ID:

dvi_6839

 Coordinate:

scaffold_12875:14255559-14255709 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.1 -15.0 -15.0

Flybase annnotation

exon [dvir_GLEANR_7399:1]; CDS [Dvir\GJ22087-cds]; intron [Dvir\GJ22087-in]

Repeatable elements

NameClassFamilyStrand
(CCA)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGAACCAGAAGCCGAGCCCGAGCTCTGGCATAATGAAAATACGAATGAGAGTTCATGTGAAACGCAAGTGCATGGCGAGAGGAGAAGGAGTTGGGGTCAGAGCGATGCATGCCGAAATGATAGACCCAGATCCACATCACCAACACCTCAAGCACGATCACCACCACCACCACAACAACAACAACAACCACCACCACCAGCACCACCCACTGCCAACGAAGATTATAGAGCAATTGATGTAAATAGCAATG
*****************************************************************************....((...(((.(((((((((...((........))...))))...))))).)))...))...************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060661
160x9_0-2h_embryos_total
 SRR060677
Argx9_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 V047
embryo
 V116
male body		 SRR060659
Argentina_testes_total
 SRR060666
160_males_carcasses_total
 V053
head
 M027
male body		 SRR1106730
embryo_16-30h
 SRR060665
9_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060676
9xArg_ovaries_total
......................................................................................................................GATAGACCCAGATCCACATCACC.............................................................................................................. 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................AAATACGAATGAGAGTTCAT................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AGAGGAGAAGGAGTTGGGGTC......................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................GATGCATGCCGAAATGATAGACC............................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................ACCACAACAACAACAACAACCACCACC........................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................CGAATGAGAGTTCATGTG................................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGGGGTCAGAGCGATGCATGCCGA........................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TATAGAGCAATTGATGTAAATAGC.... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................GGCATAATGAAAATACGAATGAGAGTT...................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................GAAACGCAAGTGCATGGCGAGA........................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................AGCACGATCACCACCACCACAACAAC........................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................GCATGGCGAGAGGAGAAGGAGTTGGG............................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................ATGAAAAAATGAATGAGGGTT...................................................................................................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................AATGAAAAAATGAATGAGGGT....................................................................................................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................AACAACAACCACCACCAC...................................................... 18 0 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................CTACGACAACCACTACCACCAGC.................................................. 23 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................ACAAGAACAACCACCACC........................................................ 18 1 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................TGTGTGGAGAAGGAGTTGGG............................................................................................................................................................ 20 3 15 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................CGACAACCACTACCACCAGT.................................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................GCTTGCCGGAATGGTAGAC.............................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................TGAAAAGGAAGTCCATGGCG.............................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................CCACCGCCAGCATCACACAC......................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GCTTGGTCTTCGGCTCGGGCTCGAGACCGTATTACTTTTATGCTTACTCTCAAGTACACTTTGCGTTCACGTACCGCTCTCCTCTTCCTCAACCCCAGTCTCGCTACGTACGGCTTTACTATCTGGGTCTAGGTGTAGTGGTTGTGGAGTTCGTGCTAGTGGTGGTGGTGGTGTTGTTGTTGTTGTTGGTGGTGGTGGTCGTGGTGGGTGACGGTTGCTTCTAATATCTCGTTAACTACATTTATCGTTAC
**************************************************************************************************************....((...(((.(((((((((...((........))...))))...))))).)))...))...***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 V116
male body		 M047
female body
 SRR060654
160x9_ovaries_total
 M027
male body		 SRR060662
9x160_0-2h_embryos_total
 SRR060681
Argx9_testes_total
 SRR060657
140_testes_total
..................................................................................................................................................................................................GTGGTCGTTGTGGGTGACGGG.................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................GTGGTCGTGAGGTGTGACGGT.................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................GTGGTCGAGGGGTGTGACGGT.................................... 21 3 7 0.71 5 5 0 0 0 0 0 0 0
..................................................................................................................................................................................................GTGGTCGTTGGGAGTGACGGT.................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................GGTGGTAGTGGGGTGTGACGGT.................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................GGTGGTCGAGGGGTGTGACGGT.................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................TGGTGGTGGTGTTTTAGTTCTT................................................................... 22 3 6 0.33 2 0 2 0 0 0 0 0 0
