dvi_6815

Name	Class	Family	Strand
Helitron-1_DVir	RC	Helitron	+

Species	Coordinate	ID	Alignment
droVir3	scaffold_12875:14116055-14116305 +	dvi_6815	CATGAACGAATTGA----CGTAC--AAG---GGCGT----TGCAT------------ATC----------------------------------------------------CTCATATA--------GCG----CATGGTGAGGCAAT-----------------------------------------------------------------TTGA------------------------ATTCAT---------------TACATA----------TCACTTCG---GTTCTTTTT----------------------------------------------------------------------------------ATACCCTGAACCCATTAAAAATGGGT-ATAAGGGTAT----ATTGTATTTGTGCAAAATCCAAATGTATGTAACAGGCAGAAGGAAGCACCTCCGACCCCATAAATTATATATATTCTTGATCAGCATCAATAGCCGAGTCGATCTAGCCATGTCCGTCTGTC
droMoj3	scaffold_6540:33612769-33612991 +		CTGGAACGATTTGA----TT-------------T---ATTT-------G--------------------------------------------------------------------------------------------------------------------------------C----------------------ATTT----A---------TTTTCGGAAAATATAAAATTGATGATT-------------------TCTTA----------TC-----A---ATTATTTTT----------------------------------------------------------------------------------ATACCCTGAACCCATTGAAAATGGGAAATCAGGGTAT----AATGGTTTTGT-GAAA-------AGTATGTAACAGGCAGAAGGAATCATCGCAGACCCCATAAAGTATATATATTCTTGATCAGGACGACGAGCTGAGTCGATATAGCCCTGTCCGTCTGTC
droGri2	scaffold_14906:7065270-7065477 -		CATAAATTACATGT-------------------------------------------------------------------------------------------------------------TGTAA--G------CA--------G-----------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAATAAATTTATTTTACAATTTTTGT--TTTTTATACCCTGAACCCATTGAAAATGGGTAAAAAGGGTAT----AATGGCTTTGTGCAAA-------TGTATGCAACAGGCTGAAGGAAGCATCTCCGACCCCATAAAGTATATATATTCTTGATCAGGGTCAACAGTCGAGTCGATATAGCCATGTTCCTCTGTC
droWil2	scf2_1100000004936:770101-770337 +		CATAAATGTGCTGA----CA-------------C---ATGA-------GCCAT----AAC--CA--T-------------------------------------------------GAGA--------GCC----CATAGCATGACCATATGTACCTTACATA---------------------------------------------TGTACTTCTT------------------------ATGTAT---------------T---------------------------CAGTTTTT----------------------------------------------------------------------------------ATACCATACACCCATA------GGGT-GAAATGGTAT----ATTAAAGTCGCCAAAA-------TGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATATATATTCATGATCAGGATCAAAAACCGAGTCGATCTAGCCATGTCCGTCTGTC
dp5	XL_group3a:1918821-1919046 +		ATTA-AAG------------TAC--AAA---AGACT----TGCAA------------CTC----------------------------------------------------CTCA----GTC-------------A-------------------------------------------GTT--------------------A----AGAGCGTTGG------------------------ATTCA------------------ACGGAAATTGTGTT-----------ATCATTTTT----------------------------------------------------------------------------------ATACCCGGTACTCAAA----ATGAGT-GTAAGGGTAT----ATTAGATTTGTGATAAAAGTGGATGTGTGTAATATCGAGAAGGAAGCGTTTTCGACCCCATAAAGTACATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTC----TGTC
droPer2	scaffold_4401:1173-1405 -		ATGA-ATGAA----GAGC---------------C---GTTT-------G----AAGTCTTTGCAGTA-----------------------------------------TTTTCTCTAA--TTGT---------------------------------------------------------------------------------------------T------------------------ATTTATTTTGATACTACAAATG--------------------------ATTATATTT----------------------------------------------------------------------------------ATACCCGATACTCAAA----ATGAGT-ATTGGGGTAT----ATTAGATTTGTGGTAAAAGTGGATGTATGTAACGTCCAGAAGGAATCGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCCTGTCTGTCTGTC
droAna3	scaffold_13333:173212-173426 +		ATAA-AAAAATTTT----TGTAA--AGC---GAT---GTT--TAT------------ATCCTCACATACCAGTATATCA----------------------------------------------------------------GACCAA-----------------------------------------------------------------T-CA---------------A--------A-T----TC----CGAAAT--T---------------------------AACTTATT----------------------------------------------------------------------------------ATACCC-----TTGCA------G-------AGGGTAT----TATAATTTTGGTCAAA-------AGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTGTC
droBip1	scf7180000395621:16064-16281 -		AGTTAAAAT--AAAAAGG---------------C---GTTT-------GTT------ATTCACAATAAC---------------------------------------TTT------------------------------TAT-----------------------------------------------TTA--------------AT----TTTT------------------------TTCAATTTC----G----------------------------------GTACTTTTT----------------------------------------------------------------------------------ATTCCCAGTATTTGTA------GAGT-ACAAGGGTAGTACAATTGTTTTCGTGTTAA-------TGTATGTAACATAGAGAAGTAATCATCTCCGACCACATTATGTATACATACTCTTGATCAGCATCAACAA-CGAGTCGATACAGCCATGTCCTTCCTTT
droKik1	scf7180000302700:78627-78824 -		TATTAAAGAATTCAAAGA---------------C---GTTG-------G----AC--AT----------------------------------------------------TATTTT------------------------AAAACAAA-----------------------------------------------------------------ATGT------------------------ATCCAC---------------TA--------------CG-----A---ACCCTTTTT----------------------------------------------------------------------------------ATACCCT-----TG---------------CAGGGTAT----TATAATTTCAGTCAGA-------AGTTTGCAACGCAGTTAAGGAGACCTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCAACAGCCAAGTCGATCTAGCCATGTCCGTCTGTC
droFic1	scf7180000454044:1088754-1088980 -		CATGAGCTT--GAC-------------C---GGAAC----T-------ACC------AT------------------------------------------------------------------------------------------ACGTGCCGGAAATGCGTGATTTTCGGTGT----------------------GGTAGCGCA-------TT------------------------ATTTA------------------CCGATCGATATGAG-----------CTCCTTTTT----------------------------------------------------------------------------------ATGCCC-----TTGCA------GAGC-A-AAGGGTAT----TATAATTTAAGGCAGA-------AGTTTGCAACGCAGTGAAGGCGACACCTCAGACCCCATAAAGTATATATATTCTTGATCAGCATCACGATTTGAATCGAA----ATATGTCCGTCTGTC
