ID:

dvi_68

 Coordinate:

scaffold_13047:750788-750860 +

 Confidence:

confident

 Class:

Mirtron

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.2 -19.0 -19.0

Flybase annnotation

intron [Dvir\GJ23644-in]; CDS [Dvir\GJ23644-cds]; CDS [Dvir\GJ23644-cds]

No Repeatable elements found

Sense Strand Reads

CTGGTCATGGGTGTAGCGTTGCTGACGCTGGCACTCTGGGCGTACATTAGGTGGGTATCGGCAACTGAAAACTCAATAACTGAGCTTCCAAACTAATTCTCAATCCATTTGCCATACCCACAGATATAGCGGTGAGTTGAGCGACTTTGGTGGCAAGCTGGACGAATTTGCAA

**************************************************((((((((.(((((.((....((((.....)))).....................)).)))))))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047

female body

 SRR060664

9_males_carcasses_total

 SRR060681

Argx9_testes_total

 SRR2096055

Ovary_Min_43		 SRR060679

140x9_testes_total

 SRR2096059

Ovary_Min_164		 SRR060672

9x160_females_carcasses_total

 SRR2096056

Ovary_Min_46		 SRR060678

9x140_testes_total

 SRR060671

9x160_males_carcasses_total

 SRR2096060

Ovary_Min_193		 SRR060676

9xArg_ovaries_total

 SRR060667

160_females_carcasses_total

 SRR2096057

Ovary_Min_50		 V053

head

 SRR060677

Argx9_ovaries_total

 SRR2096058

Ovary_Min_98		 V116

male body		 SRR060668

160x9_males_carcasses_total

 SRR060665

9_females_carcasses_total

 SRR060680

 9xArg_testes_total

 SRR060674

9x140_ovaries_total

 SRR060675

140x9_ovaries_total

 SRR060669

160x9_females_carcasses_total

 M028

head

 SRR060666

160_males_carcasses_total

 SRR2096013

Ovary_Strain_9_oxidized		 SRR2096014

Ovary_Strain_160_oxidized		 SRR1106730

embryo_16-30h

 M061

embryo

 SRR060686

Argx9_0-2h_embryos_total

 SRR060684

140x9_0-2h_embryos_total

 SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		 SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers		 SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		 SRR060683

160_testes_total

 M027

male body		 SRR060682

9x140_0-2h_embryos_total

 SRR060685

9xArg_0-2h_embryos_total

 SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		 SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		 SRR060658

