ID:

dvi_7087

 Coordinate:

scaffold_12875:15428641-15428791 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.0 -16.9 -16.9

Flybase annnotation

exon [dvir_GLEANR_7475:2]; CDS [Dvir\GJ22166-cds]; intron [Dvir\GJ22166-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTTTTGCGCTTGTTCTGCCACACGTTCACACAGACATGGCGGACTGTCTGTCAGACCCGCAGCATGCTGAAAACACGGCCAGTGTGACCAAATTGTCTAACCCAAAATATGCCACTTTCCGTTAAAGACAAAAATTGCTTGTAGAAAATACCAAAAGAAATTAGATATTGAAATATTCATTTTTTTCTTATTTCCACACAGATCACAGAATTGAATCTGGACAATTGCAGGAGTACAAGCATTGTTGGCCT
**************************************************...............((((......))))..(((((......(((((((((...................)))..)))))).........(((.....))).....(((((.(((....(((((....)))))..))).))))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M028
head
 SRR060686
Argx9_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 M027
male body		 SRR060667
160_females_carcasses_total
 SRR060678
9x140_testes_total
 SRR060679
140x9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR1106717
embryo_6-8h
 SRR1106724
embryo_12-14h
 SRR1106725
embryo_14-16h
 V053
head
 SRR1106729
mixed whole adult body
.........TTGTTCTGCCACACGTTCACA............................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................AGGAGTACAAGCATTGTTGGC.. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TCTGGACAATTGCAGGAGTACA.............. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................ACAGACATGGCGGACTGTTT.......................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CAATTGCAGGAGTACAAGC........... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................CAATTGCAGGAGTACAAGCAT......... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................CCAGTGTGACCAAATTGTCTAACCCAAA................................................................................................................................................. 28 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................ACATGGCGGACTGTCTGTCGG..................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGGACAATTGCAGGAGTAC............... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
........CTTGTTCTGCCACACGTTCAC.............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GCAGGAGTACAAGCATTGTTG.... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................AAGCATTGTTGGCCT 15 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................AATTGCAGGAGTACAAGCATT........ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TTGCAGGAGTACAAGCATTGT...... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................CGGACGTGGCGGACTGTCTGT........................................................................................................................................................................................................ 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................ATGGCGGACTGTCTGTCAGACCCG................................................................................................................................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................CACACAGACATGGCGGACTG............................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
................................GACATGGCGGACTGTCTGTCAGACCCGCAAC............................................................................................................................................................................................ 31 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................CAGACATGGCGGACTGTCTGTC....................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................TCACACAGACATGGCGGACTG............................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AACCAGATCACAGAATTGAAT................................... 21 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................AACTGAATCTGGACAATC......................... 18 2 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ACAGGTCTCGGAATTGAATC.................................. 20 3 11 0.09 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................ATCACAGAATTGAAC................................... 15 1 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GAAAACGCGAACAAGACGGTGTGCAAGTGTGTCTGTACCGCCTGACAGACAGTCTGGGCGTCGTACGACTTTTGTGCCGGTCACACTGGTTTAACAGATTGGGTTTTATACGGTGAAAGGCAATTTCTGTTTTTAACGAACATCTTTTATGGTTTTCTTTAATCTATAACTTTATAAGTAAAAAAAGAATAAAGGTGTGTCTAGTGTCTTAACTTAGACCTGTTAACGTCCTCATGTTCGTAACAACCGGA
**************************************************...............((((......))))..(((((......(((((((((...................)))..)))))).........(((.....))).....(((((.(((....(((((....)))))..))).))))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060678
9x140_testes_total
 SRR060659
Argentina_testes_total
 V053
head
 V047
embryo
 SRR060681
Argx9_testes_total
 M028
head
 SRR060654
160x9_ovaries_total
 SRR060656
9x160_ovaries_total
 SRR060673
9_ovaries_total
 SRR060683
160_testes_total
 SRR060688
160_ovaries_total
 SRR1106721
embryo_10-12h
 SRR1106722
embryo_10-12h
 V116
male body		 SRR060669
160x9_females_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
