ID:

dvi_688

 Coordinate:

scaffold_10324:202088-202238 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.5 -9.5 -9.4

Flybase annnotation

CDS [Dvir\GJ15055-cds]; exon [dvir_GLEANR_15358:7]; intron [Dvir\GJ15055-in]

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+
mature
star
  1. dvi_688  scaffold_10324:202108-202127 +
  2. scaffold_12726:1377809-1377828 +
  3. scaffold_12855:6718896-6718915 +
  4. scaffold_12875:9838962-9838981 +
  5. scaffold_12875:10846221-10846240 +
  6. scaffold_12875:13741227-13741246 +
  7. scaffold_12928:4101560-4101579 +
  8. scaffold_12963:6111949-6111968 +
  9. scaffold_12970:3775042-3775061 -
  10. scaffold_12970:4927115-4927134 +
  11. scaffold_12970:5253257-5253276 +
  12. scaffold_12970:7054598-7054617 +
  13. scaffold_13047:5515869-5515888 -
  14. scaffold_13047:8714698-8714717 +
  15. scaffold_13047:15924393-15924412 +
  16. scaffold_13049:7713787-7713806 +
  17. scaffold_13049:14038967-14038986 +
  18. dvi_19920  scaffold_13049:14058851-14058870 -
  19. scaffold_13049:21667840-21667859 +
  20. scaffold_13324:2942353-2942372 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATTCGCAAATGCATTTTGCACAAAGCGTGAAGAAGAAGCAGAAACACAGACGCAGCCGTGCGGTCGTATGTGTGTGTGCGTGCGTGTGTATGTGTTTATGTATGTGTGCCAGTCAGAACTTTATACAGGGTTGTTAATCGACTTAACATGTTTGTTTTGCCTACCCCCCCCCCCCCTCCCTCACTCATTCAATCGGTGCAGTTGTCCAATCAGGAGCAGGCAAAGCAGCTGCAGACGGCGCAGCAGCAGGT
**********************************************************************((..((.(((((((((((((......)))))))))))))))..))................************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total V053
head
 M047
female body
 M028
head
 GSM1528803
follicle cells		 M027
male body		 SRR060682
9x140_0-2h_embryos_total
 SRR060660
Argentina_ovaries_total
 SRR060667
160_females_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
................................................................................................................TAAGAACATTATACAGGGTTCTT.................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GAGAAGGCAAAGCAGCTGCTGACG.............. 24 2 1 1.00 1 0 0 0 1 0 0 0 0 0
................................................................................................................TAGGAACTTTATACAGGGTTCT..................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................GTCAGAACTTTATACAGGGT........................................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................AGGCAAAGCAGCTGCTGACG.............. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................TAGGAACTTTATACAGGGCTGT..................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CTCCGTGACTCATTGAATC......................................................... 19 3 10 0.30 3 0 0 1 0 2 0 0 0 0
...................ACCAAGTGTGAAGAAGAA...................................................................................................................................................................................................................... 18 2 10 0.10 1 0 0 0 0 0 1 0 0 0
............................................................................TGCGTGCGTGTGTATGTGTCT.......................................................................................................................................................... 21 1 19 0.05 1 0 1 0 0 0 0 0 0 0
......................................................................TGTGTGTGCGTGCGTGTGTA................................................................................................................................................................. 20 0 20 0.05 1 0 0 0 0 0 0 0 1 0
....................................................................TGTGTGTGTGCGTGCGTG..................................................................................................................................................................... 18 0 20 0.05 1 0 0 0 0 0 0 1 0 0
.................................................................GTATGTGTGTGTGCGTCC........................................................................................................................................................................ 18 1 20 0.05 1 0 1 0 0 0 0 0 0 0
.........................................................................................ATGTGTTTATATAAGTGAGCC............................................................................................................................................. 21 3 20 0.05 1 0 0 0 0 0 0 0 0 1
................................................................................................................................................................................................................ATGAGGAGCGGGCAAAGCC........................ 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

TAAGCGTTTACGTAAAACGTGTTTCGCACTTCTTCTTCGTCTTTGTGTCTGCGTCGGCACGCCAGCATACACACACACGCACGCACACATACACAAATACATACACACGGTCAGTCTTGAAATATGTCCCAACAATTAGCTGAATTGTACAAACAAAACGGATGGGGGGGGGGGGGAGGGAGTGAGTAAGTTAGCCACGTCAACAGGTTAGTCCTCGTCCGTTTCGTCGACGTCTGCCGCGTCGTCGTCCA
************************************************************************************************************************((..((.(((((((((((((......)))))))))))))))..))................********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M027
male body		 V053
head
 SRR060683
160_testes_total
 SRR060663
160_0-2h_embryos_total
 M061
embryo
 V047
embryo
 SRR060675
140x9_ovaries_total
 SRR060667
160_females_carcasses_total
 M028
head
 SRR060658
140_ovaries_total
 SRR060689
160x9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060660
Argentina_ovaries_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060685
9xArg_0-2h_embryos_total
..............................................................................................................................................................................GGAGTGAGTCGGTAAGTTAGC........................................................ 21 3 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................GGAGGGATTCGGTAAGTTAGC........................................................ 21 3 2 1.50 3 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................GGAGGGATTCGGTAAGTTAG......................................................... 20 3 3 1.33 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................GGGAGTGAGTGAGTAAGTTAGCCATC.................................................... 26 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................CGGAGGGAGTCGGTAAGTTAGCCA...................................................... 24 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................GGAGGGATTCGGTAAGTTAGCC....................................................... 22 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................GGAGTCGGTAAGTTAGCCATG.................................................... 21 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................GGATTCGGTAAGTTAGCCA...................................................... 19 3 20 0.40 8 1 4 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................TGATTCAGTAAGTTAGCCACG.................................................... 21 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................GAGGGATTCGGTAAGTTAGC........................................................ 20 3 9 0.22 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TGGAGTGATTAAGTTAGC........................................................ 