140_ovaries_total

 SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		 SRR060659

Argentina_testes_total

 SRR060689

160x9_testes_total

 SRR060670

9_testes_total

 SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		 V047

embryo

 SRR060687

9_0-2h_embryos_total

 SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		 SRR060688

160_ovaries_total

 SRR060655

9x160_testes_total

 SRR060673

9_ovaries_total

 SRR1106722

embryo_10-12h

 SRR1106729

mixed whole adult body

 SRR060654

160x9_ovaries_total

 SRR060657

140_testes_total

 SRR060660

Argentina_ovaries_total

 SRR1106723

embryo_12-14h

 SRR1106726

embryo_14-16h

 SRR1106725

embryo_14-16h

 GSM1528803

follicle cells		 SRR060656

9x160_ovaries_total

 SRR1106724

embryo_12-14h

 SRR1106727

larvae

 SRR1106721

embryo_10-12h

 SRR060662

9x160_0-2h_embryos_total

 SRR1106717

embryo_6-8h

 SRR1106720

embryo_8-10h

 SRR060661

160x9_0-2h_embryos_total

 SRR1106713

embryo_0-2h

 SRR1106714

embryo_2-4h

 SRR060663

160_0-2h_embryos_total

 SRR1106716

embryo_4-6h

 SRR1106728

larvae
.....................................................................................................AATCCATTTGCCATACCCACAG.................................................. 22 0 1 2060.00 2060 487 130 118 39 105 31 83 17 90 82 21 93 57 21 31 68 23 9 56 43 55 56 37 29 12 36 14 27 4 13 19 13 3 7 8 6 5 14 18 9 11 1 5 0 6 3 4 2 11 8 5 2 2 0 1 4 2 0 0 0 0 0 1 0 0 0 2 0 0 0 0 0 1 0 0
.....................................................................................................AATCCATTTGCCATACCCACAGT................................................. 23 1 1 811.00 811 47 75 62 12 50 8 43 3 49 43 1 34 38 3 31 36 2 11 24 38 18 18 16 20 1 14 19 10 4 4 10 8 1 0 1 7 1 6 5 1 0 0 2 1 3 8 0 3 2 0 3 3 2 0 0 1 0 0 0 0 1 0 2 2 1 1 1 0 0 0 0 1 0 0 0
..................................................GTGGGTATCGGCAACTGAAAACTCA.................................................................................................. 25 0 1 650.00 650 11 0 0 110 1 119 1 107 2 0 81 0 1 87 0 0 72 1 0 1 1 2 1 0 20 0 2 3 2 1 0 0 0 1 0 2 7 1 0 0 0 1 3 1 0 0 0 2 0 0 0 0 0 0 1 0 0 0 0 1 0 2 0 0 0 1 0 0 0 0 1 0 0 0 0
.....................................................................................................AATCCATTTGCCATACCCACA................................................... 21 0 1 436.00 436 187 22 13 3 12 5 12 3 10 15 1 8 5 0 22 5 2 0 14 8 5 4 12 8 6 3 0 8 2 3 2 2 2 2 4 2 5 0 0 2 1 0 3 0 1 0 4 0 0 2 0 0 0 0 4 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTATCGGCAACTGAAAACT.................................................................................................... 23 0 1 377.00 377 27 3 7 21 6 12 2 16 2 0 24 3 4 14 5 4 22 35 0 2 2 3 0 2 3 3 5 5 14 8 1 0 10 3 4 5 1 0 0 6 8 16 5 14 1 0 5 3 1 4 1 1 1 4 1 1 6 5 2 3 2 0 1 2 1 1 1 1 0 0 0 1 0 1 0
..................................................GTGGGTATCGGCAACTGAAAACTC................................................................................................... 24 0 1 214.00 214 2 0 3 22 1 31 3 39 3 1 30 1 3 13 2 0 16 8 0 1 0 1 0 1 7 0 0 0 2 0 0 0 0 0 0 2 3 0 1 0 0 5 0 1 1 2 2 0 0 0 1 0 0 0 1 0 1 3 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TCCATTTGCCATACCCACAGT................................................. 21 1 1 139.00 139 14 9 16 1 11 2 4 0 7 4 0 2 9 0 7 10 1 1 5 3 2 2 4 4 0 4 0 1 1 0 1 1 0 0 0 1 0 2 0 1 0 0 0 0 2 1 0 2 0 0 3 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................ATCCATTTGCCATACCCACAG.................................................. 21 0 1 133.00 133 75 7 1 0 3 1 4 1 7 1 1 2 5 0 1 5 0 0 3 0 1 3 3 3 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATCCATTTGCCATACCCACAGA................................................. 23 0 1 130.00 130 37 5 1 2 4 1 5 0 4 3 0 4 2 1 3 6 1 0 4 4 2 3 2 1 0 4 15 0 0 0 0 0 1 3 4 0 0 2 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................ATCCATTTGCCATACCCACAGT................................................. 22 1 1 124.00 124 21 9 2 2 7 0 3 3 6 0 4 5 9 2 12 1 0 5 1 0 4 1 8 3 0 4 0 0 0 4 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................AATCCATTTGCCATACCCAC.................................................... 20 0 1 85.00 85 32 8 2 0 3 0 11 0 1 3 0 0 4 0 5 1 0 1 3 2 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TCCATTTGCCATACCCACAG.................................................. 20 0 1 69.00 69 26 4 8 0 4 1 3 0 2 1 0 0 5 0 2 2 0 0 3 1 2 0 0 2 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATCCATTTGCCATACCCACAC.................................................. 22 1 1 52.00 52 23 2 1 0 2 0 0 1 0 3 0 4 1 0 2 1 0 0 0 1 0 2 1 0 0 1 0 3 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTATCGGCAACTGAAA....................................................................................................... 20 0 1 51.00 51 4 0 3 0 3 0 1 0 1 0 0 1 2 0 3 0 1 25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TCCATTTGCCATACCCACAGTT................................................ 22 1 1 45.00 45 3 7 5 1 1 0 3 0 3 5 0 2 2 0 0 2 0 0 1 2 2 1 1 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTATCGGCAACTGAAAA...................................................................................................... 21 0 1 44.00 44 8 0 0 0 0 0 7 0 0 1 0 2 3 0 0 1 0 13 0 4 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTATCGGCAACTGAAAACTCAA................................................................................................. 26 0 1 41.00 41 0 0 0 4 0 4 1 0 1 0 0 3 0 0 0 2 0 0 0 0 1 1 2 0 1 0 5 1 0 0 2 5 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 0 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTATCGGCAACTGAAAAC..................................................................................................... 22 0 1 37.00 37 3 0 0 1 1 0 0 1 0 0 0 0 1 0 1 1 0 13 0 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 1 0 0 1 1 0 0 0 0 1 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTATCGGCAACTGAAAACTCAAT................................................................................................ 27 0 1 35.00 35 3 0 1 6 1 1 0 4 0 0 5 3 0 1 0 1 0 0 0 0 0 0 1 0 2 0 1 0 0 0 1 0 1 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................ATCCATTTGCCATACCCACA................................................... 20 0 1 34.00 34 27 1 0 0 0 0 0 0 0 0 0 1 1 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTATCGGCAACTGAA........................................................................................................ 19 0 1 31.00 31 4 0 3 0 2 0 0 2 0 0 0 0 1 0 0 0 0 13 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTATCGGCAACTGA......................................................................................................... 18 0 1 23.00 23 3 0 0 6 0 0 0 4 0 0 0 1 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................ATCCATTTGCCATACCCACAGA................................................. 22 0 1 23.00 23 2 2 1 0 2 0 0 0 2 1 0 3 2 0 1 0 0 1 0 0 0 0 3 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................CATCCATTTGCCATACCCACAG.................................................. 22 1 1 18.00 18 0 0 0 0 0 0 3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 2 0 0 0 0 0 0 0 0 1 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTATCGGCAACTGAAAACTCAATAACT............................................................................................ 31 0 1 17.00 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 2 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATCCATTTGCCATACCCA..................................................... 19 0 1 16.00 16 7 0 1 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 1 1 0 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CATTTGCCATACCCACAG.................................................. 18 0 1 14.00 14 6 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................CAATCCATTTGCCATACCCACAG.................................................. 23 0 1 14.00 14 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TCCATTTGCCATACCCACAGA................................................. 21 0 1 14.00 14 4 2 0 0 1 0 0 0 2 2 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................GCTTCCAAACTAATTCTC........................................................................ 18 0 1 14.00 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................CCATTTGCCATACCCACAG.................................................. 19 0 1 14.00 14 6 0 0 0 0 0 0 2 0 0 0 1 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATCCATTTGCCATACCCACAGTC................................................ 24 2 1 13.00 13 0 0 1 0 2 0 1 0 1 0 0 0 0 0 0 0 0 1 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATCCATTTGCCATACCCACAGTT................................................ 24 1 1 13.00 13 1 0 1 0 0 0 1 0 1 0 0 1 2 0 2 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTATCGGCAACTGAAAACTCAATA............................................................................................... 28 0 1 10.00 10 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATCCATTTGCCATACCCACCGT................................................. 23 2 1 10.00 10 0 2 0 0 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................TCGGCAACTGAAAACTCAATAACTGA.......................................................................................... 26 0 1 9.00 9 0 0 0 0 0 1 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CATTTGCCATACCCACAGT................................................. 19 1 1 9.00 9 4 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................CCATTTGCCATACCCACAGT................................................. 20 1 1 9.00 9 3 0 1 0 0 0 0 0 0 0 0 1 2 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATCCATTTGCCATACCCACCG.................................................. 22 1 1 9.00 9 0 0 0 0 0 0 2 0 0 2 0 0 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTATCGGCAACTGAAAACTCAATAACTGAGCTTCCAAACT............................................................................... 44 0 1 8.00 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 2 0 0 0 0 0 0 1 0 0 0 1
.....................................................................................................AATCCATTTGCCATCCCCACAG.................................................. 22 1 1 7.00 7 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGGGTATCGGCAACTGAAAACT.................................................................................................... 22 0 1 7.00 7 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................CGGCAACTGAAAACTCAATAACTGA.......................................................................................... 25 0 1 7.00 7 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATCCATTTGCCATACCCACAGTAA............................................... 25 2 1 7.00 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................CATCCATTTGCCATACCCACA................................................... 21 1 1 6.00 6 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GGGGGTATCGGCAACTGAAAACT.................................................................................................... 23 1 1 6.00 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATCCATTTGCCATACCCCCAG.................................................. 22 1 1 6.00 6 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTATCGGCAACTGAAAACTCAATAACTGA.......................................................................................... 33 0 1 6.00 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATCCATTTGCCATACCCACAA.................................................. 22 1 2 5.50 11 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................ATTTGCCATACCCACAGA................................................. 18 0 1 5.00 5 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................TCGGCAACTGAAAACTCAATAAC............................................................................................. 23 0 1 5.00 5 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................CATCCATTTGCCATACCCACAGA................................................. 23 1 1 5.00 5 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATCCATTTGCGATACCCACAG.................................................. 22 1 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................AATTCTCAATCCATTTGCCATACCCACAG.................................................. 29 0 1 5.00 5 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATCCATTTGCCATACCCACAT.................................................. 22 1 1 5.00 5 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGGGTATCGGCAACTGAAAACTC................................................................................................... 24 1 1 4.00 4 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATCCATTTGCCATACCCACACA................................................. 23 1 1 4.00 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................CCATTTGCCATACCCACA................................................... 18 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGGGTATCGGCAACTGAAAACTCA.................................................................................................. 25 1 1 4.00 4 0 0 0 0 0 0 0 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................GGTATCGGCAACTGAAAACTCAATAAC............................................................................................. 27 0 1 4.00 4 0 0 0 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATCCATTTGCCATACCCACAGC................................................. 23 1 1 4.00 4 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................GAGGGTATCGGCAACTGAAAACT.................................................................................................... 23 1 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATCTATTTGCCATACCCACAG.................................................. 22 1 1 4.00 4 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AACCCATTTGCCATACCCACAG.................................................. 22 1 1 4.00 4 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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.........................................................................................................CATTTGCCATACCCACAGA................................................. 19 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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......................................................................................................................................AGTTGAGCGACTTTGGTGGCAAGCTG............. 26 0 1 3.00 3 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................GGTATCGGCAACTGAAAAC..................................................................................................... 19 0 1 3.00 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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..................................................GTGGGTATCGGCAACTGAAAACTCAATAACTGAG......................................................................................... 34 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................GTTGCTGACGCTGGCACTCTGGG..................................................................................................................................... 23 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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......................................................................................................ATCCATTTGTCATACCCACAGT................................................. 22 2 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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.....................................................................................................AATCCATTTGCCATACCCACAGAA................................................ 24 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................AATCAATTTGCCATACCCACAGT................................................. 23 2 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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............................................................................TAACTGAGCTTCCAAACTAATTCT......................................................................... 24 0 1 2.00 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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.............................................................................................................................ATAGCGGTGAGTTGAGCGACTTTGGT...................... 