ID:

dvi_7202

 Coordinate:

scaffold_12875:16003795-16003945 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-47.1 -47.0 -47.0

Flybase annnotation

CDS [Dvir\GJ20159-cds]; exon [dvir_GLEANR_5611:2]; intron [Dvir\GJ20159-in]

Repeatable elements

NameClassFamilyStrand
(CTG)nSimple_repeatSimple_repeat+
mature
  1. scaffold_12723:4622693-4622714 -
  2. scaffold_12875:4860437-4860458 -
  3. dvi_7202  scaffold_12875:16003868-16003889 -
  4. scaffold_12932:779006-779027 -
  5. scaffold_12963:6529455-6529476 -
  6. scaffold_12963:8474446-8474467 -
  7. scaffold_12963:18448555-18448576 -
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTGCTGGCGGGGGTTGGTGGTGGTTGGTGGCAATTGCAATGCTGGCAACAACTGGCGCTAGGGTTGCGTGCCGCTATGTGGAAATCTGGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACGTCGGCAGCGGCAGCAACAGCGACACACTTCCAGTCACTTGTATTTTGACGTTAAATTCCAATGGCGCCTTGCAGCCATCCAGCGGCAGCAACAACAGCAGCTCGTTGCATGTGCAGCGCCAGGA
**************************************************...((((((((((((((.(((((((..((.((....((...((.((.((.((.((....)).)).)).)).))..)))).))))))))))))))((.(((.........))).))...................))..)))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 SRR060666
160_males_carcasses_total
 V116
male body		 M047
female body
 SRR060672
9x160_females_carcasses_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060679
140x9_testes_total
 SRR060670
9_testes_total
.....................................................................................................................................................................................................................AGCAACAACAGCAGCTCGT................... 19 0 2 0.50 1 0 1 0 0 0 0 0 0
.......CGGGGGATGGTGGTTGTTG................................................................................................................................................................................................................................. 19 2 3 0.33 1 1 0 0 0 0 0 0 0
.......CGGGGCATGGTGGTGGTTG................................................................................................................................................................................................................................. 19 2 4 0.25 1 1 0 0 0 0 0 0 0
...................GTGCTTGCTGGCGATTGCAAT................................................................................................................................................................................................................... 21 3 6 0.17 1 0 0 1 0 0 0 0 0
..........................................................................................................GCAGCAGCAGCAGCAGCGACGT........................................................................................................................... 22 0 7 0.14 1 0 0 0 0 1 0 0 0
............................................................................................................................ACGTCAGCAGCGGCAGCAACAG......................................................................................................... 22 1 8 0.13 1 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................CAGCGGCACCAACAACAGCAG........................ 21 1 10 0.10 1 0 0 0 1 0 0 0 0
......................................................................................................................................CGGCAGCAACAGCAGCACACT................................................................................................ 21 2 13 0.08 1 0 0 0 0 0 0 1 0
...CGGGCGGTGGTTGGTGATGG.................................................................................................................................................................................................................................... 20 3 16 0.06 1 1 0 0 0 0 0 0 0
..................GGTGCTTGCTGGCGATTGCA..................................................................................................................................................................................................................... 20 3 18 0.06 1 0 0 0 1 0 0 0 0
.....TGCGGGGGTTGGTTGTGGAT.................................................................................................................................................................................................................................. 20 3 19 0.05 1 1 0 0 0 0 0 0 0
.........................................................................................TAGCAGCAGCAGCAGCAGCAGCA........................................................................................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

AACGACCGCCCCCAACCACCACCAACCACCGTTAACGTTACGACCGTTGTTGACCGCGATCCCAACGCACGGCGATACACCTTTAGACCATCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGCTGCAGCCGTCGCCGTCGTTGTCGCTGTGTGAAGGTCAGTGAACATAAAACTGCAATTTAAGGTTACCGCGGAACGTCGGTAGGTCGCCGTCGTTGTTGTCGTCGAGCAACGTACACGTCGCGGTCCT
**************************************************...((((((((((((((.(((((((..((.((....((...((.((.((.((.((....)).)).)).)).))..)))).))))))))))))))((.(((.........))).))...................))..)))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060662
9x160_0-2h_embryos_total
 V116
male body		 V053
head
 SRR060683
160_testes_total
 SRR060668
160x9_males_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 GSM1528803
follicle cells		 SRR060677
Argx9_ovaries_total
..........................................................................................................................................TCGTTGTCGCTGAGTGAA............................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................GAGCGTCAGTAGGTCGCCGTCGTT................................. 24 2 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................GGTAGGTCGCCGTCGCTGTT.............................. 20 1 3 0.33 1 0 0 1 0 0 0 0 0
.................................AACGTTAAGACCGTTCTGGA...................................................................................................................................................................................................... 20 3 14 0.14 2 0 0 0 0 1 1 0 0
.....................................TTACGACCGTTGATTCCCGC.................................................................................................................................................................................................. 20 3 12 0.08 1 0 0 0 1 0 0 0 0
..........................................................................................................CGTCGTCGTCGTCGTCGCTGC............................................................................................................................ 21 0 20 0.05 1 0 0 0 0 0 0 0 1
..................................................................................................GTCGTCGTCGTCGTCGTCGTCGTCG................................................................................................................................ 25 0 20 0.05 1 0 0 0 0 0 0 1 0
...........................................................................................................................................CGTTGTCGCTGAGTGAACT............................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:16003745-16003995 - dvi_7202 TTGC-T-GGC---------GGGGGT----T---------------GGTG-GTG------------------------------G--T--TG-------------------------------------------------------------------GTGGCAATTGCAA---------------------------------------------------------------------------TGCTGGCAA------------------CAACTGGCGCT-----AGGGTTGCGTGCCGCTATGTGGAAA-TCT------------GGTA-------GCAGCAG---CAGCAGCAGCAGCAGC-------------------------------------------------A--------------------------------------------------GCAGCAGCGACGTCGGC---------AGCG---GCAGC--------------------------------------------------AACAGCGACAC--------------ACTTCCAG------------------------------TCACTTGTATTTTGACG---TTA-AATTCCAATGGC------GC------------------------------------------CTTGCAGCCATCCAGCGGCAGCAACA---------------------------ACA---GC---AG------------------CT-----------------CGTTGCATGTGCAGCGCCAGGA
