ID:

dvi_6908

 Coordinate:

scaffold_12875:14616238-14616403 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.9 -9.7 -9.7

Flybase annnotation

exon [dvir_GLEANR_5704:8]; CDS [Dvir\GJ20259-cds]; exon [dvir_GLEANR_5704:7]; CDS [Dvir\GJ20259-cds]; intron [Dvir\GJ20259-in]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCTGGAGAAGAAATCGGTGCGGGAGCTGGCCGCAGGACTCAGTCGTTTGGGTAAGCATGAGTCGAGCTTCTGTTGCATGTTGCCTGCCTGCACCTGGATGCGTAGCTATAGTTGATATATATTTTGATTTTTATGTATTTACACTTTACTTTTACTTTCATATTATGATTTGTTGTGCTTGTACCTAAACCTGTATTGTATTGCAAAAATCCAAAGAACTGCCCCTCAAGCCGCCCGTAATGCCCAGAACCATGTTGAGCACAGTC
*********************************************************************************........((((...((..(((((.((((((.((((((((..........))))))))...)))..............))))))))..))...))))..************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 SRR060666
160_males_carcasses_total
 SRR060659
Argentina_testes_total
 SRR060671
9x160_males_carcasses_total
 SRR060660
Argentina_ovaries_total
 SRR060668
160x9_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060679
140x9_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060661
160x9_0-2h_embryos_total
 V047
embryo
 M047
female body
 SRR060663
160_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 M027
male body		 SRR060658
140_ovaries_total
 SRR060687
9_0-2h_embryos_total
 M061
embryo
 SRR060677
Argx9_ovaries_total
 GSM1528803
follicle cells		 SRR060657
140_testes_total
 SRR060664
9_males_carcasses_total
 SRR060680
 9xArg_testes_total
 M028
head
 SRR060685
9xArg_0-2h_embryos_total
 V053
head
 SRR060689
160x9_testes_total
 SRR060675
140x9_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060673
9_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060678
9x140_testes_total
 SRR060683
160_testes_total
 SRR1106729
mixed whole adult body
............................................................................................................................................................TTGATATGATGATTTGTTGT.......................................................................................... 20 2 2 163.50 327 240 26 23 9 7 7 7 4 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TGATATGATGATTTGTTGT.......................................................................................... 19 2 9 85.00 765 486 50 42 41 40 29 17 13 3 6 3 8 0 1 0 3 5 0 7 1 4 3 0 0 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0
.............................................................................................................................................................TGATATGATGATTTGTTGTC......................................................................................... 20 3 20 50.25 1005 622 109 55 43 42 38 25 24 0 4 2 11 1 0 0 1 6 1 5 9 4 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0
............................................................................................................................................................TTGATATGATGATTTGTTGTC......................................................................................... 21 3 10 27.20 272 198 18 9 8 4 9 4 4 0 0 1 1 0 0 1 2 0 0 0 2 4 0 1 0 0 0 0 0 5 0 0 0 1 0 0 0 0 0 0
..........AAAGCGGTACGCGAGCTGG............................................................................................................................................................................................................................................. 19 3 20 9.30 186 13 0 0 0 0 0 0 0 41 0 38 0 43 0 0 6 5 7 0 0 1 15 0 0 0 0 0 0 0 7 0 5 0 2 1 0 1 1 0
...........................................................................................................................................................TTTGATATGATGATTTGTTGT.......................................................................................... 21 2 1 5.00 5 4 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GCTGGAGAAGAAATCGGTGC...................................................................................................................................................................................................................................................... 20 0 1 5.00 5 0 0 3 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................CATATTATGATTTGTTGTGCTT...................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GCTGGAGAAGAAATCGGTGCGGGAGCT............................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................CGTAATGCCCAGAACCATGTTGA........ 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................GCCTGCCTGCACCTGGATGCGT................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................CAGGACTCAGTCGTTTGG........................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................GGACTCAGTCGTTTGGGAGAC................................................................................................................................................................................................................... 21 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................GCCGCAGGACTCAGTCGTTTGGGAG..................................................................................................................................................................................................................... 25 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................GCAGGACTCAGTCGTTTGG........................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......AAGAAATCGGTGCGGGAGCT............................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................CGGGAGCTGGCCGCAGGA..................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................AGAACCATGTTGAGCACAGTC 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TGATATTATGATTTGTTGTC......................................................................................... 20 2 2 1.00 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AAAACCCAAAGAACTGCCCCTCA...................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................GAACCATGTTGAGCACAGTC 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................AGCTGGCCGCAGGACTCAGTCGTTTGG........................................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................GCGGGAGCTGGCCGCAGGACTC.................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TGATATTATGATTTGTTGT.......................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................AGCTTCTGTTGCATGTTGCCTGCCTGCACC............................................................................................................................................................................ 