26 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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..................................................................................................CTCAATCCATTTGCCATACCCACAG.................................................. 25 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................ATCCATTTGCCATACCCACAGTT................................................ 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTATCCGCAACTGAAAACT.................................................................................................... 23 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTATCGGCAACTGCAAACTC................................................................................................... 24 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................CAATCCATTTGCCATACCCACAGT................................................. 24 1 1 2.00 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATCCATTTGCCATACCCACC................................................... 21 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATCCATTTGCGATACCCACAGT................................................. 23 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TGCTGACGCTGGCACTCTGGGC.................................................................................................................................... 22 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATTCATTTGCCATACCCACAG.................................................. 22 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................TCTCAATCCATTTGCCATACCCACAG.................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGTGTATCGGCAACTGAAAACT.................................................................................................... 23 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATCAATTTGCCATACCCACAG.................................................. 22 1 1 2.00 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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....................................................................................CTTCCAAACTAATTCTCAATCCATTTGC............................................................. 28 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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......................................................................................................ATTCATTTGCCATACCCACAGT................................................. 22 2 1 2.00 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................CGGCAACTGAAAACTCAATAAC............................................................................................. 22 0 1 2.00 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................CATCCATTTGCCATACCCACAGAAA............................................... 25 2 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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..............................................................AACTGAAAACTCAATAACTGAGCT....................................................................................... 24 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................AACTGAAAACTCAATAACTGA.......................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATCCATTTGCCATATCCACAGT................................................. 23 2 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATCCATTTACCATACCCACAGT................................................. 23 2 1 2.00 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATTCTCAATCCATTTGCCATACCCA..................................................... 25 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TATCCATTTGCCATACCCACA................................................... 21 1 1 2.00 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATCCATTTACCATACCCACAG.................................................. 22 1 1 2.00 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATCCATTTGCCATACACACAGT................................................. 23 2 1 2.00 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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.....................................................................................................AAGCCATTTGCCATACCCACAGT................................................. 23 2 1 2.00 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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.....................................................................................................AGTCCATTTGCCATACCCACAGT................................................. 23 2 1 2.00 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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.....................................................................................................AATCCATTTGCCATCCCCACAGT................................................. 23 2 1 2.00 2 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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..................................................GTGGGTATCGGCAACTGAAAACTCAAC................................................................................................ 27 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................ATCCATTTGCCATACCCACAA.................................................. 21 1 2 1.50 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................CCATTTGCCATACCCACAC.................................................. 19 1 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTATCGGCAACTGAAAACTCAATAACTGAGCTTC..................................................................................... 38 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................CTCCATTTGCCATACCCACAGTTC............................................... 24 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................CAATAACTGAGCTTCCAAACTAAT............................................................................ 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATCCATTTGCCATACACACAG.................................................. 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGGGTATCGGCAACTGAAAACTC................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................CAATCCATTTGCCATACCCACAGAA................................................ 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGGGTATCGGCAACTGAAAACTCA.................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................ATCCGTTTGCCATACCCACAGT................................................. 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATCCATTTGCCATACCGACA................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTATCGGCCACTGAAAAC..................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................TTGCTGACGCTGGCACTCTGGG..................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTATCGGCAACTTAAAAC..................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................GGTATCGGCAACTGAAAACTCA.................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................GCTTCCAAACTAATTCTCA....................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................GCTTCCAAACTAATTCTCAATCCAT................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................TCAATCCATTTGCCATACCCACAGT................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................ATGGGTATCGGCAACTGAAAACT.................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTATCGGCAACTGAAAACTCAATAACTGAGCTTCCAAAC................................................................................ 43 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TCCATTTGCCATACCCACAGTTAAA............................................. 25 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTATCGGCAACTGAAAACTCAATAACTGGG......................................................................................... 34 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................GAGTTGAGCGACTTTGGTGGCAAGCT.............. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................ATTCCATTTGCCATACCCACAG.................................................. 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................ATCCATTTGCCATACCCACAGTAA............................................... 24 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATCCATTTGCCATACCCACACAAT............................................... 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTATCGGCAACTGAAAACTCAATAACTGAGCT....................................................................................... 36 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGCTATCGGCACCTGAAAACTT................................................................................................... 24 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATCCCTTTTCCATACCCACA................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATCCATTTGCTATACCCACAG.................................................. 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATCCATTTGCCATACCCACAGTTAT.............................................. 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................ATCCCATTTGCCATACCCACAG.................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TATCCATTTGCCTTACCCACAG.................................................. 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................GGTGAGTTGAGCGACTTTGGT...................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................CATTAGATATAGCGGTGAGTTGAGCGA............................. 27 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................TCTCAATCCATTTGCCATACCCACAGT................................................. 27 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TATCGGCAACTGAAAACTCAATA............................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGCTATCGGCAACTGAAAACTC................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GGGTATCGGCAACTGAAAAC..................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATCGATTTGCCATACCCACA................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................CAATCCATTTGCCATACCCA..................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TAATTCTCAATCCATTTGCCA........................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................ATCCATTTGCCGTACCCACAG.................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATCCATTTGCCATACCCTCAG.................................................. 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GGGGGTATCGGCACCTGAAAACTCAATAACTGAG......................................................................................... 34 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTATCGGCAACTAAAA....................................................................................................... 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................GCTTCCAAACTAATTCTCAATCCATTTGCCATACCCACAGT................................................. 41 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................CTGGCACTCTGGGCGTACATTAG........................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TCCATTTGCCATACCCACAGTA................................................ 22 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................CAATAACTGAGCTTCCAAA................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTATCGGCAAATGAAAACT.................................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTTGGTATCGGCAACTGAAAACTCAATAAC............................................................................................. 30 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TCCATTTGCCATACCCACCGT................................................. 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAGGTATCGGCAACTGAAAACTCA.................................................................................................. 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TCCATTTGCCATAACCACAGT................................................. 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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.....................................................................................................AATCCATCTGCCATACCCACAGT................................................. 23 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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........................................................................................CAAACTAATTCTCAATCCATTTG.............................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................ATCGGTGAGTTGAGCGACTTTGGT...................... 24 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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..................................................GTGGGTATCGGCAACTGAAAACTCAATAACTGAGAA....................................................................................... 36 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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...........................................................................ATAACTGAGCTTCCAAACTAATTCTC........................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................GGCACTCTGGGCGTACATTAGAT......................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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..................................................GTGGGTATCGGCAACTG.......................................................................................................... 17 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AGTCCATTTGCCATACCCACA................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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............................................................GCAACTGAAAACTCAATAACTGAGCTT...................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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.................................................................................................TTCCAATCCATTTGCCATACCCACAG.................................................. 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATCCATTTGCCATACCCACTG.................................................. 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................GCAACTGAAAACTCAATAACTGAGCTTCC.................................................................................... 29 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTATCGGCAACTGACAACTC................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................ATAGCGGTGAGTTGAGCGA............................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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.................................................................................................AAGCAATCCATTTGCCATACCCACAG.................................................. 26 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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......................................................................................................ATCCATTTGCCATACCCA..................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GTGTATCGGCAACTGAAAACTCAAT................................................................................................ 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................ATCCATTTGCCCTACCCACAG.................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTATCGGCACCTGAAAACTCC.................................................................................................. 25 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................CTCCATTTGCCATACCCACAG.................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................GGTATCGGCAACTGAAAACT.................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTATCGGCAACTAAAAAC..................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................CTCAATCCATTTGCCATACCCACAGA................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GACCAGTACCCACATCGCAACGACTGCGACCGTGAGACCCGCATGTAATCCACCCATAGCCGTTGACTTTTGAGTTATTGACTCGAAGGTTTGATTAAGAGTTAGGTAAACGGTATGGGTGTCTATATCGCCACTCAACTCGCTGAAACCACCGTTCGACCTGCTTAAACGTT

