dvi_6816

Name	Class	Family	Strand
DMR_DV	Unknown	Unknown	-

Species	Coordinate	ID	Alignment
droVir3	scaffold_12875:14116770-14117020 +	dvi_6816	TCTGCTT---CGCATTTAAACAGCA-----TGGTTATTTC----GACT---------TTTCTCTGTAA-----TGCTATTTGAGTTTCTTTTTTT-------------------------------------A-----------------------------------------------------------TCATAAGTGCTTAATTCAAAATTT---TGACCCAAATCGACAAAATGGCAAGGGGTCAATCGAGGTCGGTGCGAAAATCGAAACTTTTTCGATGTATTTTTTTCTTATATCTCGGGTAA------------TATCTCCGCGCGGAGATATGACGTTCC-AAAACGACATAGCTCCCCGAGGAGATATGACGTTC---------------------------CAA
droMoj3	scaffold_6500:14687762-14687930 -		TGGTTTT-C-----------------------------TT----TTCT---------TTCCTCTTTCA-----TACTTTTTAATTTTCTTTTTTCAAT----------------------------------TGCTTTAACATTTTTGTCGTAAATTATCAGCACATATTAATTTGATTTTTTGTTTTCATTTCACAAAAACTTAATTGC---------------------------------------------------------------AAATTTTTCGATTTTTTTTTTTTTTTAATTTTAACT-----------------------------------------------------------------------------------------------------G-ACAT
droGri2	scaffold_15203:7346293-7346369 -		TATAATTTC---TTTTCC---------TTTCGTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTGTTACTTTTCAGAGCTGAACTTTGTTTTTTTT----------TTTTTTGTTATAG-GAGC
droWil2	scf2_1100000004961:4150227-4150330 -		TGCTAAA-A-------AC-AAAATTGTTA-----------GATT----TTTT----------C---------------------------------------------------------------------TGAAAC------------GAC-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------TAATTTCGCGCGGAGATATGTCGTTCT-GAAACGACATAATTTCGCGCGGAGATATGTCGTTC---------------------------CGC
dp5	Unknown_group_82:12243-12349 +		TTTTTTT-T------------------TG-----------TATT----TTTTGATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGGAGATATGTCGCTTC-TAAGCGTCATAGCTCCGCGCGGAGATATGTCGTTT------------------------------
droPer2	scaffold_166:91996-92102 +		TTTTTTT-T------------------TG-----------TATT----TTTTGATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGGAGATATGTCGCTTC-TAAGCGTCATAGCTCCGCGCGGAGATATGTCGTTT------------------------------
droAna3	scaffold_13767:1251238-1251320 -		TTTACTT-C-------CC------------------------------------------------AA-----TATTGTTTGCATTTCTTTTTTC-------------------------------------T-----------------------------------------------------------GTATGAATAAATAAATTAACATTT----------------------------------------------------------------------------------------------------------------TTATACAACAA-----------------------------CGCAAAAG--------TT---------------------------GCA
droBip1	scf7180000395848:3673-3751 +		GTTGTTC-T------------------TG-----------TTTT----TTTTT------TTATTTTTA-----TGCGTTGATTTTT---TTTGTT-------------------------------------T-----------------------------------------------------------TTGTAATTGTTTGGTTTAAAATTT---CG------------------------------------------------------------------------------------------------------------------------------------------------------------------GT----------------------------CCA
droKik1	scf7180000298648:339-439 -		AAAAGC------------------------------------------------------------------------------------------------------------------------------------------------GAC-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------TATCTCCGAGCGGAGTTATGTCGTTTT-CCTGCGACATATCTCCGAGCGGAGTTATGTCGTTTTCA-TGCGACATATCTCCGCCAAAAAAAAA
droFic1	scf7180000453114:1815-1908 -		TCATTGC-T------------------AC-----------TTTT----TTTTTTGAA---------AAAATCATCTCTT----GCTTCTTTTTCT-------------------------------------T-----------------------------------------------------------GCTTTTCTTTTTCATTCAAAAATT---TTGTTC------------------------------------------------------------------------------------------------------------------------------AAATTAACAAA--------------------------------------------------CTGG
droEle1	scf7180000491193:2216425-2216518 +		ACTTAAA-C----ACTC-------------TAACTCTTTCC---AATTTTTTTTAAG---------CA-----AATTGTT-GAAACATTTTTTTT-------------------------------------T-----------------------------------------------------------GCCTGAAAATTTAATTTAAAATTTTATCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-CAAA
droRho1	scf7180000778200:8928-9010 +		TCATATC-T------------------CC---------------------------------------------------------------------------------------------------------GC------------GCGAC-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------TATCTCCGCGCGGAGATAAGACGTTGA-AAAACGACAGATCTCCGCGCGAAATTATTTCGTTT---------------------------TTA
droBia1	scf7180000301585:66995-67077 +		GATGTAT-T---------------------------------------TTT-----------T---------------------------------------------------------------------CATAGC------------GAC-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------TAACTCCGCGCGGAGATATGTCGTCTT-GAAATGTCATATCTCCGCGCGGAAATATTTCGCT-------------------------------
droTak1	scf7180000415866:115074-115224 -		CCAAATA-GAA-----AA-AAAATC-------------------A----------------------------AAAAAGGGGGTGGCCGGG------TTGATATGGAACGTCCCATATGTTAAATGTTTGTAAATAGC------------GTC-------------------------------------------------------------------------------------------------------------------------------------------------------------AAATCTCCGCGCG---------ACATATCTCCGCCCTTCTACGAACGACATATCTCCGCGCGGAGGTATGACGTTT---------------------------AAA
droEug1	scf7180000405873:29274-29351 -		CTAAACT-G-------CC--------------------------------------------------------------------------------------------------------------------------------------T---------------------------------------------------------------------------------AAACTGCAAG--------------------------------------------------------------------------------------GCGTTAATTTAAATCAATC--TAAAAATCTAAATTCCAAAATTCCATTTTTTCTTT---------------------------ACA
dm3	chr3L:24359945-24360035 +		CCTCACT-T------TTGAAAATTTTTTA-----------G----ATTTTTCTTTGT---------TA-----TATTGTTTTTATTGCCAATTTT-------------------------------------A-----------------------------------------------------------TCAAAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAAATTGTTCATAA--------------------CTAT-GACC
droSim2	x:11653991-11654054 -		GCTGCCA-GTGGCACTTGAGCAATAT------------TT----GATT---------TTCCTCTTTGA-----TGCCATTAGTTTTTCTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------ATT
droSec2	scaffold_21:51728-51791 -		GCTGCCA-GTGGCACTTGAGCAATAT------------TT----GATT---------TTCCTCTTTGA-----TGCCATTAGTTTTTCTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------ATT
droYak3	2R:1313708-1313800 +		CTTTTTC-C------------------TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGAGCTTTGTCGTTTTGCAAATGTCATAGCTCCGAGCGGAGGTATGGTGTTTTCTAAACGACATTTCTCCGCCGAAA-CAAA
droEre2	scaffold_4690:18024919-18024987 +		GTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------TATCTCTGCGCGGAATAATGTCGTTGT-AAAACAACAAAGTTCCGCGCGGAGATATGTCGTTT---------------------------TTA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