.................GGTGTGCAAGTGTGTCTGT....................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....ACGCGAACAAGACGGTGTGCAAGTGTGTCTGTACC.................................................................................................................................................................................................................... 35 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........AACAAGACGGTGTGCAAGTGTGTC.......................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................GTGCAAGTGTGTCTGTAC..................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................GCGTCGTACGACTTTTGTG............................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................GTGTGTCTATTGTCTTAACTT.................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....CTGCGAACAAGACGGTGTGCAA................................................................................................................................................................................................................................. 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....CGCGAACAAGACGGTGTGCAAGT............................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................CGGTGTGCAAGTGTGTCTGT....................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............GACGGTGTGCAAGTGTGTCTGTA...................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................CAGTGTGCAAGTGTGTCTGT....................................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........GAACAAGACGGTGTGCAAGTG.............................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........ACAAGACGGTGTGCAAGTGTG............................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................GGTGTGCAAGTGTGTCTGTACCGCC................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................AAAGGTGTGTCTAGTGTC........................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................AGGTGTGTCTAGTGTCTTAAC...................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GTGTCTAGTGTCTTAACTTA................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................CTGACAGACAGTCTGGGC................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................GGTGTGCAAGTGTGTCTGTA...................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................GTGCAAGTGTGTCTGTACCGC.................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....ACGCGAACAAGACGGTGTGC................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................GTGTGCAAGTGTGTCTGTA...................................................................................................................................................................................................................... 19 0 2 1.00 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................AGGCAATTTCTAGTTTTAACG................................................................................................................. 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TATGGTTTTCTCTGAGCTATA................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................ATGGTTTTCTCTGAGCTATA................................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................TATGGTTTTCTCTGAGCTA..................................................................................... 19 3 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1
....................................................................................................GGGTTTTATACGGTGAAA..................................................................................................................................... 18 0 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................ACTGGGTTTTATTGGGTGAA...................................................................................................................................... 20 3 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................CAGATTGGGTCTCATTCGG.......................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:15428591-15428841 + dvi_7087 CT-TTTGCGCTTG--TTCTGCCACACGTTCACACAGA---CATGGC-GGACTGTCTGTCAGACCCGC-AGCATGCTGAAAACAC----G--GCCAGTGTGACCAAATT-GTCTAAC----------------------------------------CC----AA----------AATATGCC----ACTTTCCGTTA-----AAGAC-A--------------------------------------A---------------------------------------------------------------------------------------------AA--------ATTGCTTGTAGAAAATACCAAA----------------A----------GAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGATA----------TTGAA-------------ATATTCA-------T-----------TTTTTTCTTAT-----TTC-----CACACAGATCACAGAATTGAATCTGGACAATTGCAGGAGTACAAGCATTGTTGGCCT
droMoj3 scaffold_6496:8368517-8368800 - CT-TTTGCGCTCG--TTCTGGCACACGTTCACACAGA---CATGGC-AGACTGTCAG--AGACTCGC-AATACGCTGAATACAC----CG--GCAGTGTGACCAAATC-GTCTAAT----------------------------------------GT----TA----------AATATGCC----CATTTCC-TTA--TGCAGCAC-A--------------------------------------GGAATCGCTGACAG---------------------------------------------------------------T-ACG----------------------------------AAATACCAAAATGAAGTTATATGAGAT----------GA--------------ATATTTATG-AAATGAA---TT--------------------------TG---------------------------------------------------------------------------AATAATA----------------------------------------AATT----A--T-----------------------------TTT-------------------CCC----------TTTTCTATAAACGCACAGATATTAGAACTGAATCTGGATAACTGCAGGAGTACAAGCATTGTTGGCCT
droGri2 scaffold_15245:12229729-12229980 + CT-TTTACGCTTGTTTTCTGCCACACGTTCACACAGA---CATGGC-GGACTGTC----AGACTTGC-ATCTTGCTGAATATAC----ACATCCAGTGTGACCAAATCCATCTAAC----------------------------------------TT----TA----------AAAATGCC----CATTTCCGTTT---------T-A--------------------------------------A---------------------------------------------------------------------------------------------AA--------TTAGATTGTTGCAAATACTAAA----------------A----------GATTTT---GG----GATATTTATTGAAATGA-----T--------------------------TG---------------------------------------------------------------------------AAAA---------------------------------------------TTAAATA--T--------------------------------------------------------------------TT-----TGAACAGATCACAGAACTGAATCTGGACAATTGCCGGAGTACAAGCATCGTTGGCCT
