATACGAATAAAT..............2011.00100000010000
...................................................................................................................................................CTCTGGAAGGACATCAAGGGC............................2111.00100100000000
..................................................................................................................................................ACTCTGGAAGGACATCAAGGGC............................2211.00100100000000
...........GTCACGTCGGTTGCGATTTTCGA..................................................................................................................................................................2311.00100000010000
...................................................................................................................................................CTCTGGAAGGACATCAAGGGCAAATACGA....................2911.00100000010000
.........................GATTTTCGAGGGCATCAACAAAG....................................................................................................................................................2311.00100000010000
.......................GCGATTTTCGAGGGCATCAACAAA.....................................................................................................................................................2411.00100000010000
.........ATGTCACGTCGGTTGCGATTT......................................................................................................................................................................2111.00100000010000
...............................................................................................................................................................ATCAAGGGCAAATACGAAT..................1911.00100000010000
.....................................................................................................................................................CTGGAAGGACATCAAGGGCA...........................2011.00101000000000
.CGCCATCGATGTCACGTCGG...............................................................................................................................................................................2011.00100000100000
.........ATGTCACGTCGGTTGCGATTTTCGA..................................................................................................................................................................2511.00100000010000
................................................................................................................................................................TCAAGGGCAAATACGAATAAATC---------....2311.00100000010000
..............................................................................................................................................................CATCAAGGGCAAATACGAATA.................2111.00100000010000
.................TCGGTTGCGATTTTCGAGG................................................................................................................................................................1911.00101000000000
....................GTTGCGATTTTCGAGGGCATC...........................................................................................................................................................2111.00100000010000
..........................ATTTTCGAGGGCATCAACAAAG....................................................................................................................................................2211.00101000000000
................................................................................................................................................AAACTCTGGAAGGACATCAAGGG.............................2311.00101000000000
droEre2
GCGCCATCGATGTCACGTCGGTTGCGATTTTCGAGGGCGTCAACAAAGGCGTAAGTA--------TAAT-CCCATTATGTAAGCAAAG-TTTCCTGGC--CAA----A-TCTCAAG--------T-T-TTT--CCCCTTTGCAGAAACTCTGGAAGGACATCAAGGGCAAATACGAATAAATC---------ACCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........GATGTCACGTCGGTTGCGATTTTCGA..................................................................................................................................................................2617.0071000600
.....ATCGATGTCACGTCGGTTGC...........................................................................................................................................................................2015.0051000040
.........................GATTTTCGAGGGCGTCAACAAAGGCA.................................................................................................................................................2614.0040000310
........GATGTCACGTCGGTTGCGAT........................................................................................................................................................................2013.0030000300
......TCGATGTCACGTCGGTTGC...........................................................................................................................................................................1913.0030000210
.........................GATTTTCGAGGGCGTCAACAAAGGC..................................................................................................................................................2513.0031100010
.........................GATTTTCGAGGGCGTCAACA.......................................................................................................................................................2012.0021000100
...............................................................................................................................................................ATCAAGGGCAAATACGAATA.................2012.0020000200
...............................................................................................................................................................ATCAAGGGCAAATACGAATAAATC---------ACCA2812.0020000110
................................................................................................................................................................TCAAGGGCAAATACGAATA.................1912.0021000100
...................GGTTGCGATTTTCGAGGGC..............................................................................................................................................................1912.0020101000
............................................................................................................................................................GACATCAAGGGCAAATACGA....................2011.0010000100
.....ATCGATGTCACGTCGGTTGCGATT.......................................................................................................................................................................2411.0010000100
........GATGTCACGTCGGTTGCGATTTTC....................................................................................................................................................................2411.0010000100
..........................ATTTTCGAGGGCGTCAACAAAGGCA.................................................................................................................................................2511.0010100000
.................................................................................................................................................AACTCTGGAAGGACATCAA................................1911.0011000000
.............CACGTCGGTTGCGATTTTCGAGGG...............................................................................................................................................................2411.0010000100
...............CGTCGGTTGCGATTTTCGAGG................................................................................................................................................................2111.0010100000
..................................................................................................................................................ACTCTGGAAGGACATCAAGGGC............................2211.0010001000
.........................GATTTTCGAGGGCGTCAACAA......................................................................................................................................................2111.0010000100
.....ATCGATGTCACGTCGGTTGCGATTTTCG...................................................................................................................................................................2811.0011000000
.........................GATTTTCGAGGGCGTCAACAAA.....................................................................................................................................................2211.0011000000
...........GTCACGTCGGTTGCGATTTTCGA..................................................................................................................................................................2311.0010000100
...CCATCGATGTCACGTCGGT..............................................................................................................................................................................1911.0010000010
..............................................................................................................................................................CATCAAGGGCAAATACGAAT..................2011.0010000010
........GATGTCACGTCGGTTGCGA.........................................................................................................................................................................1911.0010001000
.....ATCGATGTCACGTCGGTTGCGATTTTCGA..................................................................................................................................................................2911.0010100000
.........................................................................................................................................................AAGGACATCAAGGGCAAA.........................1811.0010000100
.............................TTCGAGGGCGTCAACAAAGGCA.................................................................................................................................................2211.0010000100
.................................................................................................................................................AACTCTGGAAGGACATCAAGGGCAA..........................2511.0011000000
............................TTTCGAGGGCGTCAACAAAGGC..................................................................................................................................................2211.0010001000
.....................TTGCGATTTTCGAGGGCGTC...........................................................................................................................................................2011.0010010000
........GATGTCACGTCGGTTGCGATTTT.....................................................................................................................................................................2311.0010100000
...........................TTTTCGAGGGCGTCAACAAAGGC..................................................................................................................................................2311.0010000010
........GATGTCACGTCGGTTGCGATT.......................................................................................................................................................................2111.0010000100
............................TTTCGAGGGCGTCAACAAAG....................................................................................................................................................2011.0011000000
................GTCGGTTGCGATTTTCGAGG................................................................................................................................................................2011.0011000000
........GATGTCACGTCGGTTGCG..........................................................................................................................................................................1811.0010001000
.........................GATTTTCGAGGGCGTCAACAAAGG...................................................................................................................................................2411.0010000010
..........................ATTTTCGAGGGCGTCAACAAAGGC..................................................................................................................................................2411.0011000000
...............................................................................................................................................................ATCAAGGGCAAATACGAAT..................1911.0010000100
.........................GATTTTCGAGGGCGTCAAC........................................................................................................................................................1911.0010000100
......................................................................................................................................................TGGAAGGACATCAAGGGCAA..........................2011.0011000000
.............................................................................................................................................................ACATCAAGGGCAAATACGA....................1911.0011000000
GCGCCATCGATGTCACGT..................................................................................................................................................................................1811.0011000000
........................CGATTTTCGAGGGCGTCAACAAAGG...................................................................................................................................................2511.0011000000
.........................GATTTTCGAGGGCGTCAACAAAG....................................................................................................................................................2311.0011000000
.................................................................................................................................................AACTCTGGAAGGACATCAAGG..............................2111.0011000000
...............................CGAGGGCGTCAACAAAGGCAA................................................................................................................................................2120.5011000000

Generated: 05/16/2015 at 08:37 PM