ID:

dvi_7185

 Coordinate:

scaffold_12875:15877896-15878129 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.1 -25.9 -25.9

Flybase annnotation

exon [dvir_GLEANR_5618:17]; CDS [Dvir\GJ20164-cds]; CDS [Dvir\GJ20164-cds]; exon [dvir_GLEANR_5618:18]; intron [Dvir\GJ20164-in]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGCACAATCCTTGGATTCCGGTGCGAAGCCAACGCCGCCAGATAGTTCAAGTAAGCCAGGCCGTGCCTGAACTACCCGCACAACAACAAAAAAAAAACCACAAAACGCCAAAGATTCATTTAATATTTTTTCTTCAGTTGTTATTTCAAATAAAGCACATATTCATTGAGAAAAGCATAATACCAACTGCGCACTCATTCAAAATATCTTTTAGAAAATTCCAATTGGAATTCCAATTCAAATAATCGATCTAAAAACATTTGTATTATGTGTATTGTCCACAGTTATACTCATTGATGAGTATGAGGACTTCGAGGAGGAGGATCTGAACTGT
**************************************************(((...(((((...)))))...)))......((((((..((.(((((.............................))))).))..)))))).......((((.(((((((.....((((....(((..........)))...))))...........(((((((..(((..((((((....))))))..)))......)))))))..........))))))).))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M047
female body
 SRR060664
9_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060659
Argentina_testes_total
 SRR060665
9_females_carcasses_total
 M027
male body		 SRR060660
Argentina_ovaries_total
 SRR060670
9_testes_total
 SRR060673
9_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
......................................................................................................................................................................................................................................................................................................TGATGAGTGTGAGGACTTCGAAAA................ 24 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
........................GAAGCCAACGCCGCCAGATAGTT............................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................GAGGACTTCGAGGAGGAGGATT........ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................TGAGGACTTCGAGGAGGAGGATCT....... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................AACGCCGCCAGATAGTTCAA............................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGCCAGGCCGTGCCTGAA....................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................ATGAGGACTTCGAGGAGGAGGATCT....... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................CATTGATGAGTATGAGGACTTCGA................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................GAGGACTTCGAGGAGGAGGATCT....... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................AATTATACTCATTGATGAGT................................ 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................CATTGATGAGTATGAGGACTTCGAGGA................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................ATTGATGAGTATGAGGACTT...................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................GGACTTCGAGGAGGAGGATCT....... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................ATTGATGAGTATGAGGACTTCGA................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................ATTGAAAAGTATGAGGACGT...................... 20 3 6 0.50 3 1 0 0 0 0 0 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................ATGAGGACTTCGCGGCGGAGC........... 21 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....AATCATAGGATTCCGGTCC...................................................................................................................................................................................................................................................................................................................... 19 3 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................................................................................................TGGGACTGAGGACTTCGA................... 18 3 20 0.15 3 1 0 0 0 0 0 1 0 0 0 0 1 0
........................................................................................................................................................................................................................AATTCCCATTGGAATTCCCAGT................................................................................................ 22 3 8 0.13 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................................................................................TTGAAAAGTATGAGGACGT...................... 19 3 20 0.10 2 1 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................ACTGCGCACAAATTCAAAAAAT............................................................................................................................... 22 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................................................................................................................CATCGTGGATGAGGATCTGA..... 20 3 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AATGGGAGTGCCAATTCAAA............................................................................................ 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GCGTGTTAGGAACCTAAGGCCACGCTTCGGTTGCGGCGGTCTATCAAGTTCATTCGGTCCGGCACGGACTTGATGGGCGTGTTGTTGTTTTTTTTTTGGTGTTTTGCGGTTTCTAAGTAAATTATAAAAAAGAAGTCAACAATAAAGTTTATTTCGTGTATAAGTAACTCTTTTCGTATTATGGTTGACGCGTGAGTAAGTTTTATAGAAAATCTTTTAAGGTTAACCTTAAGGTTAAGTTTATTAGCTAGATTTTTGTAAACATAATACACATAACAGGTGTCAATATGAGTAACTACTCATACTCCTGAAGCTCCTCCTCCTAGACTTGACA
**************************************************(((...(((((...)))))...)))......((((((..((.(((((.............................))))).))..)))))).......((((.(((((((.....((((....(((..........)))...))))...........(((((((..(((..((((((....))))))..)))......)))))))..........))))))).))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 SRR060681
Argx9_testes_total
 SRR060677
Argx9_ovaries_total
 M047
female body
 SRR060659
Argentina_testes_total
 SRR060668
160x9_males_carcasses_total
 V047
embryo
 GSM1528803
follicle cells		 SRR060679
140x9_testes_total
 SRR060680
 9xArg_testes_total
 SRR060676
9xArg_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR060657
140_testes_total
 SRR060689
160x9_testes_total
 SRR060663
160_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