droWil2 scf2_1100000004558:2219427-2219524 - A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACC---------------------------------------------------------------AAA------------------------------------------------------------------------------------------------------------------------------------TAAAAAT---------------TTAATCA--T---------GAT-----------------TT--------T-----------TCTTGTCCATT--------------TTTCAGATCACAGAACTGAATCTAGATAATTGTCGGAGTGCAAGCATTGTTGGCCT
dp5 3:16571199-16571253 - -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAGATCCAAGAGCTGAACCTGGATAACTGCCGTAGTACAAGCATTGTTGGCCT
droPer2 scaffold_4:190688-190742 + -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAGATCCAAGAGCTGAACCTGGATAACTGCCGTAGTACAAGCATTGTTGGCCT
droAna3 scaffold_13266:10429967-10430213 + CT-TCT--GCTTTTTCT-CTTCACACGTTCACACAGACAGTGTTGCCAGTT------------TCT-----------------------------------CCAAA-T-GTCTACCATTTTCCTGAAAATCCCAAAGCGGCAAGGTCACTCTTAGTTTTAATTAAAGCTATCGAAAGA-----------------------------------------------------------------------TATCGATACTT---------------------------------------------------------------TTCGTTATATTT----------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------AAAAATA-----------------AAATAATAATTTTTAATCAATAAAAAT----G-------------------------------------------------------------------TTTTCA-----TTTTTAGATCACAGAGTTGAATCTGGATAATTGCCGGAGTACAAGCATCGTGGGCCT
droBip1 scf7180000396428:849224-849466 + CT-TCT--GCTTTTTCT-CTTCACACGTTCACACAGACAGTGTTGCCAGGTGGCC----GTTTTCA-----------------------------------CCAA--T-GTCTATCAATTGCCTGAAAATACCAAAACGGGATGGTCACTCT---------------------------------------------------------------TAGTT------------------TTAATGAAAGATATCGATACTT---------------------------------------------------------------ATCGTTATATTT-AAAAAAATATAA----------------------------------TA---------------------------------TATTTATTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------AAAT----A----------TTTAA-------------ATAT--------------------------------------TTA-----CTTTCAGATCACAGAGTTGAATCTGGATAATTGCCGGAGTACAAGCATCGTGGGCCT
droKik1 scf7180000302385:534642-534963 - TT-TTTGCGTTTGCTTT-----------------CAG---TGTTGCCAG-CTGAA----AA-TTTGG-CTTTCCCCC------------TAA----------------------------------------------------------------------AAAATC--TTGA-A--------------------------------------------------------------------AACATTATCGATATACTTATTCTTGGCGACTCAACCATCGATAAAAAGC---TGTTCTGTAATCGATAATCGAAGACTT-T-ATTTTA--T-AAACAAA--------TTGGATTTAAGTACATACTCAA----------------ACCAGAATAGGGAACTT---GGATAGGA-TTCAATTAAAACAA-----T--------------------------T----------------------------------------AAAATTTAAATTT-------------------------------------------------------------------------------------------AAA-------------GCTTGTATTCTAATTTATTA-----------TTGAATTCT--ATT-----TACACAGATCACAGAGCTGAATCTGGACAACTGCCGGAGTACAAGCATCGTTGGCCT
droFic1 scf7180000453948:1690478-1690759 + TTTTCT--GCTCGCTTTGCGTCAATTTCTTACACCAG---TGTGACCAAATCATA----GCCTACAA-ATTTTCCAT--TGG--TCTTTGGC----------------------------------------------------------------------ACAATATACCTAAAAACACCA---C----------TTG----AT-CG------AACTC-------C---------GTCGATATGGCCTATCGATAACTT---------------------------------------------------------------T-ATTAAATTC-AAAAAAATTAAA----------------------------------TACTAGTT----------GATTTTTAA------------------------AAA-----------------------------------------------------------------------------------------------------------------------------------------------------TAAA-TTAAATGAT--------TTTAA-------------GTCTTTATTCT----TATTA------TGTCAC-------TTTTTT-----ATCCCAGATCACAGAACTGAATCTGGACAATTGCCGAAGTACAAGCATTGTTGGCCT
droEle1 scf7180000491214:478561-478615 + -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAGATCACAGAGCTGAATCTGGACAATTGCCGGAGTACAAGCATAGTTGGCCT
droRho1 scf7180000777956:18577-18916 + TT-TCT--GCTCGCTTTGGGTCAAAATTGTACACCAG---TGTGCCCAAACTGAA----GATTTCAA-ATTTGCCAT--TGG--TCTTTGAC----------------------------------------------------------------------AAAATATAGTTAAAAATACCA---CATACCC-TTA--AATTGTA-TCGAAAA-TT-CAA----------------ACCGATAGATCTTATCGATAAATGTAT--------------------------------------------------------------TATTGAATTAGAAATTATTAAA----------------------------------AACA-------------------------------------------------------------------------------------------------------------------GTT-AAAATACAAAA----------------------------AAAAAATAATATTTAATATAA--------------------CGAGATAAAATA--ATTCTAGCTTTAAGTAAACAACTAAATTATTTATTCT----CACAA------TTTTATTTAAT-----TTA-----CCCTCAGATCACAGAGTTGAATCTGGACAATTGCCGGAGTACAAGCATCGTTGGCCT
droBia1 scf7180000301754:2809671-2809970 + TT-T-------------------------TACACCAA---TGTGACCAAACTCTA----GCGTTTCA-AGAATCTAAAATGCTC----CGAT----------------------------------------------------------------------AAAATA--TCGAGA--------------------------T------------TTGATT------T---------GACGATAGACGCTATCGATATGTTTATT--------------------TAGAAAGCAATTGTTT--------------------------TG---------------------------------AA-ATATTTTAATT---------------------------------------------------------------------------------------------AAGTATTTTAAAGTTTGTCCTTTTTAAAAAGCGTTCCTAAGTACACTTTGGTTGGTTAATAAAATATATCCCAAAAATA----------------------------------------AATGAA-----------------------------------TTATTCT----AACAA------CTTCAC------TTCCTTT-----ACCCTAGATCACAGAGCTGAATCTGGACAATTGCCGGAGTACGAGCATCGTTGGCCT
droTak1 scf7180000415795:86377-86668 - TTTTCT--GCTCGCTTT-CGTCAAAATTTTACACCAA---TGTGACCAAACTGGG----GCGCTCAA-ATAATCCTAAATGCTC----CGAT----------------------------------------------------------------------AAAATATACTGAAA--TATCG---------------------CT-TG-----GCTGCTTGAAATACATTTTGATGGACGATAAATAGTATCGATAAACT--------------------------------------------------------------------------AA-ACATTTTCAAAAGTTATATTTTTGAAAAGATCAA-----------------------------ATTTT---GT----A-------------------------ATTTTCC-TA--AATATTATATATA---------------------------------------------------------------------------AATAACA----------------------------------------AATT----A--T------------------------------------------------------TAT-------TTTTTA-----ATCCTAGATCACAGAGCTGAATCTGGACAATTGCCGGAGTACAAGCATCGTTGGCCT
