ID:

dvi_7021

 Coordinate:

scaffold_12875:14963025-14963175 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dvir_GLEANR_5665:2]; CDS [Dvir\GJ20215-cds]; intron [Dvir\GJ20215-in]

Repeatable elements

NameClassFamilyStrand
(TA)nSimple_repeatSimple_repeat+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTCGTCGTCTCATGGCGCACATGTGCTTCAAATTAAAATGTCTGGCTTTCATCTAAGAGCAATAAATAACCATAATAAATCGAAACATACATTGAAATACGAGCCTATATATACTTATATATATATACATATATATCTATATAGATGTACTACCCATACATGTGTCTAGCTGATTTTTAACGCTTTTGTTTCGTCTTGCAGCTAAACGATTTGTATCCGATCGCCCGTCTGACCCAGAAATTGGACGTGCT
**************************************************..............................(((((((....((((((....(((...((((((..(((((((......)))))))..)))))).(((((.......))))).......)))...))))))......)))))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR1106729
mixed whole adult body
 V047
embryo
 M047
female body
 M028
head
 M061
embryo
 SRR060659
Argentina_testes_total
 SRR060679
140x9_testes_total
....................................................................................................................................................................................................................................CTGACCCAGAAATTGGACG.... 19 0 1 1.00 1 0 0 1 0 0 0 0
..........................................................................................................................................................................................................TAAACGATTTGTATCCGATCGCCCGTCTGACCCAGAA............ 37 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................GTCTGACCCAGAAATTGGACGT... 22 0 1 1.00 1 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................GATCGCCCGTCTGACCCAGAA............ 21 0 1 1.00 1 0 0 0 0 1 0 0
...............................................................................................................................................................................................................GATTTGTATCCGATCGCCCGTCTGACCCAGAAATTGGA...... 38 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................CTGACCCAGAAATTGGACGT... 20 0 1 1.00 1 0 0 0 0 0 1 0
......................................................................................................................................................................................................CGCCTAAACGATTTGTATC.................................. 19 2 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................................AAACGATTTGTATCCGAT.............................. 18 0 1 1.00 1 0 0 0 0 0 0 1
........................................................................................................................................CTATCTGGATGTACTACCCAT.............................................................................................. 21 2 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................CGATCGCCCGTCTGACCC................ 18 0 1 1.00 1 0 0 0 1 0 0 0
............................................................................................................................................................................................................................TCGCCCGTCTGACCCAGAAATTGGACG.... 27 0 1 1.00 1 0 0 0 1 0 0 0
................................................................................................................................................................................................................ATTTGTATCCGATCGCCCGTCTGACCCAGAA............ 31 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................TAAATCTATACATACATTGAAGT......................................................................................................................................................... 23 3 3 0.33 1 0 1 0 0 0 0 0
....................................................................................................................................................ACAACTCATACATGCGTCTA................................................................................... 20 3 7 0.14 1 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................GACGATCGCCGGTCTGACC................. 19 3 13 0.08 1 0 0 0 1 0 0 0
........................................................................................................................................CTATATAGCCGTACTACC................................................................................................. 18 2 17 0.06 1 0 0 0 1 0 0 0

Anti-sense strand reads

CAGCAGCAGAGTACCGCGTGTACACGAAGTTTAATTTTACAGACCGAAAGTAGATTCTCGTTATTTATTGGTATTATTTAGCTTTGTATGTAACTTTATGCTCGGATATATATGAATATATATATATGTATATATAGATATATCTACATGATGGGTATGTACACAGATCGACTAAAAATTGCGAAAACAAAGCAGAACGTCGATTTGCTAAACATAGGCTAGCGGGCAGACTGGGTCTTTAACCTGCACGA
**************************************************..............................(((((((....((((((....(((...((((((..(((((((......)))))))..)))))).(((((.......))))).......)))...))))))......)))))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060682
9x140_0-2h_embryos_total
 SRR060658
140_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060688
160_ovaries_total
 V116
male body		 M047
female body
 M027
male body		 SRR060664
9_males_carcasses_total
 SRR060662
9x160_0-2h_embryos_total
...................................................................................................................................................................................TGCGAAAACAAAGCAGAACGTCGAT............................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................GGGTATGTACACAGATCGACTAAAAATT....................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................AGTGTAGCGGGTAGACTGGGTC.............. 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TAGCGGGTAGACTGGGTCTA............ 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................AGATTCTCGTTATTTATTGGTATTATT............................................................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................CGGGCAGTCTGGGGCCTTA.......... 19 3 6 0.17 1 0 0 0 0 1 0 0 0 0
..............CGCTTGTACATGAAGTTTATT........................................................................................................................................................................................................................ 21 3 8 0.13 1 0 0 0 0 0 1 0 0 0