droMoj3 scaffold_6496:7779711-7779931 + TCGG-CAGGCGGGGTGGTTGGTGGT----T------------------------------------------------------------G----------------------------------------------------------------------GCCATTGCAA---------------------------------------------------------------------------TGCTGGCAG------------------CAGCGAGCGCT-----AGGGTTGCGTGCCGCTATGTGGAAA-TCT------------GCTA-------GCAGCAGCAG---CA---------GC-------------------------------------------------A-----------------------------------------------------GCAGCGACGTCGAC------------AGCAACAAC--------------------------------------------------GACAGCGACAC--------------ACTTCCAG------------------------------TTGCTCGTATTTTGACG---TCA-AATTCCAATGGC------GC------------------------------------------CTTGCAGCCATCCAGCGGCAGCAACAGCAA---CA------------ACA---GCA---AC---AG-----------------------------------------------------------
droGri2 scaffold_15245:12805094-12805338 - TTGC-T-GGC---------GGGGGT----T---------------GGT-----------------------------------------CG-------------------------------------------------------------------GTGGCAACTGCAA---------------------------------------------------------------------------TGTGGGCAT------------------CAACGGGCGCT-----AGGGTTGCGTGCCGCTATGTGGAAA-TCT------------GGTA-------GCAGCAACAGCAATA---------GC-------------------------------------------A-----------------------------------------------------------GCAGCGACGCTGGC---------AGCG---GCAGC--------------------------------------------------AACAGCGACAC--------------ACTTCCAG------------------------------TTACTTGTATTTTGACA---TCA-AATTCCAATGGC------GC------------------------------------------CTTGCAGCCATCCAGTGGCAGCGACAGCAG---CA------------GCA---GCA---GC---AG------------------CT-----------------CGTTGCATGTGCAGCGCCAGGA
droWil2 scf2_1100000004822:2704236-2704467 + TTGC-A-A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGGAAAATC-------------AACAG-------AAGCAA---CAGCA---------GCAGT---AGCA---------------GC----------------------A--------------------------------------------------GCAGCAGCAACAACAGCAGCAGCAGCAC---CAGCAGCAATATCAACA--------------------GAGGCATCGACTGCGACGCCAACAGCGACAC--------------ATTTCCAA------------------------------C------TGTTTTGACGTCGTCA-AGTTCCAATGGC------GC------------------------------------------CTTGCAGCCATCCACATCCA----------------AATCTACATCCACA---T--------------------------C-----CAGCTCCAGCTCCTTGCCGTTGCATGTGCAG---CACCA
dp5 XL_group1a:6887727-6887940 + TTTC-T-GCC---------ATAAGT----T---------------GGGGGGAGC--AGGAATTCCA--------------A----AATTGTC------------TCGA-------------GGGGT-GC-----------CCTGT----------------------------------------------------------ACGCTGTGCC-------CA--G---AAG--------------C----------AGTACCAGAAGCAG-----------------------------------------------------------------CA-------------GCAACAGCAGCCACAGCAGCAGCAGCCACA----G--CAGCAGCAGCAATACCAG-------------------CAACAGCAGGAGCAGCAGCAGCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACAGCAGCAGCAGCAATACCAGCA------------------------A---------------CA------------GCAGTACC---------------------------------------------------------AGCAGGAGCAGGA
droPer2 scaffold_0:6850691-6850944 - TCGC-A-GGA---------GGATAG----C---------------AGTG-ATA--------------------------------AT--TG------------------TTGCTGCCTGG-------------------------------------------------AG---------------------------------------------------------------------------GAGGTGCCC------------------CCAATAGCACC-----AGGGGAGGGCGCCCCAGTGGCAACA-G-------------------CAACAGGAGGAGCCAG---------------C-------------------------------------------A---GCAGC---------------------AGCAGTGGAAACTGC--------------------------------------AGC-----CGAT--------------------------------------------------TGCAGCAATTG--------------ATTTCCAC-----------------------G------CCGCCAGTATTATTGCG---TAG-ATCTTCGCTGTC------GCCG-------------CCGCAC------------------------------------CAGCAG------------CACCACCAGCATCCACA---A--------------------------G-----GGGGCAACTCTCCTTTGCG--CCACCTTCCGCCACAAGC
droAna3 scaffold_13337:10618362-10618580 - TGGC-A-GTG---------GTGGGT----C------------------------------------------------CAGTGGCG----TGTG--------GGCCTTGCAACAGCAGCAACAGGCGGC-----------ATTGCAC-------------------------------------------------------------------------CA--C---CAC--------------C----------AGCAACAACAGCAG-----------------------------------------------------------------CA-------------GCAACAGCAGCAACAACAGCAGCAGCACCA------------------ACAGCACTTGCA-------GCAACAGCAGCAGCACGCAC-----------------------------------------------------------------------------------------------------------------------------------------------ATCACCAG----------------------------------------CATGTAGCTGCCG-TGTTGC---------------------------------------------------------------------------AGCAGCAGCAG---CAACAGCAGCAACCGCA--------------------------------------------------------TGCAC-TCCATCAGCAGCA
droBip1 scf7180000396589:208368-208620 - TTGC-T-GCG---------AGGTGG----G---------------GGTG-GTGG--TGGAGGTGCA--------------A----ACGCAGT------------TCGGGCC--------AAAAAGCGAA-----------AGCGT------CTAATGA------------------------------------------------------------------CCAACGGCGGCGGTCTGGCAGT----------AGCGG----T---CCA---------------------------------GCAGCAACA-G-------------------CAGCAC-------GGCCAACA---------CC---------ATCACAGTGCG-----GCT------GCGGTGGCT-------GCAGCAGCGGCAGCTGCCG----------------TC--------------------------------------------CACCAGC--------------------------------------------------AGCAGCAGCAG--------------GCGGCC-------------------------------------------------------------------------------------CAG---GTGC------------------------------------------AGCAGCAACACCAACA------------GCAACAACAGCAGC---AG------------------GT-----------------GGCT-----GCCGTCGCCATGG
droKik1 scf7180000302817:455354-455604 - TTGT-G-GTT---------GTGAGG----T---------------GGCA-TT---A-----------------------------AGGGTG-------------------------------------------------------------------GCGGCGGTTGCA-----------------------------------------------------------------------------------------------------------------TAGAAGAGGGTTGCGTGCCGCAATGTGGGAAATC-------------AACAGCA-------GGAG---AAGCAGCA------GC-------------------------------------------AGTAGCA---------------------------GTG--------------------GCAGTGGCCGTACAGGC------------AGGAGCAGC--------------------------------------------------ACCAGCGACAC--------------ACTTCCAA------------------------------C------TGTTTTGACGTCGTCG-AGTTCCAATGGC------GCTGCTTCCACCGAATGCTGCAGC-GCAG--------------CCTTGCAGCCATCCAGCGGCG------------------------------------------------------AC---------G-----------------CGTTGCATGTGCAGCAGCAG--
droFic1 scf7180000454066:1598749-1599006 + TTGT-T-GTT---------GTTGTT----TCGCCAGGATGGACGGGGC----CTTC-----------------------------GGGGT----------------------------------------------------------------------GGTGGTTGCA-----------------------------------------------------------------------------------------------------------------T-----AGGGTTGCGTGCCGCAATGTGGGAAATC-------------AACAGCAGTAGAAGTAG-CAGCA------------GC-------------------------------------------------A-----------------------------------------------------------GCAGCAGCCGAAGCAGCAGCA---GCAGCAACATTGCCACAT--------------------------------------CCAGAGGCAC--------------ACTTCCAA------------------------------C------TGTTTTGACGTGGTCG-AGTTCCAATGGC------GCTGCCACAACCGAATGCTGTAGC-GCAG--------------CCTTGCAGCCATCCAGCGGCG------------------------------------------------------AC---------G-----------------CGTTGCATGTGCAG--------
droEle1 scf7180000491338:912583-912841 - TTTA-G-AGC---------GGTGCC----A---------------A---------------------------------------------------------------------------------------------------------TTAGTGG------------------------------------------------------------------CCAACAG--------------C----------AGCAACAACAGCAGCAGCAAC-AGCACC-----AGCAGCTCGTGCA------------------------------------------------------------------------------------------GCAGCAATTGCTAGCCCA-------GCAGCAGCAGCAACTGCAGA---------------TC--------CAGCAGCTGCAGCAACAATTG-----------------------------------------------------------------------------CTGCTGCAGCGACTCGAGCGTGA--------------G---------TTGCAGCAGAACTACTCGTGT-------------CTGCGGC------AACG-------------------TTG--------------GCTCACCGACTACGCAGCCCCCCACCAGCAGCAGCAGCATCTGGT------------CCAGCAGCA---GC---AG------------------CT-----------------CT--------------TCGCGG