..............................................................................................TGTGGTGTTCTGTGGTTTCTAA.......................................................................................................................................................................................................................... 22 3 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................ACTCTTTTCGTAGTATGGTCGC.................................................................................................................................................. 22 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................GAGTAACTACTCATACTCCTGAAGCTCCT................ 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................ATGGTTGACGCGTGAGTAAGT..................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................GCGTGAGTAAGTTTTATAGAAA........................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................TTATTAGCTAGATTTTTGTAAACATAAT.................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................GCGGCGGTCTATCAAGTTCGT......................................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................CTTGTTATTGTTTTTTTTTTGGTGGTT...................................................................................................................................................................................................................................... 27 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................ATAGATTTTTGTAAACATA.................................................................... 19 1 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................TTATTGTTTTTTTTTTGGTG......................................................................................................................................................................................................................................... 20 1 7 0.29 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0
...............................................................................TGTTATTGTTTTTTTTTTGGTGGTTT..................................................................................................................................................................................................................................... 26 2 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................GGTGTTTAGCGGATTCTTAGT........................................................................................................................................................................................................................ 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................AAGTATATCTCGGGTATAAGT......................................................................................................................................................................... 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................GTTGTTTTTTTTTTGGTGGTTT..................................................................................................................................................................................................................................... 22 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................TGTTATTGTTTTTTTTTTGGTGGTTA..................................................................................................................................................................................................................................... 26 3 9 0.11 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................TTTTGCCGTCTCTAAGTA....................................................................................................................................................................................................................... 18 2 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TTAGGGTGACCCTTAAGGTT.................................................................................................. 20 3 14 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................TGGTTCTTTTTTTGGTGTTTT..................................................................................................................................................................................................................................... 21 2 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................TGTGGTGTTCTGTGGTTTCTA........................................................................................................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................TTGGCTGATTCTAAGTAAA..................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:15877846-15878179 - dvi_7185 CGCACAATCCTTGGATTCCGGTGCGAAGCCAACGCCGCCAGATAGTTCAAGTAAGCCAGGC-----C------------------------------------------------------------------------------------GTGCCTGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACCCGCA------CAAC-------AACAAAAAAAAA-ACCACAAAACGC-----------------CAAAGATTCATTTAATAT----------------------------------T---------TTTTCTTCAGTTGT------------------------------------------------------------------------------------------------------------------TATT---TCAA-----------------------------------A-TAAAG---------------------------CACATATT------------------CATTGA-GAAAAG---------CATAATACCAACTGCGCACTCATTCAAA----------A--------------------------------------------------------------------------------------------------------------------TATCTTTTA-GAAAATTCCAATTGGAATTCCAATTCAAATAATCGATCTAAAAACATT--------TGTA----------------------TTATG------TGTATTGTCCACAGTTATACTCATTGATGAGTATGAGGACTTCGAGGAGGAGGATCTGAACTGT
droMoj3 scaffold_6496:7908875-7909234 + CGCACAATCTTTGGATTCCAGTGCGAAGCCAACGCCGCCAGATAGTTCAAGTAAGCCAGGC-----C------------------------------------------------------------------------------------GTGCCTGAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGAGCCAC----AAA---TTTGCCATCAA--AACAAATAAAC----------------------AC-----------------CAAAGAATCATTTCT-A--------------------------------------------CT----------TTCCCACATTT-----------------------------------CTTC-------------------GTTT-----------------------------------TTTTTTTTTTAT----TC-A-----------------------------------A-TAAAG-----------------------------------------------------------------------------------------------CATCATAT----------CAT---TT------------------------------------GATAACTTCTAAACAG--AAACTTTTATTTTTAGAGACAAAAACTGAAACCAATTTCTTAATATCATCCAAAAAATT--TTCAAAATTTTCCAAAAGAAAA--------------------------T-ATTGTAAATCTATA----------------------ATATG------TATA-TATCTTTAGTTATACTCATTGATGAGTATGAGGACTTCGAGGAGGAGGATCTAAATTGT
