ID:

dvi_704

 Coordinate:

scaffold_10324:264930-265080 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-1.1 -0.8 -0.7

Flybase annnotation

exon [dvir_GLEANR_15334:1]; CDS [Dvir\GJ15029-cds]; intron [Dvir\GJ15029-in]

Repeatable elements

NameClassFamilyStrand
(TTG)nSimple_repeatSimple_repeat+
mature
star
  1. dvi_704  scaffold_10324:265018-265037 -
  2. scaffold_12728:286094-286113 -
  3. scaffold_12875:4376700-4376719 -
  4. scaffold_12875:13139116-13139135 -
  5. scaffold_12875:15582862-15582881 -
  6. scaffold_12875:16556586-16556605 -
  7. scaffold_12928:2087073-2087092 -
  8. scaffold_12928:3097514-3097533 -
  9. scaffold_12963:3285037-3285056 -
  10. scaffold_12970:6013805-6013824 -
  11. scaffold_12970:9524488-9524507 -
  12. scaffold_13042:801444-801463 -
  13. scaffold_13047:3920446-3920465 -
  14. scaffold_13047:5426664-5426683 -
  15. scaffold_13047:11730435-11730454 -
  16. scaffold_13047:15468606-15468625 -
  17. scaffold_13049:9450200-9450219 -
  18. scaffold_13049:13393942-13393961 -
  19. scaffold_13049:17691144-17691163 -
  20. scaffold_13049:22346638-22346657 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AACACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAAAGCAGGTATGTTTCACATTTAACCTTGTTTTTAAAATACATAACCAAATAATAATAACAACAACAACAACAGAATATCAGCAATTCCAATAGCAATGAAACTACAATGAGTGTTGACAAATTTTGCACATATCGGCATAAGCCAACACACACAGTGCTGCCAACTTAATAGCACAGCGGCTATATTGCCATTTCGCTCGCACATGC
**************************************************((((.....(((........))).......)))).............................****************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 M047
female body
 SRR060665
9_females_carcasses_total
 SRR060681
Argx9_testes_total
 SRR060676
9xArg_ovaries_total
 M061
embryo
 SRR060660
Argentina_ovaries_total
 SRR060664
9_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 V116
male body		 SRR060683
160_testes_total
 SRR060679
140x9_testes_total
 SRR060669
160x9_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060675
140x9_ovaries_total
.....................................................................................................................................................................................................................TGGCACAGCGGTTATCTTGCC................. 21 3 4 3.00 12 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TGGCACAGCGGTTATCTTGC.................. 20 3 9 2.56 23 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TGGCACAGCGGTTATGTTGCC................. 21 3 3 2.33 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......TGAACAAGCGAAGTTTTAATG................................................................................................................................................................................................................................ 21 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TGGCACAGCGGTTATGTTGC.................. 20 3 11 1.45 16 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TAGCACAGCGGTTATCTTGCC................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................ACACACAGTGCTGCCAACTTAATAGC.................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GCTGCCAACTTAATAGCAC................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................AAGTTTTAATGAGGGCAGCGA...................................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........AAGCGAAATTTTAATGAGAGC........................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................TGATGAGAGCGGCGAGCAAAT................................................................................................................................................................................................................ 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................AGCGAGCAAATAAAGCAG......................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................GTATGTTTCACATTTAACCTTGT.................................................................................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................ATGAGAGCAGCGAGCAAATA............................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................TTTAATGAGAGCAGCGAGCA................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................TAGCACAGCGGTTATCTTGCCT................ 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............CGAAGTTTTAATGAGAGCAGCA....................................................................................................................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TAGCACAGCGGTTATGTTGCT................. 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TAGCAGAGCGGTTATGTTGCC................. 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TGGCACAGCGGTTATATTGTC................. 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................CAAACCGGCGTAAGCCAACA........................................................... 20 3 9 0.22 2 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................TGGCACAGCGGTTATATGGC.................. 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TATTGCACATCTCGGCCTAA.................................................................. 20 3 20 0.10 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1
...............................................................................AATACATCACCAAATAATGCT....................................................................................................................................................... 21 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................TGGCACATCGGTTATATTGC.................. 20 3 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TAATAATAACAACAACAACA.......................................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................AATTACAAGAGCAATGACACT........................................................................................................ 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................TGAAACTACAAAGGGTGTC............................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................CAGCACAGCGTGTATATTGC.................. 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TTGTGCACTTGTTCGCTTTAAAATTACTCTCGTCGCTCGTTTATTTCGTCCATACAAAGTGTAAATTGGAACAAAAATTTTATGTATTGGTTTATTATTATTGTTGTTGTTGTTGTCTTATAGTCGTTAAGGTTATCGTTACTTTGATGTTACTCACAACTGTTTAAAACGTGTATAGCCGTATTCGGTTGTGTGTGTCACGACGGTTGAATTATCGTGTCGCCGATATAACGGTAAAGCGAGCGTGTACG