droRho1 scf7180000777779:9609-9840 + TCGC-T-GGA---------GGAGAT----C---------------GGGG-GA----------------------------A----AGGCTGG------------CGGAGCGAGAGAGTCAATGTGCTGCGACCGCTGGAGCTTCTATCTTTCTAATCT------------------------------------------------------------------CCACCAG--------------C----------AACAGCAACAGCACCA------------------------------------------------------------------------------GTAACAGCAGCAACACAAGCTGCAACA------------------GCAACAACAAGGGCA-------GTAACAGCAGCAACTCAAGC---------------TG-----------------------------------------------CAAT--------------------------------------------------AGCAACA-----------------------------------------------------------------------------------------------------------ACCAAAGGATT----------------------------------------GACAGCAACAACACAAGCT------------GCAACAGCAACAAC----------------------------------------------------------CAGGGA
droBia1 scf7180000302075:5299603-5299847 - TTGC-T-GGC---------AGCGCTGAGAC---------------AGT----G------------------------------G--T--CA-------------------------------------------------------------------G---C------GA-----------------------------------------------GATGCAT---------------------CACCAACAGCAGCAGCAGC---AAATGTTGC-CGTTG-----------------------------------------------------------CAC---CAACA------------TC------AGCA------------------GCAACAACAGCTCCA-------GCAGCAGCAGCATCATCAGT---------------TT-----------------------------------------------TTCC--------------------------------------------------AGCAGCAACAG-----------ACGAAAT-----------------------TTGTATCG---CGGGTCG-------------TTACAAGTGC------AACG-------------------GTGCAGCAGCAACATCATCA------------------------G---------------CA------------GCAGCAGCAGCAGC---AGCATACGCAACA----G----------------AT----A--TTACCAGCTGGCTTGGTA
droTak1 scf7180000415383:457999-458220 - GC---T-GGC---------GGAGGA----C------------------------------------------------GAGTGGCT----GGCGCCCAGTTTGCTCGTGTAGCTGCCATGAGGGATGGC-----------CATGTAT-------------------------------------------------------------------------CC--CACACAG--------------C----------AGCAGCAGCAGCAA------------------------------------------------------------------------------CAGCAACA---------GC-------------------------------------------A---GCA--------------------------------------------------------GCAACAGCAG---------CTGCAGCAGCAAC--------------------------------------------------ATGAGCAGCAG--------------ACGTCCGGGGAGTATGTGAAGGAGCAG----------------------------------------------------------CCCTACCAATCGCAGCAGCTGCAGCATCAACA------------------------A---------------CT------------GCAGCAGCA---------------------------------------------------------GCAGCCCCACAA
droEug1 scf7180000409787:1536782-1537000 - GC---T-GGC---------GGAGGA----C------------------------------------------------GAGTGGCT----GGCGCCCAGTTTGCTCGTGTAGCTGCCATGAGGGATGGC-----------CATGTAT-------------------------------------------------------------------------CC--CACACAA--------------C----------AGCAGCAACAGCAA---------------------------------------------------------------------------------CA------------GC-------------------------------------------AGCAGCA--------------------------------------------------------GCAACAGCAG---------CTGCAGCAACAAC--------------------------------------------------ATGAGCAACAG--------------ACGTCCGGGGAATATGTGAAGGAGTTG----------------------------------------------------------CCCTACCAGACGCAGCAGCTGCAGCACCACCA------------------------A---------------TT------------GCAGCAGCA---------------------------------------------------------GCAGCCCCACAA
dm3 chr3L:10847603-10847893 - TTGA-G-GGG---------GGCCT----------------------GTG-AT---G--A-------GGGGGGGGGGGTGGGCAGCT----TGCCCCCAAGG---------------------------------------------------------------------------------------GGAGTTAGGAAGCTGATGTTGCTGCTGGAAGAAGAACTCACAG--------------C----------AGCAGCAGCAGCAACACTCAA-AGCAG--------------------------------------------------------------------CAACA---------ACATT---AGCA---------------ACAGCAACACCAAAGCCA-------GCAG---CAACAACACTTGC--------------------------------------------------------------AGCAAC--------------------------------------------------ATCAACAACAA--------------ATGTTGAGATTACG--------------------------------------------TTG-AAAGTAACTGCCAACGGGGG---------------C------AGAGACGCCAGCA------------------------G---------------CA------------GCAGCAACA---GCAGCAGAAT--GCAACG----C----------------ATTTG-G--ACGAGTGCAGCACTAAAA
droSim2 3r:23449501-23449723 + TTTAGCTGGC---------GGAGGA----C------------------------------------------------GAGTGGCT----GGCGCCCAGTCTGCTCGTGTAGCTGCCATGAGGGATGGC-----------CATGTAT-------------------------------------------------------------------------CC--CACACAG--------------C----------AGCACCAGCAGCAG------------------------------------------------------------------------------CAACAACA---------GC-------------------------------------------A---GCA-----------------------------------------------------GCAGCAGCAGATG---------CTGCAGCAGCAAC--------------------------------------------------ATGAGCAGCAG--------------ACGTCCGGCGAATATGTGAAGGAGCCG----------------------------------------------------------CCCTACCAATCGCAGCAGCTGCAGCACCACCA------------------------A---------------CT------------GCAGCAGCA---------------------------------------------------------------GCAGCA
droSec2 scaffold_8:1720635-1720857 - GTC----GGT---------GGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGCAG--------------C----------AGCAGCAACAACAACAGCAGCAGGCGCA-----ACAGTTG----CCGCCGGGTGTTGG-AGTTGCCAGTCCGCT-----------GCAGCAG---------------------------------------------CAGCAACAGCAG---CA-------GCAGCAACAGCAACAGCAGC---AGCAGCAGCAACAGCAGCTGATC-----------------------------------------------------------------------------------------------AAC---------------------------------------------------------------------------------------------AACGGAGG---------------C------GTCTCCGCCGGCACGC---CCACGCT---GCTCATCGGCA------------------------------------------------------ACGGACCCAGCT-----------------CGT--CCGGAGCGGGAACAGGA
droYak3 3R:12444404-12444655 + GCGG-T-GGC---------GGAGT-----C---------------GGTG-TC---G-----------------------------GTGGAT-------------------------------------------------------------------GTGGCAGCCACAACGTTGTCGCTGCCAGTCATGACCAGCTCACCAATGTTGCTGTCATGCAGCCAACATACGG--------------C----------AGTGGCAGCGGCT---------------------------------------------------------------------------------GCAACAGCAGCAGCATCAGCGGCTGCCACA---------------ACGGTAACAACGGCA-------GCGG---CGGCGGCATTTGCA--------------ATCAGCAGATCAACAACTACGGCAACAACAG-----------------------------------------------------------------------------CGGCAGCAATCATATGAGTGCAG--------------G---------CAG-------------------------------------------------------------------------------------------------------------------------------------------------TTTC------------------------------------------------------TTCGGCG---GGGCCA