.......................................CAGCCCGAAAGCAGAGTCT................................................................................................................................................................................................. 19 3 12 0.08 1 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................GATCGACTATAAATTGGCAA.................................................................. 20 3 15 0.07 1 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................................................AGACTGGGTCTACAAGCTG..... 19 3 18 0.06 1 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:14962975-14963225 - dvi_7021 GTCGTCGTCTCATGGCGCACATGTGCTTC----------------------------------------------AAATTAAAATGTCTGGCTTTCATCTAAGAGCAATAAATAACCATAAT-AAATCGAAACATACATTGAA--------------ATACGAGCCTATATATACT-----------------------TATATAT--ATATACATATATATCTAT-------------------------ATAGATGTACTACCCAT-A-----------C-----------ATGTGTCTA----------------GC---TGATTTTTAACGCTT--------T-TGTTTC--------------------------------------------------GTC-------TTGCAGCTAAACGATTTGTATCCGATCGCCCGTCTGACCCAGAAATTGG---ACGTGCT
droMoj3 scaffold_6496:8878315-8878535 + GTTGCTGTCGGCTCGCGAACATGTGCTT----------------------------------------------CAAATTAAAATGTCTAGCTTTCATCTAAGAGCAATAAATAACCGTAAT-AAATCCAAACATGTATATATATG------------TGTGAATGTATA--TATT------------ATCT------------AT--ATATA----------------------------------------------------------------------------------------------------------------TATATAAGAGAGTTG---TGTAAA------AGTGCTCTTCCACTTATAACTCGAGATCTGCTGGACCAATTTTCATG--GTT-------TTTGATTTGTTGGATTTGTCTCCG-----------------------------------
droGri2 scaffold_15245:14985346-14985563 - GAAA-A----------ACACATGTGCTGC----------------------------------------------AAATTAAAATGTCTGGCTTTCATCTAAGAGCCATAAATAACGATAAT-AAAT--------------CTAGA-CATACAGAACACA----CATATATATACT----------------------------ATATA--TACATCAACTATTAC--------------------------------------GCTT-A-----------T-----------ATGTGAATT----------------GCTAGTGAATTTTAACGATTTG---TTTCGTC-----------------------------------------------------------------TACAGCTGAACGATTTATATCCGATCGCCCGTTTGACTCAGAAATTGG---ACGTGCT
droWil2 scf2_1100000004954:2871380-2871512 - AT-----------------------------------------------------------------------------------------------------AGTCATAAATTATCGTATA-T---------------ATATATA-TGTAGATT----------------------------------------------------------------------------------------------------------------------------------------------------------------CCATAGTGTAGATTTTAACGATTTG---TTTTGTCTACT----------------------------------------------------T-------TTGCAGCTGAACGATTTATATCCCATTGCCCGTCTAACACAGAAAATGGAGGACGTGCT
dp5 3:7738376-7738637 + GCAGTCGCCGCC----ACACATGTGCTAC---AAA-----------------------------ATATACACAACAAATTAAAATGC----CTTTCATCTAAGAGCCATAAATTATCATGTT-AG----------------CTATA-CGTACAGTCCGTACGGTCGTTTGTTTTCT----------------------------ATTTTTCCACGTCCACGTCCAC--------------------------------------GTCC-C----------------------CATACGAACCGAACC---------C--ACAACGGATCTAAACGATTTG---TTTTGTCTGCTT-----------------------------------------C---------TCACACACTTGCAGCTGAACGACTTGTATCCCATCGCTCGTCTGACACAGAAAATGGAGGACGTGCT
droPer2 scaffold_4:1648970-1649222 + GCC-------------ACACATGTGCTAC---AAA-----------------------------ATATACACAACAAATTAAAATGC----CTTTCATCTAAGAGCCATAAATTATCATGTT-AG----------------CTATA-CGTACAGTCCGTACGGTCGTTTGTTTTCT----------------------------ATTTTTCCACGTCCACGTCCAC--------------------------------------GTCC-C----------------------CATACGAACCGAACC---------C--ACAACGGATCTAAACGATTTG---TTTTGTCTGCTT-----------------------------------------C---------TCACACACTTGCAGCTGAACGACTTGTATCCCATCGCTCGTCTGACACAGAAAATGGAGGACGTGCT
droAna3 scaffold_13266:14357350-14357583 - AC--------------ACATGTGTGCTATTC-GAAAAGAAAAACAATAACAAATATATCAACGTATATACAGAACAAATTAAAATGC----CTTTCATCTAAGAGCCATAAATAATAATGTT-TG----------------CTCTA-TGTC--G----TATGTAGGTT-------TTTTCCCCC----AA-----------------------CCTTA---------------GCACCC-----------------------------------------------------------------------------------------ATTAACGATTTTATATTTTGTATTTC---------------------------------------------------CT-------TTGCAGCTCAACGACCTATATCCGATCGCCCGACTGACACAGAAAATGGGAGAAGCTTT
droBip1 scf7180000396428:471511-471696 + GT--------------------------------------------------------------ATATACACAACAAATTAAAATGC----CTTTCATCTAAGAGCCATAAATAATAATGTT-TG----------------CTCCA-CGTC--G----TATGTAGGTTT------TTTTCCCCA----A------------------------CCTTAA------T---------G-----------------------------CC------------------------------------------------------------CATTAACGATTTC---TA---TTTGGTA-----------------------------------------T-----TTCCT-------TTGCAGCTCAACGACCTATATCCGATCGCCCGACTGACACAGAAAATGGGAGAGGCTCT
droKik1 scf7180000302277:1168053-1168305 - GGCATCGTGTACATGTGTACATGAGCTACACAAAA-----------------------------ATATACAAAACAAATTAAAATGC----CTTTCATCTAAGAGCCATAAATAATAATGTTTTT----------------CTATAGCGTC--G----TA--------CG----CTTTTCCCGC----A------------------------CC-CAA------GCCCCTCAGCTCCCA-----------------------------GTCCC------AGTCCCAGTCCCGGT----------------------CAGAGTCACTACTTAACGATTTG---TTTTGTCTGCC---------------------------------------------------TT-------TCACAGCTAAACGACTTATATCCGATTGCCCGGCTGACACAGAAAATGGAGGGATCGCT
droFic1 scf7180000453858:1774304-1774509 + GTCGCT----------CTACATGTGCTAC---AAA-----------------------------ATATACAAAACAATTTAAAATGC----CTTTCATCTAAGAGCCATAAATAATACTGTT-TT----------------CTATA-CGCG--G----TT--------CG----TCTTTCCCCC----A------------------------CCTCAG------AG--------------------------------------CC--------------------------------------------------------TCAATCTAAACGATTTG---TTTTGTCTGCTC-----------------------------------------C-------------GCATTTGCAGCTGAACGACTTATATCCGATTGCCCGGCTGACGCAGAAAATGGAGGACGCCCT
droEle1 scf7180000491214:5026248-5026491 - GC-GTCGC---------TACATGTGCTAC---AAA-----------------------------ATATACAAAACAAATTAAAACGC----CTTTCATCTAAGAGCCATAAATAATAATGTT-TT----------------CTATA-TGCCT-G-CCGCT--------CG----TCTTTCCTCC----A------------------------CCTCAA------AC--------------------------------------TC-ATGCCCAGCCCCAGCCAC------AATAATA----------------ATAATAATAATAACTGAACGATTTG---TTTTGTCTGCCG-----------------------------------------G------------GGCATTTGCAGCTGAACGACTTATATCCGATTTCCCGGCTGACACAGAAAATGGAGGACGCTTT