droGri2 scaffold_15245:12683535-12683848 - CGCACAATCCTTGGATTCGAGTGCCAAGCCAACGCCGCCAGATAGTTCAAGTAAGCCAGGC-----C------------------------------------------------------------------------------------GTGCCTGAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGAACAAT----AAT---CCCGC---------------------------------ACCAC---AC-----------------CAAAGAATCATTT---------------------------------------T---------TTTTC------------------------------------------------------------------------------------------------------------------------TTTTATCTACCCAA-----------------------------------A-TAAAG---------------------------AACATCTCACCAAATTAAAAACTTTTCATTTT-TCAA---------------------------------------------------------------------------------------------------TACTCAACGC--AGA-------------------------------------------------------------------------TTGGAGTTCTACTCCGGA-----------------ATTGTCAATAAATGATATTTACTATTTTATATATGTTTATGTGTATATGTATTGCGTACAGTTATACTAATTGATGAGTATGAGGATTTCGAGGAGGAGGATCTGAACTGT
droWil2 scf2_1100000004382:56137-56190 + A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTTATACTCATTGATGAATATGAAGACTTCGAAGAGGAGGATTTGAACTGT
dp5 Unknown_group_824:3177-3230 - A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTATCCTTATCGACGAGTATGAGGACTTCGAAGAAGAAGATCTGAACTGT
droPer2 scaffold_2:7084311-7084364 - A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTATCCTTATCGACGAGTATGAGGACTTCGAAGAGGAAGATCTGAACTGC
droAna3 scaffold_13266:4505917-4506320 - dan_1776 TGCTGAATCCCTGGACAGCAGTGCAAAGCCAACGCCGCCAGATAGTTCAAGTAATTTAAAC-----TC------------------------------------------------------------------------------------C-------------AACTAATTCTAAT---------ACAGATTT-------------AGATAGAAGG-----------------------TTTTGTTTTAAATGGAATCTAGAGTAT---------------------------TAT----------GTTTTAATTTAGACA-TTTGAATAAT----AAATTATTGGCCACCAAAGAACAAATAAAAAC---------------------------------------AAATCAAATATTTTT-A-TCTTATGAGTTTATATTTAAATCAGATTAAATCATGGTCCTGAGA-----TCTT-----------TT------------------------------TTCTGTAAATTTTAATGATATTTTGTTGTCTATTTGATTAC-----------------------------------------CAAAATATTTAGTTTAAAGTTTAAACTATAAACCCTTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAATAT--AC---------------------------------------------------------------AATT--------------------------------------------------------------------------------------------CTCTCTCTCAGTTATACTAATCGATGAGTACGAGGATTTCGAGGAGGAGGACCTTAACTGT
droBip1 scf7180000395751:309229-309281 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTATACTAATCGATGAGTACGAGGATTTCGAGGAGGAGGACCTCAACTGT
droKik1 scf7180000302817:361452-361870 - AGCCGAGTCCCTAGACAGCAGTGCAAAGCCTACGCCGCCAGATAGTTCAAGTAATTTAATT-----TGATTATACTTTCAATCGAAAACTAACACCTCATCATTTACTTATTAACTTTATTTGATTTTCTTGATTTTAATAAAAAGCATGTGTACCTGTTTTTCCTGATTT---TTTAT---------TTAGATTTATTTTTTCTGTTAAGATTGAATGATTAAAAAACATTGAATAACTCTTTTGGCTTCATTGGGATTCTAGAACATAAATTTTTTAACACATTCATCAGACATTAT----------G---------------------------------------------------------------------------------------------------------------------------TGAGT-------------------------------------------------------------------------------------------------------GTC-ATTTGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCGAACATAAAAACTTGTGTTTCACTTAACAAATAGATT-AACAAAAACGTTAAAAT--------------------------------------------------------------AAT--------------------------------------------------------------------------------------------CTTTCATTTAGTTATACTAATCGATGAGTACGAGGACTTCGAGGAGGAGGATCTGAACTGT
droFic1 scf7180000454066:1695699-1695750 + --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTATACTAATCGATGAGTACGAGGACTTCGAGGAGGAGGATCTGAACTGC
droEle1 scf7180000491258:232031-232395 - AGCCGAGTCCCTGGACAGCAGTGCAAAGCCAACGCCGCCAGATAGTTCAAGTAATTAAATT-----------------------------------------------------------------------------------------------------------------------AATTTACTCTTGATTT-------------AGGCAAA----------------------------------------------C--------------------------------------------------CAAATTAGGCTATTAGAAAAATATTTAAATTT----AG------GAAAAAAGTAAAATTTTAATAAAATCTTTAAATGTTTTAATTTGTCT--------------------T-T-TTTTATGAGT------------------------TGG------CT-----TTTTTTGATTGCCCTTA------------------------------TTTTG----CTTTAGTTATAACTTGTAACCAATATGGTTGCTACACAGTTACTAAATATATAGTCTT---T-ACTTATTTACCAAA-----------------------------------T-TAAAG---------------------------TAAAT--------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------------T------------GTCTTTTTAAAAT--------------------------------------------------------------------------------------------CCCTCCTTCAGTTATACTAATCGATGAGTACGAGGACTTCGAGGAGGAGGATCTAAACTGT
droRho1 scf7180000774573:21438-21490 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTATACTAATCGATGAGTACGAGGACTTTGAGGAGGAGGATCTCAACTGT
droBia1 scf7180000301754:297293-297344 + --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTATACTAATCGATGAGTACGAGGACTTCGAGGAGGAGGATCTCAACTGT
droTak1 scf7180000415363:196113-196477 + AGCCGAATCCCTGGACAGCAGTGCAAAGCCAACGCCGCCAGATAGTTCAAGTAATTAAAAATAGATA------------------------------------------------------------------------------------GTTCCTGTCTTCTAAGATCT---TTATTTAAT-------------------------------------------------------------------------------T--------------------------------------------------TAATTTAGACCATTAGAAAAATTATCAAATTGCTTGCC------GAACAAAATAAAAAATGTACAAATTCGTAAAAGGATTTAATTTTGCTATTATT--------------------TTACAAAT------------------------TGG------TT-----TCATTTTGTCACACTTGCTTTAATGGCAAGATTTAAAATTAAGTTACTTTTG----AT------------------------------------------------------------------------------------------------------------------------TTAGATTTAA-------------ATTTAAATCGACA-----------------------------------------TTAG------------------------------------------------------------------------------------------------------------------------------T----------GTTTGAATAAACT--TTAAAAAT--------------------------------------------------------------------------------------------CTCCCATTTAGTTATACTAATCGATGAGTACGAGGACTTCGAGGAGGAGGATCTGAACTGT