droEre2 scaffold_4929:8256487-8256717 + CTGC-G-AGG---------AT--GG----A------------GGTGGT----GGCC-----------------------------GAGGT----------------------------------------------------------------------GGTGGTTGCA-----------------------------------------------------------------------------------------------------------------T-----AGGGTTGCGTGCCGCGATGTGGGAAATC-------------AACAGCA----------------ACA---------------------------------------------------------------------------------------------------------------------------------------------------------TTGCCACATCCACATCCACATCCACATCCAGA--------------TCCAGAGGCAC--------------ACTTCCAA------------------------------C------TGTTTTGACGTGGTCG-GGTTCCAATGGC------GCTGGCCCAACCGAATGCTGCAGC-GCAG--------------CCTTGCAGCCATCCAGCGGCG------------------------------------------------------AC---------G-----------------CGTTGCATGTGCAGCAGCAGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TTGC-T-GGC---------GGGGGT----T---------------GGTG-GTG------------------------------G--T--TG-------------------------------------------------------------------GTGGCAATTGCAA---------------------------------------------------------------------------TGCTGGCAA------------------CAACTGGCGCT-----AGGGTTGCGTGCCGCTATGTGGAAA-TCT------------GGTA-------GCAGCAG---CAGCAGCAGCAGCAGC-------------------------------------------------A--------------------------------------------------GCAGCAGCGACGTCGGC---------AGCG---GCAGC--------------------------------------------------AACAGCGACAC--------------ACTTCCAG------------------------------TCACTTGTATTTTGACG---TTA-AATTCCAATGGC------GC------------------------------------------CTTGCAGCCATCCAGCGGCAGCAACA---------------------------ACA---GC---AG------------------CT-----------------CGTTGCATGTGCAGCGCCAGGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACA---------------------------ACA---GC---AG------------------CT-----------------CGT...................1920.501000000000000000010000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................GCAGCAGC-------------------------------------------------A--------------------------------------------------GCAGCAGCGACGT.............................................................................................................................................................................................................................................................................................................................................................2270.141000000000000000000000010000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................TA-------GCAGCAG---CAGCAGCAGCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000001000000000000000000000000000000000000000000
droMoj3
TCGG-CAGGCGGGGTGGTTGGTGGT----T------------------------------------------------------------G----------------------------------------------------------------------GCCATTGCAA---------------------------------------------------------------------------TGCTGGCAG------------------CAGCGAGCGCT-----AGGGTTGCGTGCCGCTATGTGGAAA-TCT------------GCTA-------GCAGCAGCAG---CA---------GC-------------------------------------------------A-----------------------------------------------------GCAGCGACGTCGAC------------AGCAACAAC--------------------------------------------------GACAGCGACAC--------------ACTTCCAG------------------------------TTGCTCGTATTTTGACG---TCA-AATTCCAATGGC------GC------------------------------------------CTTGCAGCCATCCAGCGGCAGCAACAGCAA---CA------------ACA---GCA---AC---AG-----------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................AGCAG---CA---------GC-------------------------------------------------A-----------------------------------------------------GCAGCGACGT.............................................................................................................................................................................................................................................................................................................................................................2070.141100000
......................................................................................................................................................................................................................................................................................................................................................CAGCAGCAG---CA---------GC-------------------------------------------------A-----------------------------------------------------GCAGCGAC...............................................................................................................................................................................................................................................................................................................................................................22200.051010000
.......................................................................................................................................................................................................................................................................................................................................................AGCAGCAG---CA---------GC-------------------------------------------------A-----------------------------------------------------GCAGCGAC...............................................................................................................................................................................................................................................................................................................................................................21200.051100000
droGri2
TTGC-T-GGC---------GGGGGT----T---------------GGT-----------------------------------------CG-------------------------------------------------------------------GTGGCAACTGCAA---------------------------------------------------------------------------TGTGGGCAT------------------CAACGGGCGCT-----AGGGTTGCGTGCCGCTATGTGGAAA-TCT------------GGTA-------GCAGCAACAGCAATA---------GC-------------------------------------------A-----------------------------------------------------------GCAGCGACGCTGGC---------AGCG---GCAGC--------------------------------------------------AACAGCGACAC--------------ACTTCCAG------------------------------TTACTTGTATTTTGACA---TCA-AATTCCAATGGC------GC------------------------------------------CTTGCAGCCATCCAGTGGCAGCGACAGCAG---CA------------GCA---GCA---GC---AG------------------CT-----------------CGTTGCATGTGCAGCGCCAGGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................................................................................................................................................................................................................................................................................................................CT------------GGTA-------GCAGCAACAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110
droWil2
TTGC-A-A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGGAAAATC-------------AACAG-------AAGCAA---CAGCA---------GCAGT---AGCA---------------GC----------------------A--------------------------------------------------GCAGCAGCAACAACAGCAGCAGCAGCAC---CAGCAGCAATATCAACA--------------------GAGGCATCGACTGCGACGCCAACAGCGACAC--------------ATTTCCAA------------------------------C------TGTTTTGACGTCGTCA-AGTTCCAATGGC------GC------------------------------------------CTTGCAGCCATCCACATCCA----------------AATCTACATCCACA---T--------------------------C-----CAGCTCCAGCTCCTTGCCGTTGCATGTGCAG---CACCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................................................................................................................A---------GCAGT---AGCA---------------GC----------------------A--------------------------------------------------GCAGCAGCAACA..............................................................................................................................................................................................................................................................................................................................................................2550.20100010