droEle1	scf7180000491104:667840-668050 -		ATAA-------------------------------------------------------T----------------------------------------------------CTC--A--GTTTGCAA--A------AAGATAAACAAA-----------------------------------------------------------------ATGT------------------------AATCAT---------------TTTTTA----------TGAGCTTGCTCGTTCTTTTT----------------------------------------------------------------------------------ATACCCGTTACTCGTA------AAAT-AAAAGGGTAT----ATTGAATTCGTTGAAA-------AGTATGTAACAGGTAAAAGGAAGCGCTTTCGACCATATAAAGTATATATACTCTTGATCAGGATCAATAGCCGAGTCGATCTAGCCATGTCCGTCTGTC
droRho1	scf7180000769470:429-662 -		CATGATTTTATTGA----CG--------G----C-CTGCTT-------G----ACATATC----------TTTATCTCAAGTAAACCATGTTCGAAATTCTTTAGGTCGCC------------------------------TA-------------------------------------------------------------------------------------------------------------------------------------------CTTGA---TTTGTGTTT----------------------------------------------------------------------------------ATACCCGTTACTCGTA------GAGT-AAAAGTGTAT----ATTGTATTCGTGCAAA-------AGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATATATTCTTGTTCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTC
droBia1	scf7180000301650:12798-13023 +		TGAGATAAT--CAA----TGTAAATAGC---G-CCCTT----CAC------------GCCC--T--G-ATT------------------------------------------------------CAA--G------CA--------------------------------------CAATGA--------------------A----AATATTTTCA------------------------ATT----TC----CGAAATATC--------------------------ATTCTATTT----------------------------------------------------------------------------------ATACCCGTTACTTGTA------GAGT-AAAAGGGTAT----ACTAGATTCGCCGGAA-------AGTATGTAACATGTTTAA-----CGTTTCCGACCTAATAAAGTATATATATTCTTGATCAGGGTCACTAGCCGAGTCGATCTAGCAATGTTCGTCTGTC
droTak1	scf7180000413467:10039-10282 -		GGA-------TTGA----AATAT--AAGG--ATC---GTT--TTT------------AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATACCCCTGCAGAGGGTATTATAATTTCAGTCATATGTTTAACGCAGTTAACTTCCTTTCT------------TG--TTTTTATACCCGTTACTCGTA------GAGT-AAAAGGGTAT----ATTATATTCGTGCAAA-------AGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGGGTCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTA
droEug1	scf7180000409146:2460-2689 -		ACTGTTCGAAGTGA----ACAGT--AGGG----CCTGG----TGT---GT---CCATATT----------------------------------------------------CT---------------------------------------------------------TCGGTGC----------------------AATA----AGTATTTCAG---------ATTATAAATGGGATG-------------------------------------------------CACT---------------------------------------------------------------------------------TCATTATACCCGTTACTCGTA------GAGT-AAAAGGGTAT----ACTAGATTCGTTGAAA-------AGTATTTAACAGATAGAAGGAAG--TTTGCGACCCTATAAAGTATATATATTCTTGATCAGAAACAATAGCGAAGTCGATTGAGCTATGTCCGTCTGTC
dm3	chr3R:81654-81881 +		CACAGTACATATGT-------ACATACA-TACACAG----TACATACAGCC----------------------------------------------------------------ATACAGGC-------------A-------------------------------------------TAA--------------------A----AGTCCAACTT------------------------ATCCAT---------------TA--------------------------AAACCT-----------------------------------------------------------TCCA------------AGCCTAATTATACCCGTTACTCGTA------GAGT-AAAAGGGTAT----ACTCGATTCGTTGAAA-------AGTATGTAACAAGCAGAAGGAAGCGTTTCCGACCATATAAAGTATATATGTTTTTGATCAGG------AGCCGAGTCGATCTGGCTATGTCCGTCTGTC
droSim2	x:20493415-20493618 -		TTG---------------------------------------CAT------------TT----------------------------------------------------TCTCTTA--GTGTGCAA--G------CA--------A-----------------------------CAACAA--------------------A----AATACTTCGC------------------------ATTCAT---------------TA--------------------------TGATTTTT----------------------------------------------------------------------------------ATACCCGTTACTCGTA------GAGT-AAAATGGTAT----ACTAAATTCGTTGAAA-------AGTATATAACAGGCTGAAGGAAGCGTTTCCGACC-AATAAAGTATATATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGGACATGTCCGTCTGTC
droSec2	scaffold_55:145031-145234 -		TTG---------------------------------------CAT------------TT----------------------------------------------------TCTCTTA--GTGTGCAA--G------CA--------A-----------------------------CAACAA--------------------A----AATACTTCGC------------------------ATTCAT---------------TA--------------------------TGATTTTT----------------------------------------------------------------------------------ATACCCGTTACTCGTA------GAGT-AAAATGGTAT----ACCAAATTCGTTGAAA-------AGTATATAACAGGCTGAAGGAAGCGTTTCCGACC-AATAAAGTATATATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGGACATGTCCGTCTGCC
droYak3	v2_chrUn_6976:6455-6687 +		GAATTAAGT-----------CAA--AAC---GGTTT----T-------GCC------ATACACA--T-ATT------------------------------------------------------T--GTG----CATTT-------------------------------TTGG------GACAATCTGGTTAATTTTCATAA----A---------TATTTGG-----------------------------------------------------------------AAAATTTTT----------------------------------------------------------------------------------ATACCCGTTACTCGTA------GAGT-AAAAGGGTAT----ACTAGATTCGTTGAAA-------AGTATGTAACAGGCAGAGGGAAGCGTTTCCGACCATATAAAGTATATATATTCTTGATCAGGATTAGTAGCCGAGTCGATCTGGCCATGTCCGTCTGTC
droEre2	scaffold_4845:1488048-1488266 -		TTA---------------------------------------CAT------------TT----------------------------------------------------GCTAATATA--------GCGAGTTCAGC-----------------------------------TTGT----------------------GGTACTTAG-------TT------------------------ATTCAT---------------TAGCGGTAATTGACGT-----------TTAATATTA----------------------------------------------------------------------------------ATACTCGTTACTCGTA------AAGT-AAGAGGGTAT----ACTAGATTCGTTGAAA-------AGTTTGTAACAGGTAGAAACAAGCGTTTCCGACCATATAAAGTATATATATTCTTGATAAGGATCAAAAACCGAGTCGATCTGGCCATGTCTGTCTGTC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