droEug1 scf7180000409209:146425-146745 + AGCTGAATCCCTGGACAGCAGTGCAAAGCCAACGCCGCCAGATAGTTCAAGTAATTAAAAA-----CGATTTTACT----------------------------------------------------------------------------G-------------GATCT---TTATT----------------------------------------------------------------------------------TT--------------------------------------------------TAGTTTAGACAATTAGATAAATTAGCAAATTGCTTGCC------GAACAAAAGAAAACATGAATAAATACGTAAAAGCATTTCATTTTGTTATTATT--------------------TT----------------------------------------------------------------------------------------------------------------TATTTAAAACTAATAT-----------------------------------T-TTTTATTTTTCAAAAT------------------------AACCCTTAAATTA----ACTAAGA----------------------------------------------------------------------GATATG------------------------------------------------------------------------------------------------------------------------------T----------CTTTAAATAAACTTTTTTAAAAT--------------------------------------------------------------------------------------------CTCTCATTTAGTTATACTAATCGATGAGTACGAGGACTTCGAGGAGGAGGATCTTAACTGT
dm3 chr2R:6033899-6034262 - AGCTGATTCCCTGGACAGCAGTGCAAAGCCAACGCCGCCAGATAGTTCAAGTAACTAAAAA-----TT------------------------------------------------------------------------------------A-------------GATCTATTCTATT----------------------------------------------------------------------------------TATAGTAT---------------------------TATTTTCGTAAAAGT-----TTTAGA--------------------CTACTTGCC------TAGCGAATGGGAACATAAATAAA-ACGTTAAATCATT-ATAT---------------------------------------------------------------TGG------CT-----TTTTTTGTTT-----------------------------------------CTATA-------------------------------------------------------------TT--------TTTTTAAT------------------------TTCCTTTTTA-TA----ACTATGAATTAA-------------ATGTATATCGACAGATTAGAGAATTCTTATTTT-AAAAAA---------TATGATACGTGTTGTGAAAGCATTTAAA----------AGT---TA------------------------------------GATT-ATTCTAAACAC--AAAC---------------------------------------T-----------------------AT--------------------------------------------------------------------------------------------CTCCCATTTAGTTATATTAATCGATGAGTACGAGGACTTCGAGGAGGAGGATCTTAACTGT
droSim2 2r:6810002-6810366 - dsi_22774 AGCTGATTCCCTGGACAGCAGTGCAAAGCCAACGCCGCCAGATAGTTCAAGTAACTAAAAA-----TT------------------------------------------------------------------------------------A-------------GATCTATTCTATT----------------------------------------------------------------------------------TATAGTAT---------------------------TATTATCGTAAAAGT-----TTTAGA--------------------CTACTTGCC------TATCGAATGAGAATATAAATAAA-ACGTAAAATCATT-ATAT---------------------------------------------------------------TGG------CT-----TTCTTTGTTT-----------------------------------------TTAT--------------------------------------------------------------TT--------TTTTAAAT------------------------TTCCTTTCTA-TA----ACTATGAATTAA-------------ATGTATATCGACAGATTACAGAATTCTTCTTTTTTTTAAA---------TATGATATGTGTTGTGAAAGCATTTAAGC---------ATT---TA------------------------------------GATT-ATTCTAAACAC--AATC---------------------------------------T-----------------------AT--------------------------------------------------------------------------------------------CTTCCATTTAGTTATATTAATCGATGAGTACGAGGACTTCGAGGAGGAGGATCTTAACTGT
droSec2 scaffold_1:3649922-3650298 - AGCTGATTCCCTGGACAGCAGTGCAAAGCCTACGCCGCCAGATAGTTCAAGTAACTAAAAA-----TT------------------------------------------------------------------------------------A-------------GATCTATTTTATT----------------------------------------------------------------------------------TATAGTAT---------------------------TATTTTCGTAAAAGT-----TTTAGA--------------------CTACTTGCA------TATCGAATGAGAACATAAATAAA-ACGTAAAATCATT-ATAT---------------------------------------------------------------TGG------CT-----TTCTTTGTTT-----------------------------------------TTAT--------------------------------------------------------------TT--------TTTAAAAT------------------------TTCTTTTATA-TA----ACTATGAATTAAATATATAATATAAATATATATCGACAGATTACAGAATTCTTCTTTTTTTTAAA---------TATGATATGTGTTGTGAAAGCATTTAAA----------GGT---TA------------------------------------GATT-ATTCTAAACAC--AATC---------------------------------------T-----------------------AT--------------------------------------------------------------------------------------------CTTCCATTTAGTTATATTAATCGACGAGTACGAGGACTTCGAAGAGGAGGATCTTAACTGT
droYak3 2L:18666844-18667198 - AGCCGATTCCCTGGACAGCAGTGCAAAGCCAACGCCGCCAGATAGTTCAAGTAATTAGAAA-----CT------------------------------------------------------------------------------------A-------------TATCTATTTAATT----------------------------------------------------------------------------------T-----AT---------------------------TATTTTCGAAAA-------------------------------------------------------ATGAGAACCAAAATAAA-ATCTAAAAGCATT-AATT---------------------------------------------------------------TGG------CTA----TTCTTTATTT-----------------------------------------GTAT--------------------------------------------------------------TT--------TTTT-CCT------------------------TTCCTTTTTA-TAACGGACTATGAATTAA-------------ATGTATATCGGCAGATTGCAAAATTCC--TTTAATTTGAACTATTATATTATTATATGATTTGTAAAAGAATTTAAATATACCTAAA----TATAGCCGAA-------------------------------------ATTAAACAC--AAAA---------------------------------------T-----------------------GT--------------------------------------------------------------------------------------------CTCCCATTTAGTTATATTAATCGATGAGTACGAGGACTTCGAGGAGGAAGATCTCAACTGT