30 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TTTGATATGATGATTTGTTGTC......................................................................................... 22 3 5 0.80 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TTGATATGATGATTTGTTG........................................................................................... 19 2 6 0.50 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TGATATGATGATTTGTTG........................................................................................... 18 2 19 0.37 7 0 1 0 1 0 0 0 0 0 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........AAAGCGGTACGCGAGCTGGC............................................................................................................................................................................................................................................ 20 3 8 0.25 2 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........TAAATCGGTACGCGAGCTGG............................................................................................................................................................................................................................................. 20 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................GATATGATGATTTGTTGT.......................................................................................... 18 2 20 0.10 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TTGATATGATGATTCGTTGT.......................................................................................... 20 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................ATATGATGATTTGTTGTC......................................................................................... 18 2 20 0.10 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AACCTGTTTTGTAATGAAAAAA......................................................... 22 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TTTGATATGATGATTTGTT............................................................................................ 19 2 12 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TCAAGCCGCTCGTATTCCC...................... 19 3 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................CGAGCTTCCGTTGAATG........................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
............................................................................................................................................................TTGATATGATGATTTGATGT.......................................................................................... 20 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CGACCTCTTCTTTAGCCACGCCCTCGACCGGCGTCCTGAGTCAGCAAACCCATTCGTACTCAGCTCGAAGACAACGTACAACGGACGGACGTGGACCTACGCATCGATATCAACTATATATAAAACTAAAAATACATAAATGTGAAATGAAAATGAAAGTATAATACTAAACAACACGAACATGGATTTGGACATAACATAACGTTTTTAGGTTTCTTGACGGGGAGTTCGGCGGGCATTACGGGTCTTGGTACAACTCGTGTCAG
**************************************************************************************........((((...((..(((((.((((((.((((((((..........))))))))...)))..............))))))))..))...))))..********************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR060678
9x140_testes_total
 SRR060681
Argx9_testes_total
 V047
embryo
 M047
female body
 M061
embryo
 M027
male body		 GSM1528803
follicle cells		 SRR060682
9x140_0-2h_embryos_total
.........................................................................................................................................................................................................................................GGGCATTACGGGTCTTGGTAC............ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................CCTACGCATCGATTTCAA......................................................................................................................................................... 18 1 1 1.00 1 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................GGGTTTCTTGACGGGGAGTT..................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................ACGGTCGGCATTACGGGTCTT................. 21 3 5 0.20 1 0 0 0 1 0 0 0 0
.......................................................................CAAAGTACAACTGACGAACGT.............................................................................................................................................................................. 21 3 5 0.20 1 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................................CGCGCATGCCGGGTCTTGG............... 19 3 8 0.13 1 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................CGCGCATGCCGGGTCTTG................ 18 3 20 0.10 2 0 0 0 1 0 0 0 1
......................................................................................................................................................................................................................................GTCGGGTATTACGGGTCTTA................ 20 3 14 0.07 1 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................................GCGGGCATGAGGGGTC................... 16 2 19 0.05 1 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:14616188-14616453 - dvi_6908 GCTGGAGAAGAAATCGGTGCGGGAGCTGGCCGCAGGACTCAGTCGTTTGGGTAAGCATGAG-T---------------CGAGCTTCTG--------TTGC-----ATGTTGCCTGC-----CT--G-------------CACCTGG---ATG---C-------GT---AGCTATAGT----T----------GATATAT-ATTTTGATTTTT--ATGTA-TTTACACTTTACTTTTACTTTCATATTAT-----------------GATTTGTTGTGC---TTGTAC-CTAAACCTGTATTGTATTGCAAAA------------------------ATCCAA------------AGAACTGCCCCTCAAGCCGCCCGTAATGCCCAGAACCATGTTGAG------CACAGTC
droMoj3 scaffold_6496:10095061-10095366 - dmo_1072 TCTGGAGAAGAAGTCGGTGCGAGAGCTAGCCGCAGGCCTCAGTCGTTTGGGTAAGCATGAG-T-----------AGCCATAAATCCTGTTGC----ATGTC--TG-C-CCGCCTGC-----C---A-------------CACTTAG-AGTGCAACCTGAATGCGT---AGCTATATAT---AG--A------GATATAT-ATTTTGATTTT---AT--GTTTTC---TTT--ATTTATTTTCATATTAT---TT------------GATTTGT---GC---TTGTTCCCTAAACTTGTCTTGTATTACCCAAACCACCAAAAAATCAACAATCAATATACAA------------AGATCTGCCCATCAAGCCGCCTATCATGCCACGAACTATGTTGAA------CACAGCC
droGri2 scaffold_15245:14630603-14630896 - ACTGGAAAAGAAGTCGGTGCGGGAACTGGCCGCTGGTCTGAGTCGTCTGGGTGAGTAGAG--CAAGGCAAATGCTGCATGCGAAT-----GAACTGT-----------GTGCCTGC-----CA--GTAGAAAAAGAGAGCACTTTG---ACT-----CGAG---T---AGT-----T--ACTGCAAGTT---T--ATATA--------TCTT-ATT--GTTTTGTATTTT--ATTTACTTTCATATTAT-----------------GATTTGTTGTG-TACTC-----GTA-AA-CGT-----ATTGTAAAA------------------------AACCAAAACAAAAACATCAGACCTGCCCCTTAAGCCGCCCATAATGCCCAGAACCATGTTGAGTCAGTCTGCAGTC
droWil2 scf2_1100000004822:2387393-2387642 + TCTCGAAAAGAAATCGGTGCGCGAACTGGCCGCAGGTCTCAATCGTCTGGGTAAGTTTGA--TG---------GAGCTCGAAATG-----------ATGCA--TG---CCGCCTGC-----TT--G-------------TAGGTAG---TA----CTCTAG---T---A----------------GTTGCTCT-----TGAT------TTCT-TTT--GTTTTGTATCTT--ATTGATTTTCCTATGTTTTATTTATTTAAAATTTGATCTT---------TT-----ATT-GCCTGT------------------------------------------AA-------AACTTAGAACTTCCCCTCAAGCCACCTGTTATGCCAAGAACCATATTGGG------CACATCG