droEug1 scf7180000409672:1345908-1346235 + TT-TCT--GCTCGCTTTGCGTCAAAATTTTTTACCAA---TGTGACCAAACTGGA----GGGTTTAAAAAAATCCAAAATGGTT----TA------------------------------------------------------------------------CAAAAATACTAATAAA---CTT---------------ATTTGTT-TA--------GCTA----------------GACGAGAAATACTATCGATAAAGATATT--------------------T-----------------------------------------TAAAATTC-AATAAAATAATA------TATTG---AA----------------------------------------------------------------ATTAA---TATTAATA-ACCATAGCTT----------ATTTAAGTATTAAAAAATT-ATTTTTG-------GCAATCAAAACTAGAACTTAGA-----------------------------------------------------------------------------------------AA-------------GTTTATACATTATATAACCACTTAAC-----------TCTTGTTT-----AATGCAGATCACAGAACTTAATCTGGACAATTGTCGGAGTACAAGCATCGTTGGCCT
dm3 chr2R:13756264-13756544 - C----T--GTTCGCTTTGCGTCAAAAAATGTTACAAA---TGTGACCAGACTGCG----AGGCTTGA-ATATTCCACAATGAAT----ACAT----------------------------------------------------------------------CAAATATACCAAAATA-ATCGGTA-----------TCG----TT-TG------TTCTTGT-----C---------TTCAATAACTAATATCGATAAGTA--------------------------------------------------------------AT-AATTGGTTTAAAAATTATTCAA----------------------------------AACTCGTT-------------TCATAT------------------------AAA-----------------------------------------------------------------------------------------------------------------------------------------------------TAAAATGAACTA--CTTCTAA-TTTAT-------------GTATTTA-----------CTCTCAAC-----------CCTATTAT-----AACCTAGATCACAGAGCTGAATCTGGACAACTGCCGTAGTACAAGCATCGTTGGCCT
droSim2 2r:14446211-14446475 - dsi_16006 TC---T--GTTCGCTTTGCGTCAAAAATTTTCACAAA---TGTGACCAGACTGCG----ATTCTTGA-ATATTCCAAAATGTAT----ACAT----------------------------------------------------------------------CAAATATACCAAAAGA-ATCGGTA-----------TCG----AT-TG------TTGTTTT-----C---------TTCGATAGCTGGTATCGATAAGTA---------------------------------------------------------------T-AATTGGTTTAAAAATTATTCAA----------------------------------AACTTGTT-------------TCAAAC------------------------AAA-----------------------------------------------------------------------------------------------------------------------------------------------------TAAAATTAACTA--C-----------------------------TTT-------T-----------TTTTATTTAAT-----TTT-----AACCTAGATCACAGAGCTGAATCTGGACAACTGCCGTAGTACAAGCATCGTTGGCCT
droSec2 scaffold_1:11252053-11252317 - C----T--GTTCGCTTTGCGTCAAAAATTTTCACAAA---TGTGACCAGGCTGCG----ATTCTTGA-ATATTCCACAATGTAT----ACAT----------------------------------------------------------------------CAAATATACCGAAAGA-ATCGGTA-----------TCG----TT-TG------TTGTTTT-----C---------TTCGATAGCTGGTATCGATTACTT--------------------------------------------------------------ATCGATTGGTTTAAAAATGATTCAA----------------------------------AACTAGTT-------------TTAAAC------------------------AAA-----------------------------------------------------------------------------------------------------------------------------------------------------TAAAATTAACTA--C-----------------------------TT--------T-----------TTTTATTTAAT-----TTT-----AACCTAGATCACAGAGCTGAATCTGGACAACTGCCGTAGTACAAGCATCGTTGGCCT
droYak3 2R:15426267-15426515 + C----T--GTTCGCTTTGCGTCAAAAATTTTCACAAA---TGTGACCAGGCTGCG----AGGTTTAG-ATATTCCAA------------CAC----------------------------------------------------------------------GAAATATACCAAATGAAATCGTTT-----------TTG----TT-CG------TTGCTT----------------TCCGATAACTTCTATCGATAGATA---------------------------------------------------------------G-AATTTGTTTAA-ATTCATTCAA----------------------------------AATTGATT-------------T-------------------------------------------------------------A---------------------------------------------------------------------------AAAAACA----------------------------------------AATTAACTAAT--------TAAAA--------------A---------------------------AAC-------TTTTGA-----ATCGTAGATCACAGAGCTGAATCTGGACAACTGCCGGAGTACAAGCATCGTTGGCCT
droEre2 scaffold_4845:7983843-7984141 - TT-TCT--GCTCGCTTTGCGTCAAAAATTTTCACAAA---TGTGACCAGGCTGCG----GGGTTTAA-ATATTCCACAATGCAT----ACAT----------------------------------------------------------------------CAAATATACCAAATGAAATCGGGT----------------TTTT-TC------TTGCTT----------------TCCGATAACTACTATCGATGAATG---------------------------------------------------------------G-AATTTGTTTAA-ATTCATTCAA----------------------------------AATCAATT-------------TAAAAA------------------------AAATAATAATTTACC-TA--TT-------------------------------------------------------------------------------------------------------------------------------------AATTAACTA--TTATTAA-TTGAA-------------GAATTTACAAT----AA-CTCTTAAC-----------CTTCTTAA-----ACCCTAGATCACAGAGTTGAATCTGGACAACTGTCGGAGTACAAGCATCGTTGGCCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CT-TTTGCGCTTG--TTCTGCCACACGTTCACACAGA---CATGGC-GGACTGTCTGTCAGACCCGC-AGCATGCTGAAAACAC----G--GCCAGTGTGACCAAATT-GTCTAAC----------------------------------------CC----AA----------AATATGCC----ACTTTCCGTTA-----AAGAC-A--------------------------------------A---------------------------------------------------------------------------------------------AA--------ATTGCTTGTAGAAAATACCAAA----------------A----------GAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGATA----------TTGAA-------------ATATTCA-------T-----------TTTTTTCTTAT-----TTC-----CACACAGATCACAGAATTGAATCTGGACAATTGCAGGAGTACAAGCATTGTTGGCCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........TTG--TTCTGCCACACGTTCACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGTACAAGCATTGTTGGC..2111.001000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGACAATTGCAGGAGTACA..............2211.001000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTGCAGGAGTACAAGC...........1911.001000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTGCAGGAGTACAAGCAT.........2111.001000000000000000000000000000010000000000000000000000000000000000