CATGAACGAATTGA----CGTAC--AAG---GGCGT----TGCAT------------ATC----------------------------------------------------CTCATATA--------GCG----CATGGTGAGGCAAT-----------------------------------------------------------------TTGA------------------------ATTCAT---------------TACATA----------TCACTTCG---GTTCTTTTT----------------------------------------------------------------------------------ATACCCTGAACCCATTAAAAATGGGT-ATAAGGGTAT----ATTGTATTTGTGCAAAATCCAAATGTATGTAACAGGCAGAAGGAAGCACCTCCGACCCCATAAATTATATATATTCTTGATCAGCATCAATAGCCGAGTCGATCTAGCCATGTCCGTCTGTC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAATGGGT-ATAAGGGTAT----AT........................................................................................................................	24	20	2.80	56	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	54	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAATGGGT-ATAAGGGTAT----ATTG......................................................................................................................	26	20	1.80	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCAGAAGG...............................................................................	26	20	1.30	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGCATCAATAGCC...........................	26	20	0.90	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCAGA..................................................................................	23	20	0.85	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCAGAA.................................................................................	24	20	0.45	9	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGCATCAATAGCC...........................	25	20	0.40	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGGAAGCACC........................................................................	26	19	0.37	7	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAATGGGT-ATAAGGG.................................................................................................................................	19	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGGAAGCAC.........................................................................	25	20	0.35	7	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCGAGTCGATCTAGCCATG..........	26	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAAGCACC........................................................................	25	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGCATCAATAGCCG..........................	27	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGCAGAAGGAAGCACC........................................................................	24	20	0.20	4	1	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGATCTAGCCATGTCCGT.....	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAAGCA..........................................................................	23	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAAGCACCTC......................................................................	27	16	0.13	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGCACCTCCGACCCC...............................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTAGCCATGTCCGT.....	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCAC.........................................................................	22	20	0.10	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAATCCAAATGTATGTAACAGGCA....................................................................................	27	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCACCTCCG....................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGATCTAGCCATG..........	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATCTAGCCATGTCCGTCTGTC	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCATGTCCGTC....	26	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCATCAATAGCCGAGTCG.....................	28	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCACCTCC.....................................................................	24	20	0.10	2	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGCAGAAGGAAGCAC.........................................................................	23	20	0.10	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCACCTCCGA...................................................................	28	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGCAGAAGGAAGCACCTCCG....................................................................	28	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAGGAAGCACCTCCGACCCCAT.............................................................	25	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAAGCACCTCCGACCCC...............................................................	24	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCACCTCC.....................................................................	26	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAGGAAGCACCTCCGACCCC...............................................................	23	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTAACAGGCAGAAGGAAGCACCT.......................................................................	28	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGGAAGCACCT.......................................................................	27	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAATAGCCGAGTCGATCTAGCCA............	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATTCTTGATCAGCATCAATAG.............................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCATGT.........	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCCAAATGTATGTAACAGGC.....................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCATCAATAGCCGAGTCGATCTAG...............	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGTCGATCTAGCCATGTCCG......	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTAACAGGCAGAAGGAAGCAC.........................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGATCTAGCCA............	22	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATCTAGCCATGTCCGTCTG..	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGTCCG......	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TTTT----------------------------------------------------------------------------------ATACCCTGAACCCATTAAAAATG............................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAATGGGT-ATAAGGGTAT----ATT.......................................................................................................................	25	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGACCCCATAAATTATATATATTCTA............................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCACCTC......................................................................	23	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................AAAAATGGGT-ATAAGGGTAT----ATTGTA....................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATATTCTTGATCAGCATCAATA..............................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCATCAATAGCCGAG........................	25	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGCATCAATAGCC...........................	23	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAATCCAAATGTATGTAACAGGC.....................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAATGTATGTAACAGGCAGAAGGA..............................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAATGTATGTAACAGGCAGAAGG...............................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGCATCAATAGCCGAGTCGA....................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTAGCCATGTCCGTCTG..	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAAGGAAGCACCTCCGACCC................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGCATCAATAGCCGAG........................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCAGAAGGAAGCACCTCC.....................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCACC........................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCAGAAGGAAGCACCTCCGACCC................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCATG..........	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAATAGCCGAGT.......................	25	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTAACAGGCAGAAGGAAGCA..........................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCAAATGTATGTAACAGGCAGAAG................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................TGGGT-ATAAGGGTAT----ATTGTATT..................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCATGTCCGT.....	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................GTAT----ATTGTATTTGTGCAAAATCCAAA...................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGGAAGCACCTCCGACC.................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................T-ATAAGGGTAT----ATTGTATTTGTGC.............................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAGCCGAGTCG.....................	24	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCACCTCCGACC.................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CTGGAACGATTTGA----TT-------------T---ATTT-------G--------------------------------------------------------------------------------------------------------------------------------C----------------------ATTT----A---------TTTTCGGAAAATATAAAATTGATGATT-------------------TCTTA----------TC-----A---ATTATTTTT----------------------------------------------------------------------------------ATACCCTGAACCCATTGAAAATGGGAAATCAGGGTAT----AATGGTTTTGT-GAAA-------AGTATGTAACAGGCAGAAGGAATCATCGCAGACCCCATAAAGTATATATATTCTTGATCAGGACGACGAGCTGAGTCGATATAGCCCTGTCCGTCTGTC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................TGAAAATGGGAAATCAGGGTA...............................................................................................................................	21	20	0.35	7	7	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAATGGGAAATCAGGGTAT----AATGG.....................................................................................................................	28	20	0.15	3	3	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATATATATTCTTGATC........................................	20	20	0.10	2	2	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGACGACGAGCT...........................	21	20	0.10	2	0	0	0	0	2	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAGGAATCATCGCAGACC.................................................................	21	20	0.05	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................ATTTTT----------------------------------------------------------------------------------ATACCCTGAACCCAT....................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................ATTATTTTT----------------------------------------------------------------------------------ATACCCTGAACCCATTG..................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GAAA-------AGTATGTAACAGGCAGAAGG...............................................................................	25	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATCATCGCAGACCCCATA............................................................	22	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAATGGGAAATCAGG..................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1