dp5 3:6547285-6547557 + dps_1055 CCTTGAGAAGAAGTCTGTGCGCGAGCTGGCGGCAGGCCTTAGTCGATTGGGTAAGTGGAG--TGTCCCAGTCAGTGCATGAGAAG-----------ATGTA--TG-CGATGCCTGC-----CC-AG-------------CACTTTGTAGATCTCTCTCCATTCGT---AGATGTAGATTTTTGCAAGCT---T-----AAAC------TATT-TTT--ATTTTGTATCTT--ATTTATTTTCATATTTT-GATT------------GATTTGTTGTAC---TC-----GTT-AAATGT------------------------------------------AA------------AGAACTCCCCATGAAACCGCCCGTTATGCCCAGAACCCTCCTGAA------CACAGCA
droPer2 scaffold_2:6766574-6766846 + CCTTGAGAAGAAGTCTGTGCGCGAGCTGGCGGCAGGCCTTAGTCGATTGGGTAAGTGGAG--TGTCCCAGTCAGTGCATGAGAAG-----------ATGTA--TG-CGATGCCTGC-----CC-AG-------------CACTTTGTAGATCTATCTCCATTCGT---AGATGTAGATTTTTGCAAGCT---T-----AAAC------TATT-TTT--ATTTTGTATCTT--ATTTATTTTCATATTTT-GATT------------GATTTGTTGTAC---TC-----GTT-AAATGT------------------------------------------AA------------AGAACTCCCCATGAAACCGCCCGTTATGCCCAGAACCCTCCTGAA------CACAGCA
droAna3 scaffold_13266:10074911-10075174 - CCTGGAGAAGAAGTCTGTTCGCGAACTAGCCGCTGGACTTAACCGACTGGGTAAGTAGAA--TATACCA-ATTGCGCACGAGTAG-----------CTG-T--TGAAGATGCCTGC-----CC-AG-------------AACCTAG---AAC---CATTCT---TATCTGT---AGA--TCTGCAACCTAT-G-----TGATTT----TTAT-TTC--GTTTCGTATCTT--ATTTATTTTCATATTTT-----------------GATTTGTTGTACTACTC-----GTT-ACTTGT------------------------------------------AA------------AGAACTTCCCCTCAAGCCGCCTGTTATGCCCAGAACCCTCTTAAA------TACAGCG
droBip1 scf7180000396428:495115-495378 - CCTGGAGAAGAAGTCTGTCCGCGAACTGGCCGCTGGACTCAACCGACTGGGTAAGTAAAG--GACACTA-ATTGCGCACGAGTAG-----------CTA-T--TGAAGATGCCTGC-----CC-AG-------------CACCTAG---AAC---CATTCT---TATCCGT---AGA--TCTGCAACCTAT-G-----TGATTT----TTAT-TTC--GTTTCGTATCTT--ATTTATTTTCATATTTT-----------------GATTTGTTGTACTACTC-----GTT-ACTTGT------------------------------------------AA------------AGAACTTCCCCTCAAGCCGCCTGTTATGCCCAGAACCCTCTTGAA------TGCAGCA
droKik1 scf7180000302476:3393989-3394253 - CCTGGAAAAGAAGTCCGTGCGAGAGCTGGCAGCGGGACTCAACAGATTGGGTAAGTGTAGAATCCTCCG-CACTTGCACGCGTAG-----------TTGTTGTGGAAGATGCCTGCCTGATCC-GT-------------CACTTGA---AAC---CCTTTT---TAGCAGT---AGT--------------TT-----TGAT------CTAT-TTT--GTTTTGTATCTT--ATTTATTTTCATATTTT-GATT------------GATTTGTTGTACTCCTC-----GTT-ACTTGT------------------------------------------AA------------AGAACTCCCCCTCAAACCGCCCGTTATGCCCAGAACCCTTCTGAA------CGCAGCA
droFic1 scf7180000453215:652668-652927 + CCTAGAGAAGAAGTCTGTGCGAGAACTAGCAGCGGGACTCAATAGACTGGGTAAGTTAAT--TGTCTTG-CTTGCGCATGAGTAA-----------CTGCT--TGAAGATGCCTGC-----CC-AG-------------CACTTAG---ATT----GCTAA---TAGTTGT---AGT--TTAGCAACCACTTT-----TGAT------TTTC-CTT--GTTTCGTATTTT--ATTTATTTTCATATTTT-----------------GATTTGTTGTAC---TC-----GTT-ACTTGT------------------------------------------AA------------AGAACTCCCCCTCAAGCCGCCCGTAATGCCCAGAACCCTGCTGAA------CGCAGCA
droEle1 scf7180000491347:447678-447934 - CCTCGAGAAGAAGTCTGTGCGGGAACTAGCAGCGGGACTCAATAGAATGGGTAAGCTAAA--TTCTCTG-CATGCTCACTTGT-----------------------ATCTGCTTGT-----CCAAG-------------TACTTAG---CTC---CCCTGT---TAGTTGT---AGC--TATGCAACCCCTTT-----TGAT------TTTCGTAT--GTTTTGTATCTT--ATTTATTTTCATATTTT-GATT------------GATTTCTTGCAC---TC-----CCT-ACTTGT------------------------------------------AA------------AGAACTCCCCCTCAAGCCGCCTGTTATGCCCAGAACGCTGCTAAA------CGCGGCC
droRho1 scf7180000779971:377013-377282 - TCTTGAGAAAAAGTCTGTGCGAGAACTAGCAGCGGGTCTCAATAGATTGGGTAAGTTGAA--TGCTCTG-CATGCGCATAAATAT-T---TAG---CTGCT--TATAGTTGCCTGC-----CC-AG-------------TACTTAG---CTT---TCCTTT---TAGTTGT---AGC--TATGCAACCCCTTT-----TGAT------ATTCGTTT--GTTTTGTATCTT--ATTTATTTTCATATTTT-GATT------------GATTTGTTGCAC---TC-----CTT-ACTTGT------------------------------------------AA------------AGAAATCCCCATCAAGCCGCCCGTTATGCCCAGAACCCTGTTGAA------CGCAGCA
droBia1 scf7180000301506:757248-757511 + TCTAGAAAAGAAGTCTGTGCGAGAGCTTGCAGCGGGTCTCAATAGAATGGGTAAGTAAGA--TACTGTG-CCTGCGCACGATAAG-----------CTGCT--CGAAAATGCCTGC-----TC-AG-------------CACTTAG---ATC---C-CCCA---AAGAAGT---AGT--TATGCAACCTTAGT-----TGAT------TTTC-ATT--GTTTTGTATCTT--ATTTATTTTCATATTTT-GATT------------GATTTGTTGTAC---AC-----GTT-ACTTGT------------------------------------------AA------------AGAAATCCCCTTCAAGCCGCCAGTTATGCCTAGAACGCTGCTGAG------CGCATCA
droTak1 scf7180000415870:301261-301524 + CCTAGAAAAGAAGTCTGTGCGAGAACTAGCAGCGGGTCTCAATAGAATGGGTAAGCTATC--TACCGGT-CGTGCGCACGATTAG-----------TTGCT--TGAAAATGCCTGC-----TG-AG-------------CACTTAG---ATT---C-CTGA---TAGAAGT---AGT--TATGCAACCTCATT-----TGAT------TTCC-TTT--GTTTTGTATCTT--ATTTATTTTCATATTTT-GATT------------GATTTGTTGTAC---TC-----GTT-ACTTGT------------------------------------------AA------------AGAAATCCCCCTCAAGCCGCCGGTAATGCCTAGAACCTTGCTGAG------CGCAGCC
droEug1 scf7180000409672:5583352-5583614 - CCTAGAAAAGAAGTCTGTGCGAGAACTAGCTGCGGGACTTAATAGAAAGGGTAAGTTGAA--GCATTAG-CATGAGATAAAGAAG-----------TTTAT--TGAAAATGCCTGC-----CC--G-------------TACTTAA---GTT---TGCTTT---TAGCAGT---AGT--GATGCAACTAGTTT-----TGAT------TTTA-TT---TTTATGTATTTT--GTTTATTTTCATATTTT-GATT------------GATTTGTTGTGC---TC-----GTT-AATTGT------------------------------------------AA------------AGAACTCCCCTTAAAACCGGCCGTTATGCCCAGAACCCTGCTGAA------CACAGCA
dm3 chr2R:3565860-3566124 - CCTTGAAAAGAAGTCTGTGCGAGAACTAGCAGCGGGTCTAAACAGAATGGGTAAGTTGTT--CACTATG-CATGCGCACGAGTAG-----------TAGCT--TGAAAATGCCTGC-----CT-AG-------------CACTTAG---CTT---CTCTGT---TAGTAGA---AGT--GATGCAACCTCTTT-----TGAC------CTCC-TTT--GTTTTGTATCTT--ATTTATTTTCATATTTT-----------------GATTTGTTGTAC---TCGTTC-GTT-ACCCGT------------------------------------------AA------------AGAACTCCCCCTAAAGCCGCCCGTTATGCCAAGAACCCTGCTGAA------CGCGACT
droSim2 2r:4406105-4406364 - dsi_28354 CCTCGAAAAGAAGTCTGTGCGAGAACTAGCAGCGGGTCTCAACAGAATGGGTAAGTTGTT--CACTATG-CATGCGCACGAGTAG-----------TAGCT--TGAAAATGCCTGC-----CT-AG-------------CACTTAG---CAC--------T---TAGTAGA---AGT--GATGCAACCTCTTT-----TGAC------CTCC-TTT--GTTTTGTATCTT--ATTTATTTTCATATTTT-----------------GATTTGTTGTAC---TCGTTC-GTA-ACCCGT------------------------------------------AA------------AGAACTCCCCCTAAAGCCGCCCGTTATGCCAAGAACCCTGCTGAA------CGCGACG
droSec2 scaffold_1:1221615-1221873 - CCTCGAAAAGAAGTCTGTGCGAGAACTAGCAGCGGGTCTCAACAGAATGGGTAAGTTGTT--CAC-ATG-CATGCGCACGATTAG-----------TAGCT--TGAAAATGCCTGC-----TT-AG-------------CACTTAG---CAC--------T---TAGTAGA---AGT--GATGCAACCTCTTT-----TGAC------CTCC-TTT--GTTTTGTATCTT--ATTTATTTTCATATTTT-----------------GATTTGTTGTAC---TCGTTC-GTA-ACCCGT------------------------------------------AA------------AGAACTCCCCCTAAAGCCGCCCGTTATGCCAAGAACCCTGCTGAA------CGCGACG
droYak3 2L:16236613-16236873 - CCTTGAAAAGAAGTCTGTGCGGGAACTAGCAGCGGGTCTCAACAGAATGGGTAAGTTGCT--CACTATG-CATGCGCACGAATAG-----------TAGTT--TGAAAATGCCTGC-----CC-AG-------------CACTTAC---CTC---CTCTGT---TAGTAAA---TGT--AATGCAACCTCTTT-----TGAC------TTTC-TTT--GTTTTGTATTTC--ATTTATTTTCATATTTT-----------------GATTTGTTGTAC---TC-----GTT-ACCCGT------------------------------------------AA------------AGAACTTCCCCTAAAGCCGCCCGTTATGCCAAGAACCTTGCTGAA------CGCGGCG