TCTGCTT---CGCATTTAAACAGCA-----TGGTTATTTC----GACT---------TTTCTCTGTAA-----TGCTATTTGAGTTTCTTTTTTT-------------------------------------A-----------------------------------------------------------TCATAAGTGCTTAATTCAAAATTT---TGACCCAAATCGACAAAATGGCAAGGGGTCAATCGAGGTCGGTGCGAAAATCGAAACTTTTTCGATGTATTTTTTTCTTATATCTCGGGTAA------------TATCTCCGCGCGGAGATATGACGTTCC-AAAACGACATAGCTCCCCGAGGAGATATGACGTTC---------------------------CAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................................................................................................................................................................................................................TTT---TGACCCAAATCGACAAAATGGCA..............................................................................................................................................................................	26	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................TT---TGACCCAAATCGACAAAATGGC...............................................................................................................................................................................	24	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................TT---TGACCCAAATCGACAAAATGGCAAG............................................................................................................................................................................	27	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................CC-AAAACGACATAGCTCCCCG..............................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................CTCGGGTAA------------TATCTCCGCGCGGAGATA...........................................................................	27	12	0.08	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATCTCCGCGCGGAGATATGACGTTCC-A................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TTT---TGACCCAAATCGACAAAATGG................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TGCGAAAATCGAAACTTTTTCGATGT.................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................TCGGTGCGAAAATCGAAACTTTTTCG.....................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................TTTTTT-------------------------------------A-----------------------------------------------------------TCATAAGTGCTTA...................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................TGACCCAAATCGACAAAATGG................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................AAATCGACAAAATGGCAAGG...........................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TAAGTGCTTAATTCAAAATTT---TGACCCA..............................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................CC-AAAACGACATAGCTCCC................................................	19	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GGAGATATGACGTTCC-AA...............................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................CGAAAATCGAAACTTTTTCG.....................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TAAGTGCTTAATTCAAAATTT---TGA..................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TTT---TGACCCAAATCGACAAAATGGC...............................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................AAAATTT---TGACCCAAATCGACAAAAT..................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TGGTTTT-C-----------------------------TT----TTCT---------TTCCTCTTTCA-----TACTTTTTAATTTTCTTTTTTCAAT----------------------------------TGCTTTAACATTTTTGTCGTAAATTATCAGCACATATTAATTTGATTTTTTGTTTTCATTTCACAAAAACTTAATTGC---------------------------------------------------------------AAATTTTTCGATTTTTTTTTTTTTTTAATTTTAACT-----------------------------------------------------------------------------------------------------G-ACAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

TATAATTTC---TTTTCC---------TTTCGTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTGTTACTTTTCAGAGCTGAACTTTGTTTTTTTT----------TTTTTTGTTATAG-GAGC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

TGCTAAA-A-------AC-AAAATTGTTA-----------GATT----TTTT----------C---------------------------------------------------------------------TGAAAC------------GAC-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------TAATTTCGCGCGGAGATATGTCGTTCT-GAAACGACATAATTTCGCGCGGAGATATGTCGTTC---------------------------CGC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......................................................................................................................................................................................................................................................................................................................................TTTCGCGCGGAGATATGTCGTTCT-GAAA.............................................................	28	13	0.15	2	2	0	0	0	0
....................................................................................................................................TGAAAC------------GAC-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------TAATTTCGCGCGGAGA.............................................................................	26	20	0.10	2	0	2	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................T-GAAACGACATAATTTCGCGCGGAGA........................................	26	20	0.10	2	0	2	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................GCGGAGATATGTCGTTC---------------------------C..	18	12	0.08	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................TTTCGCGCGGAGATATGTCGTTCT-G................................................................	25	13	0.08	1	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................TTTCGCGCGGAGATATGTCGTTCT-.................................................................	24	13	0.08	1	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................TCGCGCGGAGATATGTCGTTCT-GA...............................................................	24	13	0.08	1	1	0	0	0	0
........................................................................................................................................AC------------GAC-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------TAATTTCGCGCGGAGATATGT........................................................................	27	20	0.05	1	0	0	0	1	0
......................................................................................................................................AAAC------------GAC-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------TAATTTCGCGCGG................................................................................	21	20	0.05	1	0	0	0	1	0
......................................................................................................................................AAAC------------GAC-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------TAATTTCGCGCGGAGAT............................................................................	25	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TAATTTCGCGCGGAGATATGTCGT................................	24	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................ACGACATAATTTCGCGCGGAGATATGT...................................	27	20	0.05	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................TCT-GAAACGACATAATTTCGCT..............................................	22	20	0.05	1	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................AAACGACATAATTTCGCGCGGAGAT.......................................	25	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................T-GAAACGACATAATTTCGCG..............................................	20	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................GAAACGACATAATTTCGCGCGGAGA........................................	25	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................GAGATATGTCGTTCT-GAAACGA..........................................................	22	20	0.05	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................TAATTTCGCGCGGAGATATGTCGTT...............................	25	20	0.05	1	0	1	0	0	0
...................................................T----------C---------------------------------------------------------------------TGAAAC------------GAC-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------TAATTTCGCT...................................................................................	22	20	0.05	1	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................AAACGACATAATTTCGCGCGG...........................................	21	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................T-GAAACGACATAATTTCGCGCG............................................	22	20	0.05	1	0	0	1	0	0
......................................................................................................................................................GAC-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------TAATTTCGCGCGGAGATATGT........................................................................	25	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................TAATTTCGCGCGGAGATATGTCGT.....................................................................	24	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................TTTCGCGCGGAGATATGTCGTTC...................................................................	23	20	0.05	1	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TAATTTCGCGCGGAGATATGTCGTT....................................................................	25	20	0.05	1	0	1	0	0	0

dp5

TTTTTTT-T------------------TG-----------TATT----TTTTGATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGGAGATATGTCGCTTC-TAAGCGTCATAGCTCCGCGCGGAGATATGTCGTTT------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...................................................TGATGG---------------------------------------------------------------------------TGTATCGGCATAATTTG...........................................................................................................................................................................................................................................................................	23	7	37.71	264	0	264	0	0	0	0	0	0	0	0
...................................................TGATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGC..........................................................................................................................................................................................................................................................................	24	7	6.71	47	0	45	2	0	0	0	0	0	0	0
...................................................TGATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGCTC........................................................................................................................................................................................................................................................................	26	7	6.57	46	0	41	2	0	3	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TAAGCGTCATAGCTCCGCGCGGAGA........................................	25	5	6.40	32	0	29	1	0	2	0	0	0	0	0
...................................................TGATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------..........................................................................................................	27	7	4.29	30	0	28	0	0	2	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TCGCTGCGCGGAGATATGTCGCTTC-.................................................................	25	5	4.00	20	0	20	0	0	0	0	0	0	0	0
..................................................TTGATGG---------------------------------------------------------------------------TGTATCGGCATAATTTG...........................................................................................................................................................................................................................................................................	24	7	3.71	26	0	26	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TCGCTGCGCGGAGATATGTCGC.....................................................................	22	5	3.60	18	0	17	0	0	0	0	1	0	0	0
...................................................TGATGG---------------------------------------------------------------------------TGTATCGGCATAATT.............................................................................................................................................................................................................................................................................	21	7	3.57	25	0	25	0	0	0	0	0	0	0	0
.................................................TTTGATGG---------------------------------------------------------------------------TGTATCGGCATAATT.............................................................................................................................................................................................................................................................................	23	7	3.00	21	0	19	2	0	0	0	0	0	0	0
....................................................GATGG---------------------------------------------------------------------------TGTATCGGCATAATTTG...........................................................................................................................................................................................................................................................................	22	8	2.75	22	0	22	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TCGCTGCGCGGAGATATGTCGCTT...................................................................	24	5	2.60	13	0	12	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TCGCTGCGCGGAGATATGTCG......................................................................	21	5	2.60	13	0	13	0	0	0	0	0	0	0	0
...................................................TGATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------.............................................................................................	28	7	2.57	18	0	17	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................TGCGCGGAGATATGTCGCTTC-TAAGC............................................................	26	4	2.50	10	0	9	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TCGCTGCGCGGAGATATGTCGCT....................................................................	23	5	2.00	10	0	10	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................CCGCGCGGAGATATGTCGTTT------------------------------	21	14	2.00	28	0	26	0	0	0	0	2	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TAAGCGTCATAGCTCCGCGCGGAGATA......................................	27	5	2.00	10	0	7	2	0	0	0	1	0	0	0
...................................................................................................................................................TGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGGAGATA...........................................................................	25	7	1.86	13	0	13	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................TGCGCGGAGATATGTCGCTTC-TAAGCGTC.........................................................	29	4	1.75	7	0	3	4	0	0	0	0	0	0	0
..................................................TTGATGG---------------------------------------------------------------------------TGTATCGGCATAATT.............................................................................................................................................................................................................................................................................	22	7	1.71	12	0	12	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TAGCTCCGCGCGGAGATATGTCGTT...............................	25	8	1.63	13	0	13	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TAAGCGTCATAGCTCCGCGCGGAG.........................................	24	5	1.60	8	0	6	1	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TCGCTGCGCGGAGATATGTCGCTTC-T................................................................	26	4	1.25	5	0	4	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TTC-TAAGCGTCATAGCTCCGCGCGG...........................................	25	4	1.25	5	0	5	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TCGCTGCGCGGAGATATGTC.......................................................................	20	6	1.17	7	0	4	0	0	1	0	2	0	0	0
...................................................TGATGG---------------------------------------------------------------------------TGTATCGGCATAATTT............................................................................................................................................................................................................................................................................	22	7	1.14	8	0	8	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TAGCTCCGCGCGGAGATATGTCG.................................	23	8	1.13	9	0	7	0	0	0	0	0	0	2	0
..............................................................................................................................................TAATTTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGG................................................................................	25	8	1.13	9	0	8	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TCCGCGCGGAGATATGTCGTT...............................	21	14	1.00	14	0	12	0	0	0	0	1	1	0	0
.....................................................................................................................................................................................................................................................................................................................................TCGCTGCGCGGAGATATGTCGCTA...................................................................	24	5	1.00	5	0	5	0	0	0	0	0	0	0	0
..................................................TTGATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGC..........................................................................................................................................................................................................................................................................	25	7	1.00	7	0	5	2	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TTC-TAAGCGTCATAGCTCCGCGCGGA..........................................	26	4	1.00	4	0	4	0	0	0	0	0	0	0	0
...................................................TGATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGA..........................................................................................................................................................................................................................................................................	24	7	1.00	7	0	6	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................TGCGCGGAGATATGTCGCTTC-TAAGCG...........................................................	27	4	1.00	4	0	3	0	0	1	0	0	0	0	0
................................................TTTTGATGG---------------------------------------------------------------------------TGTATCGGCATAATT.............................................................................................................................................................................................................................................................................	24	7	0.86	6	0	6	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TCGCTGCGCGGAGATATGTCGT.....................................................................	22	5	0.80	4	0	4	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TAAGCGTCATAGCTCCGCGCGGAGAT.......................................	26	5	0.80	4	0	3	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TC-TAAGCGTCATAGCTCCGCGCGGA..........................................	25	5	0.80	4	0	4	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................TGCGCGGAGATATGTCGCTTC-TAAG.............................................................	25	4	0.75	3	0	3	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................GCGGAGATATGTCGCTTC-TAAGCGTC.........................................................	26	4	0.75	3	0	2	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CGCGGAGATATGTCGCTTC-TAAGCGTC.........................................................	27	4	0.75	3	0	3	0	0	0	0	0	0	0	0
....................................................GATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGCTC........................................................................................................................................................................................................................................................................	25	8	0.75	6	0	6	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GGAGATATGTCGCTTC-TAAGCGTCA........................................................	25	4	0.75	3	0	3	0	0	0	0	0	0	0	0
..................................................TTGATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGCTC........................................................................................................................................................................................................................................................................	27	7	0.71	5	0	5	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TCGCTGCGCGGAGATATGTCGA.....................................................................	22	5	0.60	3	0	3	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TC-TAAGCGTCATAGCTCCGCGCGGAGA........................................	27	5	0.60	3	0	3	0	0	0	0	0	0	0	0
...................................................TGATGG---------------------------------------------------------------------------TGTATCGGCATAAT..............................................................................................................................................................................................................................................................................	20	7	0.57	4	0	4	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CGCGGAGATATGTCGCTTC-TAAGC............................................................	24	4	0.50	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................CTCCGCGCGGAGATATGTCGT................................	21	16	0.50	8	0	7	0	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................TGCGCGGAGATATGTCGCTTC-TAAGAA...........................................................	27	6	0.50	3	0	3	0	0	0	0	0	0	0	0
......................................................................................................................................................TCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGGAGATATGTC.......................................................................	26	6	0.50	3	0	3	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................GCGCGGAGATATGTCGCTTC-TAAGA............................................................	25	4	0.50	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................TCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGGAGATATGT........................................................................	25	6	0.50	3	0	2	1	0	0	0	0	0	0	0
...................................................................................................................................................TGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGGAGATATG.........................................................................	27	6	0.50	3	0	2	0	0	0	0	1	0	0	0
..................................................TTGATGG---------------------------------------------------------------------------TGTATCGGCATAAT..............................................................................................................................................................................................................................................................................	21	7	0.43	3	0	3	0	0	0	0	0	0	0	0
...................................................TGATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGCTA........................................................................................................................................................................................................................................................................	26	7	0.43	3	0	3	0	0	0	0	0	0	0	0
..............................................................................................................................................TAATTTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGGAG..............................................................................	27	7	0.43	3	0	3	0	0	0	0	0	0	0	0
...................................................TGATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGCT.........................................................................................................................................................................................................................................................................	25	7	0.43	3	0	3	0	0	0	0	0	0	0	0
...................................................TGATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGCAA........................................................................................................................................................................................................................................................................	26	7	0.43	3	0	3	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TC-TAAGCGTCATAGCTCCGCGCGG...........................................	24	5	0.40	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATCGCTGCGCGGAGATATGTCGC.....................................................................	23	5	0.40	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................TCGCTTC-TAAGCGTCATAGCTCCGCGC.............................................	27	5	0.40	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TCGCTGCGCGGAGATATGTCGCTTT-.................................................................	25	5	0.40	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................TCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGGAGATATGTCGC.....................................................................	28	5	0.40	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TAGCTCCGCGCGGAGATATGTCGTTT------------------------------	26	8	0.38	3	0	3	0	0	0	0	0	0	0	0
....................................................GATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGC..........................................................................................................................................................................................................................................................................	23	8	0.38	3	0	3	0	0	0	0	0	0	0	0
......................................................................................................................................................TCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGGAGATATG.........................................................................	24	6	0.33	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................CTCCGCGCGGAGATATGTCG.................................	20	16	0.31	5	0	5	0	0	0	0	0	0	0	0
...................................................................................................................................................TGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGGAGA.............................................................................	23	7	0.29	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................TGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGGAG..............................................................................	22	7	0.29	2	0	2	0	0	0	0	0	0	0	0
.................................................TTTGATGG---------------------------------------------------------------------------TGTATCGGCATAATTTG...........................................................................................................................................................................................................................................................................	25	7	0.29	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................CTCCGCGCGGAGATATGTCGTT...............................	22	14	0.29	4	0	3	0	0	0	0	0	1	0	0
...................................................TGATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGCTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------..........................................................................................................	27	7	0.29	2	0	2	0	0	0	0	0	0	0	0
...................................................TGATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------A............................................................................................	29	7	0.29	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................TTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGGAG..............................................................................	23	7	0.29	2	0	1	0	0	0	0	1	0	0	0
...................................................TGATGG---------------------------------------------------------------------------TGTATCGGCATA................................................................................................................................................................................................................................................................................	18	7	0.29	2	0	2	0	0	0	0	0	0	0	0
...................................................TGATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGCA.........................................................................................................................................................................................................................................................................	25	7	0.29	2	0	2	0	0	0	0	0	0	0	0
................................................TTTTGATGG---------------------------------------------------------------------------TGTATCGGCATAAT..............................................................................................................................................................................................................................................................................	23	7	0.29	2	0	2	0	0	0	0	0	0	0	0
...........................TG-----------TATT----TTTTGATGG---------------------------------------------------------------------------TGTATCGGC...................................................................................................................................................................................................................................................................................	24	7	0.29	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................TAATTTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGGAGA.............................................................................	28	7	0.29	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................TTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGG................................................................................	21	8	0.25	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................TGCGCGGAGATATGTCGCTTC-TAAGCGT..........................................................	28	4	0.25	1	0	0	1	0	0	0	0	0	0	0
......................................................TGG---------------------------------------------------------------------------TGTATCGGCATAATTTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AAT..........................................................................................	28	8	0.25	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................GCGCGGAGATATGTCGCTTC-TAAGC............................................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................TGCGCGGAGATATGTCGCTTC-TAAGCGA..........................................................	28	4	0.25	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TAGCTCCGCGCGGAGATATGTCGT................................	24	8	0.25	2	0	1	1	0	0	0	0	0	0	0
..............................................................................................................................................TAATTTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCG.................................................................................	24	8	0.25	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TAGCTCCGCGCGGAGATATGTCGTTA------------------------------	26	8	0.25	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TTC-TAAGCGTCATAGCTCCGCGCGGAGA........................................	28	4	0.25	1	0	1	0	0	0	0	0	0	0	0
....................................................GATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------.............................................................................................	27	8	0.25	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................CGGAGATATGTCGCTTC-TAAGCGTC.........................................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0
....................................................GATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGAAA........................................................................................................................................................................................................................................................................	25	8	0.25	2	0	2	0	0	0	0	0	0	0	0
.....................................................ATGG---------------------------------------------------------------------------TGTATCGGCATAATTTG...........................................................................................................................................................................................................................................................................	21	8	0.25	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CGCGGAGATATGTCGCTTC-T................................................................	20	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GGAGATATGTCGCTTC-TAAGC............................................................	21	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................ATAGCTCCGCGCGGAGATATGTCGTT...............................	26	8	0.25	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................TAATTTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGGA...............................................................................	26	8	0.25	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................TGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGG................................................................................	20	8	0.25	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................ATAGCTCCGCGCGGAGATATG....................................	21	9	0.22	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................C-TAAGCGTCATAGCTCCGCGCGGAGA........................................	26	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TCGCTGCGCGGAGATATGTCGCA....................................................................	23	5	0.20	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................AAGCGTCATAGCTCCGCGCGGAGAT.......................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TC-TAAGCGTCATAGCTCCGCGCGGAGAA.......................................	28	5	0.20	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TTC-TAAGCGTCATAGCTCCGC...............................................	21	5	0.20	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TTC-TAAGCGTCATAGCTCCGCGC.............................................	23	5	0.20	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................AAGCGTCATAGCTCCGCGCGGAGA........................................	24	5	0.20	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATCGCTGCGCGGAGATATGTCGCTTC-.................................................................	26	5	0.20	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................A------------AATCGCTGCGCGGAGATATGTCGT.....................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TAAGCGTCATAGCTCCGCGCGGAGT........................................	25	5	0.20	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TCGCTGCGCGGAGATATGTCGTA....................................................................	23	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................TGCGCGGAGATATGTCGCTTC-C................................................................	22	5	0.20	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GCTGCGCGGAGATATGTCGCT....................................................................	21	5	0.20	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TC-TAAGCGTCATAGCTCCGCGCGGAG.........................................	26	5	0.20	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TAAGCGTCATAGCTCCGCGCGGAGAA.......................................	26	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................GCTTC-TAAGCGTCATAGCTCCGCGC.............................................	25	5	0.20	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................CGCTGCGCGGAGATATGTCGCT....................................................................	22	5	0.20	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TTC-TAAGCGTCATAGCTCCGCGCA............................................	24	5	0.20	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TC-TAAGCGTCATAGCTCCGCGCGGAGAT.......................................	28	5	0.20	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TAAGCGTCATAGCTCCGCGCGGA..........................................	23	5	0.20	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................AAGCGTCATAGCTCCGCGCGG...........................................	21	5	0.20	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................CGCTGCGCGGAGATATGTCGCTA...................................................................	23	5	0.20	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................CGCTGCGCGGAGATATGTCGC.....................................................................	21	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GCTGCGCGGAGATATGTCGCTTC-.................................................................	23	5	0.20	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TC-TAAGCGTCATAGCTCCGCG..............................................	21	6	0.17	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................CGCTGCGCGGAGATATGTC.......................................................................	19	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................TGCGCGGAGATATGTCGCTTC-TAAGAAA..........................................................	28	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................TGCGCGGAGATATGTCGCTTC-TAAGCA...........................................................	27	6	0.17	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................A-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGGAGATATGTC.......................................................................	24	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TAAGCGTCATAGCTCCGCGC.............................................	20	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...................................................TGATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGT..........................................................................................................................................................................................................................................................................	24	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................CA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGGAGA.............................................................................	19	7	0.14	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................TCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGGAGAT............................................................................	21	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...................................................TGATGG---------------------------------------------------------------------------TGTATCGGCATAA...............................................................................................................................................................................................................................................................................	19	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TCGCTGCGCGGAGATATGT........................................................................	19	7	0.14	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................GCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGGAGAT............................................................................	23	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................CA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGGAGAT............................................................................	20	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...................................................TGATGG---------------------------------------------------------------------------TGTATCGGCATAATA.............................................................................................................................................................................................................................................................................	21	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...........................TG-----------TATT----TTTTGATGG---------------------------------------------------------------------------TGTATCGGCA..................................................................................................................................................................................................................................................................................	25	7	0.14	1	0	1	0	0	0	0	0	0	0	0
..................................................TTGATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------..........................................................................................................	28	7	0.14	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................GTCATAGCTCCGCGCGGAGA........................................	20	7	0.14	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................GCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGGAGA.............................................................................	22	7	0.14	1	0	1	0	0	0	0	0	0	0	0
............................G-----------TATT----TTTTGATGG---------------------------------------------------------------------------TGTATC......................................................................................................................................................................................................................................................................................	20	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................TTTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGGAG..............................................................................	24	7	0.14	1	0	1	0	0	0	0	0	0	0	0
......T-T------------------TG-----------TATT----TTTTGATGG---------------------------------------------------------------------------TGTATCGGCA..................................................................................................................................................................................................................................................................................	27	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.....TT-T------------------TG-----------TATT----TTTTGATGG---------------------------------------------------------------------------TGTATCGGCA..................................................................................................................................................................................................................................................................................	28	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.................................................TTTGATGG---------------------------------------------------------------------------TGTATCGGCATAATA.............................................................................................................................................................................................................................................................................	23	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................TTTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGGAGATA...........................................................................	27	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...................................................TGATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGAAA........................................................................................................................................................................................................................................................................	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TCGCTGCGCGGAGATATG.........................................................................	18	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.................................................TTTGATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGC..........................................................................................................................................................................................................................................................................	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0
..................................................TTGATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGCT.........................................................................................................................................................................................................................................................................	26	7	0.14	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................CCGCGCGGAGATATGTCGTT...............................	20	14	0.14	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................TCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGGAGAA............................................................................	21	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...................................................TGATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGG..........................................................................................................................................................................................................................................................................	24	7	0.14	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TCCGCGCGGAGATATGTCGTTT------------------------------	22	14	0.14	2	0	2	0	0	0	0	0	0	0	0
........................................TATT----TTTTGATGG---------------------------------------------------------------------------TGTATCGGCA..................................................................................................................................................................................................................................................................................	23	7	0.14	1	0	1	0	0	0	0	0	0	0	0
........T------------------TG-----------TATT----TTTTGATGG---------------------------------------------------------------------------TGTATCGGC...................................................................................................................................................................................................................................................................................	25	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...........................................T----TTTTGATGG---------------------------------------------------------------------------TGTATCGGCATAAT..............................................................................................................................................................................................................................................................................	24	7	0.14	1	0	1	0	0	0	0	0	0	0	0
......T-T------------------TG-----------TATT----TTTTGATGG---------------------------------------------------------------------------TGTATCGGC...................................................................................................................................................................................................................................................................................	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................TGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGGAGAT............................................................................	24	7	0.14	1	0	1	0	0	0	0	0	0	0	0
..................................................TTGATGG---------------------------------------------------------------------------TGTATCGGCATAATTT............................................................................................................................................................................................................................................................................	23	7	0.14	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................TCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGGAGATA...........................................................................	22	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.....TT-T------------------TG-----------TATT----TTTTGATGG---------------------------------------------------------------------------TGTATCGGC...................................................................................................................................................................................................................................................................................	27	7	0.14	1	0	1	0	0	0	0	0	0	0	0
..................................................TTGATGG---------------------------------------------------------------------------TGTATCGGCATAA...............................................................................................................................................................................................................................................................................	20	7	0.14	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................TAATTTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGGT...............................................................................	26	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.....................................................ATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGT..........................................................................................................................................................................................................................................................................	22	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................ATAATTTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGC..................................................................................	24	8	0.13	1	0	0	1	0	0	0	0	0	0	0
...................................................TGATGG---------------------------------------------------------------------------TGTATCGGCATAAAAA............................................................................................................................................................................................................................................................................	22	8	0.13	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................TGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGGA...............................................................................	21	8	0.13	1	0	1	0	0	0	0	0	0	0	0
....................................................GATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGA..........................................................................................................................................................................................................................................................................	23	8	0.13	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................TGTATCGGCATAATTTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATC.........................................................................................	26	8	0.13	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................AATTTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGG................................................................................	24	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................TTTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCG.................................................................................	21	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................AGCTCCGCGCGGAGATATGTCGTT...............................	24	8	0.13	1	0	1	0	0	0	0	0	0	0	0
........................................................G---------------------------------------------------------------------------TGTATCGGCATAATTTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AAT..........................................................................................	26	8	0.13	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................TAATTTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGC..................................................................................	23	8	0.13	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................TGTATCGGCATAATTTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCG........................................................................................	27	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................TTTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGGTT..............................................................................	24	8	0.13	1	0	1	0	0	0	0	0	0	0	0
....................................................GATGG---------------------------------------------------------------------------TGTATCGGCATAATTT............................................................................................................................................................................................................................................................................	21	8	0.13	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GCTCCGCGCGGAGATATGTCGTTT------------------------------	24	8	0.13	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TAGCTCCGCGCGGAGATATGTCGAA...............................	25	8	0.13	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................TCGGCATAATTTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTG.....................................................................................	26	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.....................................................ATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AAT..........................................................................................	29	8	0.13	1	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................CGGCATAATTTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGC....................................................................................	26	8	0.13	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TAGCTCCGCGCGGAGATATGTCGTA...............................	25	8	0.13	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................CATAATTTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGC..................................................................................	25	8	0.13	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TAGCTCCGCGCGGAGATATGTA..................................	22	9	0.11	1	0	1	0	0	0	0	0	0	0	0
......................................................TGG---------------------------------------------------------------------------TGTATCGGCATAATTTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------..........................................................................................................	24	9	0.11	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................CGCGCGGAGATATGTCGTTT------------------------------	20	18	0.11	2	0	2	0	0	0	0	0	0	0	0
.......................................................GG---------------------------------------------------------------------------TGTATCGGCATAATTTGCT.........................................................................................................................................................................................................................................................................	21	9	0.11	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................TGCGCGGAGATATGTCGAA....................................................................	19	9	0.11	1	0	1	0	0	0	0	0	0	0	0
........................................................G---------------------------------------------------------------------------TGTATCGGCATAATTTGCTC........................................................................................................................................................................................................................................................................	21	9	0.11	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TAGCTCCGCGCGGAGATATGTC..................................	22	9	0.11	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TAGCTCCGCGCGGAGATATG....................................	20	9	0.11	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................GCGCGGAGATATGTCGTTT------------------------------	19	19	0.11	2	0	2	0	0	0	0	0	0	0	0
.......................................................GG---------------------------------------------------------------------------TGTATCGGCATAATTTG...........................................................................................................................................................................................................................................................................	19	10	0.10	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TCATAGCTCCGCGCGGAGATA......................................	21	10	0.10	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................TGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGTT.................................................................................	19	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.....................................................ATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGAAA........................................................................................................................................................................................................................................................................	24	12	0.08	1	0	1	0	0	0	0	0	0	0	0
..................................................TTGATGG---------------------------------------------------------------------------TGTATCGGCTA.................................................................................................................................................................................................................................................................................	18	13	0.08	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................CCGCGCGGAGATATGTCG.................................	18	16	0.06	1	0	0	0	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................CCGCGCGGAGATATGTCGT................................	19	16	0.06	1	0	0	0	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................................CTCCGCGCGGAGATATGTCGTA...............................	22	16	0.06	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................CGCGGAGATATGTCGTTT------------------------------	18	19	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

TTTTTTT-T------------------TG-----------TATT----TTTTGATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AATCGCTGCGCGGAGATATGTCGCTTC-TAAGCGTCATAGCTCCGCGCGGAGATATGTCGTTT------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................................................................................................................................................................................................................................................................................................................................................TAAGCGTCATAGCTCCGCGCGGAGATA......................................	27	2	0.50	1	0	1	0	0	0	0
...................................................TGATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGCTC........................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	1	0	0	0
....................................................GATGG---------------------------------------------------------------------------TGTATCGGCATAATTTGCTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------.............................................................................................	27	3	0.33	1	0	1	0	0	0	0

droAna3

TTTACTT-C-------CC------------------------------------------------AA-----TATTGTTTGCATTTCTTTTTTC-------------------------------------T-----------------------------------------------------------GTATGAATAAATAAATTAACATTT----------------------------------------------------------------------------------------------------------------TTATACAACAA-----------------------------CGCAAAAG--------TT---------------------------GCA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.................................................................................................................................................................................................................AACATTT----------------------------------------------------------------------------------------------------------------TTATACAACAA-----------------------------CGCAAAAG--------T...............................	27	14	0.07	1	0	1	0	0	0	0
...................................................................................................................................................................................................................CATTT----------------------------------------------------------------------------------------------------------------TTATACAACAA-----------------------------CGCAAAAG--------T...............................	25	18	0.06	1	0	1	0	0	0	0
....CTT-C-------CC------------------------------------------------AA-----TATTGTTTGCATTTC........................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................T----------------------------------------------------------------------------------------------------------------TTATACAACAA-----------------------------CGCAAAAG--------TT---------------------------GC.	24	20	0.05	1	0	1	0	0	0	0

droBip1

GTTGTTC-T------------------TG-----------TTTT----TTTTT------TTATTTTTA-----TGCGTTGATTTTT---TTTGTT-------------------------------------T-----------------------------------------------------------TTGTAATTGTTTGGTTTAAAATTT---CG------------------------------------------------------------------------------------------------------------------------------------------------------------------GT----------------------------CCA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAAAGC------------------------------------------------------------------------------------------------------------------------------------------------GAC-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------TATCTCCGAGCGGAGTTATGTCGTTTT-CCTGCGACATATCTCCGAGCGGAGTTATGTCGTTTTCA-TGCGACATATCTCCGCCAAAAAAAAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TCATTGC-T------------------AC-----------TTTT----TTTTTTGAA---------AAAATCATCTCTT----GCTTCTTTTTCT-------------------------------------T-----------------------------------------------------------GCTTTTCTTTTTCATTCAAAAATT---TTGTTC------------------------------------------------------------------------------------------------------------------------------AAATTAACAAA--------------------------------------------------CTGG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ACTTAAA-C----ACTC-------------TAACTCTTTCC---AATTTTTTTTAAG---------CA-----AATTGTT-GAAACATTTTTTTT-------------------------------------T-----------------------------------------------------------GCCTGAAAATTTAATTTAAAATTTTATCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-CAAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TCATATC-T------------------CC---------------------------------------------------------------------------------------------------------GC------------GCGAC-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------TATCTCCGCGCGGAGATAAGACGTTGA-AAAACGACAGATCTCCGCGCGAAATTATTTCGTTT---------------------------TTA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GATGTAT-T---------------------------------------TTT-----------T---------------------------------------------------------------------CATAGC------------GAC-------------------------------------------------------------------------------------------------------------------------------------------------------------A------------TAACTCCGCGCGGAGATATGTCGTCTT-GAAATGTCATATCTCCGCGCGGAAATATTTCGCT-------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CCAAATA-GAA-----AA-AAAATC-------------------A----------------------------AAAAAGGGGGTGGCCGGG------TTGATATGGAACGTCCCATATGTTAAATGTTTGTAAATAGC------------GTC-------------------------------------------------------------------------------------------------------------------------------------------------------------AAATCTCCGCGCG---------ACATATCTCCGCCCTTCTACGAACGACATATCTCCGCGCGGAGGTATGACGTTT---------------------------AAA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CTAAACT-G-------CC--------------------------------------------------------------------------------------------------------------------------------------T---------------------------------------------------------------------------------AAACTGCAAG--------------------------------------------------------------------------------------GCGTTAATTTAAATCAATC--TAAAAATCTAAATTCCAAAATTCCATTTTTTCTTT---------------------------ACA	Size	Hit Count	Total Norm	Total
No Reads

dm3

CCTCACT-T------TTGAAAATTTTTTA-----------G----ATTTTTCTTTGT---------TA-----TATTGTTTTTATTGCCAATTTT-------------------------------------A-----------------------------------------------------------TCAAAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAAATTGTTCATAA--------------------CTAT-GACC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................TTTTTCTTTGT---------TA-----TATTGTTTTTATTGCC.......................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TTA-----------G----ATTTTTCTTTGT---------TA-----TATTGT.................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................TT-------------------------------------A-----------------------------------------------------------TCAAAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAAATTGTTCATAA--------------------C........	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................TCTTTGT---------TA-----TATTGTTTTTT............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................TTTGT---------TA-----TATTGTTTTTATTGCCAA.....................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................TCTTTGT---------TA-----TATTGTTTTTTC...........................................................................................................................................................................................................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................TCTTTGT---------TA-----TATTGTTTTTG............................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GCTGCCA-GTGGCACTTGAGCAATAT------------TT----GATT---------TTCCTCTTTGA-----TGCCATTAGTTTTTCTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------ATT

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

GCTGCCA-GTGGCACTTGAGCAATAT------------TT----GATT---------TTCCTCTTTGA-----TGCCATTAGTTTTTCTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------ATT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

CTTTTTC-C------------------TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGAGCTTTGTCGTTTTGCAAATGTCATAGCTCCGAGCGGAGGTATGGTGTTTTCTAAACGACATTTCTCCGCCGAAA-CAAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.....TC-C------------------TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGAGCTTTGTCGTTTTGCAAA.............................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

GTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------TATCTCTGCGCGGAATAATGTCGTTGT-AAAACAACAAAGTTCCGCGCGGAGATATGTCGTTT---------------------------TTA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................................................................................................................................................................................................................................................................................................................................TATCTCTGCGCGGAATAATGTCGTTG...................................................................	26	1	130.00	130	75	0	0	0	1	0	54
.............................................................................................................................................................................................................................................................................................................................................................T-AAAACAACAAAGTTCCGCGCGGAGA........................................	26	1	48.00	48	44	0	0	0	1	0	3
...................................................................................................................................................................................................................................................................................................................................TATCTCTGCGCGGAATAATGTCGTT....................................................................	25	1	25.00	25	4	0	0	0	1	0	20
............................................................................................................................................................................................................................................................................................................................................................GT-AAAACAACAAAGTTCCGCGCGGA..........................................	25	1	20.00	20	0	0	0	0	0	0	20
...........................................................................................................................................................................................................................................................................................................................................................TGT-AAAACAACAAAGTTCCGCGCGGA..........................................	26	1	18.00	18	1	0	0	0	0	0	17
...........................................................................................................................................................................................................................................................................................................................................................TGT-AAAACAACAAAGTTCCGCGCGGAGA........................................	28	1	17.00	17	16	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................T-AAAACAACAAAGTTCCGCGCGGAGATA......................................	28	1	16.00	16	14	0	0	0	0	0	2
..................................................................................................................................................................................................................................................................................................................................................TAATGTCGTTGT-AAAACAACAAAGT....................................................	25	1	16.00	16	9	0	0	0	0	0	7
...........................................................................................................................................................................................................................................................................................................................................................TGT-AAAACAACAAAGTTCCGCGCGGAGATA......................................	30	1	16.00	16	0	0	0	0	0	0	16
.....................................................................................................................................................................................................................................................................................................................................TCTCTGCGCGGAATAATGTCGTTG...................................................................	24	1	15.00	15	15	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TATCTCTGCGCGGAATAATGTCGT.....................................................................	24	1	10.00	10	9	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................TGTCGTTGT-AAAACAACAAAGTTCCGCG..............................................	28	1	6.00	6	0	0	0	0	0	0	6
........................................................................................................................................................................................................................................................................................................................................................CGTTGT-AAAACAACAAAGTTCCGCGCGG...........................................	28	1	5.00	5	1	0	0	0	0	0	4
.......................................................................................................................................................................................................................................................................................................................................TCTGCGCGGAATAATGTCGTTGT-AAAAC............................................................	28	1	5.00	5	5	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TATCTCTGCGCGGAATAA...........................................................................	18	1	5.00	5	0	0	0	0	0	0	5
.TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------TATCTCTGCGCGGAATAATGTCGT.....................................................................	27	1	5.00	5	4	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................TGTCGTTGT-AAAACAACAAAGTTCCGC...............................................	27	1	5.00	5	1	0	0	0	0	0	4
.TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------TATCTCTGCGCGGAATAATGTCG......................................................................	26	1	4.00	4	4	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................TCGTTGT-AAAACAACAAAGTTCCGC...............................................	25	1	3.00	3	0	0	0	0	0	0	3
.......................................................................................................................................................................................................................................................................................................................................TCTGCGCGGAATAATGTCGTTGT-AAAA.............................................................	27	1	3.00	3	3	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATCTCTGCGCGGAATAATGTCGTTG...................................................................	25	1	3.00	3	3	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................AAAACAACAAAGTTCCGCGCGGAGA........................................	25	1	3.00	3	3	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................TGCGCGGAATAATGTCGTTGT-AAAACAAC.........................................................	29	1	3.00	3	3	0	0	0	0	0	0
.TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------TATCTCTGCGCGGAATAATGTCGTTG...................................................................	29	1	3.00	3	3	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................TCGTTGT-AAAACAACAAAGTTCCGCG..............................................	26	1	3.00	3	2	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................CTCTGCGCGGAATAATGTCGTTG...................................................................	23	1	2.00	2	2	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................ACAACAAAGTTCCGCGCGGAGATATGT...................................	27	1	2.00	2	2	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TGTCGTTGT-AAAACAACAAAGTTC..................................................	24	1	2.00	2	2	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TCTCTGCGCGGAATAATGTC.......................................................................	20	1	2.00	2	0	0	0	0	0	0	2
...................................................................................................................................................................................................................................................................................................................................................................CAACAAAGTTCCGCGCGGAGATATG....................................	25	1	2.00	2	0	0	0	0	0	0	2
..........................................................................................................................................................................................................................................................................................................................................GCGCGGAATAATGTCGTTGT-AAAACAAC.........................................................	28	1	2.00	2	2	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................GAATAATGTCGTTGT-AAAACAACAAAGT....................................................	28	1	2.00	2	2	0	0	0	0	0	0
..C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------TATCTCTGCGCGGAATAATGTCGT.....................................................................	26	1	2.00	2	2	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................AAACAACAAAGTTCCGCGCGGAGATA......................................	26	1	2.00	2	2	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................GT-AAAACAACAAAGTTCCGCGCGGAGA........................................	27	1	2.00	2	2	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................TTGT-AAAACAACAAAGTTCCGCGCG............................................	25	1	2.00	2	2	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................AACAACAAAGTTCCGCGCGGAGATA......................................	25	1	2.00	2	2	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TATCTCTGCGCGGAATAATGTC.......................................................................	22	1	2.00	2	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................AACAACAAAGTTCCGCGCGGAGATATG....................................	27	1	2.00	2	2	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................AATGTCGTTGT-AAAACAACAAAGT....................................................	24	1	2.00	2	2	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................AACAAAGTTCCGCGCGGAGATATGTCG.................................	27	1	2.00	2	2	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GTCGTTGT-AAAACAACAAAGTTCCGCG..............................................	27	1	2.00	2	0	0	0	0	0	0	2
...........................................................................................................................................................................................................................................................................................................................................................TGT-AAAACAACAAAGTTCCGCGCG............................................	24	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CGCGGAATAATGTCGTTGT-AAAACAAC.........................................................	27	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TGT-AAAACAACAAAGTTCCGCGCGGC..........................................	26	1	1.00	1	0	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................TAATGTCGTTGT-AAAACAACAAAGTTC..................................................	27	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TATCTCTGCGCGGAATAC...........................................................................	18	1	1.00	1	0	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................AACAACAAAGTTCCGCGCGGA..........................................	21	1	1.00	1	1	0	0	0	0	0	0
.TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------TATCTCTGCGCGGAATAATGTCGTT....................................................................	28	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................T-AAAACAACAAAGTTCCGCGC.............................................	21	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CGCGGAATAATGTCGTTGT-AAAACAA..........................................................	26	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................TGCGCGGAATAATGTCGTTGT-AAAACAA..........................................................	28	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................CTGCGCGGAATAATGTCGTTGT-AAAACA...........................................................	28	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................AAACAACAAAGTTCCGCGCGGAGATATG....................................	28	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................CAAAGTTCCGCGCGGAGATATGTCG.................................	25	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TATCTCTGCGCGGAATAATG.........................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TGTCGTTGT-AAAACAACAAAGTTCCG................................................	26	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................TCGTTGT-AAAACAACAAAGTTCCGCA..............................................	26	1	1.00	1	0	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................AACAAAGTTCCGCGCGGAGATATGT...................................	25	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TCTGCGCGGAATAATGTCGTTG...................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TCTCTGCGCGGAATAATGTCGTTGA-.................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TCTGCGCGGAATAATGTCGTTGT-AAAACAA..........................................................	30	1	1.00	1	0	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................TTGT-AAAACAACAAAGTTCCGCGCGG...........................................	26	1	1.00	1	0	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................TGT-AAAACAACAAAGTTCCGCGCGGAGATG......................................	30	1	1.00	1	0	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................GTCGTTGT-AAAACAACAAAGTTCCGCGC.............................................	28	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................ACAAAGTTCCGCGCGGAGATATGTC..................................	25	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TCCGCGCGGAGATATGTCGTT...............................	21	2	1.00	2	2	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................T-AAAACAACAAAGTTCCGCG..............................................	20	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................TCGTTGT-AAAACAACAAAGTTCCGCGCG............................................	28	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ATCTCTGCGCGGAATAATGTCGTTGT-AA...............................................................	28	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TCTGCGCGGAATAATGTCGTTGT-AAAACA...........................................................	29	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TGT-AAAACAACAAAGTTCCGCGCGGAG.........................................	27	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................AACAACAAAGTTCCGCGCGGAGATATGT...................................	28	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................T-AAAACAACAAAGTTCCGCGCGG...........................................	23	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................T-AAAACAACAAAGTTCCGCGCGAG..........................................	24	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................AACAAAGTTCCGCGCGGAGAA.......................................	21	1	1.00	1	0	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................TCCGCGCGGAGATATGTCGTTT---------------------------TTA	25	2	0.50	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................AGTTCCGCGCGGAGATATGTCGTT...............................	24	2	0.50	1	1	0	0	0	0	0	0

dvi_6816

scaffold_12875:14116820-14116970 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-16.7	-16.5	-16.4