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................GTCTGCAGCGTCGTCGTCTA 20 2 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CAGGGAGTGAGTAAGTTT.......................................................... 18 2 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................GGAGGGATTCGGTAAGTTA.......................................................... 19 3 16 0.13 2 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................GAGTGAGTCGGTAAGTTAGCCA...................................................... 22 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GGGATTCGGTAAGTTAGCCA...................................................... 20 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................GAGTGATTGGGTAAGTTAG......................................................... 19 3 20 0.10 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................GAGTCGGTAAGTTAGCCATG.................................................... 20 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................GAGTGATTGGGTAAGTTAGC........................................................ 20 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TGGCTACGTCAACAGGTT.......................................... 18 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................GATTCAGTAAGTTAGCCATG.................................................... 20 3 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CATACAGACGGTCAGATTTG.................................................................................................................................... 20 3 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................AAAAATTAGCTGAATTGAA...................................................................................................... 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................................TGAGTCTTAGAATATGTCC.......................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................ACACACACGCACGCACACAT................................................................................................................................................................. 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................CACGCACGCACACATACAC............................................................................................................................................................. 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_10324:202038-202288 + dvi_688 ATTCGCAAATGCATTTTGCACAAAGC--GTGAAGAA--------------------GAAGCAGAAA--CAC------------------------------------------AG---ACGCAGCCG-TGCGGTCGT--------ATGT-------------------------------------------------------------GTGTGT--GCGTGCGTGT---------GT--ATGTGTT--TA------TGTATGTGTGCCAGTCA----------------------GAACT------------------T------------------------------TATAC---------------A-GGG------TTGTTAA---------------TCGA----CTTA----------------------------------------ACATGTT-----------------------T-------------------------------GT--------------------------------------------------------T----------------------TTGCCTA-C-----------CCCCCCCCCCCCTC-CCT---------------CACTCATTCAATCGGTGCAGTTGT--------------------------------C----------------------------CAATCAGGAGCAGGCAAAG---CAGCTGCAGACGGCGCAG--------------CAGCA-----------------------GGT
droMoj3 scaffold_6540:5250134-5250377 + GTTTGCAGA---------------------G-------------------C-ACAGCAAGCATGCATA------------------TAGACAATACAGATGC---------------------------------------------------------------------------------------------------GATGTATGTGTGTAA--GTGTA------------GTGTGTG--------AGTGTGTTTGTATATG----------------------------------TG------------------TCAGCAGCAACAACAACAGAGCTGACAGCCACGAATTAAAGTGAGCCAAAGCATTGCAAGCCAAG----------------------C------CGACT----------------------------------------TT-------TTGTTGATTGACCT--------------------------------------TAAGCAAAAGTTTGCACAATG------------------------------------------------------------------------------------------------------------------------------------------CCAG--------------------------CAACAG---C-----------------AGCAGCAGCAG------------CAGCAGTAGCAGTAGCAG--------------CAGCA-----------------------GTA
droGri2 scaffold_15245:11451245-11451483 + GAAGACG-------------------------------------------A-AGAAGTAGCGCA---------------------------------AGATCAA---------CTTAGTTA---------------TGTATCCCTTTGT-------------------------------------------------------------GTGTGTGAGTATG-------------TGTGTGTGTG----TGCT----------TG------------------------------TTCCCC------------------T------------------------------CGAGT---------------TAGGGCTCAATGTT----------------------G------CTGAG-------------------------------------------------------------------------------------------------------------------CGTTCTCCC-----CCCGTGTATTTTGTCGCCTCTTTTGTGCGGATGAGTTGC---------------------TGTTCACGCGT-------------CGTAAACTCGGTAGCC--------------GATG-------------CCAA-------------------------ACAGGCG---CTACAACAAAGACAATGGAAGAGCAG---------------------------CAGCAA--------------CAGCA-----------------------GGA
droWil2 scf2_1100000004902:12135883-12136022 - AAAAGGG-------------------------------------------A-AAGGAAAGGAGGAACA------------------AACACAATACATGGCGGG---------TGTAATTG---------------TGTGCCTGTGTGT-------------------------------------------------------------GTGTGT--GTGTG-----------TGTGTGTGGGCG----GG----------TGGGTGTTTGTAAGGT---------------------------------------------------------------------------------------------AGTTGGTAAATATT----------------------T------TAAAG----------------------------------------TT-------TTTTTATTTTGCCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 2:14312332-14312529 + GTG-----------------------------------------------------------------------------------------------------------------------------------------------TGT-------------------------------------------------------------GTGTGT--GTGTGCGTGT---------GC--GTATGTG--TA----------TGTT------------------------------------GGTTTTGACCCATGTGTGT-----------------------------------------------------------------------------------GTTTTA-------------------------------------------------------------------------TATGCTACA--TCCAGGCCACCATGCTGAAGAAA----ACG-AAGAGTAAGCGCCGCCTCACGGAGCCGCATATCTCGCCAGCGGTCCTG---------------------------------------------------------------------------AGTC--------TCTCTG-TGGCACAGT--------------------------------C----------------------------GCAGCAGGCG---------------CAGGCACAACAGCAT--------------CAGCA-----------------------GCA
droPer2 scaffold_2:2049405-2049578 - CATGGC------------------------------------------------------------------------------------------T------------------------------CTGCA---------------------------------------------------------------------GGTGCGTGTGTGTGT--GTGTT-----------TGTGTGTG--------AGTGTGTGCGAAAGCG--TGCGAAAGAGCGCGAAAATGTAGGTTAGTTTCCG------------------T------------------------------TGT------------------------------------------------------------------------------------GTCCCCC--------------------------------------------------------------------------------------------------------------CACTCCTCTCCGCTCTTC---------------------------------------------------------------------------ACTCTCCGCA--------------------------------------CTCCGCACTCTTCCT----TT------------------------CTTGCG--CTAT--------------CCTACAGCAG--------------CAGCA-----------------------GCA