droEre2 scaffold_4929:19041540-19041800 + CCTTGAAAAGAAGTCTGTGCGAGAACTAGCAGCGGGTCTCAACAGAATGGGTAAGTTGTT--CACTATG-CATGCGCATGAGTAG-----------TAGCT--TGAAAATGCCTGC-----CC-AG-------------CACCTAC---CTC---ATCTGT---TAGTAGA---AGT--GATGCAACCTCTTT-----TGAC------TTCC-GTT--GTTTTGTATCTT--ATTTATTTTCATATTTT-----------------GATTTGTTGTAC---TC-----GTT-ACCCGT------------------------------------------AA------------AGAACTCCCCCTAAAGCCGCCCGTTATGCCAAGAACCTTGCTGAA------CGTGGCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GCTGGAGAAGAAATCGGTGCGGGAGCTGGCCGCAGGACTCAGTCGTTTGGGTAAGCATGAG-T---------------CGAGCTTCTG--------TTGC-----ATGTTGCCTGC-----CT--G-------------CACCTGG---ATG---C-------GT---AGCTATAGT----T----------GATATAT-ATTTTGATTTTT--ATGTA-TTTACACTTTACTTTTACTTTCATATTAT-----------------GATTTGTTGTGC---TTGTAC-CTAAACCTGTATTGTATTGCAAAA------------------------ATCCAA------------AGAACTGCCCCTCAAGCCGCCCGTAATGCCCAGAACCATGTTGAG------CACAGTCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
GCTGGAGAAGAAATCGGTGC........................................................................................................................................................................................................................................................................................................................................................................................................2015.005000000000301000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................................................CATATTAT-----------------GATTTGTTGTGC---TT.................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000001000
GCTGGAGAAGAAATCGGTGCGGGAGCT.................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CGTAATGCCCAGAACCATGTTGA..............2311.001000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................GCCTGC-----CT--G-------------CACCTGG---ATG---C-------GT---....................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
................................CAGGACTCAGTCGTTTGG..........................................................................................................................................................................................................................................................................................................................................................................1811.001000000000010000000000000000000000000000000000000000000000000000
............................GCCGCAGGACTCAGTCGTTTGGGAG.......................................................................................................................................................................................................................................................................................................................................................................2511.001000000000001000000000000000000000000000000000000000000000000000
...............................GCAGGACTCAGTCGTTTGG..........................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.......AAGAAATCGGTGCGGGAGCT.................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000100000000000000000000000000000000000000000000000000
...................CGGGAGCTGGCCGCAGGA.......................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................................................................AGAACCATGTTGAG------CACAGTC2111.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................................................................................................................................................GAACCATGTTGAG------CACAGTC2011.001000000000000000000000000000001000000000000000000000000000000000
.......................AGCTGGCCGCAGGACTCAGTCGTTTGG..........................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000100000000000000000000000000000000000
..................GCGGGAGCTGGCCGCAGGACTC....................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000100000000000000000000000000000000
................................................................................AGCTTCTG--------TTGC-----ATGTTGCCTGC-----CT--G-------------CACC.............................................................................................................................................................................................................................................................................3011.001000000000000000000000000000000000000000000000000000000000000001
droMoj3
TCTGGAGAAGAAGTCGGTGCGAGAGCTAGCCGCAGGCCTCAGTCGTTTGGGTAAGCATGAG-T-----------AGCCATAAATCCTGTTGC----ATGTC--TG-C-CCGCCTGC-----C---A-------------CACTTAG-AGTGCAACCTGAATGCGT---AGCTATATAT---AG--A------GATATAT-ATTTTGATTTT---AT--GTTTTC---TTT--ATTTATTTTCATATTAT---TT------------GATTTGT---GC---TTGTTCCCTAAACTTGTCTTGTATTACCCAAACCACCAAAAAATCAACAATCAATATACAA------------AGATCTGCCCATCAAGCCGCCTATCATGCCACGAACTATGTTGAA------CACAGCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..TGGAGAAGAAGTCGGTGCGAGAGCT.................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
...............................................................................................................................................TAG-AGTGCAACCTGAATGCGT---AGCTAT..............................................................................................................................................................................................................................................2711.001100000
........................................................ATGAG-T-----------AGCCATAAATCCTGTTGC----............................................................................................................................................................................................................................................................................................................................2411.001100000
..............................................................................................................................................................................................................................................................................................................................................................................CAAGCCGCCTATCATGCCACGAACTAT...................2711.001100000
droGri2