droGri2

CATAAATTACATGT-------------------------------------------------------------------------------------------------------------TGTAA--G------CA--------G-----------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAATAAATTTATTTTACAATTTTTGT--TTTTTATACCCTGAACCCATTGAAAATGGGTAAAAAGGGTAT----AATGGCTTTGTGCAAA-------TGTATGCAACAGGCTGAAGGAAGCATCTCCGACCCCATAAAGTATATATATTCTTGATCAGGGTCAACAGTCGAGTCGATATAGCCATGTTCCTCTGTC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

CATAAATGTGCTGA----CA-------------C---ATGA-------GCCAT----AAC--CA--T-------------------------------------------------GAGA--------GCC----CATAGCATGACCATATGTACCTTACATA---------------------------------------------TGTACTTCTT------------------------ATGTAT---------------T---------------------------CAGTTTTT----------------------------------------------------------------------------------ATACCATACACCCATA------GGGT-GAAATGGTAT----ATTAAAGTCGCCAAAA-------TGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATATATATTCATGATCAGGATCAAAAACCGAGTCGATCTAGCCATGTCCGTCTGTC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.....ATGTGCTGA----CA-------------C---ATGA-------GCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
..............................................................CA--T-------------------------------------------------GAGA--------GCC----CATAGCATGACCATA..........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTAACAGGCAGAAGGAAGCATC........................................................................	27	20	0.85	17	0	0	0	17	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTAGCCATGTCCGTCTGTC	21	20	0.50	10	10	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGGAAGCATCTCC.....................................................................	23	20	0.30	6	0	0	0	6	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATTCATGATCAGGATCA.................................	21	6	0.17	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................TTTTT----------------------------------------------------------------------------------ATACCATACACCCATA------GGGT-........................................................................................................................................	25	20	0.15	3	0	0	0	3	0
......................................................................................................................................................................................................................................................................................................................................................................................................................T-GAAATGGTAT----ATTAAAGTCGCC..............................................................................................................	23	20	0.15	3	0	3	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAA-------TGTATGTAACAGGCAGAAGG...............................................................................	26	20	0.15	3	0	3	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACCGAGTCGATCTAGCCATGTCCGT.....	28	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTCCGACCCCACAAAGTATATA...................................................	25	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCGACCCCACAAAGTATATATAT................................................	26	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCGAGTCGATCTAGCCAT...........	21	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGAGTCGATCTAGCCATGT.........	21	20	0.05	1	0	1	0	0	0