droAna3 scaffold_13117:2628932-2629160 - ACTGGGAAATATT--TT---TCCAGCAAGCCG--GCTTGCATAGGGGGCGGAGGGCGTGGCGGA---------------------------------GG-----GATCA-------AGGGA-----T-GTG--TCTT--------AAGT-----------------------------------------------------------GTGTGTGA--GTGTG-----------CGTGTGTG--TCGT--GGTG------------------------------------------TGTGTG------------------TG----GC---------------------------------------------------------------------------------------------------------------------TTTGGGGCGCGTGCTTTG-----CGTT--------------------------------------------------------------------------------------------------------TGCGCAGCGGCAACGTTCTGAGTTCGTT-TGCCG-------------------C-----CC-----------GACGCTCGCATTTCA------------------------------------------------------------ATG-----------GCAGCAGCGG---------------CAGTGGCAGCGGCAG--------------TGGCA-----------------------GCG
droBip1 scf7180000396708:1095808-1096090 + ATTCATAAACATT--ATGTAATCAGATAATGAAAAA--------------------AAACCATAAA--CTT------------------------------------------TG---TAGTGTTCT-CTCT---------------------------------------------------------------------GTTTAATGTGTGTGA--GTGTG-----------CGTGCGAG--------TGTA----------TG--TT--------------------------TTTGTCGGATTTGAC-AATGTGTGT-----------------------------------------------------------------------------------GT---------------------------------------------------------------------------TTTATGCTACA--TCCAGGCCACCATGCTGAAGAAA----ACG-AAGAGTAAGCGCCGCCTCACCGAGCCGCATATCTCGCCGGCGGTCTTG---------------------------------------------------------------------------AGCC--------TGTCGG------TGGTGCAACAGCAACAGCAGAGCTCCCCGCAGTCCCAAT----CG---------------------------------------------CAGTCGCAGTCCCAG--------------CAGCA-----------------------ACT
droKik1 scf7180000302517:1173658-1173803 - GTG-----------------------------------------------------------------------------------------------------------------------------------------------TGT-------------------------------------------------------------GTGTCT--GCGTGCGTGT---------GT--ATGTGCA--GA----------TACAA-TTTGTAA-------------------------------------------------------------------------------------------------TGATACACAAATTA---GTATCCTAAATGGATGCTTAATAGCCTGCTTCAC------TGCCTCCATGCCTCCTCG----------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------CCCCCCAGCCCTTC-TTC---------------CACACCCCCCA----------------------------------------------------------------------------------------------------------------------------------TTG-----------------------GTG
droFic1 scf7180000454106:1248920-1249087 + AAATACAGACG-----------------------------------------------------------------------------------------------------------------------C--TCGT--------GTGT-------------------------------------------------------------GTGTGT--GTGTGTGTGT---------GC--GTGTGGG--TG----------GGTG--GGTGCACGGG---------------------------------------------------------------------------------------------TGTGGCCATAATTTATGCCCAGACTAAGT----GC-----------------ATTATG----------T------TTGGAGCTCGAGCTTTT-----------------------A-------------------------------GT--------------------------------------------------------T----------------------GCCCCTG-C-----------CCCCCTTTCCC-----CC-----------GGCAGACTCAATTATTTGTGGCAATTG---------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491023:1669036-1669205 - TGTG------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------GTGTGT--GTGTGTGTGT---------TT--GTGTGCG--TG----------CGTGTCC-TGTTC---------------------T-TTTG------------------TT----AC-------------------------------------------A-A-----CGATT--------------------------------TTTGCGCAATTTC----------T-----------------------------------------TTTGTGCTT--------------------------------------------------------------------------------------TGTGCAGCCGC---------------------CGCCGACGCTT-------------C-CATTTTCCATTGCC--------------GCTGTCATAACTGTCG----------------------------------------------------------CTCCACGACAG---------------CAGCAACAGCAACAG--------------CAACA-----------------------GCA
droRho1 scf7180000778065:1055-1171 + TGTCGG----------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------------------------------GC--AGTTGG--ATGTG----AAATGTAC----------------------------GTATCCTACTA----------------------TTTACT------------------T------------------------------TGGAC---------------A-AAG------TTTTCAA---------------CGAA----CTCT----------------------------------------GCTTTAT-----------------------T-------------------------------CC--------------------------------------------------------A----------------------TCCCCCA-T-----------CCCCCCTCCCCCTC-CCA---------------GATGCACCCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000301345:17488-17600 - TCA-------------------------------------------------------------------------------------------------------------------------------------T--------GTGT---------------------------------------------------------GTGGGTGTGT--GTGTG-----------T--GT--GTGTG----TGTG----TGTGTGTGTGCCCGCCAGGA---------------------------------------------------------------------------------------------TGGGGGCATAAATTA---GCACAATCAAC------------------G----------------------------------------TATT-----------------------G-------------------------------TT--------------------------------------------------------T----------------------TCGCCCT-G-----------CCACGCCCCCGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCC
droTak1 scf7180000413903:77174-77275 + ATTTAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTGCTGTGTTTTCTC----------T-----------------------------------------CC------------------------------------------------------------------------------------------------------------------TTTCG---C-------------------C---C-----CC-----------ACTGGTCGTACAGGG--------------------------------------GCCTCGAGCA---GCTGC-----------------CGCA---------GTATGCC------AAGCAGGTGGCGCAG--------------CTGCA-----------------------GCA
droEug1 scf7180000409466:2359370-2359503 + CAAATGCAA-----AATGCAAAATGCAAATGC--AA--------------------AATCCAAATG--CACAGACACAGATGCAAT------------------AATCAAAATGA---AAGCA---C-TGCC---------------------------------------------------------------------TTTGTGTGTGTGTGT--GTGTG--TGA---------GC--AAAAGTGTGAGTT--------TGTG----------------------------------TG------------------TC-----------------------------------------------------------------------------------T------------------------------------TTCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------ATT
dm3 chrX:8293264-8293447 + GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGTTTGTGTGTGT--GTGTG-----------TGTGC--G--------AGTG------------------------------------------TGTATG------------------TG----AAGA-----------------------------------------AAAAGC----------------------------------CGCACACTGCGAAAATTT----------T-----------------------------------------CC------------------------------------------------------------------------------------------------------------------TTTCCTT-T-------------------C---C-----CC-----------AACGGTCGAATATAACCGCTAAAATTGTGG----------------------------------------------------------AAAAACAGGAGAAAACCCCCAAGC---G-------------GAAGAAGAAGACTGCAGCCAGTAAAATGTCTGCAGTTTATTCGCC
droSim2 x:7864007-7864192 + GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGTGTGTGTGTGT--GTGTG-----------CGTGCGTG--------AGTG------------------------------------------TGTATG------------------TG----AAGA-----------------------------------------AAAAGC----------------------------------CGCACACTGCGAAAATTT----------T-----------------------------------------CC------------------------------------------------------------------------------------------------------------------TTTCCTT-T-------------------C---C-----CC-----------AACGGTCGAATATAACCGCTAAAATTGTGG----------------------------------------------------------AAAAACAGGAGAAAACCCCCAAGC---G-------------GAAGAAGAAGACTGCAGCCAGTAAAATGTCTGCAGTTTATTCGCC