............................................................................................CCAGTGTGACCAAATT-GTCTAAC----------------------------------------CC----AA----------A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACAATTGCAGGAGTAC...............1911.001000000000000000000000000000000000000000000000000000000000000100
.........CTTG--TTCTGCCACACGTTCAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAGTACAAGCATTGTTG....2111.001000000000000010000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCATTGTTGGCCT1511.001000000000000000000000000000000000000000000000100000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGCAGGAGTACAAGCATT........2111.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGGAGTACAAGCATTGT......2111.001000000000000000000000000000000000000010000000000000000000000000
.........................................ATGGC-GGACTGTCTGTCAGACCCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000000000000000000000000000000000000000000000000000000000000
.............................CACACAGA---CATGGC-GGACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000010000000000
.................................CAGA---CATGGC-GGACTGTCTGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
............................TCACACAGA---CATGGC-GGACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACAGAATTGAAC...................................15160.061000000000000000000000000000000000000000000000000000000000100000
droMoj3
CT-TTTGCGCTCG--TTCTGGCACACGTTCACACAGA---CATGGC-AGACTGTCAG--AGACTCGC-AATACGCTGAATACAC----CG--GCAGTGTGACCAAATC-GTCTAAT----------------------------------------GT----TA----------AATATGCC----CATTTCC-TTA--TGCAGCAC-A--------------------------------------GGAATCGCTGACAG---------------------------------------------------------------T-ACG----------------------------------AAATACCAAAATGAAGTTATATGAGAT----------GA--------------ATATTTATG-AAATGAA---TT--------------------------TG---------------------------------------------------------------------------AATAATA----------------------------------------AATT----A--T-----------------------------TTT-------------------CCC----------TTTTCTATAAACGCACAGATATTAGAACTGAATCTGGATAACTGCAGGAGTACAAGCATTGTTGGCCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....TTGCGCTCG--TTCTGGCACAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.........................................ATGGC-AGACTGTCAG--AGACTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
..........................................TGGC-AGACTGTCAG--AGACTCGC-........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
............................................................................................................................................................................................................CAC-A--------------------------------------GGAATCGCTGACAG---------------------------------------------------------------T-ACG----------------------------------AA...............................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.............................................C-AGACTGTCAG--AGACTCGC-A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droGri2
CT-TTTACGCTTGTTTTCTGCCACACGTTCACACAGA---CATGGC-GGACTGTC----AGACTTGC-ATCTTGCTGAATATAC----ACATCCAGTGTGACCAAATCCATCTAAC----------------------------------------TT----TA----------AAAATGCC----CATTTCCGTTT---------T-A--------------------------------------A---------------------------------------------------------------------------------------------AA--------TTAGATTGTTGCAAATACTAAA----------------A----------GATTTT---GG----GATATTTATTGAAATGA-----T--------------------------TG---------------------------------------------------------------------------AAAA---------------------------------------------TTAAATA--T--------------------------------------------------------------------TT-----TGAACAGATCACAGAACTGAATCTGGACAATTGCCGGAGTACAAGCATCGTTGGCCTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAATCTGGACAATTGCCGGAGTACA..............2711.00110
droWil2
A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACC---------------------------------------------------------------AAA------------------------------------------------------------------------------------------------------------------------------------TAAAAAT---------------TTAATCA--T---------GAT-----------------TT--------T-----------TCTTGTCCATT--------------TTTCAGATCACAGAACTGAATCTAGATAATTGTCGGAGTGCAAGCATTGTTGGCCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATCACAGAACTGAATCT.................................2020.50110000
dp5
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAGATCCAAGAGCTGAACCTGGATAACTGCCGTAGTACAAGCATTGTTGGCCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAGCTGAACCTGGATAACTGC.......................2414.0040000001030
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGAGCTGAACCTGG...............................1911.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGAGCTGAACCTGGAT.............................2111.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCCAAGAGCTGAACCTGG...............................2111.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCTGAACCTGGATAAC..........................2011.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCAAGAGCTGAACCTGGA..............................2111.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCCAAGAGCTGAACCTG................................2011.0010100000000
droPer2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAGATCCAAGAGCTGAACCTGGATAACTGCCGTAGTACAAGCATTGTTGGCCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAACCTGGATAACTGCC......................2012.002200000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCAAGAGCTGAACCTGG...............................2011.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGTAGTACAAGCATTGTTGGC..2411.001001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCTGAACCTGGATAACTG........................2111.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGAGCTGAACCTGGATAACTGC.......................2611.001010000
droAna3
CT-TCT--GCTTTTTCT-CTTCACACGTTCACACAGACAGTGTTGCCAGTT------------TCT-----------------------------------CCAAA-T-GTCTACCATTTTCCTGAAAATCCCAAAGCGGCAAGGTCACTCTTAGTTTTAATTAAAGCTATCGAAAGA-----------------------------------------------------------------------TATCGATACTT---------------------------------------------------------------TTCGTTATATTT----------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------AAAAATA-----------------AAATAATAATTTTTAATCAATAAAAAT----G-------------------------------------------------------------------TTTTCA-----TTTTTAGATCACAGAGTTGAATCTGGATAATTGCCGGAGTACAAGCATCGTGGGCCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTGGATAATTGCCGGAGTACA..............2511.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGCCGGAGTACAAGCATCGTGGGC..2711.001000001
...............CT-CTTCACACGTTCACACAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
droBip1
CT-TCT--GCTTTTTCT-CTTCACACGTTCACACAGACAGTGTTGCCAGGTGGCC----GTTTTCA-----------------------------------CCAA--T-GTCTATCAATTGCCTGAAAATACCAAAACGGGATGGTCACTCT---------------------------------------------------------------TAGTT------------------TTAATGAAAGATATCGATACTT---------------------------------------------------------------ATCGTTATATTT-AAAAAAATATAA----------------------------------TA---------------------------------TATTTATTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------AAAT----A----------TTTAA-------------ATAT--------------------------------------TTA-----CTTTCAGATCACAGAGTTGAATCTGGATAATTGCCGGAGTACAAGCATCGTGGGCCTSizeHit CountTotal NormTotal
No Reads
droKik1
TT-TTTGCGTTTGCTTT-----------------CAG---TGTTGCCAG-CTGAA----AA-TTTGG-CTTTCCCCC------------TAA----------------------------------------------------------------------AAAATC--TTGA-A--------------------------------------------------------------------AACATTATCGATATACTTATTCTTGGCGACTCAACCATCGATAAAAAGC---TGTTCTGTAATCGATAATCGAAGACTT-T-ATTTTA--T-AAACAAA--------TTGGATTTAAGTACATACTCAA----------------ACCAGAATAGGGAACTT---GGATAGGA-TTCAATTAAAACAA-----T--------------------------T----------------------------------------AAAATTTAAATTT-------------------------------------------------------------------------------------------AAA-------------GCTTGTATTCTAATTTATTA-----------TTGAATTCT--ATT-----TACACAGATCACAGAGCTGAATCTGGACAACTGCCGGAGTACAAGCATCGTTGGCCTSizeHit CountTotal NormTotal
No Reads
droFic1
TTTTCT--GCTCGCTTTGCGTCAATTTCTTACACCAG---TGTGACCAAATCATA----GCCTACAA-ATTTTCCAT--TGG--TCTTTGGC----------------------------------------------------------------------ACAATATACCTAAAAACACCA---C----------TTG----AT-CG------AACTC-------C---------GTCGATATGGCCTATCGATAACTT---------------------------------------------------------------T-ATTAAATTC-AAAAAAATTAAA----------------------------------TACTAGTT----------GATTTTTAA------------------------AAA-----------------------------------------------------------------------------------------------------------------------------------------------------TAAA-TTAAATGAT--------TTTAA-------------GTCTTTATTCT----TATTA------TGTCAC-------TTTTTT-----ATCCCAGATCACAGAACTGAATCTGGACAATTGCCGAAGTACAAGCATTGTTGGCCTSizeHit CountTotal NormTotal
No Reads
droEle1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAGATCACAGAGCTGAATCTGGACAATTGCCGGAGTACAAGCATAGTTGGCCTSizeHit CountTotal NormTotal
No Reads
droRho1
TT-TCT--GCTCGCTTTGGGTCAAAATTGTACACCAG---TGTGCCCAAACTGAA----GATTTCAA-ATTTGCCAT--TGG--TCTTTGAC----------------------------------------------------------------------AAAATATAGTTAAAAATACCA---CATACCC-TTA--AATTGTA-TCGAAAA-TT-CAA----------------ACCGATAGATCTTATCGATAAATGTAT--------------------------------------------------------------TATTGAATTAGAAATTATTAAA----------------------------------AACA-------------------------------------------------------------------------------------------------------------------GTT-AAAATACAAAA----------------------------AAAAAATAATATTTAATATAA--------------------CGAGATAAAATA--ATTCTAGCTTTAAGTAAACAACTAAATTATTTATTCT----CACAA------TTTTATTTAAT-----TTA-----CCCTCAGATCACAGAGTTGAATCTGGACAATTGCCGGAGTACAAGCATCGTTGGCCTSizeHit CountTotal NormTotal
No Reads
droBia1
TT-T-------------------------TACACCAA---TGTGACCAAACTCTA----GCGTTTCA-AGAATCTAAAATGCTC----CGAT----------------------------------------------------------------------AAAATA--TCGAGA--------------------------T------------TTGATT------T---------GACGATAGACGCTATCGATATGTTTATT--------------------TAGAAAGCAATTGTTT--------------------------TG---------------------------------AA-ATATTTTAATT---------------------------------------------------------------------------------------------AAGTATTTTAAAGTTTGTCCTTTTTAAAAAGCGTTCCTAAGTACACTTTGGTTGGTTAATAAAATATATCCCAAAAATA----------------------------------------AATGAA-----------------------------------TTATTCT----AACAA------CTTCAC------TTCCTTT-----ACCCTAGATCACAGAGCTGAATCTGGACAATTGCCGGAGTACGAGCATCGTTGGCCTSizeHit CountTotal NormTotal
No Reads
droTak1
TTTTCT--GCTCGCTTT-CGTCAAAATTTTACACCAA---TGTGACCAAACTGGG----GCGCTCAA-ATAATCCTAAATGCTC----CGAT----------------------------------------------------------------------AAAATATACTGAAA--TATCG---------------------CT-TG-----GCTGCTTGAAATACATTTTGATGGACGATAAATAGTATCGATAAACT--------------------------------------------------------------------------AA-ACATTTTCAAAAGTTATATTTTTGAAAAGATCAA-----------------------------ATTTT---GT----A-------------------------ATTTTCC-TA--AATATTATATATA---------------------------------------------------------------------------AATAACA----------------------------------------AATT----A--T------------------------------------------------------TAT-------TTTTTA-----ATCCTAGATCACAGAGCTGAATCTGGACAATTGCCGGAGTACAAGCATCGTTGGCCTSizeHit CountTotal NormTotal
No Reads
droEug1
TT-TCT--GCTCGCTTTGCGTCAAAATTTTTTACCAA---TGTGACCAAACTGGA----GGGTTTAAAAAAATCCAAAATGGTT----TA------------------------------------------------------------------------CAAAAATACTAATAAA---CTT---------------ATTTGTT-TA--------GCTA----------------GACGAGAAATACTATCGATAAAGATATT--------------------T-----------------------------------------TAAAATTC-AATAAAATAATA------TATTG---AA----------------------------------------------------------------ATTAA---TATTAATA-ACCATAGCTT----------ATTTAAGTATTAAAAAATT-ATTTTTG-------GCAATCAAAACTAGAACTTAGA-----------------------------------------------------------------------------------------AA-------------GTTTATACATTATATAACCACTTAAC-----------TCTTGTTT-----AATGCAGATCACAGAACTTAATCTGGACAATTGTCGGAGTACAAGCATCGTTGGCCTSizeHit CountTotal NormTotal
No Reads
dm3
C----T--GTTCGCTTTGCGTCAAAAAATGTTACAAA---TGTGACCAGACTGCG----AGGCTTGA-ATATTCCACAATGAAT----ACAT----------------------------------------------------------------------CAAATATACCAAAATA-ATCGGTA-----------TCG----TT-TG------TTCTTGT-----C---------TTCAATAACTAATATCGATAAGTA--------------------------------------------------------------AT-AATTGGTTTAAAAATTATTCAA----------------------------------AACTCGTT-------------TCATAT------------------------AAA-----------------------------------------------------------------------------------------------------------------------------------------------------TAAAATGAACTA--CTTCTAA-TTTAT-------------GTATTTA-----------CTCTCAAC-----------CCTATTAT-----AACCTAGATCACAGAGCTGAATCTGGACAACTGCCGTAGTACAAGCATCGTTGGCCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGCTGAATCTGGACAACTGCCGTAG..................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCACAGAGCTGAATCTGGAC.............................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCTGAATCTGGACAACTGCCGT....................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACAACTGCCGTAGTAC...............1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACAGAGCTGAATCTGGACAACTGCCG.....................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTACAAGCATCGTTGGC..1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGCTGAATCTGGACAACTGCC......................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGAATCTGGACAACTGCC......................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GCTTTGCGTCAAAAAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGTAGTACAAGCATCGTTGGC..2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........CGCTTTGCGTCAAAAAATGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAATCTGGACAACTGCCGT....................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTACAAGCATCGTTGGCC.2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAGCTGAATCTGGAC.............................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACAGAGCTGAATCTGGACAACTGC.......................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACTGCCGTAGTACAAGCATCGTT.....2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACAGAGCTGAATCTG................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAGTACAAGCATCGTTGGC..2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAT-----AACCTAGATCACAGAGCTT......................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCTGAATCTGGACAACTGCCGTAGT.................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................TGT-----C---------TTCAATAACTAATATCGATAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGACAACTGCCGTAGT.................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAATCTGGACAACTGCCGTAGT.................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................TACAAA---TGTGACCAGACTGCG----AGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.....................................................................TATTCCACAATGAAT----ACAT----------------------------------------------------------------------CAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAGTACAAGCATCGTTGG...2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGACAACTGCCGTAGTACAA.............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................AATA-ATCGGTA-----------TCG----TT-TG------TTCTTGT-----C---------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----AACCTAGATCACAGAGCTGA.....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCAAC-----------CCTATTAT-----AACCTAG..................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTAGATCACAGAGCTGAATCTG................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACAACTGCCGTAGTACAAG............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGAGCTGAATCTGGACA............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTAGATCACAGAGCTGAATCT.................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
...................................................TGCG----AGGCTTGA-ATATTCCACAATGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTACAAGCATCGTTGGCC.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTGGACAACTGCCGTA...................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCTGAATCTGGACAACTG........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................TGCG----AGGCTTGA-ATATTCCACAATGAAT----A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAGTACAAGCATCGTTGGCC.2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACAGAGCTGAATCTGGACAACTGCC......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCTGAATCTGGACAACTGCC......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGAGCTGAATCTGGACAACTGCCG.....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................CAAA---TGTGACCAGACTGCG----AG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGCTGAATCTGGACAACTGC.......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATCTGGACAACTGCC......................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTAGTACAAGCATCGTTGGC..2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGAATCTGGACAACTGCCGTAG..................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCCGTAGTACAAGCATCGTTG....2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGTAGTACAAGCATCGTTGG...2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGAATCTGGACAACTGCCGTAG..................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTGCCGTAGTACAAGCATCGTTGGC..2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGACAACTGCCGTAGTAC...............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
TC---T--GTTCGCTTTGCGTCAAAAATTTTCACAAA---TGTGACCAGACTGCG----ATTCTTGA-ATATTCCAAAATGTAT----ACAT----------------------------------------------------------------------CAAATATACCAAAAGA-ATCGGTA-----------TCG----AT-TG------TTGTTTT-----C---------TTCGATAGCTGGTATCGATAAGTA---------------------------------------------------------------T-AATTGGTTTAAAAATTATTCAA----------------------------------AACTTGTT-------------TCAAAC------------------------AAA-----------------------------------------------------------------------------------------------------------------------------------------------------TAAAATTAACTA--C-----------------------------TTT-------T-----------TTTTATTTAAT-----TTT-----AACCTAGATCACAGAGCTGAATCTGGACAACTGCCGTAGTACAAGCATCGTTGGCCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCGTAGTACAAGCATCGTTGGCCT2712.00202000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAATCTGGACAACTGCC......................1911.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGACAACTGCCGTAGTA................2111.00100000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGAATCTGGACAACTGCCGTAG..................2511.00100000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGACAACTGCCGTAGTACAAGCAT.........2711.00100000000000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGAATCTGGACAACTGCC......................2211.00110000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACAGAGCTGAATCTGGACAACTGC.......................2611.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAGTACAAGCATCGTTGGCCT2311.00110000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATCTGGACAACTGCCGTAGTACA..............2611.00100000000000010000
............................................................................................................................................................................................................AT-TG------TTGTTTT-----C---------TTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15160.19300000000003000000
droSec2
C----T--GTTCGCTTTGCGTCAAAAATTTTCACAAA---TGTGACCAGGCTGCG----ATTCTTGA-ATATTCCACAATGTAT----ACAT----------------------------------------------------------------------CAAATATACCGAAAGA-ATCGGTA-----------TCG----TT-TG------TTGTTTT-----C---------TTCGATAGCTGGTATCGATTACTT--------------------------------------------------------------ATCGATTGGTTTAAAAATGATTCAA----------------------------------AACTAGTT-------------TTAAAC------------------------AAA-----------------------------------------------------------------------------------------------------------------------------------------------------TAAAATTAACTA--C-----------------------------TT--------T-----------TTTTATTTAAT-----TTT-----AACCTAGATCACAGAGCTGAATCTGGACAACTGCCGTAGTACAAGCATCGTTGGCCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAATCTGGACAACTGCCGTA...................2311.0010100
droYak3
C----T--GTTCGCTTTGCGTCAAAAATTTTCACAAA---TGTGACCAGGCTGCG----AGGTTTAG-ATATTCCAA------------CAC----------------------------------------------------------------------GAAATATACCAAATGAAATCGTTT-----------TTG----TT-CG------TTGCTT----------------TCCGATAACTTCTATCGATAGATA---------------------------------------------------------------G-AATTTGTTTAA-ATTCATTCAA----------------------------------AATTGATT-------------T-------------------------------------------------------------A---------------------------------------------------------------------------AAAAACA----------------------------------------AATTAACTAAT--------TAAAA--------------A---------------------------AAC-------TTTTGA-----ATCGTAGATCACAGAGCTGAATCTGGACAACTGCCGGAGTACAAGCATCGTTGGCCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCTGAATCTGGACAACTGCCGGA...................2614.00400000000004
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAATCTGGACAACTGCCGGA...................2311.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGAGCTGAATCTGGACAACTGCCGGA...................2911.00100000010000
.........................................................................................................................................................................................T-----------TTG----TT-CG------TTGCTT----------------TCCGATAACTTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAGCATCGTTGGCCT1911.00101000000000
droEre2
TT-TCT--GCTCGCTTTGCGTCAAAAATTTTCACAAA---TGTGACCAGGCTGCG----GGGTTTAA-ATATTCCACAATGCAT----ACAT----------------------------------------------------------------------CAAATATACCAAATGAAATCGGGT----------------TTTT-TC------TTGCTT----------------TCCGATAACTACTATCGATGAATG---------------------------------------------------------------G-AATTTGTTTAA-ATTCATTCAA----------------------------------AATCAATT-------------TAAAAA------------------------AAATAATAATTTACC-TA--TT-------------------------------------------------------------------------------------------------------------------------------------AATTAACTA--TTATTAA-TTGAA-------------GAATTTACAAT----AA-CTCTTAAC-----------CTTCTTAA-----ACCCTAGATCACAGAGTTGAATCTGGACAACTGTCGGAGTACAAGCATCGTTGGCCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAACTGTCGGAGTACAAGCATCGTT.....2811.0010001000

Generated: 05/19/2015 at 02:13 PM