...............................................................................................................................................................................................................................................................................................................................................................CAGCA---------GCAGT---AGCA---------------GC----------------------A--------------------------------------------------GCAG......................................................................................................................................................................................................................................................................................................................................................................21200.10202000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACAGCAGCAGCA..................................................................................................................................................................................................................................................................................................................................................20200.10200011
...............................................................................................................................................................................................................................................................................................................................................................CAGCA---------GCAGT---AGCA---------------GC----------------------A--------------------------------------------------GCAGCAG...................................................................................................................................................................................................................................................................................................................................................................24110.09100010
..........................................................................................................................................................................................................................................................................................................................................................AA---CAGCA---------GCAGT---AGCA---------------GC----------------------A--------------------------------------------------..........................................................................................................................................................................................................................................................................................................................................................................19130.08100010
..........................................................................................................................................................................................................................................................................................................................................................AA---CAGCA---------GCAGT---AGCA---------------GC----------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................18130.08100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAGCAGCAGCA..................................................................................................................................................................................................................................................................................................................................................19200.05100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAC---CAGCAGCA...................................................................................................................................................................................................................................................................................................................................23200.05100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAACAGCAGCAGCAGCA...............................................................................................................................................................................................................................................................................................................................................26200.05101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................18200.05100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAGCAC---CA.........................................................................................................................................................................................................................................................................................................................................18200.05100100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACAGCAGCAGCA..................................................................................................................................................................................................................................................................................................................................................21200.05100010
................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------------------------------------------GCAGCAGCAACAACAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................22200.05101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAC---CAGCA......................................................................................................................................................................................................................................................................................................................................19200.05100010
.............................................................................................................................................................................................................................................................................................................................................................................GCAGT---AGCA---------------GC----------------------A--------------------------------------------------GCAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................21200.05100010
dp5
TTTC-T-GCC---------ATAAGT----T---------------GGGGGGAGC--AGGAATTCCA--------------A----AATTGTC------------TCGA-------------GGGGT-GC-----------CCTGT----------------------------------------------------------ACGCTGTGCC-------CA--G---AAG--------------C----------AGTACCAGAAGCAG-----------------------------------------------------------------CA-------------GCAACAGCAGCCACAGCAGCAGCAGCCACA----G--CAGCAGCAGCAATACCAG-------------------CAACAGCAGGAGCAGCAGCAGCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACAGCAGCAGCAGCAATACCAGCA------------------------A---------------CA------------GCAGTACC---------------------------------------------------------AGCAGGAGCAGGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------GCAGTACC---------------------------------------------------------AGCAGGAGC....1920.5010000001000
.............................................................................................................................................................................................................................................................................G-----------------------------------------------------------------CA-------------GCAACAGCAGCCACAGCAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.5010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACAGCAGCAGC.................................................................................................................................................2120.5010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACAGC.......................................................................................................................................................1840.2510010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGGAGCAGCAGCAGCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...............................................................................................................................................................2040.2510100000000