droRho1 scf7180000777386:81288-81513 + GC-GTCGC---------TACATGTGCTAC---AAA-----------------------------ATATACAAAACAAATTAAAATGC----CTTTCATCTAAGAGCCATAAATAATAATGTT-TT----------------CTATA-CGCC--G----CA--------CG----TCTTTCCTCC----A------------------------CCTCAA------AC--------------------------------------CC-AC------------------------------------CCAGAAAAAATAATAATAATGTCTGAACGATTTG---TTTTGTCTGCTC-----------------------------------------C------------CGCATTTGCAGCTGAACGACTTATATCCGATTGCCCGGCTGACACAGAAAATGGAGGACGCCCT
droBia1 scf7180000302143:585335-585570 + ATCGTC----------ATCCATGTGCTAC---AAA-----------------------------ATATACAAAACAAATTAAAACGC----CTTTCATCTAAGAGCCATAAATAATAATGTT-TT----------------CTATA-CGCC--G-CCGCA--------CG----T----CCCCC----A------------------------CCTCCACCTCCAC--------------------------------------CTCC-GGCCC------AG----------------ACCCAAA---------CCCAGCCAAAGTATCTAAGCGATTTG---TTTTGTCTGCTC-----------------------------------------C------------GGCATTTGCAGCTGAACGACTTGTATCCGATTGCCCGGCTGACACAGAAAATGGAGGACGCCCT
droTak1 scf7180000415666:102619-102852 + ATCGTC----------ATCCATGTGCTAC---AAA-----------------------------ATATACAAAACAAATTAAGATGC----CTTTCATCTAAGAGCCATAAATAATAATGTT-TT----------------CTAAA-CGCC--G-CCGTT--------CG----TCTTTCCTCC----A------------------------CCTCAA------AC--------------------------------------CC-GAACCC------AA----------------ACCCAAA---------CCCAGATATAATATCTAAGCGATTTG---TTTTGTCTGCTC-----------------------------------------C------------GGCATTTGCAGCTGAACGACTTATATCCGATTGCCCGGCTGACACAGAAAATGGAGGACGCCCT
droEug1 scf7180000409464:410741-410972 + AT----------------CCATGTGCTAC---AAA-----------------------------ATATACAAAACAAATTAAAATGC----CTTTCATCTAAGAGCCATAAATAATAATGTT-TT----------------CTATA-CGCC--G----TTCGCCGGT-TG----CCGTTCCTCC----A------------------------CCTCCACCTCTAC--------------------------------------CTTC-A-----------C------------------CC-A-------AAATCTACCCATAATATCTGAACGATTTG---TTTTGTCTGCTC-----------------------------------------C------------CGCATTTGCAGCTGAACGACTTATATCCGATTGCCCGGCTAACACAGAAAATGGAGGACGCCCT
dm3 chr2R:20043148-20043379 + -------------------CATGAGCTGC---GAA-----------------------------ATATACAAAACAAATTAAGCTGC----CTTTCATCTAAGAGCCATAAATAATAATGTT-TC----------------CTATG-CGCC--G----CC--------CG----ACTTTCCTCCGACCGCCCATCCATAC---------------------------ATCTAAGCATCCAACCATCCCTCCA--------------------------------------------------------------TCCATCGAAAGTATCTGAACGATTTG---TTTT-TCTGGC--------------------------------------------------GCT-------TTGCAGCTGAACGACTTGTATCCGATCGCCCGGCTGACACAGAAAATGGAGGACGCATT
droSim2 2r:20536049-20536276 + dsi_25606 -------------------CATGAGCTGC---GAA-----------------------------ATATACAAAACAAATTAAGCTGC----CTTTCATCTAAGAGCCATAAATAATAATGTT-TC----------------CTATG-CGCC--G----CC--------CG----ACTTTCCCCC----GCCCATCCACAC---------------------------ATCTAAGCACCCAACCATTCCTCCA--------------------------------------------------------------TCCATCGAAAGTTTCTGAACGATTTG---TTTT-TCTGGC--------------------------------------------------GCT-------TTGCAGCTGAACGAATTGTATCCGATCGCCCGGCTGACACAGAAAATGGAGGACGCATT
droSec2 scaffold_5:290643-290870 + -------------------CATGAGCTGC---GAA-----------------------------ATATACAAAACAAATTAAGCTGT----CTTTCATCTAAGAGCCATAAATAATAATGTT-TC----------------CTATG-CGCC--G----CC--------CG----ACTTTCCCCC----GCCCATCCATAC---------------------------ATCTAAGCATCCAACCATTCCTCCA--------------------------------------------------------------TCCATCGAAAGTATCTGAACGGTTTG---TTTT-TCTGGC--------------------------------------------------GCT-------TTGCAGCTGAACGAATTGTATCCGATCGCCCGGCTGACACAGAAAATGGAGGACGCATT
droYak3 2R:20015095-20015319 + ATCGTC----------ATCCATGAGCTAC---GAA-----------------------------ATATTCAAAACAAATTAAGCTGC----CTTTCATCTAAGAGCCATAAATAATAATGTT-TT----------------CTATG-CACC--G----CC--------CC----TCTATCCCCC----A------------------------TCCCAT------AC--------------------------------------TC-AC---------TATTCA-----------CTATCC-A-----------ATATCCAAAGTATCTGAACGATTTG---TT-TGTGTGCC--------------------------------------------------GTT-------TCGCAGCTGAACGACTTGTATCCGATTGCCCGGCTGACGCAGAAAATGGAGGACGCCCT
droEre2 scaffold_4845:21413669-21413871 + AT----------------CCATGAGCTAC---AAA-----------------------------ATATACAAAACAAATTA--TTGC----CTTTCATCTAAGAGCCATAAATTATAATGTG-TT----------------CTATG-CACC--G----CC--------CG----ACTTTCCCCC----A------------------------TCCC-------------------------------------------------------------------------------CCATCC------------GCCATCCAAAGTATCTGAACGATTTG---CT-TGTCTGCC--------------------------------------------------GTT-------TCGCAGCTGAACGACTTGTATCCGATTGCCCGGCTGACGCAGAAAATGGAGGACGCCCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GTCGTCGTCTCATGGCGCACATGTGCTTC----------------------------------------------AAATTAAAATGTCTGGCTTTCATCTAAGAGCAATAAATAACCATAAT-AAATCGAAACATACATTGAA--------------ATACGAGCCTATATATACT-----------------------TATATAT--ATATACATATATATCTAT-------------------------ATAGATGTACTACCCAT-A-----------C-----------ATGTGTCTA----------------GC---TGATTTTTAACGCTT--------T-TGTTTC--------------------------------------------------GTC-------TTGCAGCTAAACGATTTGTATCCGATCGCCCGTCTGACCCAGAAATTGG---ACGTGCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGACCCAGAAATTGG---ACG....1911.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACGATTTGTATCCGATCGCCCGTCTGACCCAGAA...............3711.001000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGACCCAGAAATTGG---ACGT...2211.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGCCCGTCTGACCCAGAA...............2111.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGTATCCGATCGCCCGTCTGACCCAGAAATTGG---A......3811.001000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGACCCAGAAATTGG---ACGT...2011.001000000000100000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGATTTGTATCCGAT.................................1811.001000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCGCCCGTCTGACCC...................1811.001010000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCCCGTCTGACCCAGAAATTGG---ACG....2711.001010000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTATCCGATCGCCCGTCTGACCCAGAA...............3111.001000000000000000000000000000000000000000000000000000000000100000