droEre2 scaffold_4929:8337021-8337301 + AGCCGATTCCCTGGATAGCAGTGCAAAGCCAACGCCGCCAGATAGTTCAAGTAATTAAAAG-----TT------------------------------------------------------------------------------------A-------------TAACTATTTCATT----------------------------------------------------------------------------------T-----AA---------------------------TATTTTCGAAAA-------------------------------------------------------ATGAGAACATAAATGAA-ACCTA----------------------------------------------------------------------------------------TTCTTTACTTGTAT-----------------------------------------CTAT--------------------------------------------------------------TT--------ATTTAAAC------------------------TTCCTTTTT-----------TTGAATCAC-------------ATTTATATCGACAGATTATAAAATCCT---------------------------------------------------------AAAAGTTTATAGCCGAA-------------------------------------ATTAAACAC--GAAA---------------------------------------T-----------------------AT--------------------------------------------------------------------------------------------CTCCCATTTAGTTATATTAATCGATGAGTACGAGGACTTCGAGGAGGAGGATCTTAACTGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CGCACAATCCTTGGATTCCGGTGCGAAGCCAACGCCGCCAGATAGTTCAAGTAAGCCAGGC-----C------------------------------------------------------------------------------------GTGCCTGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACCCGCA------CAAC-------AACAAAAAAAAA-ACCACAAAACGC-----------------CAAAGATTCATTTAATAT----------------------------------T---------TTTTCTTCAGTTGT------------------------------------------------------------------------------------------------------------------TATT---TCAA-----------------------------------A-TAAAG---------------------------CACATATT------------------CATTGA-GAAAAG---------CATAATACCAACTGCGCACTCATTCAAA----------A--------------------------------------------------------------------------------------------------------------------TATCTTTTA-GAAAATTCCAATTGGAATTCCAATTCAAATAATCGATCTAAAAACATT--------TGTA----------------------TTATG------TGTATTGTCCACAGTTATACTCATTGATGAGTATGAGGACTTCGAGGAGGAGGATCTGAACTGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................GAAGCCAACGCCGCCAGATAGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000100000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACTTCGAGGAGGAGGATT........2211.001000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGACTTCGAGGAGGAGGATCT.......2411.001000000000000000000000000000000000000000000000000000000000000010
..............................AACGCCGCCAGATAGTTCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
..................................................GTAAGCCAGGC-----C------------------------------------------------------------------------------------GTGCCTGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGGACTTCGAGGAGGAGGATCT.......2511.001000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGATGAGTATGAGGACTTCGA...................2411.001000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACTTCGAGGAGGAGGATCT.......2311.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGATGAGTATGAGGACTTCGAGGA................2711.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATGAGTATGAGGACTT......................2011.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTTCGAGGAGGAGGATCT.......2111.001000000000000001000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATGAGTATGAGGACTTCGA...................2311.001000000000000000000000000000000000000000000000000000000000000010
droMoj3
CGCACAATCTTTGGATTCCAGTGCGAAGCCAACGCCGCCAGATAGTTCAAGTAAGCCAGGC-----C------------------------------------------------------------------------------------GTGCCTGAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGAGCCAC----AAA---TTTGCCATCAA--AACAAATAAAC----------------------AC-----------------CAAAGAATCATTTCT-A--------------------------------------------CT----------TTCCCACATTT-----------------------------------CTTC-------------------GTTT-----------------------------------TTTTTTTTTTAT----TC-A-----------------------------------A-TAAAG-----------------------------------------------------------------------------------------------CATCATAT----------CAT---TT------------------------------------GATAACTTCTAAACAG--AAACTTTTATTTTTAGAGACAAAAACTGAAACCAATTTCTTAATATCATCCAAAAAATT--TTCAAAATTTTCCAAAAGAAAA--------------------------T-ATTGTAAATCTATA----------------------ATATG------TATA-TATCTTTAGTTATACTCATTGATGAGTATGAGGACTTCGAGGAGGAGGATCTAAATTGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGATGAGTATGAGGACTTCGAGGA................2711.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGGACTTCGAGGAGGAGGAT.........2311.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAT----TC-A-----------------------------------A-TAAAG-----------------------------------------------------------------------------------------------CATCA.........................................................................................................................................................................................................................................................................................................2011.001100000
droGri2
CGCACAATCCTTGGATTCGAGTGCCAAGCCAACGCCGCCAGATAGTTCAAGTAAGCCAGGC-----C------------------------------------------------------------------------------------GTGCCTGAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGAACAAT----AAT---CCCGC---------------------------------ACCAC---AC-----------------CAAAGAATCATTT---------------------------------------T---------TTTTC------------------------------------------------------------------------------------------------------------------------TTTTATCTACCCAA-----------------------------------A-TAAAG---------------------------AACATCTCACCAAATTAAAAACTTTTCATTTT-TCAA---------------------------------------------------------------------------------------------------TACTCAACGC--AGA-------------------------------------------------------------------------TTGGAGTTCTACTCCGGA-----------------ATTGTCAATAAATGATATTTACTATTTTATATATGTTTATGTGTATATGTATTGCGTACAGTTATACTAATTGATGAGTATGAGGATTTCGAGGAGGAGGATCTGAACTGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTTATACTCATTGATGAATATGAAGACTTCGAAGAGGAGGATTTGAACTGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGACTTCGAAGAGGA.............1911.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACTTCGAAGAGGAGGAT.........1911.00100100
dp5
A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTATCCTTATCGACGAGTATGAGGACTTCGAAGAAGAAGATCTGAACTGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGAAGAAGATCTGAACTG.2130.3310000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGGACTTCGAAGAAGAA............2030.3311000000000
droPer2
A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTATCCTTATCGACGAGTATGAGGACTTCGAAGAGGAAGATCTGAACTGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACTTCGAAGAGGAAGAT.........2111.001000001
droAna3
TGCTGAATCCCTGGACAGCAGTGCAAAGCCAACGCCGCCAGATAGTTCAAGTAATTTAAAC-----TC------------------------------------------------------------------------------------C-------------AACTAATTCTAAT---------ACAGATTT-------------AGATAGAAGG-----------------------TTTTGTTTTAAATGGAATCTAGAGTAT---------------------------TAT----------GTTTTAATTTAGACA-TTTGAATAAT----AAATTATTGGCCACCAAAGAACAAATAAAAAC---------------------------------------AAATCAAATATTTTT-A-TCTTATGAGTTTATATTTAAATCAGATTAAATCATGGTCCTGAGA-----TCTT-----------TT------------------------------TTCTGTAAATTTTAATGATATTTTGTTGTCTATTTGATTAC-----------------------------------------CAAAATATTTAGTTTAAAGTTTAAACTATAAACCCTTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAATAT--AC---------------------------------------------------------------AATT--------------------------------------------------------------------------------------------CTCTCTCTCAGTTATACTAATCGATGAGTACGAGGATTTCGAGGAGGAGGACCTTAACTGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....GAATCCCTGGACAGCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
..................................................................................................................................................................................................................................................................................................................................................................AAAGAACAAATAAAAAC---------------------------------------AC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.251010000
droBip1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTATACTAATCGATGAGTACGAGGATTTCGAGGAGGAGGACCTCAACTGTSizeHit CountTotal NormTotal
No Reads
droKik1
AGCCGAGTCCCTAGACAGCAGTGCAAAGCCTACGCCGCCAGATAGTTCAAGTAATTTAATT-----TGATTATACTTTCAATCGAAAACTAACACCTCATCATTTACTTATTAACTTTATTTGATTTTCTTGATTTTAATAAAAAGCATGTGTACCTGTTTTTCCTGATTT---TTTAT---------TTAGATTTATTTTTTCTGTTAAGATTGAATGATTAAAAAACATTGAATAACTCTTTTGGCTTCATTGGGATTCTAGAACATAAATTTTTTAACACATTCATCAGACATTAT----------G---------------------------------------------------------------------------------------------------------------------------TGAGT-------------------------------------------------------------------------------------------------------GTC-ATTTGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCGAACATAAAAACTTGTGTTTCACTTAACAAATAGATT-AACAAAAACGTTAAAAT--------------------------------------------------------------AAT--------------------------------------------------------------------------------------------CTTTCATTTAGTTATACTAATCGATGAGTACGAGGACTTCGAGGAGGAGGATCTGAACTGTSizeHit CountTotal NormTotal
No Reads
droFic1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTATACTAATCGATGAGTACGAGGACTTCGAGGAGGAGGATCTGAACTGCSizeHit CountTotal NormTotal
No Reads
droEle1
AGCCGAGTCCCTGGACAGCAGTGCAAAGCCAACGCCGCCAGATAGTTCAAGTAATTAAATT-----------------------------------------------------------------------------------------------------------------------AATTTACTCTTGATTT-------------AGGCAAA----------------------------------------------C--------------------------------------------------CAAATTAGGCTATTAGAAAAATATTTAAATTT----AG------GAAAAAAGTAAAATTTTAATAAAATCTTTAAATGTTTTAATTTGTCT--------------------T-T-TTTTATGAGT------------------------TGG------CT-----TTTTTTGATTGCCCTTA------------------------------TTTTG----CTTTAGTTATAACTTGTAACCAATATGGTTGCTACACAGTTACTAAATATATAGTCTT---T-ACTTATTTACCAAA-----------------------------------T-TAAAG---------------------------TAAAT--------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------------T------------GTCTTTTTAAAAT--------------------------------------------------------------------------------------------CCCTCCTTCAGTTATACTAATCGATGAGTACGAGGACTTCGAGGAGGAGGATCTAAACTGTSizeHit CountTotal NormTotal
No Reads
droRho1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTATACTAATCGATGAGTACGAGGACTTTGAGGAGGAGGATCTCAACTGTSizeHit CountTotal NormTotal
No Reads
droBia1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTATACTAATCGATGAGTACGAGGACTTCGAGGAGGAGGATCTCAACTGTSizeHit CountTotal NormTotal
No Reads
droTak1
AGCCGAATCCCTGGACAGCAGTGCAAAGCCAACGCCGCCAGATAGTTCAAGTAATTAAAAATAGATA------------------------------------------------------------------------------------GTTCCTGTCTTCTAAGATCT---TTATTTAAT-------------------------------------------------------------------------------T--------------------------------------------------TAATTTAGACCATTAGAAAAATTATCAAATTGCTTGCC------GAACAAAATAAAAAATGTACAAATTCGTAAAAGGATTTAATTTTGCTATTATT--------------------TTACAAAT------------------------TGG------TT-----TCATTTTGTCACACTTGCTTTAATGGCAAGATTTAAAATTAAGTTACTTTTG----AT------------------------------------------------------------------------------------------------------------------------TTAGATTTAA-------------ATTTAAATCGACA-----------------------------------------TTAG------------------------------------------------------------------------------------------------------------------------------T----------GTTTGAATAAACT--TTAAAAAT--------------------------------------------------------------------------------------------CTCCCATTTAGTTATACTAATCGATGAGTACGAGGACTTCGAGGAGGAGGATCTGAACTGTSizeHit CountTotal NormTotal
No Reads
droEug1
AGCTGAATCCCTGGACAGCAGTGCAAAGCCAACGCCGCCAGATAGTTCAAGTAATTAAAAA-----CGATTTTACT----------------------------------------------------------------------------G-------------GATCT---TTATT----------------------------------------------------------------------------------TT--------------------------------------------------TAGTTTAGACAATTAGATAAATTAGCAAATTGCTTGCC------GAACAAAAGAAAACATGAATAAATACGTAAAAGCATTTCATTTTGTTATTATT--------------------TT----------------------------------------------------------------------------------------------------------------TATTTAAAACTAATAT-----------------------------------T-TTTTATTTTTCAAAAT------------------------AACCCTTAAATTA----ACTAAGA----------------------------------------------------------------------GATATG------------------------------------------------------------------------------------------------------------------------------T----------CTTTAAATAAACTTTTTTAAAAT--------------------------------------------------------------------------------------------CTCTCATTTAGTTATACTAATCGATGAGTACGAGGACTTCGAGGAGGAGGATCTTAACTGTSizeHit CountTotal NormTotal
No Reads
dm3
AGCTGATTCCCTGGACAGCAGTGCAAAGCCAACGCCGCCAGATAGTTCAAGTAACTAAAAA-----TT------------------------------------------------------------------------------------A-------------GATCTATTCTATT----------------------------------------------------------------------------------TATAGTAT---------------------------TATTTTCGTAAAAGT-----TTTAGA--------------------CTACTTGCC------TAGCGAATGGGAACATAAATAAA-ACGTTAAATCATT-ATAT---------------------------------------------------------------TGG------CT-----TTTTTTGTTT-----------------------------------------CTATA-------------------------------------------------------------TT--------TTTTTAAT------------------------TTCCTTTTTA-TA----ACTATGAATTAA-------------ATGTATATCGACAGATTAGAGAATTCTTATTTT-AAAAAA---------TATGATACGTGTTGTGAAAGCATTTAAA----------AGT---TA------------------------------------GATT-ATTCTAAACAC--AAAC---------------------------------------T-----------------------AT--------------------------------------------------------------------------------------------CTCCCATTTAGTTATATTAATCGATGAGTACGAGGACTTCGAGGAGGAGGATCTTAACTGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACTTCGAGGAGGAGGATC........2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000020000
..............................................................................................................................................................................................................................................................................................................................................................................GGAACATAAATAAA-ACGTTAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAGGACTTCGAGGAGG..............1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAGGACTTCGAGGAGGAGG...........2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000001000000000000000
..........CTGGACAGCAGTGCAAAGCCAACGCCGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAATCGATGAGTACGAGG..........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAGGACTTCGAGGAGGAGGATCT.......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGGACTTCGAGGAGGA.............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGGACTTCGAGGAGGAGG...........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGACTTCGAGGAGGAGGAT.........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATATTAATCGATGAGTACGAGGAC........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAGGACTTCGAGGAGGAG............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................TATTTTCGTAAAAGT-----TTTAGA--------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
..........CTGGACAGCAGTGCAAAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAGGACTTCGAGGAGGA.............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACTTCGAGGAGGAGGATCT.......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTACGAGGACTTCGAGGAGGAGG...........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCGATGAGTACGAGGACTTCGA...................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................TACTTGCC------TAGCGAATGGGAACATAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................AGTGCAAAGCCAACGCCGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................AGCGAATGGGAACATAAATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAATCGATGAGTAC..............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTACGAGGACTTCGAGGAGG..............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TGATTCCCTGGACAGCAGTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGAGGAGGAGGATCTTA.....2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
......TTCCCTGGACAGCAGTGCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...................AGTGCAAAGCCAACGCCGCCAGATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................ACGTTAAATCATT-ATAT---------------------------------------------------------------TGG------CT-----TTTTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAAT------------------------TTCCTTTTTA-TA----ACT.........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................GT-----TTTAGA--------------------CTACTTGCC------TAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....GATTCCCTGGACAGCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
........CCCTGGACAGCAGTGCAAAGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACTTCGAGGAGGAGGAT.........2111.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GACAGCAGTGCAAAGCCAACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................GCAAAGCCAACGCCGCCAGATAGTTCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TCCCTGGACAGCAGTGCAAAGCCAACGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATCGACAGATTAGAGAAT...........................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATTAATCGATGAGTACGAGGAC........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................TAAAAGT-----TTTAGA--------------------CTACGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.7530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGACTTCGAGGAGGAGGA..........2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
droSim2
AGCTGATTCCCTGGACAGCAGTGCAAAGCCAACGCCGCCAGATAGTTCAAGTAACTAAAAA-----TT------------------------------------------------------------------------------------A-------------GATCTATTCTATT----------------------------------------------------------------------------------TATAGTAT---------------------------TATTATCGTAAAAGT-----TTTAGA--------------------CTACTTGCC------TATCGAATGAGAATATAAATAAA-ACGTAAAATCATT-ATAT---------------------------------------------------------------TGG------CT-----TTCTTTGTTT-----------------------------------------TTAT--------------------------------------------------------------TT--------TTTTAAAT------------------------TTCCTTTCTA-TA----ACTATGAATTAA-------------ATGTATATCGACAGATTACAGAATTCTTCTTTTTTTTAAA---------TATGATATGTGTTGTGAAAGCATTTAAGC---------ATT---TA------------------------------------GATT-ATTCTAAACAC--AATC---------------------------------------T-----------------------AT--------------------------------------------------------------------------------------------CTTCCATTTAGTTATATTAATCGATGAGTACGAGGACTTCGAGGAGGAGGATCTTAACTGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGATGAGTACGAGGA.........................1811.00100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGATGAGTACGAGGACTTCGA...................2411.00100010000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTAATCGATGAGTACGAGGA.........................2411.00100010000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGGACTTCGAGGAGGA.............2111.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAGGAGGAGGATCTTAACTGT2411.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAGCATTTAAGC---------............................................................................................................................................................................................................................................................................................1511.00100000000010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCGATGAGTACGAG...........................1811.00100001000000000000
droSec2
AGCTGATTCCCTGGACAGCAGTGCAAAGCCTACGCCGCCAGATAGTTCAAGTAACTAAAAA-----TT------------------------------------------------------------------------------------A-------------GATCTATTTTATT----------------------------------------------------------------------------------TATAGTAT---------------------------TATTTTCGTAAAAGT-----TTTAGA--------------------CTACTTGCA------TATCGAATGAGAACATAAATAAA-ACGTAAAATCATT-ATAT---------------------------------------------------------------TGG------CT-----TTCTTTGTTT-----------------------------------------TTAT--------------------------------------------------------------TT--------TTTAAAAT------------------------TTCTTTTATA-TA----ACTATGAATTAAATATATAATATAAATATATATCGACAGATTACAGAATTCTTCTTTTTTTTAAA---------TATGATATGTGTTGTGAAAGCATTTAAA----------GGT---TA------------------------------------GATT-ATTCTAAACAC--AATC---------------------------------------T-----------------------AT--------------------------------------------------------------------------------------------CTTCCATTTAGTTATATTAATCGACGAGTACGAGGACTTCGAAGAGGAGGATCTTAACTGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAAGAGGAGGATCTTAACT..2211.0010100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAGGACTTCGAAGAGGAG............2111.0010100
...........TGGACAGCAGTGCAAAGCCTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTAAA---------TATGATATGTGT......................................................................................................................................................................................................................................................................................................................2111.0011000
....GATTCCCTGGACAGCAGTGCAAAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
..........CTGGACAGCAGTGCAAAGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
droYak3
AGCCGATTCCCTGGACAGCAGTGCAAAGCCAACGCCGCCAGATAGTTCAAGTAATTAGAAA-----CT------------------------------------------------------------------------------------A-------------TATCTATTTAATT----------------------------------------------------------------------------------T-----AT---------------------------TATTTTCGAAAA-------------------------------------------------------ATGAGAACCAAAATAAA-ATCTAAAAGCATT-AATT---------------------------------------------------------------TGG------CTA----TTCTTTATTT-----------------------------------------GTAT--------------------------------------------------------------TT--------TTTT-CCT------------------------TTCCTTTTTA-TAACGGACTATGAATTAA-------------ATGTATATCGGCAGATTGCAAAATTCC--TTTAATTTGAACTATTATATTATTATATGATTTGTAAAAGAATTTAAATATACCTAAA----TATAGCCGAA-------------------------------------ATTAAACAC--AAAA---------------------------------------T-----------------------GT--------------------------------------------------------------------------------------------CTCCCATTTAGTTATATTAATCGATGAGTACGAGGACTTCGAGGAGGAAGATCTCAACTGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-------------ATGTATATCGGCAGATTGC................................................................................................................................................................................................................................................................................................................................................................2212.00220000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGGACTTCGAGGAGGAAGAT.........2511.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGGACTTCGAGGAGGA.............2111.00100000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGTACGAGGACTTCGAGGAGGAAG...........2811.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAGGACTTCGAGGAGGAAGA..........2311.00100000000001
droEre2
AGCCGATTCCCTGGATAGCAGTGCAAAGCCAACGCCGCCAGATAGTTCAAGTAATTAAAAG-----TT------------------------------------------------------------------------------------A-------------TAACTATTTCATT----------------------------------------------------------------------------------T-----AA---------------------------TATTTTCGAAAA-------------------------------------------------------ATGAGAACATAAATGAA-ACCTA----------------------------------------------------------------------------------------TTCTTTACTTGTAT-----------------------------------------CTAT--------------------------------------------------------------TT--------ATTTAAAC------------------------TTCCTTTTT-----------TTGAATCAC-------------ATTTATATCGACAGATTATAAAATCCT---------------------------------------------------------AAAAGTTTATAGCCGAA-------------------------------------ATTAAACAC--GAAA---------------------------------------T-----------------------AT--------------------------------------------------------------------------------------------CTCCCATTTAGTTATATTAATCGATGAGTACGAGGACTTCGAGGAGGAGGATCTTAACTGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............GATAGCAGTGCAAAGCCAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCT---------------------------------------------------------AAAAGTTTATAGCC.................................................................................................................................................................................................................................................................................1911.0010000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGAGTACGAGGACTTCGAGGAG...............2511.0010000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGATGAGTACGAGGACTTC.....................2111.0010000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTACGAGGACTTCGAGGAGGA.............2311.0010000100
..........CTGGATAGCAGTGCAAAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTACGAGGACTTCGAGGAGGAG............2411.0010000100
.GCCGATTCCCTGGATAGCAGTGCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000010

Generated: 05/16/2015 at 08:47 PM