.................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCCACAGCAGCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2350.2010100000000
..............................................................................................................................................................................................................................................................................................................................................................GCAACAGCAGCCACAGCAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2260.1710100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................AG-------------------CAACAGCAGGAGCAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................2160.1710100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................G-------------------CAACAGCAGGAGCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................18110.0910100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAGCAGCAGCAGCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G..............................................................................................................................................................18120.0810100000000
................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCCACA----G--CAGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................21140.0710000100000
....................................................................................................................................................................................................................................................................................................................................................................................CAGCCACA----G--CAGCAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................................................CAGCCACAGCAGCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
droPer2
TCGC-A-GGA---------GGATAG----C---------------AGTG-ATA--------------------------------AT--TG------------------TTGCTGCCTGG-------------------------------------------------AG---------------------------------------------------------------------------GAGGTGCCC------------------CCAATAGCACC-----AGGGGAGGGCGCCCCAGTGGCAACA-G-------------------CAACAGGAGGAGCCAG---------------C-------------------------------------------A---GCAGC---------------------AGCAGTGGAAACTGC--------------------------------------AGC-----CGAT--------------------------------------------------TGCAGCAATTG--------------ATTTCCAC-----------------------G------CCGCCAGTATTATTGCG---TAG-ATCTTCGCTGTC------GCCG-------------CCGCAC------------------------------------CAGCAG------------CACCACCAGCATCCACA---A--------------------------G-----GGGGCAACTCTCCTTTGCG--CCACCTTCCGCCACAAGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTG--------------ATTTCCAC-----------------------G------CCGCCA.............................................................................................................................................................................................................2011.001010000
droAna3
TGGC-A-GTG---------GTGGGT----C------------------------------------------------CAGTGGCG----TGTG--------GGCCTTGCAACAGCAGCAACAGGCGGC-----------ATTGCAC-------------------------------------------------------------------------CA--C---CAC--------------C----------AGCAACAACAGCAG-----------------------------------------------------------------CA-------------GCAACAGCAGCAACAACAGCAGCAGCACCA------------------ACAGCACTTGCA-------GCAACAGCAGCAGCACGCAC-----------------------------------------------------------------------------------------------------------------------------------------------ATCACCAG----------------------------------------CATGTAGCTGCCG-TGTTGC---------------------------------------------------------------------------AGCAGCAGCAG---CAACAGCAGCAACCGCA--------------------------------------------------------TGCAC-TCCATCAGCAGCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCAG----------------------------------------CATGTAGCTGCCG-TGTTGC---------------------------------------------------------------------------..........................................................................................................2611.001000001
.GGC-A-GTG---------GTGGGT----C------------------------------------------------CAGTGGCG----TGTG--------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
....................................................................................................................................................................................................................................................................ACAACAGCAG-----------------------------------------------------------------CA-------------GCAACAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.255050000
...............................................................................................................................................................................................................................................................................................................................................CA-------------GCAACAGCAGCAACAACAGCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................28100.101000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------------------------------------------------------------AGCAGCAGCAG---CAACAGC.....................................................................................19200.102020000
...............................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAACAACAGCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................25150.071010000
...............................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAACAACAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
.....................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACAGCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051100000
..............................................................................................................................................................................................................................................................................................................................................................GCAACAGCAGCAACAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000001
droBip1
TTGC-T-GCG---------AGGTGG----G---------------GGTG-GTGG--TGGAGGTGCA--------------A----ACGCAGT------------TCGGGCC--------AAAAAGCGAA-----------AGCGT------CTAATGA------------------------------------------------------------------CCAACGGCGGCGGTCTGGCAGT----------AGCGG----T---CCA---------------------------------GCAGCAACA-G-------------------CAGCAC-------GGCCAACA---------CC---------ATCACAGTGCG-----GCT------GCGGTGGCT-------GCAGCAGCGGCAGCTGCCG----------------TC--------------------------------------------CACCAGC--------------------------------------------------AGCAGCAGCAG--------------GCGGCC-------------------------------------------------------------------------------------CAG---GTGC------------------------------------------AGCAGCAACACCAACA------------GCAACAACAGCAGC---AG------------------GT-----------------GGCT-----GCCGTCGCCATGGSizeHit CountTotal NormTotal
No Reads
droKik1
TTGT-G-GTT---------GTGAGG----T---------------GGCA-TT---A-----------------------------AGGGTG-------------------------------------------------------------------GCGGCGGTTGCA-----------------------------------------------------------------------------------------------------------------TAGAAGAGGGTTGCGTGCCGCAATGTGGGAAATC-------------AACAGCA-------GGAG---AAGCAGCA------GC-------------------------------------------AGTAGCA---------------------------GTG--------------------GCAGTGGCCGTACAGGC------------AGGAGCAGC--------------------------------------------------ACCAGCGACAC--------------ACTTCCAA------------------------------C------TGTTTTGACGTCGTCG-AGTTCCAATGGC------GCTGCTTCCACCGAATGCTGCAGC-GCAG--------------CCTTGCAGCCATCCAGCGGCG------------------------------------------------------AC---------G-----------------CGTTGCATGTGCAGCAGCAG--SizeHit CountTotal NormTotal