******************************************************************************************************************************************((((.....(((........))).......)))).............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060679
140x9_testes_total
 V116
male body		 SRR060665
9_females_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060687
9_0-2h_embryos_total
 V047
embryo
 M027
male body		 SRR060682
9x140_0-2h_embryos_total
 SRR060689
160x9_testes_total
 SRR060667
160_females_carcasses_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060671
9x160_males_carcasses_total
....................................................................................................................CTTATAGTCGTTAAGGTTATC.................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................CGTCGCTCGTTTATTTCGTCC........................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................CGCTCGTTTATTTCGTCCATA..................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................AAAAATTTTATGTATTGGTTT.............................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.TGTGCACTTGTTCGCTTTAAA..................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................TCCATACAAAGTGTGAATC........................................................................................................................................................................................ 19 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............TCGCTTTAAAATTACTCTCGT.......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..GTGCACTTGTTCGCTTTAAAA.................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TATCGTGTCGCCGATATAAC................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.TGTGCACTTGTTCGCTTTAAAATTACT............................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................ATGTGGATAGCCGAATTCG................................................................ 19 3 16 0.56 9 0 0 0 0 0 0 0 0 0 3 3 0 1 1 1
...............................ATCACTCGTTTATTTCGTACA....................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............TCGCTTTAAAGTTTCTCTCTT.......................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................TGTTGTTCTATAGTCGTAAAG........................................................................................................................ 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................CCTCTTCGGTTGTGTGTGT..................................................... 19 2 17 0.06 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................ATGTGTATGGCCGAATTCG................................................................ 19 3 17 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_10324:264880-265130 - dvi_704 AACACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAAAGCAGGTATGTTTC----AC-----------ATTTAACCT-----TGTTTTT--------------------AAAA----------------------------------------TACATA-------ACCAAAT------A-ATAATAACAACAACAA---CAACAG------AATATC-----------AGCAATTCCAATAGC------------------------AATGAA---------------------AC-TACAATGAGTGTTGACAAATTTTGCACATATCG-------------------------------------------------------------------------GCATAAGCCAACACACACAGTGCTGCCAACTTA-ATA--GC-----ACA------GCG-------------------G--CTATATTGCCATTTCGCTCGCACATGC
droMoj3 scaffold_6496:2079157-2079405 - AACACGTGAATAAACGAAATTTTAATGAGAGCAACGAACAAATAAAGCAGGTACGTTTC----AC-----------ATTTAACCT-----TGTTTTT--------------------AAAA----------------------------------------TACATA-------ACCAAAT------A-ATTGAAACAA---TAACAACAACAA------C---------------AAGCAATTGCAATAGC------------------------AATAAA---------------------AA-TACAATAAGTGTTGTCAAATTTTGCACATATCGGCTGTGAGT---------------------------------------------------------------CAA--------ACACAGGCAGAGCTGCCAACTTA-ATC--GC-----ACA------ACG-------------------G--CTATATTGCCATTTCGCTCGCACATGC
droGri2 scaffold_15245:15359384-15359630 + AACACGTGAACAAACGAAATTTTAATGAGAACAGCGAGCAAATAAAGCAGGTACGTTTTA---AC-----------ATTTAACCT-----TGTTTT----------------------AAA----------------------------------------TACATAA-------CCAAAT------A-GTAATAACACCAACAACAACAAAAA------T--AGC-----------AGCAATTGCAATAGC------------------------ATTGAAACAGTAAACG--------------------------------------------------------------------------------------------AGTGTTGGCAAAGTGTGC---ACATATCGTGAGTGGT------GTCAGTGCTGCCAACTTA-ATC--GC-----ACACA----GCG-------------------G--CTATATTGCCATTTCGCTCACACATGC
droWil2 scf2_1100000004513:3331447-3331576 - C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAACAATAACATCCA------A---------------------GTCC---------------------------------------------TAGTGTT---------------------GGAGAATTTTGCACAGCTCATTTGTAGGGGGT------------AGGG---------G-C-------------------------------------------AAGCTTCCAGTGTTGTAAAGCTT-TGG--CC-----ATA------TC-------------------AG--CACTATTGCCATTTCACTCGCTCATGC
dp5 3:15906586-15906771 - AACACGTGAACAAGCGAAATTTTAATGAAACCAGCGAGCAAATAAACCAGGTACGTTCA-----G-----------ATTTATTCA-----TATTTTTCTCGCCTCAATACCAATTTTGGG-TAGAA-----------------------A-------------------------G-AAAA------C-AATTTGTCAACAAAAACAACAAGAA------A---------------AACCGATTTC---------------------------------------------AAGTGTTGCGAAGGTTAGCAC-----------------------------------------------------------------------CAGTGCT-------------------------------------GCCAGATTT-----------TG----------------------------------------------------------------------