droSec2 scaffold_35:142899-143084 + GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGTGTGTGTGTGT--GTGTG-----------CGTGCGTG--------AGTG------------------------------------------TGTATG------------------TG----AAGA-----------------------------------------AAAAGC----------------------------------CGCACACTGCGAAAATTT----------T-----------------------------------------CC------------------------------------------------------------------------------------------------------------------GTTCCTT-T-------------------C---C-----CC-----------AACGGTCGAATATAACCGCTAAAATTGTGG----------------------------------------------------------AAAAACAGGAGAAAACCCCCAAGC---G-------------GAAGAAGAAGACTGCAGCCAGTAAAATGTCTGCAGTTTATTCGCC
droYak3 X:13020726-13020994 - AAAAAAAG--------------------------------------------GAGAAAAGA-------------------------TAGCCACTTCT------------------------------TTGCCCGTGT--------ACGTGTGCGTGTGTTTGCGTGTCTTTACTTAGTGTGTGTGTGTGCCAGCGCTCGCGGTTGTGTGCGTGCGT--GTGTG---------------------------TGTG------------------------------------------TGTATG------------------TG----AAAA-----------------------------------------AAACGC----------------------------------CGCACACTGCGAAAATTT----------T-----------------------------------------CC------------------------------------------------------------------------------------------------------------------TTTCCTT-T-------------------C---C-----CC-----------AACGGTCGAATATAACCGCTAAAATTGTGG----------------------------------------------------------AAAAACAGGAGAAAACCCCCAAGC---G-------------GAAGAAGAAGACTGCAGCCAGTAAAATGTCTGCAGTTTACTCGCC
droEre2 scaffold_4929:18157182-18157405 + CGCG------------------------------------------------------------------------------------------------------------------------------CACTCGT--------ATGTGTTTGCATAGTTGGGTGTTTAAGCATATTACCCGTA----------------GATATGTGTGCCT-----------------------GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATC------CGTCCATATGCCTGTCCGTCGGCCCCG-----TTCGATTTATTTGTCCGCGCTCCACAACAAAGACTCATAATAATCTGTTGGGCCAAT--CAAG-TAAAATATGCGCGAGA------------------------------------------------------------------------------------------------------------------------------------------TCAG-------------------------TCAACTA---C-----------------AAAAACAAGAGCAA------------AAGTAAAG--CACAG---CA---------AAGCA-----------------------ACT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ATTCGCAAATGCATTTTGCACAAAGC--GTGAAGAA--------------------GAAGCAGAAA--CAC------------------------------------------AG---ACGCAGCCG-TGCGGTCGT--------ATGT-------------------------------------------------------------GTGTGT--GCGTGCGTGT---------GT--ATGTGTT--TA------TGTATGTGTGCCAGTCA----------------------GAACT------------------T------------------------------TATAC---------------A-GGG------TTGTTAA---------------TCGA----CTTA----------------------------------------ACATGTT-----------------------T-------------------------------GT--------------------------------------------------------T----------------------TTGCCTA-C-----------CCCCCCCCCCCCTC-CCT---------------CACTCATTCAATCGGTGCAGTTGT--------------------------------C----------------------------CAATCAGGAGCAGGCAAAG---CAGCTGCAGACGGCGCAG--------------CAGCA-----------------------GGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................GTCA----------------------GAACT------------------T------------------------------TATAC---------------A-GGG------T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................T-------------------------------------------------------------GTGTGT--GCGTGCGTGT---------GT--A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................TGT-------------------------------------------------------------GTGTGT--GCGTGCGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000010000000000000000000000000000000000000000000000000000
droMoj3
GTTTGCAGA---------------------G-------------------C-ACAGCAAGCATGCATA------------------TAGACAATACAGATGC---------------------------------------------------------------------------------------------------GATGTATGTGTGTAA--GTGTA------------GTGTGTG--------AGTGTGTTTGTATATG----------------------------------TG------------------TCAGCAGCAACAACAACAGAGCTGACAGCCACGAATTAAAGTGAGCCAAAGCATTGCAAGCCAAG----------------------C------CGACT----------------------------------------TT-------TTGTTGATTGACCT--------------------------------------TAAGCAAAAGTTTGCACAATG------------------------------------------------------------------------------------------------------------------------------------------CCAG--------------------------CAACAG---C-----------------AGCAGCAGCAG------------CAGCAGTAGCAGTAGCAG--------------CAGCA-----------------------GTASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAG------------CAGCAGTAGCAGTAGC...............................................26110.091000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---C-----------------AGCAGCAGCAG------------CAGCAGTAGCA....................................................24200.051100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG------------CAGCAGTAGCAGTA.................................................19200.051000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAG------------CAGCAGTAGC.....................................................20200.051100000
................................................................................................................................................................................................................................................................................................................................TCAGCAGCAACAACAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---C-----------------AGCAGCAGCAG------------CAGCAGTAGCAG...................................................26200.051100000
droGri2
GAAGACG-------------------------------------------A-AGAAGTAGCGCA---------------------------------AGATCAA---------CTTAGTTA---------------TGTATCCCTTTGT-------------------------------------------------------------GTGTGTGAGTATG-------------TGTGTGTGTG----TGCT----------TG------------------------------TTCCCC------------------T------------------------------CGAGT---------------TAGGGCTCAATGTT----------------------G------CTGAG-------------------------------------------------------------------------------------------------------------------CGTTCTCCC-----CCCGTGTATTTTGTCGCCTCTTTTGTGCGGATGAGTTGC---------------------TGTTCACGCGT-------------CGTAAACTCGGTAGCC--------------GATG-------------CCAA-------------------------ACAGGCG---CTACAACAAAGACAATGGAAGAGCAG---------------------------CAGCAA--------------CAGCA-----------------------GGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCAG---------------------------CAGCAA--------------CAGCA-----------------------...19120.08110
..........................................................................................................................................................................................................................GTATG-------------TGTGTGTGTG----TGCT----------TG------------------------------T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22130.08110
droWil2
AAAAGGG-------------------------------------------A-AAGGAAAGGAGGAACA------------------AACACAATACATGGCGGG---------TGTAATTG---------------TGTGCCTGTGTGT-------------------------------------------------------------GTGTGT--GTGTG-----------TGTGTGTGGGCG----GG----------TGGGTGTTTGTAAGGT---------------------------------------------------------------------------------------------AGTTGGTAAATATT----------------------T------TAAAG----------------------------------------TT-------TTTTTATTTTGCCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................GTGGGCG----GG----------TGGGTGTTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
dp5
GTG-----------------------------------------------------------------------------------------------------------------------------------------------TGT-------------------------------------------------------------GTGTGT--GTGTGCGTGT---------GC--GTATGTG--TA----------TGTT------------------------------------GGTTTTGACCCATGTGTGT-----------------------------------------------------------------------------------GTTTTA-------------------------------------------------------------------------TATGCTACA--TCCAGGCCACCATGCTGAAGAAA----ACG-AAGAGTAAGCGCCGCCTCACGGAGCCGCATATCTCGCCAGCGGTCCTG---------------------------------------------------------------------------AGTC--------TCTCTG-TGGCACAGT--------------------------------C----------------------------GCAGCAGGCG---------------CAGGCACAACAGCAT--------------CAGCA-----------------------GCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTC--------TCTCTG-TGGCACAGT--------------------------------C----------------------------GC...................................................................................2111.0010010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGCG---------------CAGGCACAACAGC...............................................2011.0010100000000
....................................................................................................................................................................................................................GTGT--GTGTGCGTGT---------GC--GTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1950.2010100000000
droPer2
CATGGC------------------------------------------------------------------------------------------T------------------------------CTGCA---------------------------------------------------------------------GGTGCGTGTGTGTGT--GTGTT-----------TGTGTGTG--------AGTGTGTGCGAAAGCG--TGCGAAAGAGCGCGAAAATGTAGGTTAGTTTCCG------------------T------------------------------TGT------------------------------------------------------------------------------------GTCCCCC--------------------------------------------------------------------------------------------------------------CACTCCTCTCCGCTCTTC---------------------------------------------------------------------------ACTCTCCGCA--------------------------------------CTCCGCACTCTTCCT----TT------------------------CTTGCG--CTAT--------------CCTACAGCAG--------------CAGCA-----------------------GCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
ACTGGGAAATATT--TT---TCCAGCAAGCCG--GCTTGCATAGGGGGCGGAGGGCGTGGCGGA---------------------------------GG-----GATCA-------AGGGA-----T-GTG--TCTT--------AAGT-----------------------------------------------------------GTGTGTGA--GTGTG-----------CGTGTGTG--TCGT--GGTG------------------------------------------TGTGTG------------------TG----GC---------------------------------------------------------------------------------------------------------------------TTTGGGGCGCGTGCTTTG-----CGTT--------------------------------------------------------------------------------------------------------TGCGCAGCGGCAACGTTCTGAGTTCGTT-TGCCG-------------------C-----CC-----------GACGCTCGCATTTCA------------------------------------------------------------ATG-----------GCAGCAGCGG---------------CAGTGGCAGCGGCAG--------------TGGCA-----------------------GCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................AGT-----------------------------------------------------------GTGTGTGA--GTGTG-----------CGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.331100000
droBip1
ATTCATAAACATT--ATGTAATCAGATAATGAAAAA--------------------AAACCATAAA--CTT------------------------------------------TG---TAGTGTTCT-CTCT---------------------------------------------------------------------GTTTAATGTGTGTGA--GTGTG-----------CGTGCGAG--------TGTA----------TG--TT--------------------------TTTGTCGGATTTGAC-AATGTGTGT-----------------------------------------------------------------------------------GT---------------------------------------------------------------------------TTTATGCTACA--TCCAGGCCACCATGCTGAAGAAA----ACG-AAGAGTAAGCGCCGCCTCACCGAGCCGCATATCTCGCCGGCGGTCTTG---------------------------------------------------------------------------AGCC--------TGTCGG------TGGTGCAACAGCAACAGCAGAGCTCCCCGCAGTCCCAAT----CG---------------------------------------------CAGTCGCAGTCCCAG--------------CAGCA-----------------------ACTSizeHit CountTotal NormTotal
No Reads
droKik1
GTG-----------------------------------------------------------------------------------------------------------------------------------------------TGT-------------------------------------------------------------GTGTCT--GCGTGCGTGT---------GT--ATGTGCA--GA----------TACAA-TTTGTAA-------------------------------------------------------------------------------------------------TGATACACAAATTA---GTATCCTAAATGGATGCTTAATAGCCTGCTTCAC------TGCCTCCATGCCTCCTCG----------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------CCCCCCAGCCCTTC-TTC---------------CACACCCCCCA----------------------------------------------------------------------------------------------------------------------------------TTG-----------------------GTGSizeHit CountTotal NormTotal
No Reads
droFic1
AAATACAGACG-----------------------------------------------------------------------------------------------------------------------C--TCGT--------GTGT-------------------------------------------------------------GTGTGT--GTGTGTGTGT---------GC--GTGTGGG--TG----------GGTG--GGTGCACGGG---------------------------------------------------------------------------------------------TGTGGCCATAATTTATGCCCAGACTAAGT----GC-----------------ATTATG----------T------TTGGAGCTCGAGCTTTT-----------------------A-------------------------------GT--------------------------------------------------------T----------------------GCCCCTG-C-----------CCCCCTTTCCC-----CC-----------GGCAGACTCAATTATTTGTGGCAATTG---------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TGTG------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------GTGTGT--GTGTGTGTGT---------TT--GTGTGCG--TG----------CGTGTCC-TGTTC---------------------T-TTTG------------------TT----AC-------------------------------------------A-A-----CGATT--------------------------------TTTGCGCAATTTC----------T-----------------------------------------TTTGTGCTT--------------------------------------------------------------------------------------TGTGCAGCCGC---------------------CGCCGACGCTT-------------C-CATTTTCCATTGCC--------------GCTGTCATAACTGTCG----------------------------------------------------------CTCCACGACAG---------------CAGCAACAGCAACAG--------------CAACA-----------------------GCASizeHit CountTotal NormTotal
No Reads
droRho1
TGTCGG----------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------------------------------GC--AGTTGG--ATGTG----AAATGTAC----------------------------GTATCCTACTA----------------------TTTACT------------------T------------------------------TGGAC---------------A-AAG------TTTTCAA---------------CGAA----CTCT----------------------------------------GCTTTAT-----------------------T-------------------------------CC--------------------------------------------------------A----------------------TCCCCCA-T-----------CCCCCCTCCCCCTC-CCA---------------GATGCACCCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TCA-------------------------------------------------------------------------------------------------------------------------------------T--------GTGT---------------------------------------------------------GTGGGTGTGT--GTGTG-----------T--GT--GTGTG----TGTG----TGTGTGTGTGCCCGCCAGGA---------------------------------------------------------------------------------------------TGGGGGCATAAATTA---GCACAATCAAC------------------G----------------------------------------TATT-----------------------G-------------------------------TT--------------------------------------------------------T----------------------TCGCCCT-G-----------CCACGCCCCCGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCSizeHit CountTotal NormTotal