**************************************************((((((((.(((((.((....((((.....)))).....................)).)))))))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060657

140_testes_total

 SRR060663

160_0-2h_embryos_total

 SRR060671

9x160_males_carcasses_total

 V116

male body		 V053

head

 SRR060666

160_males_carcasses_total

 SRR060672

9x160_females_carcasses_total

 M027

male body		 SRR060668

160x9_males_carcasses_total

 SRR060667

160_females_carcasses_total

 SRR1106729

mixed whole adult body

 M047

female body
.........................................................................................................................................ACTCGCTGAAGCCACCGTT................. 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................CTCGCTGAAGCCACCGTTA................ 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................GAACTCGCTGAAGCCACCGTTA................ 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................AACTCGCTGAAGCCACCGTTAC............... 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................AACTCGCTGAAGTCACCGTTA................ 21 3 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................TCGCTGAAGCCACCGTTA................ 18 2 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................AGGTATGATGAAGAGTAAGGT.................................................................. 21 3 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................TGTGTTAGTGATTCGAAGGT................................................................................... 20 3 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................CAAACGGTGTCGGTGTCTATAT............................................. 22 3 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................GTTTGAGTTAGAGTTAGCTAAA............................................................... 22 3 9 0.11 1 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................ATTGACTCGGAGGTTGGAG.............................................................................. 19 3 11 0.09 1 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................TCGCCACTAAACTCG............................... 15 1 11 0.09 1 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................TAAGGGGATGGGTGTCTAT............................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droVir3 scaffold_13047:750738-750911 + dvi_68 confident CTGGTCATGGGTGTAGCGTTGCTGACGCTGGCACTCTGGGCGTACATTAGGTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----ACTGAGCTTCC--------------------A----AACTAA---TT-----CTCAATCCATTTGCCATACCCACAGATATAGCGGTGAGTTGAGCGACTTTGGTGGCAAGCTGGACGAATTTGCAAC
droMoj3 scaffold_6540:4746485-4746662 + dmo_1815 confident CTAATCATGGGCGTGGCGCTGCTGACGCTGGCGCTCTGGGCATACATCAGGTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAGCCCAACAGGTGAGCGAGCTCCC--------------------A----AACTAA---CT-----CTCCATCCATTTGCCATACCCACAGGTATAGCGGCGAGCTGAGCGATTTCGGCGGAAAGCTGGATGAGTTTGCAAC
droGri2 scaffold_14906:5563610-5563770 - CTGGTCATGGGTGTGGCGCTGCTAACACTGGCACTCTGGGCCTACATAAGGTGACTCTCCA----ATAACTCTTGG------------------------------------------------------------------------------------------------------------------------------------------CTA-AACATAATC------ACTA-----AACCGA---TT--C---CATATTC-----------GTATAGATATAGCGGCGAGCTGAGCGACTTTGGTGGCAAGCTGGACGACTTTGCCAC
droWil2 scf2_1100000004902:9643171-9643331 - CTGGTTATGGGCGTGGCCCTACTGACCCTTGCCCTGTGGTCTTACATTAGGTAAGAGTTAA----TC-------------------------------------------------------------------------------------------------GAA--------------------------TGTTCGTAT-------------------AAACAT------TT---ATTGAATTGG---CT--G---CTTTTATT----------TTACAGATACAGCGGTGAGTTGAGCGACTTTGGTGGCAAGCTGGATGACTTTGCCAC
dp5 2:1779220-1779388 - CTGGTGATGGGCGTAGCCCTGCTGACGCTTGCACTCTGGGCGTACATCAGGTAAGAGCATTC-----------------------------------------------------------------------------------------------------GTAA--------------------------AACCCGAAA-------------------AAAGAT------TTCCCATCCAACTGA---GAGTCTCCTCGATCCA----------TTACAGGTACAGCGGCGAGTTGAGCGATTTCGGTGGCAAATTGGATGAGTTTGCCAC
droPer2 scaffold_7:1932989-1933157 - CTGGTGATGGGCGTAGCCCTGCTGACGCTTGCACTCTGGGCGTACATCAGGTAAGAGCATTC-----------------------------------------------------------------------------------------------------GTAA--------------------------AACCCGAAA-------------------AGAGAT------TTCCCATCCAACTGA---GAGTCTCCTCGATCCA----------TTACAGGTACAGCGGCGAGTTGAGCGATTTCGGTGGCAAATTGGATGAGTTTGCCAC
droAna3 scaffold_13340:4715778-4715938 - CTTGTGATGGGCGTGGCGCTGCTAACGCTGGCCCTATGGGCTTACATCAGGTAAGATTAAGAA--AT----------------------------------------------------------------------------------------------------------------------------------------------AACCCTTTGTAGAAATAT------ATCCT----AAG---AAAC---C---ATTATCAT----------TTACAGATACAGTGGCGAGCTGAGCGACTTTGGCGGCAAGTTGGATGACTTTGCAAC
droBip1 scf7180000396359:474012-474177 + CTTGTGATGGGAGTGGCGTTGCTAACGCTAGCTCTATGGGCATACATCAGGTAAGTTTAAAAA--AA--T---------------------------------------ACTT------------------------------------------------------------------------------------------------ATTGTTAAAAA---AATA------TTAAA----ACTTAC---CTCCA---CTTCTCCT----------TTACAGATACAGTGGAGAGCTGAGCGACTTTGGTGGCAAGCTGGACGACTTCGCAAC
droKik1 scf7180000302388:1746440-1746626 - CTGGTCATGGGCGTGGCTCTGCTCACGCTGGCTTTGTGGGCCTATATCAGGTGAGTGTAGTAC----ATTTTTTGATCGGACTTATGTCTCTACCTCCTACTTG-----ACTCC--TTGTG------------------------------------------------------------------ACTGA---------------------------------------------------CC---AATA---T---CCTTTCAT----------TTTCAGATATAGCGGCGAGCTGAGTGACTTTGGCGGCAAGTTGGATGATTTTGCCAC
droFic1 scf7180000454106:1853719-1853875 - TTGGTTATGGGAGTCGCTCTGCTCACGCTGGCTTTGTGGGCCTACATTAGGTATGTTCTTATA---T--GGCTACG------------------------------------------------------------------------------------------------------------------------------------------TTAGACGATCA-----------CT----AAT---CATT---T---AATTTCCT----------CTTTAGATATAGTGGCGAACTGAGCGACTTTGGTGGCAAGTTGGATGACTTTGCCAC
droEle1 scf7180000491194:509212-509291 + AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACT----ATC---GATC---T---CATTTCCA----------TTTCAGATATAGCGGCGAGCTGAGCGATTTCGGTGGCAAGTTGGATGAGTTTGCCAC
droRho1 scf7180000779488:553376-553588 + CTGGTCATGGGAGTGGCGCTGCTTACATTGGCTCTGTGGGCCTACATCAGGTAGGTTATTTT----------------------------------------GA--------------GGGGAGCCATTACAT--------TTT-----------------TCTTAAAAATAGGGCAAGGTCTGGCCATTAGTTGTTAATCCGGTGG-------------------TTTCACATTGCT----ATT---TATC---T---CTTTTTTA----------TTATAGATACAGCGGCGAGCTGAGCGATTTTGGTGGCAAGTTGGATGATTTTGCCAC
droBia1 scf7180000302402:4234745-4234800 + CTGGTCATGGGTGTGGCACTGCTGACGCTGGCTCTGTGGGCCTACATCAGGTGGGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415310:684861-685088 - CTGGTCATGGGTGTGGCGCTGCTCACGCTGGCTCTGTGGGCCTACATAAGGTGGGTTTAGATA---G--G-----------------------------------GATTACATAGCGTGACGGGTTGCACTTCTATTGTTCCCCACTCAAAGCTATATTACCTTTTGAAAATTGGTA----------ACTGAAACTAAATGCAAATA-------------------CTC---------------------TA---C---CCTCTCTA----------TTTTAGATATAGCGGCGAGCTGAGTGACTTTGGCGGCAAGTTGGATGACTTTGCTAC
droEug1 scf7180000409881:182755-182964 + CTGATTATGGGTGTGGCGCTGCTAACGCTGGCTCTGTGGGCCTATATCAGGTAAGTTCTATT----------------------------------------GGAAAATACTCT--TTGAGAAATTGCAATTT--------TTC-----------------ACTGAGAAAAAAGTTAATTGTTTAGAATTAATTGATTATTTAAATA-------------------CCC---------------------T----A---TATCTTCA----------TTTCAGATATAGCGGTGAGCTTAGTGACTTTGGGGGCAAGTTGGATGACTTTGCAAC
dm3 chr3R:20459043-20459205 + CTGGTTATGGGTGTGGCGCTTCTAACGCTGGCTCTGTGGGCCTACATTAGGTAGGTTGATTTAGCTT----------------------------------------------------------------------------------------------------------------------------------------------GAGCTTTTGATGATAATT------TTGCC----AAC---GATG---T---TTTATCAA----------TTCCAGATATAGCGGAGAGCTCAGCGACTTTGGCGGCAAGTTGGATGACTTTGCAAC
droSim2 3r:19988183-19988345 + TTGATCATGGGTGTGGCGCTTCTAACGCTGGCTCTGTGGGCTTACATTAGGTAGGTTGATGCAGCTT----------------------------------------------------------------------------------------------------------------------------------------------GAGCTTTTGATGATAATC------TTGCC----AAC---GATC---A---CTTTTCCA----------TTCCAGATATAGCGGAGAGCTCAGCGATTTTGGCGGCAAGTTGGATGACTTTGCAAC
droSec2 scaffold_0:20793428-20793590 + TTGATCATGGGTGTGGCGCTTCTAACGCTGGCTCTGTGGGCCTACATTAGGTAGGTTGATGCAGCTT----------------------------------------------------------------------------------------------------------------------------------------------GAGCTTTTGATGATAATC------TTGCC----AAC---GATC---A---CTTTTCCA----------TTCCAGATATAGCGGAGAGCTCAGCGACTTTGGCGGCAAGTTGGATGACTTTGCAAC
droYak3 3R:26038687-26038849 - CTGGTCATGGGTGTGGCGCTGCTCACGCTGGCTCTGTGGGCCTACATCAGGTAGGTTGATAA---CT----------------------------------------------------------------------------------------------------------------------------------------------GAGTTTTGGTTGAGAATC------TTGCC----AACTAA---CTTTA---CTTTTGAA----------TTGCAGATATAGCGGAGAGCTCAGTGACTTTGGCGGCAAGTTGGATGACTTTGCAAC
droEre2 scaffold_4820:7599483-7599645 - CTGGTCATGGGTGTGGCGCTACTCACGCTGGCTCTGTGGGCTTACATCAGGTAGGTTGATAA---TT----------------------------------------------------------------------------------------------------------------------------------------------GAGCTCTGGATGATAATC------TTGCC----AACTAA---CTCTT---CTTTTGAA----------TTGCAGATATAGCGGAGAGCTCAGTGACTTTGGCGGCAAGTTGGATGACTTTGCTAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CTGGTCATGGGTGTAGCGTTGCTGACGCTGGCACTCTGGGCGTACATTAGGTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----ACTGAGCTTCC--------------------A----AACTAA---TT-----CTCAATCCATTTGCCATACCCACAGATATAGCGGTGAGTTGAGCGACTTTGGTGGCAAGCTGGACGAATTTGCAACSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCACAG...................................................2212060.002060512487134212100021130433657562938283256379368901055511814613181911560000000000000000014231901427859391721233121118437
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCACAGT..................................................231811.00811114741320010010753814382420843432181634364950186267851023300100000010021010043311101910121123328100010
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCA.......................................................................................................................................251650.00650720111000011000001010000102100211012000000010000000100001001220122303011010787721198100001
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCACA....................................................211436.00436561873100000000022835148015120412851012513022020010000000000010000042022000843233025112422
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACT.........................................................................................................................................231377.003771327811161614501032340200213034262705001111001011000142223101143535055456211614221224845103
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTC........................................................................................................................................241214.002143720000151300001030121301010310302010011000000000000000101202800000022391316313000200
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACAGT..................................................211139.0013900140000000000093495414412421071121621101032000000000000000000127100100110012000000
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACAG...................................................211133.0013300751000000000070153301403325731100000101000000000000000000001000100101001100000
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCACAGA..................................................231130.00130003701000000010544241035032464421200000000000000000000001000030015040120111011013
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACAGT..................................................221124.00124002140100000100904913103218516742000010100000000000000000000012500000123200400000
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCAC.....................................................20185.0085123200100000000822430031100001130210010100000000000000000000005100000000000000000
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACAG...................................................20169.006900260000000000041053201300002242800101001000000000000000000002000000000001000000
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCACAC...................................................22152.005210231000000000021110003002141020100000100000000000000000000012000300001000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAA............................................................................................................................................20151.005100400000020000000210001000101303010000020000000000000000000032500000000010000010
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAA...........................................................................................................................................21144.004400800000030000042300017000210000000000000000000000000000000001300000000000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAA......................................................................................................................................26141.00410100211010000000000000101232101010502100000000000000000000000005101040004000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAAC..........................................................................................................................................22137.003700300111010000010101200001010110000000100000000000000000000111330000011000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAAT.....................................................................................................................................27135.00350230000000000000000000000131010100001000000000000000000000000001010164101500011
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACA....................................................20134.003410270000000000011010000000010000000000000000000000000000000002000000000000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAA.............................................................................................................................................19131.003100400400010000000100000000000203001000000000000000000000000001300000002000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGA..............................................................................................................................................18123.00230031000000000000000000010010000000000000000000000000000000030000001064120000000
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACAGA..................................................22123.00230020000000000020020101000330220100001000000000000000000000001100000000000000001
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----ACT.............................................................................................................................31117.00170000000000000000000000000000000000000000000000000042111000800000000000000000000
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCA......................................................19116.00160070000000000001001000202000010100100000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................CATTTGCCATACCCACAG...................................................18114.00140060000000000011200000001000002000100000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................CAATCCATTTGCCATACCCACAG...................................................23114.001400110000000000000001200000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACAGA..................................................21114.00140040000000000020000002000001210000000000000000000000000000000100000100000000000
...................................................................................................................................................................................................................GCTTCC--------------------A----AACTAA---TT-----CTC.........................................................................18114.001401100000000000000000000000000000000000000000000000000000001200000000000000000000
........................................................................................................................................................................................................................................................................CCATTTGCCATACCCACAG...................................................19114.00140060000000000002020000000010000000001000000000000000000000000000000002000000000
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCACAGTC.................................................24113.00130000020000000001000000100000123101000000000000000000000000000100000000000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----................................................................................................................................28110.00100000000000000000000000000000000000100120000000000000000000000000200000100010002
.........................................................TCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----ACTGA...........................................................................................................................2619.0090000000000000000000000000000000000100000000000000001000000000000000000021200002
.........................................................................................................................................................................................................................................................................CATTTGCCATACCCACAGT..................................................1919.0090040000000000000000011000100000000001000000000000000000000001000000000000000000
........................................................................................................................................................................................................................................................................CCATTTGCCATACCCACAGT..................................................2019.0090030000000000000020000000010001100000000000000000000000000001000000000000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----ACTGAGCTTCC--------------------A----AACT........................................................................................4418.0080000000000000000000000000000000000000000010000000010211010100000000000000000000
...................................................TGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACT.........................................................................................................................................2217.0070060000000000000000000000000000000000000000000000000000000000000010000000000000
..........................................................CGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----ACTGA...........................................................................................................................2517.0071210000000000000000000000000000000000000000000000000000000000000000010020000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----ACTGA...........................................................................................................................3316.0060000000000000000000000000000000000000000000000000020011001100000000000000000000
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCACAA...................................................2225.50110001000000000000001000000000010000120000000000000000000000000000010000001001011
..........................................................................................................................................................................................................................................................................ATTTGCCATACCCACAGA..................................................1815.0050020000000000000000000000001000000000000000000000000000000000000000000002000000
.........................................................TCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC..............................................................................................................................2315.0050000000000000000000000000000000000000000000000000000000000000000000005000000000
......................................................................................................................................................................................................................................................AA---TT-----CTCAATCCATTTGCCATACCCACAG...................................................2915.0050030000000000010000000000100000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCACAT...................................................2215.0050000000000000000001000200000000000000000000000000000000000010000000010000000000
........................................................................................................................................................................................................................................................................CCATTTGCCATACCCACA....................................................1814.0040040000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................GGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC..............................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000020002000000
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCACAGC..................................................2314.0040001000000000000001000000000000100000000000000000100000000000000000000000000000
..........................................................CGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----ACTGAGC.........................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000101000000000000200
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----ACTGAGC.........................................................................................................................3514.0040000000000000000000000000000000000000000000000000001000100200000000000000000000