dp5

ATTA-AAG------------TAC--AAA---AGACT----TGCAA------------CTC----------------------------------------------------CTCA----GTC-------------A-------------------------------------------GTT--------------------A----AGAGCGTTGG------------------------ATTCA------------------ACGGAAATTGTGTT-----------ATCATTTTT----------------------------------------------------------------------------------ATACCCGGTACTCAAA----ATGAGT-GTAAGGGTAT----ATTAGATTTGTGATAAAAGTGGATGTGTGTAATATCGAGAAGGAAGCGTTTTCGACCCCATAAAGTACATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTC----TGTC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATAAAAGTGGATGTGTG.............................................................................................	23	5	3.20	16	0	5	0	0	0	0	2	5	4	0
ATTA-AAG------------TAC--AAA---AGACT----TGCAA------------CTC----------------------------------------------------C...............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	2	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATAAAAGTGGATGTGT..............................................................................................	22	5	1.60	8	0	3	0	0	0	0	0	2	3	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAATAGCCGAGTCG.....................	21	20	1.60	32	0	32	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTCG.....................	25	20	0.90	18	0	0	0	0	0	0	18	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATAAAAGTGGATGT................................................................................................	20	5	0.40	2	0	0	0	0	0	0	0	0	2	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATAAAAGTGGATGTG...............................................................................................	21	5	0.40	2	0	1	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATTGAG...............	20	20	0.35	7	0	7	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTCGAT...................	27	20	0.35	7	0	0	0	0	0	0	0	7	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGCATCAATAGCC...........................	25	20	0.30	6	0	0	6	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATTCTTGATCAGCATC..................................	20	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................T----ATTAGATTTGTGATAAAAGTGGATG.................................................................................................	26	5	0.20	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATAAAAGTGGATGTGTGT............................................................................................	24	5	0.20	1	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTGTGATAAAAGTGGATG.................................................................................................	23	5	0.20	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGATTGAGCC.............	21	20	0.20	4	0	0	4	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAAAAGTGGATGTGTG.............................................................................................	19	5	0.20	1	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGATAAAAGTGGATGTGTGT............................................................................................	22	5	0.20	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATAAAAGTGGATGTGTGTA...........................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAAGTGGATGTGTGTAA..........................................................................................	21	5	0.20	1	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAAGTGGATGTGTGTA...........................................................................................	20	5	0.20	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTTGTGATAAAAGTGGA...................................................................................................	20	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGATAAAAGTGGATGTGT..............................................................................................	21	5	0.20	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGATAAAAGTGGATG.................................................................................................	20	5	0.20	1	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAAGCGTTTTCGACCCC...............................................................	21	12	0.17	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGATAAAAGTGGATGTGTGTAAA.........................................................................................	25	8	0.13	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATTGAGCCATGTC----....	20	20	0.10	2	0	0	0	0	0	0	2	0	0	0
..........................................................................................................................................................................................................................................................................................................T----------------------------------------------------------------------------------ATACCCGGTACTCAAA----ATGAGT-........................................................................................................................................	23	10	0.10	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATTGAGCC.............	18	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGTCGATTGAGCCATG..........	19	20	0.10	2	0	0	0	0	0	0	0	0	2	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGTTTTCGACCCCAT.............................................................	19	13	0.08	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTTTTCGACCCCATAA...........................................................	19	13	0.08	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTGAGCCATGTC----TGT.	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAGCCGAG........................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATTCTTGATCAGCATCAATAGCCG..........................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAATAGCCGAGT.......................	19	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTTGATCAGCATCAAT...............................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGCATCAATAG.............................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATAAAGTACATATATTCTT............................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATATATTCTTGATCAGCATCAA................................	25	20	0.05	1	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATTGAGCCATGTC----TGTC	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATTGAGCCA............	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAGCCGAGTCG.....................	24	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATTGAGCCAT...........	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

ATGA-ATGAA----GAGC---------------C---GTTT-------G----AAGTCTTTGCAGTA-----------------------------------------TTTTCTCTAA--TTGT---------------------------------------------------------------------------------------------T------------------------ATTTATTTTGATACTACAAATG--------------------------ATTATATTT----------------------------------------------------------------------------------ATACCCGATACTCAAA----ATGAGT-ATTGGGGTAT----ATTAGATTTGTGGTAAAAGTGGATGTATGTAACGTCCAGAAGGAATCGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCCTGTCTGTCTGTC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGCATCAATAGCC...........................	20	20	0.45	9	0	9	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATGTA...............................................................................................	19	12	0.33	4	0	1	0	0	0	3
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGTGGATGTATGTAACG........................................................................................	21	12	0.08	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATGTA...............................................................................................	21	12	0.08	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGATGTATGTAACGTC......................................................................................	19	13	0.08	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATGTAA..............................................................................................	20	16	0.06	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATAGCCGAGTCGATTGA................	21	20	0.05	1	1	0	0	0	0	0

droAna3

ATAA-AAAAATTTT----TGTAA--AGC---GAT---GTT--TAT------------ATCCTCACATACCAGTATATCA----------------------------------------------------------------GACCAA-----------------------------------------------------------------T-CA---------------A--------A-T----TC----CGAAAT--T---------------------------AACTTATT----------------------------------------------------------------------------------ATACCC-----TTGCA------G-------AGGGTAT----TATAATTTTGGTCAAA-------AGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTGTC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATATGAGCATGTCCGTCTG..	23	20	1.65	33	33	0	0	0	0	0
.......................................................................GTATATCA----------------------------------------------------------------GACCAA-----------------------------------------------------------------T-CA---------------A--------A-T----TC----CGAAAT--.........................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACGCAGTGAAGGAGACATC........................................................................	22	20	0.70	14	0	14	0	0	0	0
..................................................................................................................................................CAA-----------------------------------------------------------------T-CA---------------A--------A-T----TC----CGAAAT--T---------------------------AACTTATT----------------------------------------------------------------------------------...................................................................................................................................................................	26	20	0.65	13	0	13	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCACCTCCT...........................	22	20	0.25	5	0	5	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCAGTGAAGGAGACATCTCCG....................................................................	24	20	0.20	4	4	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTCCGACCCTATAAAGTA.......................................................	21	20	0.20	4	4	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCTGAGTCGATATGAGCA............	21	20	0.15	3	0	0	0	0	0	3
................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAA-------AGTGTGCAACGCAGTGAAGGA..............................................................................	27	20	0.15	3	0	0	0	0	3	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCAAA-------AGTGTGCAACGCAGTGAAGGA..............................................................................	28	20	0.10	2	0	2	0	0	0	0
..................................................................................................................................................CAA-----------------------------------------------------------------T-CA---------------A--------A-T----TC----CGAAAT--T---------------------------AACTTA.......................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAA-------AGTGTGCAACGCAGTGAA.................................................................................	22	20	0.05	1	0	0	1	0	0	0
...........................................................................ATCA----------------------------------------------------------------GACCAA-----------------------------------------------------------------T-CA---------------A--------A-T----TC----CGAAAT--T---------------------------AACT.........................................................................................................................................................................................................................................................	29	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCAAA-------AGTGTGCAACGCAGT....................................................................................	22	20	0.05	1	1	0	0	0	0	0