droPer2 scaffold_4:855203-855406 + AACACGTGAACAAGCGAAATTTTAATGAAACCAGCGAGCAAATAAACCAGGTACGTTCA-----G-----------ATTTATTCA-----TGTTTTTCTCGCCTCAATACCAATTTTGGGATAGAA-----------------------A-------------------------G-AAAA------C-AATTTGTCAACAAAAACAACAAGAA------A---------------AACCGATTTC---------------------------------------------AAGTGTTGCGAAGGTTAGC---------------------------------------------------------------------------------------------------------------------ACCAGTGATGCCAG-ATT-TTG--AG-----AGTCACCATAA------------G------------CTA----------------------
droAna3 scaffold_13266:158192-158485 + AACACGTGAACAAGCGAAATTTTAATGAAACCTGCGAGCATATAAAGCAGGTAAGTCTC----CT-----------AT------------------------------------------ATACATATACATATATGTGTCCCCCA--AA-G---------TTCTCGAATAATTTTT----------TGTTTTTCTTAACGAAAACAACAACAA------AGTGTCCTAGACGAAGA-------------GGGGGGGATGGGGAGGGCATGAGGAAGTTGTGGCTGTGATAA--------------------------------------------------------------------------------------------AGGGTTGCCAAACTGGCACACATATATCGCACCTGGC----C-GCCAGGGTTGCCAA-TTG-GCT--GC-----GCTCACGACCCG-------------------T--CACTATTGCCATTTCACTCGCTCGTGC
droBip1 scf7180000396730:1180301-1180567 + AACACGTGAACAAGCGAAATTTTAATGAAACCTGCGAGCATATAAAGCAGGTAAGTCTC----A------------ATATATACA-----TATTT----------------------------------------------CACCA--AA-GTTCT-------CGAAAAA-------ATTT------TGTTTTTGTCAACGAAAACAACAACAA------AGTGTCC---ATGAAGA-------------GG-------------GGCATGAGGAAGTTGTGGCAGTGCTAA--------------------------------------------------------------------------------------------AGGGTTGCCAAACTGGCACACATATATCGCACCTGGC----C-GCCAGAGTTGCCAA-TTG-GCT--GG-----GCTCACGACCCG-------------------T--CACTGTTGCCATTTCACTCACTCGTGC
droKik1 scf7180000302476:854571-854838 - AGCACGTGAATAAGCGAAATTTTAATGAAACCAGCGAGCAAATAAAGCAGGTGAGTTTG----GCT----------AATTGTCC----------------------------------------------------------GCCAGCGAAT---------TGGACAAGC-------AAATTGTTTTTGACTCTGTCAACAATAACAACAATAG------T---------------G--------------------------------------------------------------------------------------------------------------TCAGAGGGTGACGACTGCGG-G-------GTTCGAATGGTGTTGCCAAACCGTGT-GCATATATCGCACCTGGCTGCCCTGCCAGTGTTGCCAA-TTG-TCC--AC-----ACTCACGACCG------------TCTGCGGAG--CACTATTGCCATTTCACTCGCTCGTGC
droFic1 scf7180000453858:1245404-1245634 + AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAAAGCAGGTGAGTTGTT---AC-----------AGTTTTCCC------------------------------------------------------------AGCAA-T---------TTCATGATC-------AATC------CATTTTTGTCAACAATAACAACAACAA------G---------------G--------------------------------------------------------------------------------------------------------------TGAT------------GAG------------G----TAGTGCTGCCAATTCGTAA---TAATATCGCACCTGGT----CGGCCAGAGTTGCCAA-TTG-TTT--GC-----ACTCACGACTG------------CCCG-AG-T--AACTATTGCCATTTCACTCGCTCGTGC
droEle1 scf7180000491107:1646536-1646768 + AGCACGTGAACAAGCGAAATTTTAATGAAAGCAGCGAGCAAATAAAACAGGTGAGTTGG----AGT----------TTTTG-C---------------------------------------------------------C--CCAGTAAA----------TTGATGAAC-------AATT------CGTTTTTGTCAACCATAACAACAACAA------G---------------G--------------------------------------------------------------------------------------------------------------TGAC------------AGGG-----------G----TAGTGTTGCCAAACTGAAA---ACATATCGCACCTGGC----AAGCCAGAGTTGCCAA-TTG-TAC--GC-----ACTCACGACTG------------GCCC-CGAG--CACTAGTGCCATTTCACTCACTCGTGC
droRho1 scf7180000777217:352960-353192 - AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAACAAATAAAGCAGGTGAGTTGG----AGT----------TTTTG-C---------------------------------------------------------C--CCAGTAAA----------TTCATGAAC-------ATTT------CGTTTTTGTCAACAATAACAACTACAA------G---------------G--------------------------------------------------------------------------------------------------------------TGAC------------AGGG-----------G----TAGTGTTGGAAAACCGTAA---ACATATCGCACCTGGC----CAGCCAGAGTTGCCAA-TTG-TTT--GC-----ACTCACGACTG------------GCCC-CGAA--CACTATTGCCATTTCACTCGCTCGTGC
droBia1 scf7180000301506:1254933-1255190 + AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAAAGCAGGTGAGTGCTT--CGA-----------AATAACTTT-----TCTTTTT-------------------------------------------C--CCACTGAAA----AAATGTTCATGAGC-------AGTC------CATTTTTGTCAACAATAACAACAATAA------G---------------G--------------------------------------------------------------------------------------------------------------GGGC------------AGGG---------G-C----TAGTGTTGCCAAATCGCCG---ACATATCGCACCTGGTTGCCCGGCCGGGGTTGCCAA-TTGTTTTGCGC-----ACTCACGACTG------------GCCG-AGGG--AACTATTGCCATTTCACTCGCTCGTGC
droTak1 scf7180000415401:528650-528893 - AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAAAGCAGGTGAGTTGTATT-GCTAAATCGA---ACTTTTCC--------------------------------------------------------C--CCACTAGAT---------TTCATGAAC-------AATC------CGTTTTTGTCAACAATAACAACAACAA------G---------------G--------------------------------------------------------------------------------------------------------------TGAC------------AGGG-----------C----TAGTGTTGCCAATCCGAAA---ACATATCGCACCTGGT------GCCAGAGTTGCCAA-TTG-TTC--GC-----ACTCACGACTG------------GCCG-AGAG--CACTATTGCCATTTCACTCGCTCGTGC
droEug1 scf7180000409209:699622-699869 + AGCACGTGAATAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAAAGCAGGTGAGTTTC----CA-----------AA-TAT----------TTT------------------------------------------------------------C-------CATGAAC-------ATTT-----TCATTTTTGTCAACAATAACAACAACAA------T---------------G--------------------------------------------------------------------------------------------------------------GGAC------------TGGGAGCCAAAATG-A----TAGTGTTGCCAAATTATAA---ACATATCGGACCTGGGTTCATAACCAGAGTTGCCAA-TTG-TTC--GCAATTCACTCACGACTTCG----------GAGA-AGAGCACACTATTGCCATTTCACTCGCTCGTGC
dm3 chr2R:5465499-5465739 - AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAAATCAGGTAGGTGCC----CA-----------AGTTATTCTACCAAAGTTT------------------------------------------------------------C-------CATGAACCATTTCCAATT------C-ATTTTGTCAACAATAACAACAACATTTTGTAG---------------G--------------------------------------------------------------------------------------------------------------GGGC------------GGGG---------GTT----TAGTGTTGCCAAACCGACA---ACATATCGCACCTGGC----CAACCAGAGTTGCCAA-TTG-TTC--GC-----ACTCACGAATGG-----------------------GCTATTGCCATTTCACTCGCTCGTGC