..................................................................................................................................................................................................GTGGTAGTGGGGTGTGACGGT.................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................TGGTGGTGGTGTTTTAGTT...................................................................... 19 2 20 0.25 5 0 5 0 0 0 0 0 0
..................................................................................................................................................................TGGTGGTGGTGTTTTAGTTCT.................................................................... 21 3 13 0.23 3 0 3 0 0 0 0 0 0
.................................................................................................................................................................GTGGTGGTGGTGTTTTAGTT...................................................................... 20 2 9 0.22 2 0 1 1 0 0 0 0 0
..................................................................................................................................................................TGGTGGTGGTGTTTTAGT....................................................................... 18 2 20 0.20 4 0 2 1 0 0 0 0 1
.................................................................................................................................................................................................GTTGGTCGTTGGGGGTGACGGT.................................... 22 3 5 0.20 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................GTTGGTCGAGGTGTGTGACGGT.................................... 22 3 6 0.17 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................TTGGTCGAGGGGGGTGACGGT.................................... 21 3 14 0.14 2 2 0 0 0 0 0 0 0
..................................................................................................................................................................................................GTGGTCGAGCGGGGTGACGGT.................................... 21 3 8 0.13 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................TGGTGGTCGTAGTGGGTTCC....................................... 20 3 17 0.12 2 0 1 0 0 0 1 0 0
..................................................................................................................................................................................................TTGGTCGAGTTGGGTGACGGT.................................... 21 3 9 0.11 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................TTGGACGAGGTGGGTGACGGT.................................... 21 3 9 0.11 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................TTGGGGGATGTGGTCGTGGTGG............................................ 22 3 9 0.11 1 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................TTGGTCGTTGGGGGTGACGGT.................................... 21 3 10 0.10 1 1 0 0 0 0 0 0 0
.............................................................................................................................GGTCTAGTTGTAGTGGTG............................................................................................................ 18 2 10 0.10 1 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................TTGGTCTTTGTGGGTGACGGT.................................... 21 3 11 0.09 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................GTGGTGGTGTTGTTTTAGTTCTT................................................................ 23 3 12 0.08 1 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................GTGGTCGTTGGGTGTGACGG..................................... 20 3 12 0.08 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GCATGTAATATCTCGTAAAC............... 20 3 15 0.07 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................TTGGTCGTTGTGTGTGACGGT.................................... 21 3 19 0.05 1 1 0 0 0 0 0 0 0
............................................................................................................................GGGGCTAGGGGTAGTGCTT............................................................................................................ 19 3 19 0.05 1 0 0 0 0 0 0 1 0
.................................................................................................................................................................GTGGTGGTGGTGTTTTAG........................................................................ 18 2 20 0.05 1 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................TGGTGGTGGTCGTGGTG............................................. 17 0 20 0.05 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................TGGTGGTGTTGTTGTTGTAGT................................................................. 21 1 20 0.05 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................................TTCGTGGTGGTCGTAGTGGGT.......................................... 21 3 20 0.05 1 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................TGGTCGATGTAGGTGACGGT.................................... 20 3 20 0.05 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................TGGTGGTCGTAGTGGGTT......................................... 18 2 20 0.05 1 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:14255509-14255759 + dvi_6839 CG----A---------------------ACCAGAAGCCGAGCCC--------------GAG------------CTCTGGCAT------------------------AATGAAAAT------------A------------------CGAATGAGAGTTCATGTGAAACGCAAGTGCATGGCGAGAGGAGAAGG--------AGTTGGGGT------CAGAGCGATGCATGCCGAAATGATAGACCCAGATCCACATCACCAACACCT---CAAGC---ACGA------------------------------------TCACCACCACCA---------CCACAACAA---------CAACA--------------------ACAA---CCAC-------------CACCACCAGCACC------------ACCCACTGC------CAA---CGAAGATTATAGAGCAA---TTGATGTAAATAGCAA------------TG
droMoj3 scaffold_6496:9707483-9707667 + CG----A---------------------ACCACAAGCCGAACCC--------------GAGCCCGAACCCGAACCACAA-----------------------------------------------------------------------------TTCTC----TCCGCATGAGCAGGTCGAGAGAAGAGGA--------AGTTGGAGCCAGTGTCAGAGCGATGCATGCC------------CCAGACCCATAT---------------CACC---ATCACC------TCAAGC------------------ACCACAAGCGCCACA-C--------G-----------------CACC---------------------TCAA---G----------CACCACCACCG----------CCA------C------CAC------CACCACCAC-----------------------------------------------
droGri2 scaffold_15245:14232644-14232903 + TG----A---------------------ACCTGAA------CCT--------------GAACCTCAACCTGA---ATCCGTATCCGAATCCGTCTACGAATCCCCCAATGAAAAT------------G------------------CGATTGAGAACTCATGTGAAACGCAGGTG--------CTTGACGCTCAGAGGAGAAGATGGAGC------CACAGTGAAGCATGCA------------GAC---CCACAT---------CA---TCATT---ACA------------------------------------------------G---------CCACAAGAACAACAAGAACAACC--ACC---------------ACCAGCACATAAACC----------------------------------AACCACTGC------CAATG---AAGAACCCAAAGCAA---TAGATGTAAATAGCAACACATGCGAAACTG
droWil2 scf2_1100000004514:127618-127842 - AG----C---------------------AGGAGT------GGCA--------------GAATCATAATGATGAT--------------------------------------------------------------CAGA------------CGATTGCA-----------------AACG---ATGATAATG---------GTTGGACA------GATGGCAATGCATGTG------------AAA---TGA---------CATCT---ACACC---ACAATCTGAATATCATGAACCACAATTTCAAAAAAAT---CAATCTCAACCACAAAATGAAC-----------------C------------------------------------AACACACAATATCACTGCCAATTTTGC-CA------A------TTT------CAA---TGATGACTCCATTTCAA---TAGATGTAAATAGAAA------------TG
dp5 3:3564891-3565095 + CCAGAGC---------------------CG--------GAGCATGAGAGTCACCATAGCGATCATGAGCAGGACAATGAGCATGCAAACG-------------------------------------------------------------------------------------------------ATGACG---------AGTGGACA------GCCCCCGACGCATGCC------------CAC---------------AACCA---CAACC---ACAA------------------------------------CCACCGTCACCACCCACCACTC-----------------CTACT--------------------CCTA---CACC-------------CACTGCCAGCACTGC-CT------T------TGGCAATGAAAATGCCAA---------ACCGAATGGCTATGCAACTGCCGA------------GA
droPer2 scaffold_2:3753629-3753826 + CA-GAGC---------------------CG--------GAGCATGAGAGTCACCATAGCGACCACGAGCAGGACAATGAGCATGCAAACG-------------------------------------------------------------------------------------------------ATGACG---------AGTGGACA------GCCCCCGACGCATGCC------------CAC---------------AACCA---CAACC---ACCGTC------------------------------AC------------CACCCACCACTC-----------------CTACT--------------------CCTA---CACC-------------CACTGCCAGCACTGC-CT------T------TGGCAATGAAAATGCCAA---------ACCGAATGGCTATGCAACTGCCGA------------GA
droAna3 scaffold_13266:4873372-4873568 + CG----A---------------------C---------------GAGCATCACC---ACAATCCCAGCCAGGACAATGGGAATGCA--------------------------------------------------------------AATGCGAATGCC-----------------TATGAAAGTGCCACTG---------AGTGGCAC------AATGACGATGCATGCC------------ACC---------------CACCATCTCAGTC---ACCA------------------------------------CCACCACCGAT-T--------C-----------------CTCC---------------------TCAA---ACTCAATCCTCCACTGCCA----------------------A------TGC------CAA---AGAAGACTCAGCATCCG---TAGATGTGAATAGCAA------------TG
droBip1 scf7180000395751:672013-672212 + CG--AGC---------------------AGCACAATCCCAGCC--------------------------AGGACTATGGCCATGCCCATGC--------------------------------------------------------AAATGCGAATGCC-----------------TATGAAAGTGCCACTG---------AGTGGCAC------AATGACGATGCATGCC------------ACC---------------CACCA---TCACA---GCCAAC------------------------------ACCACCTCCACCGAA-T--------C-----------------CTCC---------------------TCAA---ACTCAATCCTACACCGCCA----------------------A------TGC------CAA---AGAAGACTCTGCATCCG---TAGATGTGAATAGTAA------------TG
droKik1 scf7180000302682:171916-172130 - GG----A---------------------ACGGGAGAGGGAGCAGGAGCAACAGC---ACAATCACAGCCAGGACAATGGGAATGC--------------------------------------------------------------------AACAGCT-----------------AATGAATATGCCACTG---------AGTGGCAT------CATGACGATGCATCCC------------ACC---------------CATCA---CAGCC---ACAG------------------------------------CCA---------CCCACCAGTC-----------------CTACTCCCCCACC------------TCCA---CCTCAGTCCTACAATGC----------------CA------C------TGC------CAATGCCGAAGACTCGGCATCCA---CAGATGTGAATAGCAA------------TG
droFic1 scf7180000453811:185963-186181 - AG----C---------------------ACCACAATCCCAGCCA--------------GAATCACAGCCAGGACAATGGGAATGCGGATGCGAATGCGAA--------TGCGAAT------------------------------------CTGAATCCA-----------------AATGAATATGCCACTG---------AGTGGCAT------CATGACGATGCATGCC------------ACC---------------CACGT---TCGTCGTCGCCGAA------------------------------TC-----------------------------------------CTTCATCC---------------------------CAATCTTACAATGCCAATGCCAC-------CA------C------TGC------CAATGCCGAAGACTTTCCATCCG---TTGATGTGAATAGCTA------------TG
droEle1 scf7180000491232:291373-291603 - AG----C---------------------ACCACAATCCCAGCCA--------------GAATCACAGCCAGGACAATGGGAATGCGAATGCAACTGAGAC--------TGCGAAT------------------G------------CGAATGCAAATGCA-----------------AATGAATATGCCACTG---------AGTGGCAA------CATGACGATGCATGCC------------ACC---------------CACCT---TCGTC---GCCGAC------------------------------TC-----------------------------------------CTCCACCC---------------------------CAGTCCTACAATGCCAATGCCA---CTGC-CACTGCCAC------TGC------CAATGCCGAAGACTTTCCATCCG---TAGATGTGAATAGCAA------------TG
droRho1 scf7180000780219:62700-62924 + AG----C---------------------ACCACAATCCCAGCCA--------------GAATCACACCCAGGACAATGGGAATGCGGATGCGACTGTGAC--------TGCGAAT------------------G------------ATAATGCAAATGCT-----------------AATGAATATGCCACTG---------TGTGGCAT------CATGACGATGCATGCC------------ACC---------------TACCT---CCGCC---GCCGAC------------------------------TC-----------------------------------------CTCCACCC---------------------------CAATCCTACAATGCCACAG----------CCACTGCCAA------TGC------CAATGTCGAAGATTTTCCATCCA---TAGATGTGAATAGCAA------------TG
droBia1 scf7180000302143:1329456-1329674 - C-------------------------------------CAGCCA--------------GAATCACAGCCAGGACAATGGGAGTGCGGAGGCGGATGAGAA--------TGAA------------------------------------TATGCGAATGCA-----------------GATGAACATGCCACTG---------AATGGCAT------CATGACGATGCATGCC------------ACC---------------CACCT---CCGCCACCGTCGAC------------------------------TCCTC--------------------------------------CTCCACCCCCGAG------CCAAATTGAA---ATCCAAACCCATAGTGC----------------CA------C------TGC------CAATGCCGAAGACTTGCCTTCCG---TAGATGTGAATAGCAG------------AG
droTak1 scf7180000410787:57322-57546 - C-------------------------------------CAGCCA--------------GAATCACAGCCAGGACAATGGGAATGCGGATGCGACTGAGAA--------TGAAAAT------------------G------------CGAATGCGAATGCA-----------------AATGAATATGCCACTG---------AATGGCAT------CATGACGATGCATGCC------------ACC---------------CACCT---CCTCC---GACGAC------------------------------TC-----------------------------------------CTCCGCCCCAAGCCCAAATCCAAATTCAA---ATCCAAACCCACAATGC----------------CA------C------TGC------CAATGCCGAAGACTTTTCATCCG---TAGATGTGAATAGCAA------------TG
droEug1 scf7180000409474:851746-851976 - AG----C---------------------ATCACAATCCCAGCCA--------------GAATCACAGCCAGGACAATGGGAATGCGGATGCGACTGCGAT--------TGCGAATGAG------------------AATG------CGAATGCGAATGCA-----------------AATGAATATGCCACTG---------AGTGGCAT------CATGACGATGCATGCC------------ACC---------------CACCT---CCGCC---AACGAC------------------------------AC-----------------------------------------CACCTCCC------------------CAA---AACCAATCCCACAATGCCAATG----------CCA------C------TGC------CAATGCTGAAGACTTTCTTTCCA---TAGATGTGAATAGCAA------------CG
dm3 chr2R:17094596-17094826 + AG----C---------------------ACCACAATCCCAGCCA--------------GAATCACAGCCAGGACAATGGGAATGCGGATGCAGCTGCGCA--------TGAGAAT------------------GATAGCA------------CGATTGCA-----------------AATGCAAATGCCACTG---------ACTGGCAT------CATGACGATGCATGCC------------ACC---------------CACCT---GCGCC---GACGAG------------------------------GC-----------------------------------------CTCTGCCCCAAAT------------TCAA---AACCAAGCCCACAATGCCAATG----------CCA------C------TGC------CAATGCCGAAGACTTTTCATTCG---TAGATGTGAATAGCAA------------TG
droSim2 2r:17649522-17649752 + AG----C---------------------ACCACAATCCCAGCCA--------------GAATCACAGCCAGGACAATGGGAATGCGGATGCAGCTGCGAA--------TGAGAAC------------------GATAGCA------------CGATTGCA-----------------AATGCAAATGCCACTG---------ACTGGCAT------CATGACGATGCATGCC------------ACC---------------CAACT---CCGCC---GACGAG------------------------------TC-----------------------------------------CTCCGCCCCAAGT------------CCAA---AACCAAGTCCACAATGCCAATG----------CCA------C------TGC------CAATGCCGAAGACTTTGCATCCG---TAGATGTGAATAGCAA------------TG
droSec2 scaffold_10:1904200-1904348 + GA---GGAGAAGAAGGTGATCCACGAGGACCACCGACCCATCCA--------------GATTCAC---CAGACCAA--GGAACACATTCACCACCACGA--------------------------------------------------------------------------------------------------------AAAGCAC------GATCACCATGATCACC------------AC----------------GACCA---CCACG---------------------------------------------ACCATCATG-A--------T-----------------CACC---------------------ACGA---ACACCACC----------------------------------ACCCACTTC------C-------------------------------------------------------
droYak3 2R:12101518-12101778 - AG----C---------------------ACCACAATCCCAGCCA--------------GAATCACAGCCAGGACAATGGGAATGCGGATGCGACTGCGAT--------TGCGAATGAGATTGAAAATGAGAACGATAGCACGATTGCAAATGCAAATGCA-----------------AACGCGAATGCCACTG---------TGTGGCAT------CATGACGATGCATGCC------------ACC---------------CACCT---CCGTC---GACGAG------------------------------TC-----------------------------------------CTTCGCCCCAAAC------------CCAA---AATCAAGCCCACAATGCCAATG----------CCA------C------TGC------CAATGCCGAAGGCTTTTCATCCG---TAGATGTGAATAGCAA------------TG
droEre2 scaffold_4845:11237166-11237414 + C-------------------------------------CAGCCA--------------GAATCACAGCCAGGACAATGGGAATGCGGATGCAGCTGCGAT--------TGCGAATGAGATTGAAAATGAGAATGATAGCACGATTGCAAATGCAAATGCA-----------------AGCGCGAATGCCACTA---------AATGGCAT------CATGACGATGCATGCC------------ACC---------------CACCT---CCGCC---GACGAG------------------------------TC-----------------------------------------CTTCGCCCCAAAC------------CCAA---AATCAAGCCCACAATGCCAATG----------CCA------C------TGC------CAATGCCGAAGACTTTTCATCCG---TAGATGTGAATAGCAA------------TG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CG----A---------------------ACCAGAAGCCGAGCCC--------------GAG------------CTCTGGCAT------------------------AATGAAAAT------------A------------------CGAATGAGAGTTCATGTGAAACGCAAGTGCATGGCGAGAGGAGAAGG--------AGTTGGGGT------CAGAGCGATGCATGCCGAAATGATAGACCCAGATCCACATCACCAACACCT---CAAGC---ACGA------------------------------------TCACCACCACCA---------CCACAACAA---------CAACA--------------------ACAA---CCAC-------------CACCACCAGCACC------------ACCCACTGC------CAA---CGAAGATTATAGAGCAA---TTGATGTAAATAGCAA------------TGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................GATAGACCCAGATCCACATCACC..................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................AAAT------------A------------------CGAATGAGAGTTCAT.....................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000001000000000000000000000000000000
......................................................................................................................................................................................AGAGGAGAAGG--------AGTTGGGGT------C.............................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................GATGCATGCCGAAATGATAGACC.................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................A---------CCACAACAA---------CAACA--------------------ACAA---CCAC-------------CACC............................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................CGAATGAGAGTTCATGTG..................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TGGGGT------CAGAGCGATGCATGCCGA............................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGAGCAA---TTGATGTAAATAGC................2411.001000000000000000000000000000000000000000000000000000000000001000
.............................................................................GGCAT------------------------AATGAAAAT------------A------------------CGAATGAGAGTT........................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................GAAACGCAAGTGCATGGCGAGA.............................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................GCATGGCGAGAGGAGAAGG--------AGTTGGG......................................................................................................................................................................................................................................................................................................2611.001000000000001000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................AACA--------------------ACAA---CCAC-------------CACCAC..........................................................................................18110.091001000000000000000000000000000000000000000000000000000000000000
droMoj3
CG----A---------------------ACCACAAGCCGAACCC--------------GAGCCCGAACCCGAACCACAA-----------------------------------------------------------------------------TTCTC----TCCGCATGAGCAGGTCGAGAGAAGAGGA--------AGTTGGAGCCAGTGTCAGAGCGATGCATGCC------------CCAGACCCATAT---------------CACC---ATCACC------TCAAGC------------------ACCACAAGCGCCACA-C--------G-----------------CACC---------------------TCAA---G----------CACCACCACCG----------CCA------C------CAC------CACCACCAC-----------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................GTGTCAGAGCGATGCATGCC------------CCAGT.............................................................................................................................................................................................................................................................2511.001010000
.....................................................................................................................................................................................GAGAGAAGAGGA--------AGTTGGAGCC...................................................................................................................................................................................................................................................................................................2211.001000001
droGri2
TG----A---------------------ACCTGAA------CCT--------------GAACCTCAACCTGA---ATCCGTATCCGAATCCGTCTACGAATCCCCCAATGAAAAT------------G------------------CGATTGAGAACTCATGTGAAACGCAGGTG--------CTTGACGCTCAGAGGAGAAGATGGAGC------CACAGTGAAGCATGCA------------GAC---CCACAT---------CA---TCATT---ACA------------------------------------------------G---------CCACAAGAACAACAAGAACAACC--ACC---------------ACCAGCACATAAACC----------------------------------AACCACTGC------CAATG---AAGAACCCAAAGCAA---TAGATGTAAATAGCAACACATGCGAAACTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AG----C---------------------AGGAGT------GGCA--------------GAATCATAATGATGAT--------------------------------------------------------------CAGA------------CGATTGCA-----------------AACG---ATGATAATG---------GTTGGACA------GATGGCAATGCATGTG------------AAA---TGA---------CATCT---ACACC---ACAATCTGAATATCATGAACCACAATTTCAAAAAAAT---CAATCTCAACCACAAAATGAAC-----------------C------------------------------------AACACACAATATCACTGCCAATTTTGC-CA------A------TTT------CAA---TGATGACTCCATTTCAA---TAGATGTAAATAGAAA------------TGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................ATGGCAATGCATGTG------------AAA---TGA---------CAT.............................................................................................................................................................................................................................................2411.00100100
....................................................................GATGAT--------------------------------------------------------------CAGA------------CGATTGCA-----------------AACG---AT............................................................................................................................................................................................................................................................................................................................2411.00100010
.........................................................................................................................................................................................................................ATGGCAATGCATGTG------------AAA---TG..........................................................................................................................................................................................................................................................2020.50100001
dp5
CCAGAGC---------------------CG--------GAGCATGAGAGTCACCATAGCGATCATGAGCAGGACAATGAGCATGCAAACG-------------------------------------------------------------------------------------------------ATGACG---------AGTGGACA------GCCCCCGACGCATGCC------------CAC---------------AACCA---CAACC---ACAA------------------------------------CCACCGTCACCACCCACCACTC-----------------CTACT--------------------CCTA---CACC-------------CACTGCCAGCACTGC-CT------T------TGGCAATGAAAATGCCAA---------ACCGAATGGCTATGCAACTGCCGA------------GASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................................................CCCACCACTC-----------------CTACT--------------------CCTA---CA...............................................................................................................2111.0010100000000
droPer2
CA-GAGC---------------------CG--------GAGCATGAGAGTCACCATAGCGACCACGAGCAGGACAATGAGCATGCAAACG-------------------------------------------------------------------------------------------------ATGACG---------AGTGGACA------GCCCCCGACGCATGCC------------CAC---------------AACCA---CAACC---ACCGTC------------------------------AC------------CACCCACCACTC-----------------CTACT--------------------CCTA---CACC-------------CACTGCCAGCACTGC-CT------T------TGGCAATGAAAATGCCAA---------ACCGAATGGCTATGCAACTGCCGA------------GASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................AACG-------------------------------------------------------------------------------------------------ATGACG---------AGTGGACA------GCCCC.........................................................................................................................................................................................................................................................................................2311.001010000
droAna3
CG----A---------------------C---------------GAGCATCACC---ACAATCCCAGCCAGGACAATGGGAATGCA--------------------------------------------------------------AATGCGAATGCC-----------------TATGAAAGTGCCACTG---------AGTGGCAC------AATGACGATGCATGCC------------ACC---------------CACCATCTCAGTC---ACCA------------------------------------CCACCACCGAT-T--------C-----------------CTCC---------------------TCAA---ACTCAATCCTCCACTGCCA----------------------A------TGC------CAA---AGAAGACTCAGCATCCG---TAGATGTGAATAGCAA------------TGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---AGAAGACTCAGCATCCG---TAGAT.........................2411.001010000
...........................................................................................................................................................................................................................GACGATGCATGCC------------ACC---------------CACC............................................................................................................................................................................................................................................2011.001010000
droBip1
CG--AGC---------------------AGCACAATCCCAGCC--------------------------AGGACTATGGCCATGCCCATGC--------------------------------------------------------AAATGCGAATGCC-----------------TATGAAAGTGCCACTG---------AGTGGCAC------AATGACGATGCATGCC------------ACC---------------CACCA---TCACA---GCCAAC------------------------------ACCACCTCCACCGAA-T--------C-----------------CTCC---------------------TCAA---ACTCAATCCTACACCGCCA----------------------A------TGC------CAA---AGAAGACTCTGCATCCG---TAGATGTGAATAGTAA------------TGSizeHit CountTotal NormTotal
No Reads
droKik1
GG----A---------------------ACGGGAGAGGGAGCAGGAGCAACAGC---ACAATCACAGCCAGGACAATGGGAATGC--------------------------------------------------------------------AACAGCT-----------------AATGAATATGCCACTG---------AGTGGCAT------CATGACGATGCATCCC------------ACC---------------CATCA---CAGCC---ACAG------------------------------------CCA---------CCCACCAGTC-----------------CTACTCCCCCACC------------TCCA---CCTCAGTCCTACAATGC----------------CA------C------TGC------CAATGCCGAAGACTCGGCATCCA---CAGATGTGAATAGCAA------------TGSizeHit CountTotal NormTotal
No Reads
droFic1
AG----C---------------------ACCACAATCCCAGCCA--------------GAATCACAGCCAGGACAATGGGAATGCGGATGCGAATGCGAA--------TGCGAAT------------------------------------CTGAATCCA-----------------AATGAATATGCCACTG---------AGTGGCAT------CATGACGATGCATGCC------------ACC---------------CACGT---TCGTCGTCGCCGAA------------------------------TC-----------------------------------------CTTCATCC---------------------------CAATCTTACAATGCCAATGCCAC-------CA------C------TGC------CAATGCCGAAGACTTTCCATCCG---TTGATGTGAATAGCTA------------TGSizeHit CountTotal NormTotal
No Reads
droEle1
AG----C---------------------ACCACAATCCCAGCCA--------------GAATCACAGCCAGGACAATGGGAATGCGAATGCAACTGAGAC--------TGCGAAT------------------G------------CGAATGCAAATGCA-----------------AATGAATATGCCACTG---------AGTGGCAA------CATGACGATGCATGCC------------ACC---------------CACCT---TCGTC---GCCGAC------------------------------TC-----------------------------------------CTCCACCC---------------------------CAGTCCTACAATGCCAATGCCA---CTGC-CACTGCCAC------TGC------CAATGCCGAAGACTTTCCATCCG---TAGATGTGAATAGCAA------------TGSizeHit CountTotal NormTotal
No Reads
droRho1
AG----C---------------------ACCACAATCCCAGCCA--------------GAATCACACCCAGGACAATGGGAATGCGGATGCGACTGTGAC--------TGCGAAT------------------G------------ATAATGCAAATGCT-----------------AATGAATATGCCACTG---------TGTGGCAT------CATGACGATGCATGCC------------ACC---------------TACCT---CCGCC---GCCGAC------------------------------TC-----------------------------------------CTCCACCC---------------------------CAATCCTACAATGCCACAG----------CCACTGCCAA------TGC------CAATGTCGAAGATTTTCCATCCA---TAGATGTGAATAGCAA------------TGSizeHit CountTotal NormTotal
No Reads
droBia1
C-------------------------------------CAGCCA--------------GAATCACAGCCAGGACAATGGGAGTGCGGAGGCGGATGAGAA--------TGAA------------------------------------TATGCGAATGCA-----------------GATGAACATGCCACTG---------AATGGCAT------CATGACGATGCATGCC------------ACC---------------CACCT---CCGCCACCGTCGAC------------------------------TCCTC--------------------------------------CTCCACCCCCGAG------CCAAATTGAA---ATCCAAACCCATAGTGC----------------CA------C------TGC------CAATGCCGAAGACTTGCCTTCCG---TAGATGTGAATAGCAG------------AGSizeHit CountTotal NormTotal
No Reads
droTak1
C-------------------------------------CAGCCA--------------GAATCACAGCCAGGACAATGGGAATGCGGATGCGACTGAGAA--------TGAAAAT------------------G------------CGAATGCGAATGCA-----------------AATGAATATGCCACTG---------AATGGCAT------CATGACGATGCATGCC------------ACC---------------CACCT---CCTCC---GACGAC------------------------------TC-----------------------------------------CTCCGCCCCAAGCCCAAATCCAAATTCAA---ATCCAAACCCACAATGC----------------CA------C------TGC------CAATGCCGAAGACTTTTCATCCG---TAGATGTGAATAGCAA------------TGSizeHit CountTotal NormTotal
No Reads
droEug1
AG----C---------------------ATCACAATCCCAGCCA--------------GAATCACAGCCAGGACAATGGGAATGCGGATGCGACTGCGAT--------TGCGAATGAG------------------AATG------CGAATGCGAATGCA-----------------AATGAATATGCCACTG---------AGTGGCAT------CATGACGATGCATGCC------------ACC---------------CACCT---CCGCC---AACGAC------------------------------AC-----------------------------------------CACCTCCC------------------CAA---AACCAATCCCACAATGCCAATG----------CCA------C------TGC------CAATGCTGAAGACTTTCTTTCCA---TAGATGTGAATAGCAA------------CGSizeHit CountTotal NormTotal
No Reads
dm3
AG----C---------------------ACCACAATCCCAGCCA--------------GAATCACAGCCAGGACAATGGGAATGCGGATGCAGCTGCGCA--------TGAGAAT------------------GATAGCA------------CGATTGCA-----------------AATGCAAATGCCACTG---------ACTGGCAT------CATGACGATGCATGCC------------ACC---------------CACCT---GCGCC---GACGAG------------------------------GC-----------------------------------------CTCTGCCCCAAAT------------TCAA---AACCAAGCCCACAATGCCAATG----------CCA------C------TGC------CAATGCCGAAGACTTTTCATTCG---TAGATGTGAATAGCAA------------TGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................ACAGCCAGGACAATGGGAATGCGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................CAGGACAATGGGAATGCGGATGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................................................................A--------TGAGAAT------------------GATAGCA------------CGATTGC.......................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................AATGGGAATGCGGATGCAGCTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................A------C------TGC------CAATGCCGAAGACTTTT.......................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTCATTCG---TAGATGTGAATA..................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................ATGCATGCC------------ACC---------------CACCT---GCGCC---GA..............................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................CCAGGACAATGGGAATGCGGATGCAGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................AATG----------CCA------C------TGC------CAATGCCGAAGACTTTTC......................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTCATTCG---TAGATGTGA.....................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................GCCAGGACAATGGGAATGCGGATGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................ATGCATGCC------------ACC---------------CACCT---GCGCC---GT..............................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................ACAGCCAGGACAATGGGAATGCGGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................CAGCCAGGACAATGGGAATGC.................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................C------CAATGCCGAAGACTTTTCATTCG---TA............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGAAGACTTTTCATTCG---TAGATGT.......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................CACAGCCAGGACAATGGGAATGCGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................CTG---------ACTGGCAT------CATGACGA......................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................TGGGAATGCGGATGCAGCTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
........................................GCCA--------------GAATCACAGCCAGGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................T------CATGACGATGCATGCC------------ACC---------------CACCT---G.......................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................G---------ACTGGCAT------CATGACGATGCATGC...............................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAATG----------CCA------C------TGC------CAATGCCGAAG.............................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................CAATGGGAATGCGGATGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................TGACGATGCATGCC------------ACC---------------CACCT---GCGC....................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................CCAGGACAATGGGAATGCGGATGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................AATGGGAATGCGGATGCAGCTGCG....................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................CA------C------TGC------CAATGCCGAAGACTTTTCAT....................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAATG----------CCA------C------TGC------CAATGCCGA...............................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................ACCAAGCCCACAATGCCAATG----------CCA------C------T................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................G------------------------------GC-----------------------------------------CTCTGCCCCAAAT------------TCAA---AACCAAGC.........................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................ACAATGCCAATG----------CCA------C------TGC------CAATGC..................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................TTGCA-----------------AATGCAAATGCCACTG---------ACTG........................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................C------CAATGCCGAAGACTTTTCATTCG---T.............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................A--------TGAGAAT------------------GATAGCA------------CGATTGCA-----------------AATG.................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.....................................................................AGGACAATGGGAATGCGGATGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................GGGAATGCGGATGCAGCTGCG....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAATG----------CCA------C------TGC------CAAT....................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................AT------CATGACGATGCATGCC------------ACC---------------C...............................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................GATTGCA-----------------AATGCAAATGCCACTG---------AC..........................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAATG----------CCA------C------TGC------CAATGCCGAA..............................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................ATCACAGCCAGGACAATGGGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................AATGGGAATGCGGATGCAGCTGCGCA--------..........................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................CAATGGGAATGCGGATGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................TCACAGCCAGGACAATGGGAATGCGG...............................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............................................................................GGGAATGCGGATGCAGCTGCGC...................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AG----C---------------------ACCACAATCCCAGCCA--------------GAATCACAGCCAGGACAATGGGAATGCGGATGCAGCTGCGAA--------TGAGAAC------------------GATAGCA------------CGATTGCA-----------------AATGCAAATGCCACTG---------ACTGGCAT------CATGACGATGCATGCC------------ACC---------------CAACT---CCGCC---GACGAG------------------------------TC-----------------------------------------CTCCGCCCCAAGT------------CCAA---AACCAAGTCCACAATGCCAATG----------CCA------C------TGC------CAATGCCGAAGACTTTGCATCCG---TAGATGTGAATAGCAA------------TGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................AGGACAATGGGAATGCGGATGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................2513.00300000001000020000
.................................................................................................................................................................................................................................................................................................................................................................................................................AATGCCAATG----------CCA------C------TGC------CAATGCCGAA..............................................2711.00100000000010000000
................................................................................................................................................................................................................................................................................................................................................................................................AA---AACCAAGTCCACAATGCC...............................................................................................2011.00100000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGACTTTGCATCCG---TAGATGTGAA....................2711.00100000010000000000
droSec2
GA---GGAGAAGAAGGTGATCCACGAGGACCACCGACCCATCCA--------------GATTCAC---CAGACCAA--GGAACACATTCACCACCACGA--------------------------------------------------------------------------------------------------------AAAGCAC------GATCACCATGATCACC------------AC----------------GACCA---CCACG---------------------------------------------ACCATCATG-A--------T-----------------CACC---------------------ACGA---ACACCACC----------------------------------ACCCACTTC------C-------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AG----C---------------------ACCACAATCCCAGCCA--------------GAATCACAGCCAGGACAATGGGAATGCGGATGCGACTGCGAT--------TGCGAATGAGATTGAAAATGAGAACGATAGCACGATTGCAAATGCAAATGCA-----------------AACGCGAATGCCACTG---------TGTGGCAT------CATGACGATGCATGCC------------ACC---------------CACCT---CCGTC---GACGAG------------------------------TC-----------------------------------------CTTCGCCCCAAAC------------CCAA---AATCAAGCCCACAATGCCAATG----------CCA------C------TGC------CAATGCCGAAGGCTTTTCATCCG---TAGATGTGAATAGCAA------------TGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAATG----------CCA------C------TGC------CAATGCCGAAGGC...........................................2811.00101000000000
.....................................................................................................................GATTGAAAATGAGAACGAT..............................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
......................................................................GGACAATGGGAATGCGGATGCGAC........................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000
...........................................................................ATGGGAATGCGGATGCGACTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
droEre2
C-------------------------------------CAGCCA--------------GAATCACAGCCAGGACAATGGGAATGCGGATGCAGCTGCGAT--------TGCGAATGAGATTGAAAATGAGAATGATAGCACGATTGCAAATGCAAATGCA-----------------AGCGCGAATGCCACTA---------AATGGCAT------CATGACGATGCATGCC------------ACC---------------CACCT---CCGCC---GACGAG------------------------------TC-----------------------------------------CTTCGCCCCAAAC------------CCAA---AATCAAGCCCACAATGCCAATG----------CCA------C------TGC------CAATGCCGAAGACTTTTCATCCG---TAGATGTGAATAGCAA------------TGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................GATGCAGCTGCGAT--------TGCGAATGA.................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
...............................................................................................................................GAGAATGATAGCACGATT.....................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.............................................................................GGGAATGCGGATGCAGCTGCGAT--------TG........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
..........................................................GAATCACAGCCAGGACAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010

Generated: 05/16/2015 at 11:50 PM