droMoj3
GTTGCTGTCGGCTCGCGAACATGTGCTT----------------------------------------------CAAATTAAAATGTCTAGCTTTCATCTAAGAGCAATAAATAACCGTAAT-AAATCCAAACATGTATATATATG------------TGTGAATGTATA--TATT------------ATCT------------AT--ATATA----------------------------------------------------------------------------------------------------------------TATATAAGAGAGTTG---TGTAAA------AGTGCTCTTCCACTTATAACTCGAGATCTGCTGGACCAATTTTCATG--GTT-------TTTGATTTGTTGGATTTGTCTCCG-----------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................TAACTCGAGATCTGCTGGACCAATT.............................................................................25204.80960000960
...................................................................................................................................................................................................................................................................................................................................................................................TAACTCGAGATCTGCTGGACCA................................................................................22200.459000090
........................................................................................................................................................................................................................................................................................................................................................................................CGAGATCTGCTGGACCAATTT............................................................................21200.357700000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATTTGTTGGATTTGTCTC.....................................22200.204310000
................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTGTTGGATTTGTCT......................................19200.102200000
.......................................................................................................................................................................................................................................................................................................................................................................................TCGAGATCTGCTGGACCAATTT............................................................................22200.102200000
...........................................................................................................................................................................................................................................................................................................................................................................TCCACTTATAACTCGAGATCTGC.......................................................................................23200.051000010
...................................................................................................................................................................................................................................................................................................................................................................................TAACTCGAGATCTGCTGGACCAATTTTC..........................................................................28200.051000010
...................................................................................................................................................................................................................................................................................................................................................................................TAACTCGAGATCTGCTGGA...................................................................................19200.051000010
..............................................................................................................................................................................................................................................................................................................................................................................ACTTATAACTCGAGATCTGCTGGACC.................................................................................26200.051100000
.....................................................................................................................................................................................................................................................................................................................................................................................ACTCGAGATCTGCTGGACCAA...............................................................................21200.051000010
..........................................................................................................................................................................................................................................................................................................................................AAGAGAGTTG---TGTAAA------AGT...................................................................................................................19200.051100000
................................................................................................................................................................................................................................................................................................................................................................................TTATAACTCGAGATCTGCTGGACC.................................................................................24200.051000010