droSim2 2r:6250527-6250771 - dsi_23723 AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAACTCAGGTAGGTGCC----CC--------CCAAGTTATTCTACCAAAGTTT------------------------------------------------------------C-------CATGAACCATTTCCAATT------C-ATTTTGTCAACAATAACAACAACATTTTGAAG---------------G--------------------------------------------------------------------------------------------------------------GGTT------------GGGG-G-------GTT----TAGTGTTGCCAAACCGACA---ACATATCGCACCTGGC----CAACCAGAGTTGCCAA-TTG-TTC--GC-----ACTCACGAATGG-----------------------GCTATTGCCATTTCACTCGCTCGTGC
droSec2 scaffold_1:3080139-3080384 - AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAACTCAGGTAGGTGCC----CC--------CCAAGTTATTCTACCAAAGTTT------------------------------------------------------------C-------CATGAACCTTTTCCAATT------C-ATTTTGTCAACAATAACAACAAAATTTTGAAG---------------G-------------G------------------------------------------------------------------------------------------------GGGT------------GGGG-G-------GTT----TAGTGTTGCCAAACCGACA---ACATATCGCACCTGGC----CAACCAGAGTTGCCAA-TTG-TTC--GC-----ACTCACGAATGG-----------------------GCTATTGCCATTTCACTCGCTCGTGC
droYak3 2L:18096972-18097215 - AGCACGTGAGCAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAAAGCAGGTGGGTGCC----CA-----------ATTTATTCTACT-ATGTTT------------------------------------------------------------C-------CACGAACCATTTCCAATC------C-ATTTTGTCAACAATAACAACAACTA------G---------------G--------------------------------------------------------------------------------------------------------------TGGT------------GGGG---------G-T----TAGAGTTGCCAAACCGAAA---ACATATCGCACCTGG--------CCAGAGTTGCCAA-TTG-TTC--GC-----ACTCACGAGTTGGCTA-----TTGCCG-AGAG--CACTATTGCCATTTCACTCGCTCGTGC
droEre2 scaffold_4929:8890814-8891068 + AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAACAAATAAAGCAGGTGGGTGCC----CC----------AAGTTATTCTACTAACGTTT------------------------------------------------------------C-------CATGAACCATTTTCAATT------T-ATTTTGTCAACAATAACAACAACAA------G---------------G--------------------------------------------------------------------------------------------------------------TGGT------------GGGG---------G-G----TAGTGTTGCCAAATCGAAA---ACATATCGCACCTGGC----CAACCAGAGTTGCCAA-TTG-TTC--GC-----ACTCACGAGTTGGCTAGAGCATTGCCG-AGAG--CACTATTGCCATTTCACTCGCTCGTGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AACACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAAAGCAGGTATGTTTC----AC-----------ATTTAACCT-----TGTTTTT--------------------AAAA----------------------------------------TACATA-------ACCAAAT------A-ATAATAACAACAACAA---CAACAG------AATATC-----------AGCAATTCCAATAGC------------------------AATGAA---------------------AC-TACAATGAGTGTTGACAAATTTTGCACATATCG-------------------------------------------------------------------------GCATAAGCCAACACACACAGTGCTGCCAACTTA-ATA--GC-----ACA------GCG-------------------G--CTATATTGCCATTTCGCTCGCACATGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................ACACACAGTGCTGCCAACTTA-ATA--GC-----.............................................................2611.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCAACTTA-ATA--GC-----AC...........................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...........AAGCGAAATTTTAATGAGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
................................AGCGAGCAAATAAAGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000001000000000000000000000000000000000000
..................................................GTATGTTTC----AC-----------ATTTAACCT-----TGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
........................ATGAGAGCAGCGAGCAAATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
....................TTTAATGAGAGCAGCGAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................T------A-ATAATAACAACAACAA---CA.....................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
AACACGTGAATAAACGAAATTTTAATGAGAGCAACGAACAAATAAAGCAGGTACGTTTC----AC-----------ATTTAACCT-----TGTTTTT--------------------AAAA----------------------------------------TACATA-------ACCAAAT------A-ATTGAAACAA---TAACAACAACAA------C---------------AAGCAATTGCAATAGC------------------------AATAAA---------------------AA-TACAATAAGTGTTGTCAAATTTTGCACATATCGGCTGTGAGT---------------------------------------------------------------CAA--------ACACAGGCAGAGCTGCCAACTTA-ATC--GC-----ACA------ACG-------------------G--CTATATTGCCATTTCGCTCGCACATGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................................................................................................................................ATTTTGCACATATCGGCTGT...............................................................................................................................................................................2011.001100000
.......GAATAAACGAAATTTTAATGAGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
...........AAACGAAATTTTAATGAGAGCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
droGri2
AACACGTGAACAAACGAAATTTTAATGAGAACAGCGAGCAAATAAAGCAGGTACGTTTTA---AC-----------ATTTAACCT-----TGTTTT----------------------AAA----------------------------------------TACATAA-------CCAAAT------A-GTAATAACACCAACAACAACAAAAA------T--AGC-----------AGCAATTGCAATAGC------------------------ATTGAAACAGTAAACG--------------------------------------------------------------------------------------------AGTGTTGGCAAAGTGTGC---ACATATCGTGAGTGGT------GTCAGTGCTGCCAACTTA-ATC--GC-----ACACA----GCG-------------------G--CTATATTGCCATTTCGCTCACACATGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................AAATTTTAATGAGAACAGCGAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110
..............CGAAATTTTAATGAGAACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101
droWil2