ACTGGAAAAGAAGTCGGTGCGGGAACTGGCCGCTGGTCTGAGTCGTCTGGGTGAGTAGAG--CAAGGCAAATGCTGCATGCGAAT-----GAACTGT-----------GTGCCTGC-----CA--GTAGAAAAAGAGAGCACTTTG---ACT-----CGAG---T---AGT-----T--ACTGCAAGTT---T--ATATA--------TCTT-ATT--GTTTTGTATTTT--ATTTACTTTCATATTAT-----------------GATTTGTTGTG-TACTC-----GTA-AA-CGT-----ATTGTAAAA------------------------AACCAAAACAAAAACATCAGACCTGCCCCTTAAGCCGCCCATAATGCCCAGAACCATGTTGAGTCAGTCTGCAGTCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...................................................................................................................................................................................................................................................................................................................................................................GACCTGCCCCTTAAGCCGCCC....................................2111.00110
droWil2
TCTCGAAAAGAAATCGGTGCGCGAACTGGCCGCAGGTCTCAATCGTCTGGGTAAGTTTGA--TG---------GAGCTCGAAATG-----------ATGCA--TG---CCGCCTGC-----TT--G-------------TAGGTAG---TA----CTCTAG---T---A----------------GTTGCTCT-----TGAT------TTCT-TTT--GTTTTGTATCTT--ATTGATTTTCCTATGTTTTATTTATTTAAAATTTGATCTT---------TT-----ATT-GCCTGT------------------------------------------AA-------AACTTAGAACTTCCCCTCAAGCCACCTGTTATGCCAAGAACCATATTGGG------CACATCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......AAAGAAATCGGTGCGCGAACT.................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
TCTCGAAAAGAAATCGGTGCGCGAACT.................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
...................................................................................................................................................................................................................................................................................................................................................................................CACCTGTTATGCCAAGAAC......................1911.00100010
................................................................................................................................................................................................T-----TGAT------TTCT-TTT--GTTTTGTAT.........................................................................................................................................................................................2111.00100010
............................................GTCTGGGTAAGTTTGA--TG---------GAGCTC.............................................................................................................................................................................................................................................................................................................................................2411.00100100
....GAAAAGAAATCGGTGCGC......................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
dp5
CCTTGAGAAGAAGTCTGTGCGCGAGCTGGCGGCAGGCCTTAGTCGATTGGGTAAGTGGAG--TGTCCCAGTCAGTGCATGAGAAG-----------ATGTA--TG-CGATGCCTGC-----CC-AG-------------CACTTTGTAGATCTCTCTCCATTCGT---AGATGTAGATTTTTGCAAGCT---T-----AAAC------TATT-TTT--ATTTTGTATCTT--ATTTATTTTCATATTTT-GATT------------GATTTGTTGTAC---TC-----GTT-AAATGT------------------------------------------AA------------AGAACTCCCCATGAAACCGCCCGTTATGCCCAGAACCCTCCTGAA------CACAGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.CTTGAGAAGAAGTCTGTGCGC......................................................................................................................................................................................................................................................................................................................................................................................................2113.0030100000002
.................................................................................................................................................................................................................................................................................TGTAC---TC-----GTT-AAATGT------------------------------------------AA------------AG........................................................2011.0010000000010
.CTTGAGAAGAAGTCTGTGC........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.......................AGCTGGCGGCAGGCCTTAGTC................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................CGT---AGATGTAGATTTTTT.....................................................................................................................................................................................................................................1811.0010000100000
......................................................................................................................................................................................................................................................................................................................................................................................CCGTTATGCCCAGAACCCTCC.................2111.0010100000000
......GAAGAAGTCTGTGCGCGAGCTGGCGGC...........................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000001
..............................GGCAGGCCTTAGTCGATTG...........................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
........................................................................................................................................................................AGATGTAGATTTTTGCAAGCT---............................................................................................................................................................................................................................2111.0010100000000
..................................GGCCTTAGTCGATTGGGA........................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
..................................................................................................................................................................................................................................................................................GTAC---TC-----GTT-AAATGT------------------------------------------AA------------AGA.......................................................2011.0010100000000
droPer2
CCTTGAGAAGAAGTCTGTGCGCGAGCTGGCGGCAGGCCTTAGTCGATTGGGTAAGTGGAG--TGTCCCAGTCAGTGCATGAGAAG-----------ATGTA--TG-CGATGCCTGC-----CC-AG-------------CACTTTGTAGATCTATCTCCATTCGT---AGATGTAGATTTTTGCAAGCT---T-----AAAC------TATT-TTT--ATTTTGTATCTT--ATTTATTTTCATATTTT-GATT------------GATTTGTTGTAC---TC-----GTT-AAATGT------------------------------------------AA------------AGAACTCCCCATGAAACCGCCCGTTATGCCCAGAACCCTCCTGAA------CACAGCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................GTGCGCGAGCTGGCGGCAGGCC......................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