No Reads
droTak1
ATTTAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTGCTGTGTTTTCTC----------T-----------------------------------------CC------------------------------------------------------------------------------------------------------------------TTTCG---C-------------------C---C-----CC-----------ACTGGTCGTACAGGG--------------------------------------GCCTCGAGCA---GCTGC-----------------CGCA---------GTATGCC------AAGCAGGTGGCGCAG--------------CTGCA-----------------------GCASizeHit CountTotal NormTotal
No Reads
droEug1
CAAATGCAA-----AATGCAAAATGCAAATGC--AA--------------------AATCCAAATG--CACAGACACAGATGCAAT------------------AATCAAAATGA---AAGCA---C-TGCC---------------------------------------------------------------------TTTGTGTGTGTGTGT--GTGTG--TGA---------GC--AAAAGTGTGAGTT--------TGTG----------------------------------TG------------------TC-----------------------------------------------------------------------------------T------------------------------------TTCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------ATTSizeHit CountTotal NormTotal
No Reads
dm3
GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGTTTGTGTGTGT--GTGTG-----------TGTGC--G--------AGTG------------------------------------------TGTATG------------------TG----AAGA-----------------------------------------AAAAGC----------------------------------CGCACACTGCGAAAATTT----------T-----------------------------------------CC------------------------------------------------------------------------------------------------------------------TTTCCTT-T-------------------C---C-----CC-----------AACGGTCGAATATAACCGCTAAAATTGTGG----------------------------------------------------------AAAAACAGGAGAAAACCCCCAAGC---G-------------GAAGAAGAAGACTGCAGCCAGTAAAATGTCTGCAGTTTATTCGCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGC---G-------------GAAGAAGAAGACTGCAGCCAG........................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAAATTGTGG----------------------------------------------------------AAAAACAGGAGAAA........................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................TGTG-----------TGTGC--G--------AGTG------------------------------------------TGTATG------------------TG----AAGA-----------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................G-----------TGTGC--G--------AGTG------------------------------------------TGTATG------------------TG----A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
......................................................................................................................................................................................................................................................................................................................................................................................AGC----------------------------------CGCACACTGCGAAAA............................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGAAAACCCCCAAGC---G-------------GA...........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCCCCAAGC---G-------------GAAGAAGAAGACT................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATAACCGCTAAAATTGTGG----------------------------------------------------------AAA...................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................GC--G--------AGTG------------------------------------------TGTATG------------------TG----AAGA-----------------------------------------AAAAGC----------------------------------CG.........................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACTGCAGCCAGTAAAAT..................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACCCCCAAGC---G-------------GAAGAAGAAGAC.................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGG----------------------------------------------------------AAAAACAGGAGA..........................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGTGG----------------------------------------------------------AAAAACAGGAGAAAACC.....................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGG----------------------------------------------------------AAAAACAGGAGAAA........................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGC---G-------------GAAGAAGAAGACTG...............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTGTGG----------------------------------------------------------AAAAACAGGAG...........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGG----------------------------------------------------------AAAAACAGGAGAAAAC......................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTT----------T-----------------------------------------CC------------------------------------------------------------------------------------------------------------------TTTCCTT-T-------------------C---C-----CC-----------AAC...........................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGCTAAAATTGTGG----------------------------------------------------------AAAAAC................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................TGTG-----------TGTGC--G--------AGTG------------------------------------------TGTATG------------------TG----AAGA-----------------------------------------A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCCCAAGC---G-------------GAAGAAGAAG...................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGG----------------------------------------------------------AAAAACAGGAGAAAACCCCCA.................................................................2711.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................C--G--------AGTG------------------------------------------TGTATG------------------TG----AAGA-----------------------------------------AAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGC---G-------------GAAGAAGAAGACTGCAGC...........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGC---G-------------GAAGAAGAAGACTGC..............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................GT--GTGTG-----------TGTGC--G--------AGTG------------------------------------------TGTAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...........................................................................................................................................................................................................................TGTG-----------TGTGC--G--------AGTG------------------------------------------TGTAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...............................................................................................................................................................................................................TGTGTGTGT--GTGTG-----------TGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000
..........................................................................................................................................................................................................TTGTTTGTGTGTGT--GTGTG-----------T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.2550000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000200000