............................................................................................................................................................................................................................................................................................................................................................................................ATCTGCTGGACCAATTTTCATG--G....................................................................23200.051100000
......................................................................................................................................................................................................................................................................................................................................................................................CTCGAGATCTGCTGGACCAATT.............................................................................22200.051000010
...................................................................................................................................................................................................................................................................................................................................................................................TAACTCGAGATCTGCTGGACCAATTTT...........................................................................27200.051100000
droGri2
GAAA-A----------ACACATGTGCTGC----------------------------------------------AAATTAAAATGTCTGGCTTTCATCTAAGAGCCATAAATAACGATAAT-AAAT--------------CTAGA-CATACAGAACACA----CATATATATACT----------------------------ATATA--TACATCAACTATTAC--------------------------------------GCTT-A-----------T-----------ATGTGAATT----------------GCTAGTGAATTTTAACGATTTG---TTTCGTC-----------------------------------------------------------------TACAGCTGAACGATTTATATCCGATCGCCCGTTTGACTCAGAAATTGG---ACGTGCTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AT-----------------------------------------------------------------------------------------------------AGTCATAAATTATCGTATA-T---------------ATATATA-TGTAGATT----------------------------------------------------------------------------------------------------------------------------------------------------------------CCATAGTGTAGATTTTAACGATTTG---TTTTGTCTACT----------------------------------------------------T-------TTGCAGCTGAACGATTTATATCCCATTGCCCGTCTAACACAGAAAATGGAGGACGTGCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACACAGAAAATGGAGGACGTGC.2517.00700430
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTATATCCCATTGCCCGT..........................2113.00300120
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATATCCCATTGCCCGT..........................2011.00101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACACAGAAAATGGAGGAC.....2111.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACGATTTATATCCCATTGCCCGT..........................2711.00110000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACACAGAAAATGGAG........1811.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACGATTTATATCCCATTGCC.............................2411.00110000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGAAAATGGAGGACGTGC.2211.00100001
dp5
GCAGTCGCCGCC----ACACATGTGCTAC---AAA-----------------------------ATATACACAACAAATTAAAATGC----CTTTCATCTAAGAGCCATAAATTATCATGTT-AG----------------CTATA-CGTACAGTCCGTACGGTCGTTTGTTTTCT----------------------------ATTTTTCCACGTCCACGTCCAC--------------------------------------GTCC-C----------------------CATACGAACCGAACC---------C--ACAACGGATCTAAACGATTTG---TTTTGTCTGCTT-----------------------------------------C---------TCACACACTTGCAGCTGAACGACTTGTATCCCATCGCTCGTCTGACACAGAAAATGGAGGACGTGCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGTATCCCATCGCTCGT..........................2113.0030200100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGACACAGAAAATGGAGGACGTG..2413.0030200001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGACACAGAAAATGGAGGAC.....2113.0030300000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCATCGCTCGTCTGACACAGAAA..............2611.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGACTTGTATCCCATCGCT.............................2211.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCTGACACAGAAAATGGAGGA......2311.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGACACAGAAAATGGAGGACGTGC.2511.0010010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTATCCCATCGCTCGTCTGACAC...................2611.0010001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CGACTTGTATCCCATCGCTCGT..........................2211.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGTATCCCATCGCTCGTCTGACA....................2711.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGAAAATGGAGGACGT...2011.0010000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGACACAGAAAATGGAG........2011.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGACACAGAAAATGGAG........1811.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGTATCCCATCGCTCGTCT........................2311.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTCTGACACAGAAAATGGAGGAC.....2711.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGTATCCCATCGCTCGT..........................2011.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGACACAGAAAATGGA.........1911.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCATCGCTCGTCTGACACAG.................2111.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGACACAGAAAATGGAGGAC.....2311.0010100000000
droPer2
GCC-------------ACACATGTGCTAC---AAA-----------------------------ATATACACAACAAATTAAAATGC----CTTTCATCTAAGAGCCATAAATTATCATGTT-AG----------------CTATA-CGTACAGTCCGTACGGTCGTTTGTTTTCT----------------------------ATTTTTCCACGTCCACGTCCAC--------------------------------------GTCC-C----------------------CATACGAACCGAACC---------C--ACAACGGATCTAAACGATTTG---TTTTGTCTGCTT-----------------------------------------C---------TCACACACTTGCAGCTGAACGACTTGTATCCCATCGCTCGTCTGACACAGAAAATGGAGGACGTGCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCGCTCGTCTGACACAG.................2013.003300000