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACAC...................................................2114.0040040000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................T-----CTCAATCCATTTGCCATACCCACA....................................................2513.0030030000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................AA---TT-----CTCAATCCATTTGCCATACCCA......................................................2613.0030020000000000000000000000001000000000000000000000000000000000000000000000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----ACTGAGCTT.......................................................................................................................3713.0030000000000000000000000000000000000000000000000001110000000000000000000000000000
.................GTTGCTGACGCTGGCACTCTGGGCGT...................................................................................................................................................................................................................................................................................................2613.0030010000000000000000000000000000000000000000000000000000000000000000000002000000
............................................................GCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC..............................................................................................................................2013.0030100000000000000000000000000000000000000000000000000000000000000000000200000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC..............................................................................................................................3013.0030000000000000000000000000000000000000000000000000110010000000000000000000000000
......................................................GTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACT.........................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000200100000
.........................................................................................................................................................................................................................................................................CATTTGCCATACCCACAGA..................................................1913.0030030000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACAGTC.................................................2213.0030000000000000000000000000001011000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................AGTTGAGCGACTTTGGTGGCAAGCTG..............2613.0030000000000000000000000000000030000000000000000000000000000000000000000000000000
.....................................................GGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAAC..........................................................................................................................................1913.0030100000000000000000000000000000000000000000000000000000000000000000020000000000
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACAC...................................................2022.5050011000000000000001002000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCAC.....................................................1912.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................CAATCCATTTGCCATACCCACAC...................................................2312.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................CTAA---TT-----CTCAATCCATTTGCC.............................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000020000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----ACTGAG..........................................................................................................................3412.0020000000000000000000000000000000000000000000000000000010000100000000000000000000
.................GTTGCTGACGCTGGCACTCTGGG......................................................................................................................................................................................................................................................................................................2312.0021000000000000000000000000000000000000000000000000000000000000000000000010000000
........................................................................................................................................................................................................................................................................CCATTTGCCATACCCACAGA..................................................2012.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................CGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000002000000000
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCACAGTA.................................................2412.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCACACC..................................................2312.0020010000000000000000000000000000000100000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCACAGAA.................................................2412.0020000000000000000000000000000000000000000000000001000000000000000001000000000000
....................................................GGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACT.........................................................................................................................................2112.0020000000000000000000000000000000001000000000000000000000000000000000000000100000
........................................................................................................................................................................................................TA----ACTGAGCTTCC--------------------A----AACTAA---TT-----CT..........................................................................2412.0020000000000000000000000100000000000100000000000000000000000000000000000000000000
........................................................ATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAAT.....................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000200000000
.............................................................................................................................................................................................................................................................................................ATAGCGGTGAGTTGAGCGACTTTGGT.......................2612.0020011000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACAGAA.................................................2212.0020010000000000000000000100000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................CTCAATCCATTTGCCATACCCACAG...................................................2512.0021010000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................CAATCCATTTGCCATACCCACAGT..................................................2412.0020000000000000000000000000000100000001000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCACC....................................................2112.0020000000000000000000000000000000000000000000000000000000000002000000000000000000
...................TGCTGACGCTGGCACTCTGGGC.....................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000200000000
............................................................................................................................................................................................................................................................T-----CTCAATCCATTTGCCATACCCACAG...................................................2612.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................CTTCC--------------------A----AACTAA---TT-----CTCAATCCATTTGC..............................................................2812.0020000000000000000000000000000000000000000000000000000000000000002000000000000000
..........................................................CGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC..............................................................................................................................2212.0020100000000000000000000000000000000000000000000000000000000000000000001000000000
..............................................................A----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----ACTGAGCT........................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000200000000000000000
..............................................................A----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----ACTGA...........................................................................................................................2112.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................A---TT-----CTCAATCCATTTGCCATACCCA......................................................2512.0020011000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACAGTC.................................................2312.0020000000000000000000000000000001100000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................ATTTGCCATACCCACAGT..................................................1812.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................CTAA---TT-----CTCAATCCATTTGCCATACCC.......................................................2712.0020200000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................CAATA----ACTGAGCTTCC--------------------A----AACT........................................................................................2112.0020000000000000000000000000000000000000000000000000000000200000000000000000000000
.........................................................TCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----ACTGAGC.........................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000001100000000000
....................................................................................................................................................................................................................................................................CAATCCATTTGCCATACCCAC.....................................................2112.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................ATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCA.......................................................................................................................................1912.0021000000000000000000000000000000000000000000000000000000000000000000000001000000
.......................................................................................................................................................................................................................................................A---TT-----CTCAATCCATTTGCCATACCCACAG...................................................2812.0020010000000000000000000100000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................TCAATCCATTTGCCATACCCACAG...................................................2412.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................CAATCCATTTGCCATACCCACA....................................................2212.0020010000000000000000000000000001000000000000000000000000000000000000000000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAAC.....................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000200000000000000
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACAA...................................................2121.5030000000000000000000000000000000000100000000000000000000000000000010000000000010
........................................................................................................................................................................................................................................................................CCATTTGCCATACCCACAC...................................................1921.5030030000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----ACTGAGCTTC......................................................................................................................3811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000
.....................................................................................................................................................................................................CAATA----ACTGAGCTTCC--------------------A----AACTAA---T..................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
...................................................TGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTC........................................................................................................................................2311.0010000000000000000000000010000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................CAATCCATTTGCCATACCCACAGAA.................................................2511.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCA.......................................................................................................................................2411.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..................TTGCTGACGCTGGCACTCTGGG......................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000010
.....................................................GGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCA.......................................................................................................................................2211.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................GCTTCC--------------------A----AACTAA---TT-----CTCA........................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................GCTTCC--------------------A----AACTAA---TT-----CTCAATCCAT..................................................................2511.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................TCAATCCATTTGCCATACCCACAGT..................................................2511.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----ACTGAGCTTCC--------------------A----AAC.........................................................................................4311.0010000000000000000000000000000000000000000000000000000000000100000000000000000000
.....................................................................................................................................................................................................................................................................................................GAGTTGAGCGACTTTGGTGGCAAGCT...............2611.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----ACTGAGCT........................................................................................................................3611.0010000000000000000000000000000000000000000000000000000000001000000000000000000000
..................................................................................................................................................................................................................................................................................................GGTGAGTTGAGCGACTTTGGT.......................2111.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................T-----CTCAATCCATTTGCCATACCCACAGT..................................................2711.0010000000000000000000100000000000000000000000000000000000000000000000000000000000
.......................................................TATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----................................................................................................................................2311.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
....................................................GGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAAC..........................................................................................................................................2011.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................CAATCCATTTGCCATACCCA......................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................TAA---TT-----CTCAATCCATTTGCCA............................................................2111.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................GCTTCC--------------------A----AACTAA---TT-----CTCAATCCATTTGCCATACCCACAGT..................................................4111.0010000000000000000000000000000000000000000000001000000000000000000000000000000000
...........................CTGGCACTCTGGGCGTACATTAG............................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACAGTA.................................................2211.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................CAATA----ACTGAGCTTCC--------------------A----AA..........................................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.TGGTCATGGGTGTAGCGTTGCTGACGCTG................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000100000000000
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACAGC..................................................2111.0010000000000000000000100000000000000000000000000000000000000000000000000000000000
..............................................................A----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----ACTGAGC.........................................................................................................................2311.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................GCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----ACTGA...........................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................A----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----ACTGAGCTTCC--------------------.................................................................................................2711.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCACAGTCT................................................2511.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................GGTGAGTTGAGCGACTTTGGTGGC....................2411.0010000000000010000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................CTCAATCCATTTGCCATACCCACAGT..................................................2611.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACA....................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGG..............................................................................................................................................1821.0020010000000000000000000000010000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................AACTCAATA----ACTGAGCTTCC--------------------A----AAC.........................................................................................2411.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
..............................................................A----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----ACTGAGCTT.......................................................................................................................2511.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................A---TT-----CTCAATCCATTTGCCATACCCACAC...................................................2811.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.............TAGCGTTGCTGACGCTGGCACTCTGGGCG....................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000001000000000000000000000000
.....................................................................................................................................................................................................................................................TAA---TT-----CTCAATCCATTTGCCATACCCA......................................................2711.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................GTTGAGCGACTTTGGTGGCAAGCTGGA............2711.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................T-----CTCAATCCATTTGCCATACCCAC.....................................................2411.0010000000000000000000000000000000000000000000000000000000000100000000000000000000
...................................................................................................................................................................................................................................................ACTAA---TT-----CTCAATCCATTTGCCATACC........................................................2711.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................ACTAA---TT-----CTCAATCCATT.................................................................1811.0010000000000000000000000000000000000000000000000000000000000000001000000000000000
.............TAGCGTTGCTGACGCTGGCACTC..........................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000010000
.......................................................................................................................................................................................................ATA----ACTGAGCTTCC--------------------A----AACT........................................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................C--------------------A----AACTAA---TT-----CTCAATCCATTTG...............................................................2311.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----ACTGAGAA........................................................................................................................3611.0010000000000000000000000000000000000000000000000000001000000000000000000000000000