No Reads
droFic1
TTGT-T-GTT---------GTTGTT----TCGCCAGGATGGACGGGGC----CTTC-----------------------------GGGGT----------------------------------------------------------------------GGTGGTTGCA-----------------------------------------------------------------------------------------------------------------T-----AGGGTTGCGTGCCGCAATGTGGGAAATC-------------AACAGCAGTAGAAGTAG-CAGCA------------GC-------------------------------------------------A-----------------------------------------------------------GCAGCAGCCGAAGCAGCAGCA---GCAGCAACATTGCCACAT--------------------------------------CCAGAGGCAC--------------ACTTCCAA------------------------------C------TGTTTTGACGTGGTCG-AGTTCCAATGGC------GCTGCCACAACCGAATGCTGTAGC-GCAG--------------CCTTGCAGCCATCCAGCGGCG------------------------------------------------------AC---------G-----------------CGTTGCATGTGCAG--------SizeHit CountTotal NormTotal
No Reads
droEle1
TTTA-G-AGC---------GGTGCC----A---------------A---------------------------------------------------------------------------------------------------------TTAGTGG------------------------------------------------------------------CCAACAG--------------C----------AGCAACAACAGCAGCAGCAAC-AGCACC-----AGCAGCTCGTGCA------------------------------------------------------------------------------------------GCAGCAATTGCTAGCCCA-------GCAGCAGCAGCAACTGCAGA---------------TC--------CAGCAGCTGCAGCAACAATTG-----------------------------------------------------------------------------CTGCTGCAGCGACTCGAGCGTGA--------------G---------TTGCAGCAGAACTACTCGTGT-------------CTGCGGC------AACG-------------------TTG--------------GCTCACCGACTACGCAGCCCCCCACCAGCAGCAGCAGCATCTGGT------------CCAGCAGCA---GC---AG------------------CT-----------------CT--------------TCGCGGSizeHit CountTotal NormTotal
No Reads
droRho1
TCGC-T-GGA---------GGAGAT----C---------------GGGG-GA----------------------------A----AGGCTGG------------CGGAGCGAGAGAGTCAATGTGCTGCGACCGCTGGAGCTTCTATCTTTCTAATCT------------------------------------------------------------------CCACCAG--------------C----------AACAGCAACAGCACCA------------------------------------------------------------------------------GTAACAGCAGCAACACAAGCTGCAACA------------------GCAACAACAAGGGCA-------GTAACAGCAGCAACTCAAGC---------------TG-----------------------------------------------CAAT--------------------------------------------------AGCAACA-----------------------------------------------------------------------------------------------------------ACCAAAGGATT----------------------------------------GACAGCAACAACACAAGCT------------GCAACAGCAACAAC----------------------------------------------------------CAGGGASizeHit CountTotal NormTotal
No Reads
droBia1
TTGC-T-GGC---------AGCGCTGAGAC---------------AGT----G------------------------------G--T--CA-------------------------------------------------------------------G---C------GA-----------------------------------------------GATGCAT---------------------CACCAACAGCAGCAGCAGC---AAATGTTGC-CGTTG-----------------------------------------------------------CAC---CAACA------------TC------AGCA------------------GCAACAACAGCTCCA-------GCAGCAGCAGCATCATCAGT---------------TT-----------------------------------------------TTCC--------------------------------------------------AGCAGCAACAG-----------ACGAAAT-----------------------TTGTATCG---CGGGTCG-------------TTACAAGTGC------AACG-------------------GTGCAGCAGCAACATCATCA------------------------G---------------CA------------GCAGCAGCAGCAGC---AGCATACGCAACA----G----------------AT----A--TTACCAGCTGGCTTGGTASizeHit CountTotal NormTotal
No Reads
droTak1
GC---T-GGC---------GGAGGA----C------------------------------------------------GAGTGGCT----GGCGCCCAGTTTGCTCGTGTAGCTGCCATGAGGGATGGC-----------CATGTAT-------------------------------------------------------------------------CC--CACACAG--------------C----------AGCAGCAGCAGCAA------------------------------------------------------------------------------CAGCAACA---------GC-------------------------------------------A---GCA--------------------------------------------------------GCAACAGCAG---------CTGCAGCAGCAAC--------------------------------------------------ATGAGCAGCAG--------------ACGTCCGGGGAGTATGTGAAGGAGCAG----------------------------------------------------------CCCTACCAATCGCAGCAGCTGCAGCATCAACA------------------------A---------------CT------------GCAGCAGCA---------------------------------------------------------GCAGCCCCACAASizeHit CountTotal NormTotal
No Reads
droEug1
GC---T-GGC---------GGAGGA----C------------------------------------------------GAGTGGCT----GGCGCCCAGTTTGCTCGTGTAGCTGCCATGAGGGATGGC-----------CATGTAT-------------------------------------------------------------------------CC--CACACAA--------------C----------AGCAGCAACAGCAA---------------------------------------------------------------------------------CA------------GC-------------------------------------------AGCAGCA--------------------------------------------------------GCAACAGCAG---------CTGCAGCAACAAC--------------------------------------------------ATGAGCAACAG--------------ACGTCCGGGGAATATGTGAAGGAGTTG----------------------------------------------------------CCCTACCAGACGCAGCAGCTGCAGCACCACCA------------------------A---------------TT------------GCAGCAGCA---------------------------------------------------------GCAGCCCCACAASizeHit CountTotal NormTotal
No Reads
dm3
TTGA-G-GGG---------GGCCT----------------------GTG-AT---G--A-------GGGGGGGGGGGTGGGCAGCT----TGCCCCCAAGG---------------------------------------------------------------------------------------GGAGTTAGGAAGCTGATGTTGCTGCTGGAAGAAGAACTCACAG--------------C----------AGCAGCAGCAGCAACACTCAA-AGCAG--------------------------------------------------------------------CAACA---------ACATT---AGCA---------------ACAGCAACACCAAAGCCA-------GCAG---CAACAACACTTGC--------------------------------------------------------------AGCAAC--------------------------------------------------ATCAACAACAA--------------ATGTTGAGATTACG--------------------------------------------TTG-AAAGTAACTGCCAACGGGGG---------------C------AGAGACGCCAGCA------------------------G---------------CA------------GCAGCAACA---GCAGCAGAAT--GCAACG----C----------------ATTTG-G--ACGAGTGCAGCACTAAAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................TAGGAAGCTGATGTTGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................A-------GGGGGGGGGGGTGGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAGCA------------------------G---------------CA------------GCAGCAACA---GC................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