.....................................................................................................................................................................................................................................................................................................ATACGAACCGAACC---------C--ACAACGG...................................................................................................................................................2212.002200000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGTATCCCATCGCTCGT..........................2112.002101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCATCGCTCGTCTGACA....................2012.002200000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTATCCCATCGCTCGTCTGACACAGA................2812.002200000
........................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACTTGTATCCCATCGCC.............................2011.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCTCGTCTGACACAGAAAATGGAG........2711.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGACACAGAAAATGGAGGACGTG..2411.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGAAAATGGAGGACG....1811.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCATCGCTCGTCTGA......................1811.001100000
droAna3
AC--------------ACATGTGTGCTATTC-GAAAAGAAAAACAATAACAAATATATCAACGTATATACAGAACAAATTAAAATGC----CTTTCATCTAAGAGCCATAAATAATAATGTT-TG----------------CTCTA-TGTC--G----TATGTAGGTT-------TTTTCCCCC----AA-----------------------CCTTA---------------GCACCC-----------------------------------------------------------------------------------------ATTAACGATTTTATATTTTGTATTTC---------------------------------------------------CT-------TTGCAGCTCAACGACCTATATCCGATCGCCCGACTGACACAGAAAATGGGAGAAGCTTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTATATCCGATCGCCCGACT........................2314.004100030
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACAGAAAATGGGAGAAGCT..2213.003000030
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTATATCCGATCGCCC............................1912.002110000
......................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGACCTATATCCGATCGCCCGACT........................2712.002200000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGCCCGACTGACACAGAAA..............2211.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACTGACACAGAAAATGGGAGA......2311.001000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGAAAATGGGAGAAGCTTT2211.001000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CGACCTATATCCGATCGCCCGACTGAC.....................2711.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTATATCCGATCGCCCGACT........................2211.001010000
droBip1
GT--------------------------------------------------------------ATATACACAACAAATTAAAATGC----CTTTCATCTAAGAGCCATAAATAATAATGTT-TG----------------CTCCA-CGTC--G----TATGTAGGTTT------TTTTCCCCA----A------------------------CCTTAA------T---------G-----------------------------CC------------------------------------------------------------CATTAACGATTTC---TA---TTTGGTA-----------------------------------------T-----TTCCT-------TTGCAGCTCAACGACCTATATCCGATCGCCCGACTGACACAGAAAATGGGAGAGGCTCTSizeHit CountTotal NormTotal
No Reads
droKik1
GGCATCGTGTACATGTGTACATGAGCTACACAAAA-----------------------------ATATACAAAACAAATTAAAATGC----CTTTCATCTAAGAGCCATAAATAATAATGTTTTT----------------CTATAGCGTC--G----TA--------CG----CTTTTCCCGC----A------------------------CC-CAA------GCCCCTCAGCTCCCA-----------------------------GTCCC------AGTCCCAGTCCCGGT----------------------CAGAGTCACTACTTAACGATTTG---TTTTGTCTGCC---------------------------------------------------TT-------TCACAGCTAAACGACTTATATCCGATTGCCCGGCTGACACAGAAAATGGAGGGATCGCTSizeHit CountTotal NormTotal
No Reads
droFic1
GTCGCT----------CTACATGTGCTAC---AAA-----------------------------ATATACAAAACAATTTAAAATGC----CTTTCATCTAAGAGCCATAAATAATACTGTT-TT----------------CTATA-CGCG--G----TT--------CG----TCTTTCCCCC----A------------------------CCTCAG------AG--------------------------------------CC--------------------------------------------------------TCAATCTAAACGATTTG---TTTTGTCTGCTC-----------------------------------------C-------------GCATTTGCAGCTGAACGACTTATATCCGATTGCCCGGCTGACGCAGAAAATGGAGGACGCCCTSizeHit CountTotal NormTotal
No Reads
droEle1
GC-GTCGC---------TACATGTGCTAC---AAA-----------------------------ATATACAAAACAAATTAAAACGC----CTTTCATCTAAGAGCCATAAATAATAATGTT-TT----------------CTATA-TGCCT-G-CCGCT--------CG----TCTTTCCTCC----A------------------------CCTCAA------AC--------------------------------------TC-ATGCCCAGCCCCAGCCAC------AATAATA----------------ATAATAATAATAACTGAACGATTTG---TTTTGTCTGCCG-----------------------------------------G------------GGCATTTGCAGCTGAACGACTTATATCCGATTTCCCGGCTGACACAGAAAATGGAGGACGCTTTSizeHit CountTotal NormTotal
No Reads
droRho1
GC-GTCGC---------TACATGTGCTAC---AAA-----------------------------ATATACAAAACAAATTAAAATGC----CTTTCATCTAAGAGCCATAAATAATAATGTT-TT----------------CTATA-CGCC--G----CA--------CG----TCTTTCCTCC----A------------------------CCTCAA------AC--------------------------------------CC-AC------------------------------------CCAGAAAAAATAATAATAATGTCTGAACGATTTG---TTTTGTCTGCTC-----------------------------------------C------------CGCATTTGCAGCTGAACGACTTATATCCGATTGCCCGGCTGACACAGAAAATGGAGGACGCCCTSizeHit CountTotal NormTotal
No Reads
droBia1
ATCGTC----------ATCCATGTGCTAC---AAA-----------------------------ATATACAAAACAAATTAAAACGC----CTTTCATCTAAGAGCCATAAATAATAATGTT-TT----------------CTATA-CGCC--G-CCGCA--------CG----T----CCCCC----A------------------------CCTCCACCTCCAC--------------------------------------CTCC-GGCCC------AG----------------ACCCAAA---------CCCAGCCAAAGTATCTAAGCGATTTG---TTTTGTCTGCTC-----------------------------------------C------------GGCATTTGCAGCTGAACGACTTGTATCCGATTGCCCGGCTGACACAGAAAATGGAGGACGCCCTSizeHit CountTotal NormTotal
No Reads
droTak1
ATCGTC----------ATCCATGTGCTAC---AAA-----------------------------ATATACAAAACAAATTAAGATGC----CTTTCATCTAAGAGCCATAAATAATAATGTT-TT----------------CTAAA-CGCC--G-CCGTT--------CG----TCTTTCCTCC----A------------------------CCTCAA------AC--------------------------------------CC-GAACCC------AA----------------ACCCAAA---------CCCAGATATAATATCTAAGCGATTTG---TTTTGTCTGCTC-----------------------------------------C------------GGCATTTGCAGCTGAACGACTTATATCCGATTGCCCGGCTGACACAGAAAATGGAGGACGCCCTSizeHit CountTotal NormTotal
No Reads
droEug1