.......................................................................................................................................................................................................................................................................................................................................................................................CGTTATGCCCAGAACCCTCCTGAA------CAC....2711.001010000
.CTTGAGAAGAAGTCTGTGC........................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
droAna3
CCTGGAGAAGAAGTCTGTTCGCGAACTAGCCGCTGGACTTAACCGACTGGGTAAGTAGAA--TATACCA-ATTGCGCACGAGTAG-----------CTG-T--TGAAGATGCCTGC-----CC-AG-------------AACCTAG---AAC---CATTCT---TATCTGT---AGA--TCTGCAACCTAT-G-----TGATTT----TTAT-TTC--GTTTCGTATCTT--ATTTATTTTCATATTTT-----------------GATTTGTTGTACTACTC-----GTT-ACTTGT------------------------------------------AA------------AGAACTTCCCCTCAAGCCGCCTGTTATGCCCAGAACCCTCTTAAA------TACAGCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................................................................................................CCTGTTATGCCCAGAACCCTC..................2111.001010000
........................................................................................................................................................................................................................................................................................................................................................................TCCCCTCAAGCCGCCTGTTATGCCC...........................2511.001010000
.............TCTGTTCGCGAACTAGCCGCTGGA.......................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
droBip1
CCTGGAGAAGAAGTCTGTCCGCGAACTGGCCGCTGGACTCAACCGACTGGGTAAGTAAAG--GACACTA-ATTGCGCACGAGTAG-----------CTA-T--TGAAGATGCCTGC-----CC-AG-------------CACCTAG---AAC---CATTCT---TATCCGT---AGA--TCTGCAACCTAT-G-----TGATTT----TTAT-TTC--GTTTCGTATCTT--ATTTATTTTCATATTTT-----------------GATTTGTTGTACTACTC-----GTT-ACTTGT------------------------------------------AA------------AGAACTTCCCCTCAAGCCGCCTGTTATGCCCAGAACCCTCTTGAA------TGCAGCASizeHit CountTotal NormTotal
No Reads
droKik1
CCTGGAAAAGAAGTCCGTGCGAGAGCTGGCAGCGGGACTCAACAGATTGGGTAAGTGTAGAATCCTCCG-CACTTGCACGCGTAG-----------TTGTTGTGGAAGATGCCTGCCTGATCC-GT-------------CACTTGA---AAC---CCTTTT---TAGCAGT---AGT--------------TT-----TGAT------CTAT-TTT--GTTTTGTATCTT--ATTTATTTTCATATTTT-GATT------------GATTTGTTGTACTCCTC-----GTT-ACTTGT------------------------------------------AA------------AGAACTCCCCCTCAAACCGCCCGTTATGCCCAGAACCCTTCTGAA------CGCAGCASizeHit CountTotal NormTotal
No Reads
droFic1
CCTAGAGAAGAAGTCTGTGCGAGAACTAGCAGCGGGACTCAATAGACTGGGTAAGTTAAT--TGTCTTG-CTTGCGCATGAGTAA-----------CTGCT--TGAAGATGCCTGC-----CC-AG-------------CACTTAG---ATT----GCTAA---TAGTTGT---AGT--TTAGCAACCACTTT-----TGAT------TTTC-CTT--GTTTCGTATTTT--ATTTATTTTCATATTTT-----------------GATTTGTTGTAC---TC-----GTT-ACTTGT------------------------------------------AA------------AGAACTCCCCCTCAAGCCGCCCGTAATGCCCAGAACCCTGCTGAA------CGCAGCASizeHit CountTotal NormTotal
No Reads
droEle1
CCTCGAGAAGAAGTCTGTGCGGGAACTAGCAGCGGGACTCAATAGAATGGGTAAGCTAAA--TTCTCTG-CATGCTCACTTGT-----------------------ATCTGCTTGT-----CCAAG-------------TACTTAG---CTC---CCCTGT---TAGTTGT---AGC--TATGCAACCCCTTT-----TGAT------TTTCGTAT--GTTTTGTATCTT--ATTTATTTTCATATTTT-GATT------------GATTTCTTGCAC---TC-----CCT-ACTTGT------------------------------------------AA------------AGAACTCCCCCTCAAGCCGCCTGTTATGCCCAGAACGCTGCTAAA------CGCGGCCSizeHit CountTotal NormTotal
No Reads
droRho1
TCTTGAGAAAAAGTCTGTGCGAGAACTAGCAGCGGGTCTCAATAGATTGGGTAAGTTGAA--TGCTCTG-CATGCGCATAAATAT-T---TAG---CTGCT--TATAGTTGCCTGC-----CC-AG-------------TACTTAG---CTT---TCCTTT---TAGTTGT---AGC--TATGCAACCCCTTT-----TGAT------ATTCGTTT--GTTTTGTATCTT--ATTTATTTTCATATTTT-GATT------------GATTTGTTGCAC---TC-----CTT-ACTTGT------------------------------------------AA------------AGAAATCCCCATCAAGCCGCCCGTTATGCCCAGAACCCTGTTGAA------CGCAGCASizeHit CountTotal NormTotal
No Reads
droBia1
TCTAGAAAAGAAGTCTGTGCGAGAGCTTGCAGCGGGTCTCAATAGAATGGGTAAGTAAGA--TACTGTG-CCTGCGCACGATAAG-----------CTGCT--CGAAAATGCCTGC-----TC-AG-------------CACTTAG---ATC---C-CCCA---AAGAAGT---AGT--TATGCAACCTTAGT-----TGAT------TTTC-ATT--GTTTTGTATCTT--ATTTATTTTCATATTTT-GATT------------GATTTGTTGTAC---AC-----GTT-ACTTGT------------------------------------------AA------------AGAAATCCCCTTCAAGCCGCCAGTTATGCCTAGAACGCTGCTGAG------CGCATCASizeHit CountTotal NormTotal
No Reads
droTak1
CCTAGAAAAGAAGTCTGTGCGAGAACTAGCAGCGGGTCTCAATAGAATGGGTAAGCTATC--TACCGGT-CGTGCGCACGATTAG-----------TTGCT--TGAAAATGCCTGC-----TG-AG-------------CACTTAG---ATT---C-CTGA---TAGAAGT---AGT--TATGCAACCTCATT-----TGAT------TTCC-TTT--GTTTTGTATCTT--ATTTATTTTCATATTTT-GATT------------GATTTGTTGTAC---TC-----GTT-ACTTGT------------------------------------------AA------------AGAAATCCCCCTCAAGCCGCCGGTAATGCCTAGAACCTTGCTGAG------CGCAGCCSizeHit CountTotal NormTotal
No Reads
droEug1
CCTAGAAAAGAAGTCTGTGCGAGAACTAGCTGCGGGACTTAATAGAAAGGGTAAGTTGAA--GCATTAG-CATGAGATAAAGAAG-----------TTTAT--TGAAAATGCCTGC-----CC--G-------------TACTTAA---GTT---TGCTTT---TAGCAGT---AGT--GATGCAACTAGTTT-----TGAT------TTTA-TT---TTTATGTATTTT--GTTTATTTTCATATTTT-GATT------------GATTTGTTGTGC---TC-----GTT-AATTGT------------------------------------------AA------------AGAACTCCCCTTAAAACCGGCCGTTATGCCCAGAACCCTGCTGAA------CACAGCASizeHit CountTotal NormTotal
No Reads
dm3
CCTTGAAAAGAAGTCTGTGCGAGAACTAGCAGCGGGTCTAAACAGAATGGGTAAGTTGTT--CACTATG-CATGCGCACGAGTAG-----------TAGCT--TGAAAATGCCTGC-----CT-AG-------------CACTTAG---CTT---CTCTGT---TAGTAGA---AGT--GATGCAACCTCTTT-----TGAC------CTCC-TTT--GTTTTGTATCTT--ATTTATTTTCATATTTT-----------------GATTTGTTGTAC---TCGTTC-GTT-ACCCGT------------------------------------------AA------------AGAACTCCCCCTAAAGCCGCCCGTTATGCCAAGAACCCTGCTGAA------CGCGACTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................AACTAGCAGCGGGTCTAAACAGAATGG..........................................................................................................................................................................................................................................................................................................................................................................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000200000000000100000000001000
....GAAAAGAAGTCTGTGCGAGA....................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100200000000
..........................TAGCAGCGGGTCTAAACAGAATGGG.........................................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................CGGGTCTAAACAGAATGG..........................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000001000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................GAACTCCCCCTAAAGCCGCCCGTTA................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................GTTGTAC---TCGTTC-GTT-ACCCGT------------------------------------------A.......................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000100000
..............CTGTGCGAGAACTAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
.............TCTGTGCGAGAACTAGCAGCGGG........................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
...TGAAAAGAAGTCTGTGCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......AAGAAGTCTGTGCGAGAACTAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000
..........................TAGCAGCGGGTCTAAACAGAATGG..........................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................CAAGAACCCTGCTGAA------CGCGACT2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
..........................TAGCAGCGGGTCTAAACAGAATGGA.........................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................AGAACCCTGCTGAA------CGCGACT2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AGCAGCGGGTCTAAACAGAATGGAAC.......................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..........................TAGCAGCGGGTCTAAACAGAATGGGA........................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AACTAGCAGCGGGTCTAAACAGA..............................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..TTGAAAAGAAGTCTGTGCGAGAA...................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TGCGAGAACTAGCAGCGGGTCTAA...................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................TGTTGTAC---TCGTTC-GTT-ACCCGT------------------------------------------A.......................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
..........AAGTCTGTGCGAGAACTAGCAG............................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GCGAGAACTAGCAGCGGGT.......................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................GAACCCTGCTGAA------CGCGACT2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TGAAAAGAAGTCTGTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................AAGAACCCTGCTGAA------CGCGACT2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................GTGCGAGAACTAGCAGCGGGTC......................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
..TTGAAAAGAAGTCTGTGCGA......................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
...........AGTCTGTGCGAGAACTAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GAAAAGAAGTCTGTGCGAGAACT.................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.........GAAGTCTGTGCGAGAACT.................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TGAAAAGAAGTCTGTGCGAGAACT.................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................TGTTGTAC---TCGTTC-GTT-ACCCGT------------------------------------------........................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..............................AGCGGGTCTAAACAGAATG...........................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........AAGTCTGTGCGAGAACTAGCAGCGG.........................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTAAGTTGTT--CACTATG-CATG..................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
...................CGAGAACTAGCAGCGGGTCTAA...................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................CTCTGT---TAGTAGA---AGT--GATGCAA..................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................CGCCCGTTATGCCAAGAACCCTGCTGAA------C......2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............CTGTGCGAGAACTAGCAGCGGGTCTAAAC.................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CTTGAAAAGAAGTCTGTGCGAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
............................GCAGCGGGTCTAAACAGAATGG..........................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AGAATGGGTAAGTTGTT--CACTA.........................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................GCCAAGAACCCTGCTGAA------.......1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................AAGAACCCTGCTGAA------CGCGAC.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GAAGTCTGTGCGAGAACTAGCAGCGGG........................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TTGTAC---TCGTTC-GTT-ACCCGT------------------------------------------A.......................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................CTCCCCCTAAAGCCGCCCGTT.................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TTATGCCAAGAACCCTGCTGAA------CGCGAC.2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.................................................................................................................................................................................................................................................................................TGTAC---TCGTTC-GTT-ACCCGT------------------------------------------AA------------..........................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TAGCAGCGGGTCTAAACAGAC.............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TTGTAC---TCGTTC-GTT-ACCCG...................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...TGAAAAGAAGTCTGTGCGAGA....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
.......................AACTAGCAGCGGGTCTAAACAGAAT............................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.....AAAAGAAGTCTGTGCGAGAACTAGCA.............................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TCTGTGCGAGAACTAGCAGCGG.........................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GAAGTCTGTGCGAGAACTAGCAGCG..........................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AGTCTGTGCGAGAACTAGCAGCGGG........................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........................TAGCAGCGGGTCTAAACAGAATGGAAC.......................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GAGAACTAGCAGCGGGTC......................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...................CGAGAACTAGCAGCGGGTCTAAACAG...............................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................GCCCGTTATGCCAAGAACCCT...................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................A---AGT--GATGCAACCTCTTT-----TGAC------CTC.........................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AAAAGAAGTCTGTGCGAGAACT.................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...................CGAGAACTAGCAGCGGGTC......................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
.................................GGGTCTAAACAGAATGGGAG.......................................................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CCTCGAAAAGAAGTCTGTGCGAGAACTAGCAGCGGGTCTCAACAGAATGGGTAAGTTGTT--CACTATG-CATGCGCACGAGTAG-----------TAGCT--TGAAAATGCCTGC-----CT-AG-------------CACTTAG---CAC--------T---TAGTAGA---AGT--GATGCAACCTCTTT-----TGAC------CTCC-TTT--GTTTTGTATCTT--ATTTATTTTCATATTTT-----------------GATTTGTTGTAC---TCGTTC-GTA-ACCCGT------------------------------------------AA------------AGAACTCCCCCTAAAGCCGCCCGTTATGCCAAGAACCCTGCTGAA------CGCGACGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................CAAGAACCCTGCTGAA------CGC....1912.00202000000000000000
.....................AGAACTAGCAGCGGGTCTCAACAGAA.............................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................ATGCCAAGAACCCTGCTGAA------CGCGG..2511.00100100000000000000
...CGAAAAGAAGTCTGTGCGAGAA...................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................ATGCCAAGAACCCTGCTGAA------CGCGA..2511.00100100000000000000
................GTGCGAGAACTAGCAGCGGGTCTCA...................................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................ATGCCAAGAACCCTGCTGAA------C......2111.00100100000000000000
....................................................................................................................................................................................................................................................ATTTT-----------------GATTTGTTGTAC---T..................................................................................................................................1811.00110000000000000000
....GAAAAGAAGTCTGTGCGA......................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
....GAAAAGAAGTCTGTGCGG......................................................................................................................................................................................................................................................................................................................................................................................................1820.50101000000000000000
droSec2
CCTCGAAAAGAAGTCTGTGCGAGAACTAGCAGCGGGTCTCAACAGAATGGGTAAGTTGTT--CAC-ATG-CATGCGCACGATTAG-----------TAGCT--TGAAAATGCCTGC-----TT-AG-------------CACTTAG---CAC--------T---TAGTAGA---AGT--GATGCAACCTCTTT-----TGAC------CTCC-TTT--GTTTTGTATCTT--ATTTATTTTCATATTTT-----------------GATTTGTTGTAC---TCGTTC-GTA-ACCCGT------------------------------------------AA------------AGAACTCCCCCTAAAGCCGCCCGTTATGCCAAGAACCCTGCTGAA------CGCGACGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................................................................................TTATGCCAAGAACCCTGC.................1811.0010010
..................GCGAGAACTAGCAGCGGGTCTCAAC.................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
............GTCTGTGCGAGAACTAGCAGCGGGT.......................................................................................................................................................................................................................................................................................................................................................................................2511.0011000
.....................AGAACTAGCAGCGGGTCTCA...................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
.........GAAGTCTGTGCGAGAACTAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
droYak3
CCTTGAAAAGAAGTCTGTGCGGGAACTAGCAGCGGGTCTCAACAGAATGGGTAAGTTGCT--CACTATG-CATGCGCACGAATAG-----------TAGTT--TGAAAATGCCTGC-----CC-AG-------------CACTTAC---CTC---CTCTGT---TAGTAAA---TGT--AATGCAACCTCTTT-----TGAC------TTTC-TTT--GTTTTGTATTTC--ATTTATTTTCATATTTT-----------------GATTTGTTGTAC---TC-----GTT-ACCCGT------------------------------------------AA------------AGAACTTCCCCTAAAGCCGCCCGTTATGCCAAGAACCTTGCTGAA------CGCGGCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................CGTTATGCCAAGAACCTTGCTGAA------C......2511.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................AGAACCTTGCTGAA------CGCGGC.2011.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................AGCCGCCCGTTATGCCAAG.........................1911.00100100000000
...TGAAAAGAAGTCTGTGCGGGA....................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.....................................................AGTTGCT--CACTATG-CATGCGCACGA...........................................................................................................................................................................................................................................................................................................................................2511.00101000000000
....GAAAAGAAGTCTGTGCGGGAACTAGC..............................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
..TTGAAAAGAAGTCTGTGCGGG.....................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
.....AAAAGAAGTCTGTGCGGGA....................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
droEre2
CCTTGAAAAGAAGTCTGTGCGAGAACTAGCAGCGGGTCTCAACAGAATGGGTAAGTTGTT--CACTATG-CATGCGCATGAGTAG-----------TAGCT--TGAAAATGCCTGC-----CC-AG-------------CACCTAC---CTC---ATCTGT---TAGTAGA---AGT--GATGCAACCTCTTT-----TGAC------TTCC-GTT--GTTTTGTATCTT--ATTTATTTTCATATTTT-----------------GATTTGTTGTAC---TC-----GTT-ACCCGT------------------------------------------AA------------AGAACTCCCCCTAAAGCCGCCCGTTATGCCAAGAACCTTGCTGAA------CGTGGCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................A---AGT--GATGCAACCTCTTT-----TGAC------TTCC-GC.....................................................................................................................................................................................................2811.0010000001
..........................................................................................................................................................................................................................................................................................................................................................................................TATGCCAAGAACCTTGCTGAA------CGTGGC.2711.0011000000
........................ACTAGCAGCGGGTCTCAACAGAA.............................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
................GTGCGAGAACTAGCAGCGG.........................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
................GTGCGAGAACTAGCAGCGGG........................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000

Generated: 05/17/2015 at 04:26 AM