TTTAGCTGGC---------GGAGGA----C------------------------------------------------GAGTGGCT----GGCGCCCAGTCTGCTCGTGTAGCTGCCATGAGGGATGGC-----------CATGTAT-------------------------------------------------------------------------CC--CACACAG--------------C----------AGCACCAGCAGCAG------------------------------------------------------------------------------CAACAACA---------GC-------------------------------------------A---GCA-----------------------------------------------------GCAGCAGCAGATG---------CTGCAGCAGCAAC--------------------------------------------------ATGAGCAGCAG--------------ACGTCCGGCGAATATGTGAAGGAGCCG----------------------------------------------------------CCCTACCAATCGCAGCAGCTGCAGCACCACCA------------------------A---------------CT------------GCAGCAGCA---------------------------------------------------------------GCAGCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................CCAGCAGCAG------------------------------------------------------------------------------CAACAACA---------GC-------------------------------------------A---...............................................................................................................................................................................................................................................................................................................................................................................................................................21131.1515000015000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCA------------------------A---------------CT------------GCAGCAGCA---------------------------------------------------------------GCA...2030.33100000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAAC--------------------------------------------------ATGAGCAG..........................................................................................................................................................................................................................................................................17100.10100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................CAACA---------GC-------------------------------------------A---GCA-----------------------------------------------------GCAGCAGCAGA............................................................................................................................................................................................................................................................................................................................................................22120.08100000000000100000
...................................................................................................................................................................................................................................................................ACCAGCAGCAG------------------------------------------------------------------------------CAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000000001000000
............................................................................................................................................................................................................................................................................................................................................................CAACAACA---------GC-------------------------------------------A---GCA-----------------------------------------------------GCAGCA.................................................................................................................................................................................................................................................................................................................................................................20200.05100010000000000000
droSec2
GTC----GGT---------GGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGCAG--------------C----------AGCAGCAACAACAACAGCAGCAGGCGCA-----ACAGTTG----CCGCCGGGTGTTGG-AGTTGCCAGTCCGCT-----------GCAGCAG---------------------------------------------CAGCAACAGCAG---CA-------GCAGCAACAGCAACAGCAGC---AGCAGCAGCAACAGCAGCTGATC-----------------------------------------------------------------------------------------------AAC---------------------------------------------------------------------------------------------AACGGAGG---------------C------GTCTCCGCCGGCACGC---CCACGCT---GCTCATCGGCA------------------------------------------------------ACGGACCCAGCT-----------------CGT--CCGGAGCGGGAACAGGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................................A-----ACAGTTG----CCGCCGGGTGTTGG-AGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000
.........................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAG---CA-------GCAGCAACAGCA................................................................................................................................................................................................................................................................................................................................................................................................................26180.0610010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGC---AGCAGCAGCAACAGC......................................................................................................................................................................................................................................................................................................................................................................................25200.0510010
...........................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAG---CA-------GCAGCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510010
droYak3
GCGG-T-GGC---------GGAGT-----C---------------GGTG-TC---G-----------------------------GTGGAT-------------------------------------------------------------------GTGGCAGCCACAACGTTGTCGCTGCCAGTCATGACCAGCTCACCAATGTTGCTGTCATGCAGCCAACATACGG--------------C----------AGTGGCAGCGGCT---------------------------------------------------------------------------------GCAACAGCAGCAGCATCAGCGGCTGCCACA---------------ACGGTAACAACGGCA-------GCGG---CGGCGGCATTTGCA--------------ATCAGCAGATCAACAACTACGGCAACAACAG-----------------------------------------------------------------------------CGGCAGCAATCATATGAGTGCAG--------------G---------CAG-------------------------------------------------------------------------------------------------------------------------------------------------TTTC------------------------------------------------------TTCGGCG---GGGCCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................TCATGCAGCCAACATACGG--------------C----------AGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACGGCAACAACAG-----------------------------------------------------------------------------CGGCAG.......................................................................................................................................................................................................................................................................2211.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCATCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.10202000000000
..............................................................................................................................................................................................................................................................................................................................................................GCAACAGCAGCAGCATCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10201000010000
..............................................................................................................................................................................................................................................................................................................................................................GCAACAGCAGCAGCATCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
droEre2
CTGC-G-AGG---------AT--GG----A------------GGTGGT----GGCC-----------------------------GAGGT----------------------------------------------------------------------GGTGGTTGCA-----------------------------------------------------------------------------------------------------------------T-----AGGGTTGCGTGCCGCGATGTGGGAAATC-------------AACAGCA----------------ACA---------------------------------------------------------------------------------------------------------------------------------------------------------TTGCCACATCCACATCCACATCCACATCCAGA--------------TCCAGAGGCAC--------------ACTTCCAA------------------------------C------TGTTTTGACGTGGTCG-GGTTCCAATGGC------GCTGGCCCAACCGAATGCTGCAGC-GCAG--------------CCTTGCAGCCATCCAGCGGCG------------------------------------------------------AC---------G-----------------CGTTGCATGTGCAGCAGCAGCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/16/2015 at 09:04 PM