AT----------------CCATGTGCTAC---AAA-----------------------------ATATACAAAACAAATTAAAATGC----CTTTCATCTAAGAGCCATAAATAATAATGTT-TT----------------CTATA-CGCC--G----TTCGCCGGT-TG----CCGTTCCTCC----A------------------------CCTCCACCTCTAC--------------------------------------CTTC-A-----------C------------------CC-A-------AAATCTACCCATAATATCTGAACGATTTG---TTTTGTCTGCTC-----------------------------------------C------------CGCATTTGCAGCTGAACGACTTATATCCGATTGCCCGGCTAACACAGAAAATGGAGGACGCCCTSizeHit CountTotal NormTotal
No Reads
dm3
-------------------CATGAGCTGC---GAA-----------------------------ATATACAAAACAAATTAAGCTGC----CTTTCATCTAAGAGCCATAAATAATAATGTT-TC----------------CTATG-CGCC--G----CC--------CG----ACTTTCCTCCGACCGCCCATCCATAC---------------------------ATCTAAGCATCCAACCATCCCTCCA--------------------------------------------------------------TCCATCGAAAGTATCTGAACGATTTG---TTTT-TCTGGC--------------------------------------------------GCT-------TTGCAGCTGAACGACTTGTATCCGATCGCCCGGCTGACACAGAAAATGGAGGACGCATTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACACAGAAAATGGAGGACGCATT2514.0040000000000000000000001000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
......................GAGCTGC---GAA-----------------------------ATATACAA.................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGTATCCGATCGCCCGGCTGA......................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACGACTTGTATCCGATCGCCCGGCTG.......................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGACACAGAAAATGGAGGA......2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................ATCTAAGAGCCATAAATA.......................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCCGATCGCCCGGCT........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCGATCGCCCGGCTGACACAGAAA..............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACGACTTGTATCCGATCGCCCGGCT........................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCGATCGCCCGGCTGACACAGAAAAT............2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCCGATCGCCCGGCTGA......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCGGCTGACACAGAAAATGGAGGACGCA..3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCCGGCTGACACAGAA...............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................ACCATCCCTCCA--------------------------------------------------------------TCCATCGAAAGT...................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACGACTTGTATCCGATCGCCC............................2411.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCCGATCGCCCGGCTGAC.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................CTTTCATCTAAGAGCCATA...........................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCCCGGCTGACACAGAAAATGGA.........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGATCGCCCGGCTGACACAGAAAA.............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGATCGCCCGGCTGACACAGAAAAG............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGCTGACACAGAAAATGGAGGATC....2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGATCGCCCGGCTGACACAGA................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCTGACACAGAAAATGGAGGAC.....2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACAGAAAATGGAGGAC.....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGAAAATGGAGGAAC....1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGAAAATGGAGGAAC....18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000
droSim2
-------------------CATGAGCTGC---GAA-----------------------------ATATACAAAACAAATTAAGCTGC----CTTTCATCTAAGAGCCATAAATAATAATGTT-TC----------------CTATG-CGCC--G----CC--------CG----ACTTTCCCCC----GCCCATCCACAC---------------------------ATCTAAGCACCCAACCATTCCTCCA--------------------------------------------------------------TCCATCGAAAGTTTCTGAACGATTTG---TTTT-TCTGGC--------------------------------------------------GCT-------TTGCAGCTGAACGAATTGTATCCGATCGCCCGGCTGACACAGAAAATGGAGGACGCATTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGTATCCGATCGCCC............................1914.00440000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACAGAAAATGGAGGAC.....1914.00400400000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCCGATCGCCCGGCT........................1813.00301200000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTATCCGATCGCCCGGCTGACACA..................2713.00300300000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATCCGATCGCCCGGC.........................1813.00310100000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTATCCGATCGCCCGGCT........................2013.00300300000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGAATTGTATCCGATCGCCCGGCT........................2712.00202000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACGAATTGTATCCGAT.................................2012.00201010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCCGATCGCCCGGCTGACACA..................2412.00202000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAATTGTATCCGATCGCC.............................2111.00101000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGAATTGTATCCGATCGCCCGG..........................2511.00100100000000000000
...................................................................................................................................................................................................................................................................................................................................................G---TTTT-TCTGGC--------------------------------------------------GCT-------TTGCAGCTGAAC...............................................2611.00101000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCCGATCGCCCGGCG........................1811.00100100000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCCGGCTGACACAGAAAATGGAGG.......2611.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTATCCGATCGCCCG...........................1811.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGTATCCGATCGCCCGGCG........................2211.00101000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTATCCGATCGCCCGGCG........................2111.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATCCGATCGCCCGGCC........................1911.00101000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATTGTATCCGATCGCCCGGC.........................2311.00101000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACACAGAAAATGGAGGACGC...2211.00100000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGTATCCGATCGCCCGGCTGG......................2511.00101000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACGAATTGTATCCGATCGCCC............................2411.00110000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTATCCGATCGCCCGGCT........................2111.00101000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATTGTATCCGATCGCC.............................1911.00110000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACGAATTGTATCCGATCGCCC............................2511.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTATCCGATCGCCCGGCTGACACA..................2611.00101000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACGAATTGTATCCG...................................1811.00100010000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATCCGATCGCCCGGCT........................1911.00100100000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACACAGAAAATGGAGGA......1911.00100010000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGATCGCCCGGCTGACACAGAA...............2511.00101000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACACAGAAAATGGAGGAC.....2011.00101000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGTATCCGATCGCCCGGC.........................2111.00101000000000000000
droSec2
-------------------CATGAGCTGC---GAA-----------------------------ATATACAAAACAAATTAAGCTGT----CTTTCATCTAAGAGCCATAAATAATAATGTT-TC----------------CTATG-CGCC--G----CC--------CG----ACTTTCCCCC----GCCCATCCATAC---------------------------ATCTAAGCATCCAACCATTCCTCCA--------------------------------------------------------------TCCATCGAAAGTATCTGAACGGTTTG---TTTT-TCTGGC--------------------------------------------------GCT-------TTGCAGCTGAACGAATTGTATCCGATCGCCCGGCTGACACAGAAAATGGAGGACGCATTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACAGAAAATGGAGGACGC...2112.0020200
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGTATCCGATCGCCCGGC.........................2112.0022000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTATCCGATCGCCCGGC.........................1912.0020002
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTATCCGATCGCCCGGC.........................2011.0010010
...........................................................................................CTTTCATCTAAGAGCCATAAATAATAAT..................................................................................................................................................................................................................................................................................................................................................................2811.0010100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACAGAAAATGGAGGA......1811.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGCCCGGCTGACACAGA................2011.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGACACAGAAAATGGAGGAC.....2311.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACAGAAAATGGAGGACGCAT.2311.0010100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACACAGAAAATGGAGGA......1911.0011000
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTATCCGATCGCCCG...........................1811.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGAAAATGGAGGAAC....1960.1711000
droYak3
ATCGTC----------ATCCATGAGCTAC---GAA-----------------------------ATATTCAAAACAAATTAAGCTGC----CTTTCATCTAAGAGCCATAAATAATAATGTT-TT----------------CTATG-CACC--G----CC--------CC----TCTATCCCCC----A------------------------TCCCAT------AC--------------------------------------TC-AC---------TATTCA-----------CTATCC-A-----------ATATCCAAAGTATCTGAACGATTTG---TT-TGTGTGCC--------------------------------------------------GTT-------TCGCAGCTGAACGACTTGTATCCGATTGCCCGGCTGACGCAGAAAATGGAGGACGCCCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGTATCCGATTGCCCGGC.........................2212.00201000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCCCGGCTGACGCAGAAAAT............2312.00201000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCCCGGCTGACGCAGAA...............2112.00200000020000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGATTGCCCGGCTGACGC...................2112.00200100010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGCAGAAAATGGAGGAC.....2012.00200100010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACGACTTGTATCCGATTGCCCGGC.........................2811.00100010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGACTTGTATCCGATTGCC.............................2211.00100100000000
..................................................................................GCTGC----CTTTCATCTAAGAGCC..............................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTATCCGATTGCCCGGCT........................2111.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGATTGCCCGGCTGACGCA..................2211.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACTTGTATCCGATTGCCC............................2111.00110000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACGACTTGTATCCGATTGCCCGGCT........................2811.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCGGCTGACGCAGAAA..............1911.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATCCGATTGCCCGGC.........................1811.00100001000000
droEre2
AT----------------CCATGAGCTAC---AAA-----------------------------ATATACAAAACAAATTA--TTGC----CTTTCATCTAAGAGCCATAAATTATAATGTG-TT----------------CTATG-CACC--G----CC--------CG----ACTTTCCCCC----A------------------------TCCC-------------------------------------------------------------------------------CCATCC------------GCCATCCAAAGTATCTGAACGATTTG---CT-TGTCTGCC--------------------------------------------------GTT-------TCGCAGCTGAACGACTTGTATCCGATTGCCCGGCTGACGCAGAAAATGGAGGACGCCCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTATCCGATTGCCCGG..........................1911.0010010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGATTGCCCGGCTGACGCAGA................2411.0011000000

Generated: 05/17/2015 at 05:15 AM