droBip1

AGTTAAAAT--AAAAAGG---------------C---GTTT-------GTT------ATTCACAATAAC---------------------------------------TTT------------------------------TAT-----------------------------------------------TTA--------------AT----TTTT------------------------TTCAATTTC----G----------------------------------GTACTTTTT----------------------------------------------------------------------------------ATTCCCAGTATTTGTA------GAGT-ACAAGGGTAGTACAATTGTTTTCGTGTTAA-------TGTATGTAACATAGAGAAGTAATCATCTCCGACCACATTATGTATACATACTCTTGATCAGCATCAACAA-CGAGTCGATACAGCCATGTCCTTCCTTT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TATTAAAGAATTCAAAGA---------------C---GTTG-------G----AC--AT----------------------------------------------------TATTTT------------------------AAAACAAA-----------------------------------------------------------------ATGT------------------------ATCCAC---------------TA--------------CG-----A---ACCCTTTTT----------------------------------------------------------------------------------ATACCCT-----TG---------------CAGGGTAT----TATAATTTCAGTCAGA-------AGTTTGCAACGCAGTTAAGGAGACCTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCAACAGCCAAGTCGATCTAGCCATGTCCGTCTGTC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CATGAGCTT--GAC-------------C---GGAAC----T-------ACC------AT------------------------------------------------------------------------------------------ACGTGCCGGAAATGCGTGATTTTCGGTGT----------------------GGTAGCGCA-------TT------------------------ATTTA------------------CCGATCGATATGAG-----------CTCCTTTTT----------------------------------------------------------------------------------ATGCCC-----TTGCA------GAGC-A-AAGGGTAT----TATAATTTAAGGCAGA-------AGTTTGCAACGCAGTGAAGGCGACACCTCAGACCCCATAAAGTATATATATTCTTGATCAGCATCACGATTTGAATCGAA----ATATGTCCGTCTGTC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATAA-------------------------------------------------------T----------------------------------------------------CTC--A--GTTTGCAA--A------AAGATAAACAAA-----------------------------------------------------------------ATGT------------------------AATCAT---------------TTTTTA----------TGAGCTTGCTCGTTCTTTTT----------------------------------------------------------------------------------ATACCCGTTACTCGTA------AAAT-AAAAGGGTAT----ATTGAATTCGTTGAAA-------AGTATGTAACAGGTAAAAGGAAGCGCTTTCGACCATATAAAGTATATATACTCTTGATCAGGATCAATAGCCGAGTCGATCTAGCCATGTCCGTCTGTC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CATGATTTTATTGA----CG--------G----C-CTGCTT-------G----ACATATC----------TTTATCTCAAGTAAACCATGTTCGAAATTCTTTAGGTCGCC------------------------------TA-------------------------------------------------------------------------------------------------------------------------------------------CTTGA---TTTGTGTTT----------------------------------------------------------------------------------ATACCCGTTACTCGTA------GAGT-AAAAGTGTAT----ATTGTATTCGTGCAAA-------AGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATATATTCTTGTTCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TGAGATAAT--CAA----TGTAAATAGC---G-CCCTT----CAC------------GCCC--T--G-ATT------------------------------------------------------CAA--G------CA--------------------------------------CAATGA--------------------A----AATATTTTCA------------------------ATT----TC----CGAAATATC--------------------------ATTCTATTT----------------------------------------------------------------------------------ATACCCGTTACTTGTA------GAGT-AAAAGGGTAT----ACTAGATTCGCCGGAA-------AGTATGTAACATGTTTAA-----CGTTTCCGACCTAATAAAGTATATATATTCTTGATCAGGGTCACTAGCCGAGTCGATCTAGCAATGTTCGTCTGTC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GGA-------TTGA----AATAT--AAGG--ATC---GTT--TTT------------AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATACCCCTGCAGAGGGTATTATAATTTCAGTCATATGTTTAACGCAGTTAACTTCCTTTCT------------TG--TTTTTATACCCGTTACTCGTA------GAGT-AAAAGGGTAT----ATTATATTCGTGCAAA-------AGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGGGTCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ACTGTTCGAAGTGA----ACAGT--AGGG----CCTGG----TGT---GT---CCATATT----------------------------------------------------CT---------------------------------------------------------TCGGTGC----------------------AATA----AGTATTTCAG---------ATTATAAATGGGATG-------------------------------------------------CACT---------------------------------------------------------------------------------TCATTATACCCGTTACTCGTA------GAGT-AAAAGGGTAT----ACTAGATTCGTTGAAA-------AGTATTTAACAGATAGAAGGAAG--TTTGCGACCCTATAAAGTATATATATTCTTGATCAGAAACAATAGCGAAGTCGATTGAGCTATGTCCGTCTGTC	Size	Hit Count	Total Norm	Total
No Reads