...................................................................................................................................................................................................................TGTGT--GTGTG-----------TGTGC--G--------AGTG------------------------------------------T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.2550000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000010000100000000000
...............................................................................................................................................................................................................TGTGTGTGT--GTGTG-----------TGTGC--G--------AGTG------------------------------------------TG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26140.2130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000100010000000
..........................................................................................................................................................................................................TTGTTTGTGTGTGT--GTGTG-----------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................TGTG-----------TGTGC--G--------AGTG------------------------------------------TGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................TTGTGTGTGT--GTGTG-----------TGTGC--G--------A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2260.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.....................................................................................................................................................................................................................TGT--GTGTG-----------TGTGC--G--------AGTG------------------------------------------TGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000100000100000
.....................................................................................................................................................................................................................TGT--GTGTG-----------TGTGC--G--------AGTG------------------------------------------T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000001000
..............................................................................................................................................................................................................TTGTGTGTGT--GTGTG-----------TGTGC--.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1530000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
............................................................................................................................................................................................................GTTTGTGTGTGT--GTGTG-----------TGTGC--G--------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2370.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
................................................................................................................................................................................................................GTGTGTGT--GTGTG-----------TGTGC--G--------AGTG------------------------------------------TG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25170.1220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000100000000000000
..................................................................................................................................................................................................................GTGTGT--GTGTG-----------TGTGC--G--------AGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000
.....................................................................................................................................................................................................................TGT--GTGTG-----------TGTGC--G--------AGTG------------------------------------------TG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000001000
..........................................................................................................................................................................................................TTGTTTGTGTGTGT--GTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................GTTTGTGTGTGT--GTGTG-----------TGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................TTTGTGTGTGT--GTGTG-----------TGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000100000000000000000000000
..........................................................................................................................................................................................................TTGTTTGTGTGTGT--GTGTG-----------TGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..............................................................................................................................................................................................................TTGTGTGTGT--GTGTG-----------TGTGC--G--------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................TGTGTGT--GTGTG-----------TGTGC--G--------AGTG------------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................TGTGT--GTGTG-----------TGTGC--G--------AGTG------------------------------------------TGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................GTGT--GTGTG-----------TGTGC--G--------AGTG------------------------------------------TG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
...........................................................................................................................................................................................................TGTTTGTGTGTGT--GTGTG-----------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................................................T--GTGTG-----------TGTGC--G--------AGTG------------------------------------------TG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................GTTGTTTGTGTGTGT--GTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................TGTGTGT--GTGTG-----------TGTGC--G--------AGTG------------------------------------------TG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...................................................................................................................................................................................................................TGTGT--GTGTG-----------TGTGC--G--------AGTG------------------------------------------TG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.......................................................................................................................................................................................................................T--GTGTG-----------TGTGC--G--------AGTG------------------------------------------TGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................GTGTGTGT--GTGTG-----------TGTGC--G--------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................TGTGT--GTGTG-----------TGTGC--G--------AG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................TGT--GTGTG-----------TGTGC--G--------AGTG------------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
..............................................................................................................................................................................................................TTGTGTGTGT--GTGTG-----------TG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TGTTTGTGTGTGT--GTGTG-----------TGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................GTGTGTGT--GTGTG-----------TGTGC--G--------A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGTGTGTGTGTGT--GTGTG-----------CGTGCGTG--------AGTG------------------------------------------TGTATG------------------TG----AAGA-----------------------------------------AAAAGC----------------------------------CGCACACTGCGAAAATTT----------T-----------------------------------------CC------------------------------------------------------------------------------------------------------------------TTTCCTT-T-------------------C---C-----CC-----------AACGGTCGAATATAACCGCTAAAATTGTGG----------------------------------------------------------AAAAACAGGAGAAAACCCCCAAGC---G-------------GAAGAAGAAGACTGCAGCCAGTAAAATGTCTGCAGTTTATTCGCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTCGAATATAACC.............................................................................................................................................................1512.00200000002000000000
........................................................................................................................................................................................................................................................................................................................................GA-----------------------------------------AAAAGC----------------------------------CGCACACTGCGA...............................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----------AACGGTCGAATATAACC.............................................................................................................................................................1811.00101000000000000000
................................................................................................................................................................................................................GTGTGTGT--GTGTG-----------CGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.05100000000001000000
...........................................................................................................................................................................................................TGTGTGTGTGTGT--GTGTG-----------CGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGC---G-------------GAAGAAGAAGC..................................16200.05100000000010000000
droSec2
GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGTGTGTGTGTGT--GTGTG-----------CGTGCGTG--------AGTG------------------------------------------TGTATG------------------TG----AAGA-----------------------------------------AAAAGC----------------------------------CGCACACTGCGAAAATTT----------T-----------------------------------------CC------------------------------------------------------------------------------------------------------------------GTTCCTT-T-------------------C---C-----CC-----------AACGGTCGAATATAACCGCTAAAATTGTGG----------------------------------------------------------AAAAACAGGAGAAAACCCCCAAGC---G-------------GAAGAAGAAGACTGCAGCCAGTAAAATGTCTGCAGTTTATTCGCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAGGAGAAAACCCCCAAGC---...........................................................2211.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAGCCAGTAAAATGTCT..............2011.0010010
...............................................................................................................................................................................................................TGTGTGTGT--GTGTG-----------CGTGCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.3061230
...............................................................................................................................................................................................................TGTGTGTGT--GTGTG-----------CGTGCGTG--------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22160.1320011
.............................................................................................................................................................................................................TGTGTGTGTGT--GTGTG-----------CG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1020020
...................................................................................................................................................................................................................TGTGT--GTGTG-----------CGTGCGTG--------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0511000
...............................................................................................................................................................................................................TGTGTGTGT--GTGTG-----------CGTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0511000
..................................................................................................................................................................................................................GTGTGT--GTGTG-----------CGTGCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510010
droYak3
AAAAAAAG--------------------------------------------GAGAAAAGA-------------------------TAGCCACTTCT------------------------------TTGCCCGTGT--------ACGTGTGCGTGTGTTTGCGTGTCTTTACTTAGTGTGTGTGTGTGCCAGCGCTCGCGGTTGTGTGCGTGCGT--GTGTG---------------------------TGTG------------------------------------------TGTATG------------------TG----AAAA-----------------------------------------AAACGC----------------------------------CGCACACTGCGAAAATTT----------T-----------------------------------------CC------------------------------------------------------------------------------------------------------------------TTTCCTT-T-------------------C---C-----CC-----------AACGGTCGAATATAACCGCTAAAATTGTGG----------------------------------------------------------AAAAACAGGAGAAAACCCCCAAGC---G-------------GAAGAAGAAGACTGCAGCCAGTAAAATGTCTGCAGTTTACTCGCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................ACTTCT------------------------------TTGCCCGTGT--------ACGTGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGG----------------------------------------------------------AAAAACAGGAGAAAACCCCC..................................................................2511.00100100000000
droEre2
CGCG------------------------------------------------------------------------------------------------------------------------------CACTCGT--------ATGTGTTTGCATAGTTGGGTGTTTAAGCATATTACCCGTA----------------GATATGTGTGCCT-----------------------GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATC------CGTCCATATGCCTGTCCGTCGGCCCCG-----TTCGATTTATTTGTCCGCGCTCCACAACAAAGACTCATAATAATCTGTTGGGCCAAT--CAAG-TAAAATATGCGCGAGA------------------------------------------------------------------------------------------------------------------------------------------TCAG-------------------------TCAACTA---C-----------------AAAAACAAGAGCAA------------AAGTAAAG--CACAG---CA---------AAGCA-----------------------ACTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................ATATTACCCGTA----------------GATATGTGTGCCT-----------------------GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT..................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100000

Generated: 05/19/2015 at 11:03 AM