......................................................GTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTC........................................................................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAAC..........................................................................................................................................2111.0010000000000100000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................ATA----ACTGAGCTTCC--------------------A----AACTAA---TT-----CTC.........................................................................2611.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTA........................................................................................................................................2411.0010000000000000000000000000001000000000000000000000000000000000000000000000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTG...............................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001
............................................................GCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----ACTGAGCTT.......................................................................................................................2711.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................ACTAA---TT-----CTCAATCCATTTGCCA............................................................2311.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACAGAA.................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000001000000000
........................................................................................................................................................................................................TA----ACTGAGCTTCC--------------------A----AACT........................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
............................................................GCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----ACTGAGCTTCC--------------------.................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000
.............................................................................................................................................................................................................................................................................................ATAGCGGTGAGTTGAGCGA..............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCACCC...................................................2211.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCA......................................................1811.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................GGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACT.........................................................................................................................................2011.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................CTCAATCCATTTGCCATACCCACAGA..................................................2611.0010000000000000000000000000100000000000000000000000000000000000000000000000000000
droMoj3
CTAATCATGGGCGTGGCGCTGCTGACGCTGGCGCTCTGGGCATACATCAGGTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAGCCCAACAGGTGAGCGAGCTCCC--------------------A----AACTAA---CT-----CTCCATCCATTTGCCATACCCACAGGTATAGCGGCGAGCTGAGCGATTTCGGCGGAAAGCTGGATGAGTTTGCAACSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.....................................................................................................................................................................................................................................................................CATCCATTTGCCATACCCACAG...................................................221505.005051354010113081
.....................................................................................................................................................................................................................................................................CATCCATTTGCCATACCCACAGT..................................................231320.00320173614282196
.....................................................................................................................................................................................................................................................................CATCCATTTGCCATACCCACA....................................................21198.009842214481
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACAGT..................................................21193.00931913613411
.....................................................................................................................................................................................................................................................................CATCCATTTGCCATACCCACAGA..................................................23156.005613400390
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACAG...................................................20155.005522232251
.....................................................................................................................................................................................................................................................................CATCCATTTGCCATACCCACAGC..................................................23147.00470000470
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACAG...................................................21132.00322201180
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAGCC.........................................................................................................................................23128.00282102158
.....................................................................................................................................................................................................................................................................CATCCATTTGCCATACCCAC.....................................................20128.002811001160
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACAGT..................................................22125.00258301130
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAGC..........................................................................................................................................22119.00191003123
.....................................................................................................................................................................................................................................................................CATCCATTTGCCATACCCACAC...................................................22116.00161000150
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACAGC..................................................21112.00120000120
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACAGA..................................................21110.0010700030
.........................................................................................................................................................................................................................................................................CATTTGCCATACCCACAGT..................................................1916.006011040
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACA....................................................2016.006500010
.........................................................................................................................................................................................................................................................................CATTTGCCATACCCACAG...................................................1816.006400110
....................................................................................................................................................................................................................................................................CCATCCATTTGCCATACCCACAGT..................................................2416.006000060
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACAC...................................................2116.006300030
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACAGC..................................................2215.005000050
.....................................................................................................................................................................................................................................................................CATCCATTTGCCATACCCACAA...................................................2215.005300020
....................................................................................................................................................................................................................................................................CCATCCATTTGCCATACCCACAG...................................................2314.004000040
..................................................................................................................................................................................................................................................................CTCCATCCATTTGCCATACCCACAG...................................................2514.004400000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAA.............................................................................................................................................1914.004300001
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACAGA..................................................2214.004400000
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACAGTA.................................................2213.003000030
........................................................................................................................................................................................................................................................................CCATTTGCCATACCCACAGT..................................................2013.003210000
........................................................................................................................................................................................................................................................................CCATTTGCCATACCCACAG...................................................1913.003100020
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAGCCC........................................................................................................................................2412.002000011
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAG...........................................................................................................................................2112.002100001
.....................................................................................................................................................................................................................................................................CATCCATTTGCCATACCCACACT..................................................2312.002000020
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACAGTC.................................................2211.001000001
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACACT..................................................2211.001000010
.....................................................................................................................................................................................................................................................................CATCCATTTGCCATACCCACACA..................................................2311.001000010
....................................................................................................................................................................................................................................................................CCATCCATTTGCCATACCCAC.....................................................2111.001000010
.............TGGCGCTGCTGACGCTGGCGCTCTGGGCA....................................................................................................................................................................................................................................................................................................2911.001000010
......................................................................................................................................................................................................AACAGGTGAGCGAGCTCCC--------------------.................................................................................................1911.001000010
..........................................................................................................................................................................................................GGTGAGCGAGCTCCC--------------------A----AACTAA---CT-----CTC.........................................................................2711.001100000
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACAGAA.................................................2211.001000010
...................................................TGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAGCC.........................................................................................................................................2211.001000010
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACAT...................................................2111.001000010
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACAGTA.................................................2311.001000010
............................................................................................................................................................................................................TGAGCGAGCTCCC--------------------A----AACTAA---CT-----CT..........................................................................2411.001010000
........................................................................................................................................................................................................................................................................CCATTTGCCATACCCACAGA..................................................2011.001000010
......................................................................................................................................................................................................AACAGGTGAGCGAGCTCC......................................................................................................................1811.001000010
.....................................................................................................................................................................................................................................................................CATCCATTTGCCATACCCA......................................................1911.001000010
..............................................................................................................................................................................................................................................................................................................GATTTCGGCGGAAAGCTGGAT...........2111.001000001
..........................................................................................................................................................................................................................................................................ATTTGCCATACCCACAGT..................................................1811.001000010
........................................................................................................................................................................................................................................................................CCATTTGCCATACCCACAGC..................................................2011.001000010
....................................................................................................................................................................................................................................................................CCATCCATTTGCCATACCCACA....................................................2211.001100000
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACACT..................................................2111.001100000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGA..............................................................................................................................................1811.001100000
....................................................................................................................................................................................................................................................................CCATCCATTTGCCATACC........................................................1811.001000010
...................................................................................................................................................................................................................................................................TCCATCCATTTGCCATACCCACAG...................................................2411.001000010
.....CATGGGCGTGGCGCTGCTG......................................................................................................................................................................................................................................................................................................................1911.001100000
...........................................................................................................................................................................................................................................................CT-----CTCCATCCATTTGCCATAC.........................................................2111.001100000
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACAC...................................................2011.001000010
.....................................................GGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAGCC.........................................................................................................................................2011.001000010
...........................................................................................................................................................................................ACTGAAAGCCCAACAGGTGAG..............................................................................................................................2111.001010000
............................TGGCGCTCTGGGCATACATCAG............................................................................................................................................................................................................................................................................................2211.001010000
.......................GACGCTGGCGCTCTGGGCA....................................................................................................................................................................................................................................................................................................1911.001100000
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACAGAA.................................................2311.001100000
............................................................................................................................................................................................................TGAGCGAGCTCCC--------------------A----AACTAA---C..................................................................................2111.001100000
............................................................................................................................................................................................................TGAGCGAGCTCCC--------------------A----AACTAA---CT-----C...........................................................................2311.001000100
..............GGCGCTGCTGACGCTGGCGCTCTGGGT.....................................................................................................................................................................................................................................................................................................2711.001100000
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACACAA.................................................2311.001100000
..................................................................................................................................................................................................................................................AACTAA---CT-----CTCCATCCATTTG...............................................................2111.001100000
........................................................................................................................................................................................................................................................................................................................GAAAGCTGGATGAGTTTGCAA.2111.001000001
.....................................................GGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAGCCCAACAGG..................................................................................................................................2711.001000010
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAA............................................................................................................................................2011.001000010
.........................................................................................................................................................................................................................................................................CATTTGCCATACCCACAGC..................................................1920.501000010
..........................................................................................................................................................................................................................................................................ATTTGCCATACCCACAGC..................................................1830.331000010
droGri2
CTGGTCATGGGTGTGGCGCTGCTAACACTGGCACTCTGGGCCTACATAAGGTGACTCTCCA----ATAACTCTTGG------------------------------------------------------------------------------------------------------------------------------------------CTA-AACATAATC------ACTA-----AACCGA---TT--C---CATATTC-----------GTATAGATATAGCGGCGAGCTGAGCGACTTTGGTGGCAAGCTGGACGACTTTGCCACSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
..GGTCATGGGTGTGGCGCTGCTAACA...................................................................................................................................................................................................................................................................................................................2511.00110
...........................CTGGCACTCTGGGCCTACATAAG............................................................................................................................................................................................................................................................................................2311.00110
......ATGGGTGTGGCGCTGCTAA.....................................................................................................................................................................................................................................................................................................................1911.00101
droWil2
CTGGTTATGGGCGTGGCCCTACTGACCCTTGCCCTGTGGTCTTACATTAGGTAAGAGTTAA----TC-------------------------------------------------------------------------------------------------GAA--------------------------TGTTCGTAT-------------------AAACAT------TT---ATTGAATTGG---CT--G---CTTTTATT----------TTACAGATACAGCGGTGAGTTGAGCGACTTTGGTGGCAAGCTGGATGACTTTGCCACSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
..........................................................................................................................................................................................................................................................................................GATACAGCGGTGAGTTGAGC................................2013.00300030
.........................................................................................................................................................................................................................................................................................................................CAAGCTGGATGACTTTGCC..1912.00220000
.................................................................................................................................................................................................................................................................................................................TTTGGTGGCAAGCTGGATGACT.......2211.00100001
.........................................................................................................................................................................................................................................TT---ATTGAATTGG---CT--G---CTTTTATT----------TTAC.....................................................2711.00100001
....................ACTGACCCTTGCCCTGTGGTC.....................................................................................................................................................................................................................................................................................................2111.00101000
............................................................................................................................................................................................................................................................................................TACAGCGGTGAGTTGAGC................................1811.00100010
...........................................................................................................................................................................................................................................................................................ATACAGCGGTGAGTTGAGCGACTTT..........................2511.00100010
......................................................................................................................................................................................................................................................................................................AGTTGAGCGACTTTGGTGGC....................2011.00100010
...........................................................................................................................................................................................................................................................................................ATACAGCGGTGAGTTGAGCGACTT...........................2411.00100010
......ATGGGCGTGGCCCTACTGACCCTTGC..............................................................................................................................................................................................................................................................................................................2611.00101000
...........................................................................................................................................................................................................................................................................................ATACAGCGGTGAGTTGAGC................................1911.00100010
......................................................................................................................................................................................................................................................................................................AGTTGAGCGACTTTGGTGG.....................1911.00101000
.........................................................................................................................................................................................................................................................................................................TGAGCGACTTTGGTGGCAAGCT...............2211.00100100
....................................................................................................................................................................................................................................................................................................................GGTGGCAAGCTGGATGTGC.......19200.05101000
dp5
CTGGTGATGGGCGTAGCCCTGCTGACGCTTGCACTCTGGGCGTACATCAGGTAAGAGCATTC-----------------------------------------------------------------------------------------------------GTAA--------------------------AACCCGAAA-------------------AAAGAT------TTCCCATCCAACTGA---GAGTCTCCTCGATCCA----------TTACAGGTACAGCGGCGAGTTGAGCGATTTCGGTGGCAAATTGGATGAGTTTGCCACSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................GTTGAGCGATTTCGGTGG.....................1811.0010100000000
...........................................................................................................................................................................................................................................................................................GTACAGCGGCGAGTTGAGC................................1911.0010100000000
.........GGCGTAGCCCTGCTGACGCTTGC..............................................................................................................................................................................................................................................................................................................2311.0010100000000
..............................GCACTCTGGGCGTACATCAG............................................................................................................................................................................................................................................................................................2011.0010100000000
..........................................................................................................................................................................................................................................................................................GGTACAGCGGCGAGTTGAGC................................2011.0010100000000
..........................GCTTGCACTCTGGGCGTAC.................................................................................................................................................................................................................................................................................................1911.0010010000000
.................CCTGCTGACGCTTGCACTCTGGGC.....................................................................................................................................................................................................................................................................................................2411.0010100000000
.............................................................................................................................................................................................................................................................................................ACAGCGGCGAGTTGAGCGATTTCGGT.......................2611.0010010000000
droPer2
CTGGTGATGGGCGTAGCCCTGCTGACGCTTGCACTCTGGGCGTACATCAGGTAAGAGCATTC-----------------------------------------------------------------------------------------------------GTAA--------------------------AACCCGAAA-------------------AGAGAT------TTCCCATCCAACTGA---GAGTCTCCTCGATCCA----------TTACAGGTACAGCGGCGAGTTGAGCGATTTCGGTGGCAAATTGGATGAGTTTGCCACSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.....................CTGACGCTTGCACTCTGGGCGT...................................................................................................................................................................................................................................................................................................2212.002200000
..............AGCCCTGCTGACGCTTGCACTCTGGGC.....................................................................................................................................................................................................................................................................................................2712.002110000
.......................GACGCTTGCACTCTGGGC.....................................................................................................................................................................................................................................................................................................1811.001100000
..........................................................................................................................................................................................................................................................................................................................AAATTGGATGAGTTTGCCA.1911.001001000
...GTGATGGGCGTAGCCCTGCTGACGCTTGC..............................................................................................................................................................................................................................................................................................................2911.001100000
................................ACTCTGGGCGTACATCAG............................................................................................................................................................................................................................................................................................1811.001100000
...........................................................................................................................................................................................................................................................................................GTACAGCGGCGAGTTGAGC................................1911.001000001
droAna3
CTTGTGATGGGCGTGGCGCTGCTAACGCTGGCCCTATGGGCTTACATCAGGTAAGATTAAGAA--AT----------------------------------------------------------------------------------------------------------------------------------------------AACCCTTTGTAGAAATAT------ATCCT----AAG---AAAC---C---ATTATCAT----------TTACAGATACAGTGGCGAGCTGAGCGACTTTGGCGGCAAGTTGGATGACTTTGCAACSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.....GATGGGCGTGGCGCTGCTAAC....................................................................................................................................................................................................................................................................................................................2113.003010020
CTTGTGATGGGCGTGGCGCTGCTAACGCT.................................................................................................................................................................................................................................................................................................................2911.001000010
.TTGTGATGGGCGTGGCGCTGCTAAC....................................................................................................................................................................................................................................................................................................................2511.001000001
......................................................................................................................................................................................................................................................................................................AGCTGAGCGACTTTGGCGGCAAGT................2411.001010000
..................................................................................................................................................................................................................................................................................................GGCGAGCTGAGCGACTTTGGCGGCA...................2511.001100000
...GTGATGGGCGTGGCGCTGC........................................................................................................................................................................................................................................................................................................................1911.001010000
................CGCTGCTAACGCTGGCCCTATGGG......................................................................................................................................................................................................................................................................................................2411.001100000
.......................................................................................................................................................................................................................................................................................................GCTGAGCGACTTTGGCGGCA...................2011.001010000
.TTGTGATGGGCGTGGCGCTGCTAACGC..................................................................................................................................................................................................................................................................................................................2711.001000001
droBip1
CTTGTGATGGGAGTGGCGTTGCTAACGCTAGCTCTATGGGCATACATCAGGTAAGTTTAAAAA--AA--T---------------------------------------ACTT------------------------------------------------------------------------------------------------ATTGTTAAAAA---AATA------TTAAA----ACTTAC---CTCCA---CTTCTCCT----------TTACAGATACAGTGGAGAGCTGAGCGACTTTGGTGGCAAGCTGGACGACTTCGCAACSizeHit CountTotal NormTotal
No Reads
droKik1
CTGGTCATGGGCGTGGCTCTGCTCACGCTGGCTTTGTGGGCCTATATCAGGTGAGTGTAGTAC----ATTTTTTGATCGGACTTATGTCTCTACCTCCTACTTG-----ACTCC--TTGTG------------------------------------------------------------------ACTGA---------------------------------------------------CC---AATA---T---CCTTTCAT----------TTTCAGATATAGCGGCGAGCTGAGTGACTTTGGCGGCAAGTTGGATGATTTTGCCACSizeHit CountTotal NormTotal
No Reads
droFic1
TTGGTTATGGGAGTCGCTCTGCTCACGCTGGCTTTGTGGGCCTACATTAGGTATGTTCTTATA---T--GGCTACG------------------------------------------------------------------------------------------------------------------------------------------TTAGACGATCA-----------CT----AAT---CATT---T---AATTTCCT----------CTTTAGATATAGTGGCGAACTGAGCGACTTTGGTGGCAAGTTGGATGACTTTGCCACSizeHit CountTotal NormTotal
No Reads
droEle1
AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACT----ATC---GATC---T---CATTTCCA----------TTTCAGATATAGCGGCGAGCTGAGCGATTTCGGTGGCAAGTTGGATGAGTTTGCCACSizeHit CountTotal NormTotal
No Reads
droRho1
CTGGTCATGGGAGTGGCGCTGCTTACATTGGCTCTGTGGGCCTACATCAGGTAGGTTATTTT----------------------------------------GA--------------GGGGAGCCATTACAT--------TTT-----------------TCTTAAAAATAGGGCAAGGTCTGGCCATTAGTTGTTAATCCGGTGG-------------------TTTCACATTGCT----ATT---TATC---T---CTTTTTTA----------TTATAGATACAGCGGCGAGCTGAGCGATTTTGGTGGCAAGTTGGATGATTTTGCCACSizeHit CountTotal NormTotal
No Reads
droBia1
CTGGTCATGGGTGTGGCACTGCTGACGCTGGCTCTGTGGGCCTACATCAGGTGGGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CTGGTCATGGGTGTGGCGCTGCTCACGCTGGCTCTGTGGGCCTACATAAGGTGGGTTTAGATA---G--G-----------------------------------GATTACATAGCGTGACGGGTTGCACTTCTATTGTTCCCCACTCAAAGCTATATTACCTTTTGAAAATTGGTA----------ACTGAAACTAAATGCAAATA-------------------CTC---------------------TA---C---CCTCTCTA----------TTTTAGATATAGCGGCGAGCTGAGTGACTTTGGCGGCAAGTTGGATGACTTTGCTACSizeHit CountTotal NormTotal
No Reads
droEug1
CTGATTATGGGTGTGGCGCTGCTAACGCTGGCTCTGTGGGCCTATATCAGGTAAGTTCTATT----------------------------------------GGAAAATACTCT--TTGAGAAATTGCAATTT--------TTC-----------------ACTGAGAAAAAAGTTAATTGTTTAGAATTAATTGATTATTTAAATA-------------------CCC---------------------T----A---TATCTTCA----------TTTCAGATATAGCGGTGAGCTTAGTGACTTTGGGGGCAAGTTGGATGACTTTGCAACSizeHit CountTotal NormTotal
No Reads
dm3
CTGGTTATGGGTGTGGCGCTTCTAACGCTGGCTCTGTGGGCCTACATTAGGTAGGTTGATTTAGCTT----------------------------------------------------------------------------------------------------------------------------------------------GAGCTTTTGATGATAATT------TTGCC----AAC---GATG---T---TTTATCAA----------TTCCAGATATAGCGGAGAGCTCAGCGACTTTGGCGGCAAGTTGGATGACTTTGCAACSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.........GGTGTGGCGCTTCTAACGCTG................................................................................................................................................................................................................................................................................................................2114.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
..................................................................................................................................................................................................................................................................................................GGAGAGCTCAGCGACTTTGGCGGC....................2413.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TTATGGGTGTGGCGCTTCTAACGCT.................................................................................................................................................................................................................................................................................................................2512.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000
.....................CTAACGCTGGCTCTGTGGGCCTACATT..............................................................................................................................................................................................................................................................................................2712.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................AGCGGAGAGCTCAGCGACTTTGGC.......................2412.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TTTGGCGGCAAGTTGGATGA.........2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.............................................................................................................................................................................................................................................................................................ATAGCGGAGAGCTCAGCGACT............................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TTTGGCGGCAAGTTGGATGACTTTGCAA.2812.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TATGGGTGTGGCGCTTCTAACGCTGGC..............................................................................................................................................................................................................................................................................................................2712.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................GGCAAGTTGGATGACTTTG....1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000001000
......................TAACGCTGGCTCTGTGGGC.....................................................................................................................................................................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................TT------TTGCC----AAC---GATG---T---TTTATCA....................................................................2212.002000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GTGTGGCGCTTCTAACGCTG................................................................................................................................................................................................................................................................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................GACTTTGGCGGCAAGTTG..............1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................GCTCAGCGACTTTGGCGGCAA..................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CTTCTAACGCTGGCTCTGTGGGCCT...................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AACGCTGGCTCTGTGGGC.....................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TGGTTATGGGTGTGGCGCT..........................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.................GCTTCTAACGCTGGCTCTGT.........................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................GACTTTGGCGGCAAGTTGG.............1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TAACGCTGGCTCTGTGGGCCT...................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................GATATAGCGGAGAGCTCAGCGACT............................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TGGCGCTTCTAACGCTGGCTCTGT.........................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...........................................................................................................................................................................................................................................................................................................AGCGACTTTGGCGGCAAGTTGGATGAC........2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TCTAACGCTGGCTCTGTGGGC.....................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...........................................................................................................................................................................................................................................GCC----AAC---GATG---T---TTTATCAA----------TTCCAG...................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................GCTCAGCGACTTTGGCGGCAAGTTG..............2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TTTGGCGGCAAGTTGGATGACTC......2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
........GGGTGTGGCGCTTCTAACGCTG................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GCTGGCTCTGTGGGCCTAC.................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................GATATAGCGGAGAGCTCAGCGAC.............................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................TCAGCGACTTTGGCGGCAAGTTGGATG..........2711.001000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................TCAGCGACTTTGGCGGCAAGTTGGATGAC........2911.001000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CTTCTAACGCTGGCTCTGTCT.......................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......ATGGGTGTGGCGCTTCTAAC....................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..............................................................................................................................................................................................................................................................................................TAGCGGAGAGCTCAGCGACTTTGGC.......................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TGGGTGTGGCGCTTCTAAC....................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CTGGTTATGGGTGTGGCG............................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
......................................................................................................................................................................................................................................................................................................AGCTCAGCGACTTTGGCGGC....................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................TTGGCGGCAAGTTGGATGACT.......2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
...............................................................................................................................................................................................................................................................................................................ACTTTGGCGGCAAGTTGG.............1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..................................................GTAGGTTGATTTAGCTT----------------------------------------------------------------------------------------------------------------------------------------------GAGC.........................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................GACTTTGGCGGCAAGTTGGATGACTT......2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GCGCTTCTAACGCTGGCT.............................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GGTTATGGGTGTGGCGCTT.........................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TCTAACGCTGGCTCTGTGGGCCT...................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TCTAACGCTGGCTCTGTGGG......................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................AGTTGGATGACTTTGCAA.1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....TATGGGTGTGGCGCTTCTAACGC..................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................GGAGAGCTCAGCGACTTTGGCGGCAATC................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................GATATAGCGGAGAGCTCAGC................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CTAACGCTGGCTCTGTGGGC.....................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TTATGGGTGTGGCGCTTCTAAC....................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TTTGGCGGCAAGTTGGATGACT.......2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.........................................................................................................................................................................................................................................................................................................TCAGCGACTTTGGCGGCAAGTTGGA............2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CGCTTCTAACGCTGGCTCTGTGGGCCT...................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTAGGTTGATTTAGCTT----------------------------------------------------------------------------------------------------------------------------------------------GAGCTTTTGG...................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.......................................................................................................................................................................................................................................................................................................GCTCAGCGACTTTGGCGGCAAGT................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................AGCGGAGAGCTCAGCGACT............................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.....TATGGGTGTGGCGCTTCTAACGCT.................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GGTTATGGGTGTGGCGCTTCT.......................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TTTGGCGGCAAGTTGGATGACTTTG....2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TGTGGCGCTTCTAACGCTGGCTCTGTGG.......................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................TGATTTAGCTT----------------------------------------------------------------------------------------------------------------------------------------------GAGCTAA......................................................................................................................18110.091000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
droSim2
TTGATCATGGGTGTGGCGCTTCTAACGCTGGCTCTGTGGGCTTACATTAGGTAGGTTGATGCAGCTT----------------------------------------------------------------------------------------------------------------------------------------------GAGCTTTTGATGATAATC------TTGCC----AAC---GATC---A---CTTTTCCA----------TTCCAGATATAGCGGAGAGCTCAGCGATTTTGGCGGCAAGTTGGATGACTTTGCAACSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
..............................................................................................................................................................................................................................................................................................................GATTTTGGCGGCAAGTTGGAT...........2112.00202000000000000000
..........................................................................................................................................................................................................................................................................................GATATAGCGGAGAGCTCAGCGATTTT..........................2612.00200000002000000000
......................................................................................................................................................................................................................................................................................................................CGGCAAGTTGGATGACTT......1811.00110000000000000000
........................................................................................................................................................................................................................................................................................................CTCAGCGATTTTGGCGGC....................1811.00101000000000000000
...............................................................................................................................................................................................................................................................................................AGCGGAGAGCTCAGCGATTTTGGCGGC....................2711.00101000000000000000
.................................................................................................................................................................................................................................................................................................................TTTGGCGGCAAGTTGGATGA.........2011.00100010000000000000
.......................AACGCTGGCTCTGTGGGC.....................................................................................................................................................................................................................................................................................................1811.00100100000000000000
..........................................................................................................................................................................................................................................................................................................CAGCGATTTTGGCGGCAAGTTG..............2211.00100000000000100000
......................TAACGCTGGCTCTGTGGGCG....................................................................................................................................................................................................................................................................................................2020.50100100000000000000
droSec2
TTGATCATGGGTGTGGCGCTTCTAACGCTGGCTCTGTGGGCCTACATTAGGTAGGTTGATGCAGCTT----------------------------------------------------------------------------------------------------------------------------------------------GAGCTTTTGATGATAATC------TTGCC----AAC---GATC---A---CTTTTCCA----------TTCCAGATATAGCGGAGAGCTCAGCGACTTTGGCGGCAAGTTGGATGACTTTGCAACSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
................CGCTTCTAACGCTGGCTCTGTGGGC.....................................................................................................................................................................................................................................................................................................2511.0011000
..................................................................................................................................................................................................................................................................................................................TTGGCGGCAAGTTGGATGACTT......2211.0010010
.....CATGGGTGTGGCGCTTCTAACGCT.................................................................................................................................................................................................................................................................................................................2411.0010010
...................................................................................................................................................................................................................................................................................................GAGAGCTCAGCGACTTTGGC.......................2011.0010010
..................................................................................................................................................................................................................................................................................................................TTGGCGGCAAGTTGGATGACTTTGCA..2611.0010001
...................TTCTAACGCTGGCTCTGTGGGCCT...................................................................................................................................................................................................................................................................................................2411.0010010
droYak3
CTGGTCATGGGTGTGGCGCTGCTCACGCTGGCTCTGTGGGCCTACATCAGGTAGGTTGATAA---CT----------------------------------------------------------------------------------------------------------------------------------------------GAGTTTTGGTTGAGAATC------TTGCC----AACTAA---CTTTA---CTTTTGAA----------TTGCAGATATAGCGGAGAGCTCAGTGACTTTGGCGGCAAGTTGGATGACTTTGCAACSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
...........................................................................................................................................................................................................................................................................................ATATAGCGGAGAGCTCAGTGACTTTGGC.......................2812.00200000020000
...........................................................................................................................................................................................................................................................................................ATATAGCGGAGAGCTCAGTG...............................2011.00100000010000
............GTGGCGCTGCTCACGCTGGCTCTGTGG.......................................................................................................................................................................................................................................................................................................2711.00101000000000
..........................................................................................................................................................................................................................................................................................GATATAGCGGAGAGCTCAGT................................2011.00100000010000
............................................................................................................................................................................................................................................................................................TATAGCGGAGAGCTCAGTGACTTT..........................2411.00101000000000
..................................................................................................................................................................................................................................................................................................GGAGAGCTCAGTGACTTTGGC.......................2111.00101000000000
..........................................................................................................................................................................................................................................................................................................CAGTGACTTTGGCGGCAAG.................1911.00100000010000
..........................................................................................................................................................................................................................................................................................GATATAGCGGAGAGCTCAGTGACTTTGGC.......................2911.00100000010000
...........................................................................................................................................................................................................................................................................................ATATAGCGGAGAGCTCAGT................................1911.00100000010000
.............................................................................................................................................................................................................................................................................................ATAGCGGAGAGCTCAGTGACTTT..........................2311.00100000010000
................................................................................................................................................................................................................................................................................................................CTTTGGCGGCAAGTTGGATGAC........2211.00110000000000
............................................................................................................................................................................................................................................................................................TATAGCGGAGAGCTCAGTGACTTTGGC.......................2711.00100000010000
...........................CTGGCTCTGTGGGCCTTA.................................................................................................................................................................................................................................................................................................1820.50100000100000
droEre2
CTGGTCATGGGTGTGGCGCTACTCACGCTGGCTCTGTGGGCTTACATCAGGTAGGTTGATAA---TT----------------------------------------------------------------------------------------------------------------------------------------------GAGCTCTGGATGATAATC------TTGCC----AACTAA---CTCTT---CTTTTGAA----------TTGCAGATATAGCGGAGAGCTCAGTGACTTTGGCGGCAAGTTGGATGACTTTGCTACSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
..........................................................................................................................................................................................................................................................................................GATATAGCGGAGAGCTCAGTGA..............................2212.0020000110
..........................................................................................................................................................................................................................................................................................................................AAGTTGGATGACTTTGCTA.1911.0011000000
.................GCTACTCACGCTGGCTCTGTGGGC.....................................................................................................................................................................................................................................................................................................2411.0010100000
..............GGCGCTACTCACGCTGGCT.............................................................................................................................................................................................................................................................................................................1911.0010100000
...............................................................................................................................................................................................................................................................................................AGCGGAGAGCTCAGTGACTTT..........................2111.0010000100
..............................................................................................................................................................................................................................................................................................................GACTTTGGCGGCAAGTTG..............1811.0010100000
..............................................................................................................................................................................................................................................................................................................GACTTTGGCGGCAAGTTGGAT...........2111.0011000000

Generated: 10/20/2015 at 07:14 PM