C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAACAATAACATCCA------A---------------------GTCC---------------------------------------------TAGTGTT---------------------GGAGAATTTTGCACAGCTCATTTGTAGGGGGT------------AGGG---------G-C-------------------------------------------AAGCTTCCAGTGTTGTAAAGCTT-TGG--CC-----ATA------TC-------------------AG--CACTATTGCCATTTCACTCGCTCATGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................................................................CATTTGTAGGGGGT------------AGGG---------G-C-------------------------------------------A................................................................................................2111.00101000
.........................................................................................................................................................................................................................................................................................................................................GCACAGCTCATTTGTAGGGGG.........................................................................................................................................................................2111.00100010
dp5
AACACGTGAACAAGCGAAATTTTAATGAAACCAGCGAGCAAATAAACCAGGTACGTTCA-----G-----------ATTTATTCA-----TATTTTTCTCGCCTCAATACCAATTTTGGG-TAGAA-----------------------A-------------------------G-AAAA------C-AATTTGTCAACAAAAACAACAAGAA------A---------------AACCGATTTC---------------------------------------------AAGTGTTGCGAAGGTTAGCAC-----------------------------------------------------------------------CAGTGCT-------------------------------------GCCAGATTT-----------TG----------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................ATTTTAATGAAACCAGCGAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
....................TTTAATGAAACCAGCGAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................ATTTTAATGAAACCAGCGAGCAAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.................AATTTTAATGAAACCAGCGAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.......GAACAAGCGAAATTTTAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010000000
.......................AATGAAACCAGCGAGCAAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
..................................................................................................TCGCCTCAATACCAATTTTGG................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................C-----------------------------------------------------------------------CAGTGCT-------------------------------------GCCAGATTT-----------T.......................................................................18190.0510100000000
droPer2
AACACGTGAACAAGCGAAATTTTAATGAAACCAGCGAGCAAATAAACCAGGTACGTTCA-----G-----------ATTTATTCA-----TGTTTTTCTCGCCTCAATACCAATTTTGGGATAGAA-----------------------A-------------------------G-AAAA------C-AATTTGTCAACAAAAACAACAAGAA------A---------------AACCGATTTC---------------------------------------------AAGTGTTGCGAAGGTTAGC---------------------------------------------------------------------------------------------------------------------ACCAGTGATGCCAG-ATT-TTG--AG-----AGTCACCATAA------------G------------CTA----------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................TTTAATGAAACCAGCGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCAG-ATT-TTG--AG-----AGT..........................................................1911.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAG-ATT-TTG--AG-----AGTCACCATAA------------G------------.........................26130.081010000
droAna3
AACACGTGAACAAGCGAAATTTTAATGAAACCTGCGAGCATATAAAGCAGGTAAGTCTC----CT-----------AT------------------------------------------ATACATATACATATATGTGTCCCCCA--AA-G---------TTCTCGAATAATTTTT----------TGTTTTTCTTAACGAAAACAACAACAA------AGTGTCCTAGACGAAGA-------------GGGGGGGATGGGGAGGGCATGAGGAAGTTGTGGCTGTGATAA--------------------------------------------------------------------------------------------AGGGTTGCCAAACTGGCACACATATATCGCACCTGGC----C-GCCAGGGTTGCCAA-TTG-GCT--GC-----GCTCACGACCCG-------------------T--CACTATTGCCATTTCACTCGCTCGTGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....GTGAACAAGCGAAATTTTAATGAAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.............GCGAAATTTTAATGAAACCTGCGAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
...........................................................................................................................................................................................................................................GA-------------GGGGGGGATGGGGAGGG............................................................................................................................................................................................................................................................1911.001000001
...............GAAATTTTAATGAAACCTGCGAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
droBip1
AACACGTGAACAAGCGAAATTTTAATGAAACCTGCGAGCATATAAAGCAGGTAAGTCTC----A------------ATATATACA-----TATTT----------------------------------------------CACCA--AA-GTTCT-------CGAAAAA-------ATTT------TGTTTTTGTCAACGAAAACAACAACAA------AGTGTCC---ATGAAGA-------------GG-------------GGCATGAGGAAGTTGTGGCAGTGCTAA--------------------------------------------------------------------------------------------AGGGTTGCCAAACTGGCACACATATATCGCACCTGGC----C-GCCAGAGTTGCCAA-TTG-GCT--GG-----GCTCACGACCCG-------------------T--CACTGTTGCCATTTCACTCACTCGTGCSizeHit CountTotal NormTotal
No Reads
droKik1
AGCACGTGAATAAGCGAAATTTTAATGAAACCAGCGAGCAAATAAAGCAGGTGAGTTTG----GCT----------AATTGTCC----------------------------------------------------------GCCAGCGAAT---------TGGACAAGC-------AAATTGTTTTTGACTCTGTCAACAATAACAACAATAG------T---------------G--------------------------------------------------------------------------------------------------------------TCAGAGGGTGACGACTGCGG-G-------GTTCGAATGGTGTTGCCAAACCGTGT-GCATATATCGCACCTGGCTGCCCTGCCAGTGTTGCCAA-TTG-TCC--AC-----ACTCACGACCG------------TCTGCGGAG--CACTATTGCCATTTCACTCGCTCGTGCSizeHit CountTotal NormTotal