dm3

CACAGTACATATGT-------ACATACA-TACACAG----TACATACAGCC----------------------------------------------------------------ATACAGGC-------------A-------------------------------------------TAA--------------------A----AGTCCAACTT------------------------ATCCAT---------------TA--------------------------AAACCT-----------------------------------------------------------TCCA------------AGCCTAATTATACCCGTTACTCGTA------GAGT-AAAAGGGTAT----ACTCGATTCGTTGAAA-------AGTATGTAACAAGCAGAAGGAAGCGTTTCCGACCATATAAAGTATATATGTTTTTGATCAGG------AGCCGAGTCGATCTGGCTATGTCCGTCTGTC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGG------AGCCGAGTCGATC..................	22	1	46.00	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	7	0	29	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGG------AGCCGAGTCGATCTGG...............	25	1	22.00	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAAA-------AGTATGTAACAAGCAGA..................................................................................	26	5	20.00	100	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	1	0	6	0	7	2	2	0	0	0	1	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	0	0	0	0	3	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	3	10	0	0	0	0	0	0	0	0	20	6	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGG------AGCCGAGTCGAT...................	21	1	18.00	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	9	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGG------AGCCGAGTCGATCT.................	23	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	5	0	0	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGG------AGCCGAGTCGATCTGGC..............	26	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTATATATGTTTTTGATCAGG------A..............................	26	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTATATATGTTTTTGATCAGG------AGC............................	28	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	0	0	0	1	1	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGAAA-------AGTATGTAACAAG......................................................................................	21	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGAAGGAAGCGTTTC......................................................................	18	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAAGCAGC..................................................................................	20	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AGTATGTAACAAGCAGA..................................................................................	18	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TTG---------------------------------------CAT------------TT----------------------------------------------------TCTCTTA--GTGTGCAA--G------CA--------A-----------------------------CAACAA--------------------A----AATACTTCGC------------------------ATTCAT---------------TA--------------------------TGATTTTT----------------------------------------------------------------------------------ATACCCGTTACTCGTA------GAGT-AAAATGGTAT----ACTAAATTCGTTGAAA-------AGTATATAACAGGCTGAAGGAAGCGTTTCCGACC-AATAAAGTATATATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGGACATGTCCGTCTGTC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAA-------AGTATATAACAGGCTGAAGGA..............................................................................	26	1	7.00	7	0	0	0	0	0	0	1	3	0	1	2	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------AGTATATAACAGGCTGAAGGA..............................................................................	24	1	5.00	5	0	0	0	0	0	0	2	0	2	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------AGTATATAACAGGCTGAAGGAAG............................................................................	26	1	3.00	3	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTGGACATGTC........	27	3	2.67	8	0	0	4	1	0	0	1	0	0	0	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCGAGTCGATC..................	24	20	2.20	44	0	0	0	0	0	0	0	0	0	0	44	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCGAGTCGATCTGGA..............	27	2	2.00	4	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTGGACATG..........	25	3	2.00	6	0	0	2	0	0	0	0	0	1	1	2	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTGGACATGT.........	26	3	2.00	6	0	0	2	0	0	0	0	1	0	0	2	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATCTGGACATGTCCGTC....	27	2	2.00	4	0	0	0	0	0	0	1	2	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATAACAGGCTGAAGGAAGCGTT........................................................................	25	1	2.00	2	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTTGATCAGGATCAATAGCCGAGT.......................	28	20	1.75	35	0	0	0	0	0	0	33	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGATCTGGACATGTCCGTCTGTC	26	4	1.75	7	0	0	0	1	0	0	2	0	0	0	4	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAT----ACTAAATTCGTTGAAA-------AG.................................................................................................	24	2	1.50	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATATAACAGGC.....................................................................................	24	4	1.25	5	0	0	0	0	0	0	1	0	3	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAAA-------AGTATATAACAGG......................................................................................	22	4	1.25	5	0	0	0	1	0	4	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGACC-AATAAAGTATATATATTCT.............................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTGGACATGTCCGTCTG..	26	2	1.00	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAT----ACTAAATTCGTTGAAA-------AGTA...............................................................................................	26	2	1.00	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCTGAAGGAAGCGTTTCCGA...................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTGGACA............	23	3	1.00	3	0	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATATAACAGGCTGAA.................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGTTTCCGACC-AATA............................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCAATAGCCGAGTCGATCTGGACA............	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AGTATATAACAGGCTGAAGGAAGCGTT........................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTGGACATGTCCGTC....	28	2	1.00	2	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAACAGGCTGAAGGA..............................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------AGTATATAACAGGCTGAAGGAAGC...........................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATAACAGGCTGAAGGAAG............................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TCGTA------GAGT-AAAATGGTAT----ACTAAA....................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATAACAGGCTGAAGGAAGCG..........................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TCGTA------GAGT-AAAATGGTAT----ACTAAAT...................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TCGTA------GAGT-AAAATGGTAT----ACTAAATT..................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAAA-------AGTATATAACAG.......................................................................................	21	4	1.00	4	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAAA-------AGTATATAACAGGCTGA..................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATCTGGACATGTCCGTCTGTC	24	4	0.75	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTGGACAT...........	24	3	0.67	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGC............................	20	20	0.55	11	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTGGACATGTCCGTC....	26	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTGGACATGTCCGT.....	25	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTGGACATGTCCGTCTGTC	25	4	0.50	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATCTGGACATGTCCGT.....	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGATCTGGACATGTCCGTCTGT.	25	4	0.50	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAATAGCCGAGT.......................	26	20	0.35	7	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAGGAAGCGTTTC......................................................................	17	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTGGACATGTCCGTC....	21	7	0.29	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGGATCAATAGCC...........................	25	20	0.25	5	0	0	0	0	0	0	0	0	1	0	4	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGGATCAATAGCCGAGT.......................	30	20	0.25	5	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTGGACATGTCCG......	22	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAATAGCCGAG........................	25	20	0.20	4	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTGGACAA...........	24	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTGGACATGTC........	22	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTGGACATG..........	20	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATCTGGACATGT.........	18	6	0.17	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGGATCAATAGCCGA.........................	27	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATATATATTCTTGATCAGGA....................................	24	20	0.15	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TTTT----------------------------------------------------------------------------------ATACCCGTTACTCGTA------GAGT-........................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATCTGGACATG..........	17	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTGGACATGTCCGT.....	20	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATCTGGACATGTCCGTC....	20	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................GGTAT----ACTAAATTCGTTG.............................................................................................................	18	18	0.11	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCTGGACATGTCCGTC....	19	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAGTCGAT...................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCGAGTCGAT...................	23	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGGATCAATAGCCGAG........................	29	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCTGGACATGTCCGT.....	18	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATATTCTTGATCAGGA....................................	22	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGACATGTCCGTC....	17	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTTGATCAGGATCAATAGCCGA.........................	26	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCGAGTCGATC..................	23	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTGGACATGTC........	17	11	0.09	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGACATGTCCGTCTGT.	18	11	0.09	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGACATGTCCGTC....	16	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATATTCTTGATCAGGATCAAT...............................	25	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCGAGTCGATCTC................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTGG...............	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAGTCGA....................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGCCGAGTCGAT...................	29	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCAATAGCCGAGTCGATCTGG...............	25	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATATTCTTGATCAGGATCAA................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGGATCAATAGCCGAG........................	23	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGGATCAATAGCCGAGTCGAT...................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATCTGG...............	16	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TCGTA------GAGT-AAAATG..................................................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TTTT----------------------------------------------------------------------------------ATACCCGTTACTCGTA------GAGT-A.......................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAAT...............................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGGATCAATA..............................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCGAGTCGATCTG................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................TTT----------------------------------------------------------------------------------ATACCCGTTACTCGTA------GAGT-AAA.....................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTATATATATTCTTGATCAGGA....................................	25	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