No Reads
droFic1
AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAAAGCAGGTGAGTTGTT---AC-----------AGTTTTCCC------------------------------------------------------------AGCAA-T---------TTCATGATC-------AATC------CATTTTTGTCAACAATAACAACAACAA------G---------------G--------------------------------------------------------------------------------------------------------------TGAT------------GAG------------G----TAGTGCTGCCAATTCGTAA---TAATATCGCACCTGGT----CGGCCAGAGTTGCCAA-TTG-TTT--GC-----ACTCACGACTG------------CCCG-AG-T--AACTATTGCCATTTCACTCGCTCGTGCSizeHit CountTotal NormTotal
No Reads
droEle1
AGCACGTGAACAAGCGAAATTTTAATGAAAGCAGCGAGCAAATAAAACAGGTGAGTTGG----AGT----------TTTTG-C---------------------------------------------------------C--CCAGTAAA----------TTGATGAAC-------AATT------CGTTTTTGTCAACCATAACAACAACAA------G---------------G--------------------------------------------------------------------------------------------------------------TGAC------------AGGG-----------G----TAGTGTTGCCAAACTGAAA---ACATATCGCACCTGGC----AAGCCAGAGTTGCCAA-TTG-TAC--GC-----ACTCACGACTG------------GCCC-CGAG--CACTAGTGCCATTTCACTCACTCGTGCSizeHit CountTotal NormTotal
No Reads
droRho1
AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAACAAATAAAGCAGGTGAGTTGG----AGT----------TTTTG-C---------------------------------------------------------C--CCAGTAAA----------TTCATGAAC-------ATTT------CGTTTTTGTCAACAATAACAACTACAA------G---------------G--------------------------------------------------------------------------------------------------------------TGAC------------AGGG-----------G----TAGTGTTGGAAAACCGTAA---ACATATCGCACCTGGC----CAGCCAGAGTTGCCAA-TTG-TTT--GC-----ACTCACGACTG------------GCCC-CGAA--CACTATTGCCATTTCACTCGCTCGTGCSizeHit CountTotal NormTotal
No Reads
droBia1
AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAAAGCAGGTGAGTGCTT--CGA-----------AATAACTTT-----TCTTTTT-------------------------------------------C--CCACTGAAA----AAATGTTCATGAGC-------AGTC------CATTTTTGTCAACAATAACAACAATAA------G---------------G--------------------------------------------------------------------------------------------------------------GGGC------------AGGG---------G-C----TAGTGTTGCCAAATCGCCG---ACATATCGCACCTGGTTGCCCGGCCGGGGTTGCCAA-TTGTTTTGCGC-----ACTCACGACTG------------GCCG-AGGG--AACTATTGCCATTTCACTCGCTCGTGCSizeHit CountTotal NormTotal
No Reads
droTak1
AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAAAGCAGGTGAGTTGTATT-GCTAAATCGA---ACTTTTCC--------------------------------------------------------C--CCACTAGAT---------TTCATGAAC-------AATC------CGTTTTTGTCAACAATAACAACAACAA------G---------------G--------------------------------------------------------------------------------------------------------------TGAC------------AGGG-----------C----TAGTGTTGCCAATCCGAAA---ACATATCGCACCTGGT------GCCAGAGTTGCCAA-TTG-TTC--GC-----ACTCACGACTG------------GCCG-AGAG--CACTATTGCCATTTCACTCGCTCGTGCSizeHit CountTotal NormTotal
No Reads
droEug1
AGCACGTGAATAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAAAGCAGGTGAGTTTC----CA-----------AA-TAT----------TTT------------------------------------------------------------C-------CATGAAC-------ATTT-----TCATTTTTGTCAACAATAACAACAACAA------T---------------G--------------------------------------------------------------------------------------------------------------GGAC------------TGGGAGCCAAAATG-A----TAGTGTTGCCAAATTATAA---ACATATCGGACCTGGGTTCATAACCAGAGTTGCCAA-TTG-TTC--GCAATTCACTCACGACTTCG----------GAGA-AGAGCACACTATTGCCATTTCACTCGCTCGTGCSizeHit CountTotal NormTotal
No Reads
dm3
AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAAATCAGGTAGGTGCC----CA-----------AGTTATTCTACCAAAGTTT------------------------------------------------------------C-------CATGAACCATTTCCAATT------C-ATTTTGTCAACAATAACAACAACATTTTGTAG---------------G--------------------------------------------------------------------------------------------------------------GGGC------------GGGG---------GTT----TAGTGTTGCCAAACCGACA---ACATATCGCACCTGGC----CAACCAGAGTTGCCAA-TTG-TTC--GC-----ACTCACGAATGG-----------------------GCTATTGCCATTTCACTCGCTCGTGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................TAATGAGAGCAGCGAGCAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2017.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AATGAGAGCAGCGAGCAAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001000000000000000000000000000000000000
...........AAGCGAAATTTTAATGAGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000100000000000000000000000100000000000000000000000000000000000000000000000010
.........................TGAGAGCAGCGAGCAAATAAATCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AGAGCAGCGAGCAAATAAATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100020000000000000000010000000000000000000000000000000000
.................AATTTTAATGAGAGCAGCGAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................TTTTAATGAGAGCAGCGAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000
...............GAAATTTTAATGAGAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAGTTGCCAA-TTG-TTC--GC-----.............................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................A-----------AGTTATTCTACCAAAGTTT------------------------------------------------------------C-------....................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TTAATGAGAGCAGCGAGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000100000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TTC--GC-----ACTCACGAATGG-----------------------GCT.......................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
...................TTTTAATGAGAGCAGCGAGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................ATTTTAATGAGAGCAGCGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000100
................AAATTTTAATGAGAGCAGCGAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.......................AATGAGAGCAGCGAGCAAATAAATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCATTTCACTCGCTCGTGC2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAATGG-----------------------GCTATTGCCATTTCACTCGCT.....2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................AATTTTAATGAGAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..................ATTTTAATGAGAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GAAATTTTAATGAGAGCAGCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................GCAGCGAGCAAATAAATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GAGAGCAGCGAGCAAATAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................TTGTCAACAATAACAACAAC...................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........AACAAGCGAAATTTTAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..........CAAGCGAAATTTTAATGATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TGAACAAGCGAAATTTTAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
...........................................................................................................................................................................................................AACAACAACATTTTGTAG---------------G--------------------------------------------------------------------------------------------------------------G...........................................................................................................................................................................2011.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................CAACAACATTTTGTAG---------------G--------------------------------------------------------------------------------------------------------------GG..........................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
..................ATTTTAATGAGAGCAGCGAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................TAATGAGAGCAGCGAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................GGGG---------GTT----TAGTGTTGCCAAACCGAC......................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
........................ATGAGAGCAGCGAGCAAATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TTG-TTC--GC-----ACTCACGAATGG-----------------------GCTA......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................GCAGCGAGCAAATAAATCAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................AATTTTAATGAGAGCAGCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
........................ATGAGAGCAGCGAGCAAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
............AGCGAAATTTTAATGAGAGCAGCGAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................CGAGCAAATAAATCAGGTAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................G---------GTT----TAGTGTTGCCAAACCGAC......................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC-----ACTCACGAATGG-----------------------GCTATTG...................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................................CAAATAAATCAGGTAGGTGCT----........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................ATTTTAATGAGAGCAGCGAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCACCTGGC----CAACCAGA......................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................AGCAGCGAGCAAATAAATCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.................................GCGAGCAAATAAATCAGGTAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCAA-TTG-TTC--GC-----ACTCACTT.....................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................GCAAATAAATCAGGTAGGTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAGAGTTGCCAA-TTG-TTC--G...................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................AATGAGAGCAGCGAGCAAATAAATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................GC----CAACCAGAGTTGCCAA-TTG-T........................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CAAACCGACA---ACATATCGCAC.......................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GAAATTTTAATGAGAGCAGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................AATGAGAGCAGCGAGCAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................ATTTTAATGAGAGCAGCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AGAGCAGCGAGCAAATAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........AACAAGCGAAATTTTAATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................AATTTTAATGAGAGCAGCGAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...ACGTGAACAAGCGAAATTTTAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AGCGAAATTTTAATGAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................TTTAATGAGAGCAGCGAGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................AAATTTTAATGAGAGCAGCGAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................ATGAGAGCAGCGAGCAAATAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TACCAAAGTTT------------------------------------------------------------C-------CATGAACC............................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GCGAAATTTTAATGAGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.............GCGAAATTTTAATGAGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................TTTAATGAGAGCAGCGAGCAAATAAATCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...............................CAGCGAGCAAATAAATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAACTCAGGTAGGTGCC----CC--------CCAAGTTATTCTACCAAAGTTT------------------------------------------------------------C-------CATGAACCATTTCCAATT------C-ATTTTGTCAACAATAACAACAACATTTTGAAG---------------G--------------------------------------------------------------------------------------------------------------GGTT------------GGGG-G-------GTT----TAGTGTTGCCAAACCGACA---ACATATCGCACCTGGC----CAACCAGAGTTGCCAA-TTG-TTC--GC-----ACTCACGAATGG-----------------------GCTATTGCCATTTCACTCGCTCGTGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......TGAACAAGCGAAATTTTAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
..CACGTGAACAAGCGAAATTTTAATGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
................................................AGGTAGGTGCC----CC--------CCAAGTTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
....................................................................................TACCAAAGTTT------------------------------------------------------------C-------CATGA...............................................................................................................................................................................................................................................................................................................................................................1711.00100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................................................CA---ACATATCGCACCTGGC----..............................................................................................1811.00100100000000000000
droSec2
AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAACTCAGGTAGGTGCC----CC--------CCAAGTTATTCTACCAAAGTTT------------------------------------------------------------C-------CATGAACCTTTTCCAATT------C-ATTTTGTCAACAATAACAACAAAATTTTGAAG---------------G-------------G------------------------------------------------------------------------------------------------GGGT------------GGGG-G-------GTT----TAGTGTTGCCAAACCGACA---ACATATCGCACCTGGC----CAACCAGAGTTGCCAA-TTG-TTC--GC-----ACTCACGAATGG-----------------------GCTATTGCCATTTCACTCGCTCGTGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................ATTTTAATGAGAGCAGCGAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
.................AATTTTAATGAGAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.....................TTAATGAGAGCAGCGAGCAAATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001
..................ATTTTAATGAGAGCAGCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
......................................CAAATAACTCAGGTAGGTGCC----........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
..CACGTGAACAAGCGAAATTTTAATGAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000
droYak3
AGCACGTGAGCAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAAAGCAGGTGGGTGCC----CA-----------ATTTATTCTACT-ATGTTT------------------------------------------------------------C-------CACGAACCATTTCCAATC------C-ATTTTGTCAACAATAACAACAACTA------G---------------G--------------------------------------------------------------------------------------------------------------TGGT------------GGGG---------G-T----TAGAGTTGCCAAACCGAAA---ACATATCGCACCTGG--------CCAGAGTTGCCAA-TTG-TTC--GC-----ACTCACGAGTTGGCTA-----TTGCCG-AGAG--CACTATTGCCATTTCACTCGCTCGTGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................GAGAGCAGCGAGCAAATAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..............................................................................................T------------------------------------------------------------C-------CACGAACCATTTCCAATC------C-ATTTTGTC..................................................................................................................................................................................................................................................................................................................................2911.00101000000000
.............GCGAAATTTTAATGAGAGCAGCGAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
..................ATTTTAATGAGAGCAGCGAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
....................TTTAATGAGAGCAGCGAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.................AATTTTAATGAGAGCAGCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
........................ATGAGAGCAGCGAGCAAATAAAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
............................................................................................................................................................................................................................................................................................................................................................GGT------------GGGG---------G-T----TAGAGTTGC...............................................................................................................................1811.00101000000000
.......................AATGAGAGCAGCGAGCAAATAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
droEre2
AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAACAAATAAAGCAGGTGGGTGCC----CC----------AAGTTATTCTACTAACGTTT------------------------------------------------------------C-------CATGAACCATTTTCAATT------T-ATTTTGTCAACAATAACAACAACAA------G---------------G--------------------------------------------------------------------------------------------------------------TGGT------------GGGG---------G-G----TAGTGTTGCCAAATCGAAA---ACATATCGCACCTGGC----CAACCAGAGTTGCCAA-TTG-TTC--GC-----ACTCACGAGTTGGCTAGAGCATTGCCG-AGAG--CACTATTGCCATTTCACTCGCTCGTGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................AATTTTAATGAGAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
...........AAGCGAAATTTTAATGAGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
...............GAAATTTTAATGAGAGCAGCGAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
.................AATTTTAATGAGAGCAGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
...................TTTTAATGAGAGCAGCGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
.................AATTTTAATGAGAGCAGCGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
..................ATTTTAATGAGAGCAGCGAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
.......GAACAAGCGAAATTTTAATGAGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
....................................AACAAATAAAGCAGGTGGGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
.........ACAAGCGAAATTTTAATGAGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010

Generated: 05/16/2015 at 08:26 PM