TTG---------------------------------------CAT------------TT----------------------------------------------------TCTCTTA--GTGTGCAA--G------CA--------A-----------------------------CAACAA--------------------A----AATACTTCGC------------------------ATTCAT---------------TA--------------------------TGATTTTT----------------------------------------------------------------------------------ATACCCGTTACTCGTA------GAGT-AAAATGGTAT----ACCAAATTCGTTGAAA-------AGTATATAACAGGCTGAAGGAAGCGTTTCCGACC-AATAAAGTATATATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGGACATGTCCGTCTGCC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTGGACATGTCCGTC....	26	4	0.25	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTGGACATGTCCGT.....	25	4	0.25	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTGGACATGTCCG......	24	7	0.14	1	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGGATCAATAGCCGAGTC......................	25	20	0.10	2	2	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCAATAGCCGAGTCGAT...................	21	20	0.05	1	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGGATCAATAGC............................	25	20	0.05	1	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATATTCTTGATCAGGATC..................................	21	20	0.05	1	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGGATCAATAGCCGA.........................	22	20	0.05	1	1	0	0	0
.......................................................................................................................................................................................................................................................................................................TTTT----------------------------------------------------------------------------------ATACCCGTTACTCGTA------GAG..........................................................................................................................................	23	20	0.05	1	1	0	0	0

droYak3

GAATTAAGT-----------CAA--AAC---GGTTT----T-------GCC------ATACACA--T-ATT------------------------------------------------------T--GTG----CATTT-------------------------------TTGG------GACAATCTGGTTAATTTTCATAA----A---------TATTTGG-----------------------------------------------------------------AAAATTTTT----------------------------------------------------------------------------------ATACCCGTTACTCGTA------GAGT-AAAAGGGTAT----ACTAGATTCGTTGAAA-------AGTATGTAACAGGCAGAGGGAAGCGTTTCCGACCATATAAAGTATATATATTCTTGATCAGGATTAGTAGCCGAGTCGATCTGGCCATGTCCGTCTGTC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAGGGAAGCGTTTCC.....................................................................	26	14	0.57	8	0	0	0	0	0	0	0	0	0	0	8
....TAAGT-----------CAA--AAC---GGTTT----T-------GCC------ATACACA--..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAGGGAAGCGTTTCCGA...................................................................	28	13	0.38	5	0	0	0	0	0	0	0	0	0	0	5
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAGGGAAGCGTTTCCG....................................................................	27	13	0.23	3	0	0	0	0	0	0	0	0	0	0	3
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCAGAGGGAAGCGTTTCCGACCA................................................................	26	13	0.15	2	0	2	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................TTTTT----------------------------------------------------------------------------------ATACCCGTTACTCGTA------GAG..........................................................................................................................................	24	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTAACAGGCAG...................................................................................	26	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATTAGTAGCCGAGTCGAT...................	26	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATTAGTAGCCGAG........................	25	7	0.14	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGGCAGAGGGAAGCGTTTCCGAC..................................................................	28	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGGGAAGCGTTTCCGACCAT...............................................................	24	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCAGAGGGAAGCGTTTCCGAC..................................................................	24	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCAGAGGGAAGCGTTTCCGACC.................................................................	25	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAGGGAAGCGTTTCC.....................................................................	19	15	0.07	1	0	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAGGGAAGCG..........................................................................	21	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAGGGAAGCGTTTCCT....................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTTGAAA-------AGTATGTAAC.........................................................................................	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................TACTCGTA------GAGT-AAAAGGGTAT----A.........................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

TTA---------------------------------------CAT------------TT----------------------------------------------------GCTAATATA--------GCGAGTTCAGC-----------------------------------TTGT----------------------GGTACTTAG-------TT------------------------ATTCAT---------------TAGCGGTAATTGACGT-----------TTAATATTA----------------------------------------------------------------------------------ATACTCGTTACTCGTA------AAGT-AAGAGGGTAT----ACTAGATTCGTTGAAA-------AGTTTGTAACAGGTAGAAACAAGCGTTTCCGACCATATAAAGTATATATATTCTTGATAAGGATCAAAAACCGAGTCGATCTGGCCATGTCTGTCTGTC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
............................................T------------TT----------------------------------------------------GCTAATATA--------GCGAGTTCAGC-----------------------------------TTG...............................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	1	0	0	0	0	0	0
...............................................................................................................................................................................TGT----------------------GGTACTTAG-------TT------------------------ATTCAT---------------TAGCGG...................................................................................................................................................................................................................................................................................	26	3	0.33	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................GTAT----ACTAGATTCGTTGAAA-------AGTT...............................................................................................	24	13	0.08	1	0	0	0	0	1	0	0

dvi_6815

scaffold_12875:14116105-14116255 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads