ID:

dvi_6778

 Coordinate:

scaffold_12875:13858209-13858359 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.1 -15.8 -15.7

Flybase annnotation

exon [dvir_GLEANR_5746:5]; CDS [Dvir\GJ20301-cds]; intron [Dvir\GJ20301-in]

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+
mature
  1. scaffold_12723:5175779-5175797 -
  2. scaffold_12726:837773-837791 -
  3. scaffold_12822:2053837-2053855 -
  4. scaffold_12822:2407941-2407959 -
  5. scaffold_12875:3515136-3515154 -
  6. scaffold_12875:10160123-10160141 -
  7. dvi_6778  scaffold_12875:13858265-13858283 -
  8. scaffold_12875:17002865-17002883 -
  9. scaffold_12963:358207-358225 -
  10. scaffold_12963:2500340-2500358 -
  11. scaffold_12963:8317612-8317630 -
  12. scaffold_12970:3778814-3778832 -
  13. scaffold_13042:1936483-1936501 -
  14. scaffold_13042:4496455-4496473 -
  15. scaffold_13049:8587249-8587267 -
  16. scaffold_13049:9912213-9912231 -
  17. scaffold_13049:11908756-11908774 -
  18. scaffold_13049:12323928-12323946 -
  19. scaffold_13049:20926937-20926955 -
  20. scaffold_13049:22732972-22732990 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GATAGCCGTCAAGCGTTTGGAGAAATACAAGAAGGCGCCACTGGAGAAAGGTAAGTTGCGAAGCAGCTCATAAACTTCTTTATATAGTTATACCTCGCACACAGCCGCTCCAACACACATCCACACACACACACACACACACTCGAAATTAAGCCCAAAAGCAGGGTATGTGCATACACTCAGAGAAAAACTCAAACTCAAATGCTGATGATAATTAAATTCGTGTTACAACTATTCTGAAAACTGAAACT
**************************************************((..((((.((.((.(((............((((....))))..........))).))))))))..)).................((((.((((...................)))).))))..........(((.....)))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060665
9_females_carcasses_total
 M061
embryo
 V053
head
 V116
male body		 M027
male body		 SRR060664
9_males_carcasses_total
 SRR060679
140x9_testes_total
 V047
embryo
.................TCGAGAAATACATGAAGGC....................................................................................................................................................................................................................... 19 2 3 0.33 1 1 0 0 0 0 0 0 0
...............TTTCGAGAAATACGTGAAGGC....................................................................................................................................................................................................................... 21 3 7 0.14 1 0 1 0 0 0 0 0 0
...................................................................TCACAAACTCCTTTATATAGC................................................................................................................................................................... 21 3 8 0.13 1 0 0 1 0 0 0 0 0
...............................AAGGCGCCACAAGAGAAA.......................................................................................................................................................................................................... 18 2 10 0.10 1 0 0 0 1 0 0 0 0
..............................TAAGGCGCCACTGGACTA........................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 1 0 0 0
..............................................................................................................................ACACACACACACACACTCG.......................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 1 0 0
..............................................................................................................................ACACACACACACACACTCGAACT...................................................................................................... 23 1 20 0.05 1 0 0 0 0 0 0 1 0
.........................................................................................................................................CACACTCGAAATTACTCGC............................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

CTATCGGCAGTTCGCAAACCTCTTTATGTTCTTCCGCGGTGACCTCTTTCCATTCAACGCTTCGTCGAGTATTTGAAGAAATATATCAATATGGAGCGTGTGTCGGCGAGGTTGTGTGTAGGTGTGTGTGTGTGTGTGTGTGAGCTTTAATTCGGGTTTTCGTCCCATACACGTATGTGAGTCTCTTTTTGAGTTTGAGTTTACGACTACTATTAATTTAAGCACAATGTTGATAAGACTTTTGACTTTGA
**************************************************((..((((.((.((.(((............((((....))))..........))).))))))))..)).................((((.((((...................)))).))))..........(((.....)))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V053
head
 GSM1528803
follicle cells		 SRR060669
160x9_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060675
140x9_ovaries_total
 V047
embryo
.................................................................................TGTATCAGTCTGGAGCGTGTG..................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................GTCGGCGAGGTTGTGCGTGGGC................................................................................................................................ 22 3 2 0.50 1 0 1 0 0 0 0 0
............................................................................................................................................TGAGCTTTAATCCGGGTGTT........................................................................................... 20 2 3 0.33 1 0 0 1 0 0 0 0
................AACCTCTTGAGGGTCTTCCG....................................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 1 0 0 0
............................................................................................................................................TGCGCTTTAATCCGGGTGTT........................................................................................... 20 3 9 0.11 1 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................GTAGATAAAACTTTTGAC..... 18 2 20 0.05 1 0 0 0 0 1 0 0
....................................................................GTATTTGAAGGAACAAATC.................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0
...........................................................................................TGGAGCGCGGGTCGGCGACG............................................................................................................................................ 20 3 20 0.05 1 0 0 0 0 0 0 1
.................................................................................................................GTGTGTAGGTGTGTGTGT........................................................................................................................ 18 0 20 0.05 1 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:13858159-13858409 - dvi_6778 GATAGCCGTCAAGCG-----TTTGG---AGAAATACAAGAAGGCGCCACTGGAGA--AAGGTAAGTTGCGA-----------------------------AGCAGC------TCATAAACTTCTT-----TATATAGTTA--------TAC-----CTCGCACACAGCC--------GCTCC-AA-------------------------------------------------------------------CAC----AC----ATCCACACACACAC--------ACACACACACTC---------------------------------------------------------------------G------AAA----TT----AAGCCC---------A----------------------------------------------------------------------AAAGCAGGGTATGTGCATACACTCAGAGAAA----------------------AACTCAAACTCAAATGCTGATGATAATTAAATTCGTGTTACAACTAT----------------------------------------------TCT-GAAAACTGAA-ACT
droMoj3 scaffold_6496:9355360-9355492 + AA----TTACA-----------------------------------------------------------A-----------------------------AGC-AA------TTAAAAACATATT-----TATATATTGTCTCTGCCATTAAAAAGCTCAC------------------------------------------GCT----------C----------AC--------ACACACACACACA--C----AGAAGCACACGCACAAGCA--------CACACACAC---------------------------------------------------------------A--C--ACGCATA------CAC----ACACGC----AT--AAAGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT--
droGri2 scaffold_14853:9689903-9690051 + TA----AGTAT------------------------------------------------------------------------------------------------------------------------------------------AC-------CA--------------------------------------------------------C--------------------ACACACACACACACACAT----AC----ACCCACAAACA--------CACACACAC---------------------------------------------------------------AA----------------------------------------------------------------------------------------------------CACTTAACCGTTGTTCAATGCAGGG-------------------------------------------------------------------TAATTCACATCGACACAAAAAAAAACC--TA-TTTAAATGGTCGCATCGTTAAAT-TTTGCGTATTAT--TCTA----------AA--
droWil2 scf2_1100000004511:75991-76125 - AC----ACCAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACACACACACA--CGC----AC----ACAC--------ACACACACACACTCAC--TC--------------------------------------------------------------------------------------------------------------------------------CAATATACTAGTTAGTAAAAGAAGAGATGGGGAAACTA-----------G-----------------------------------------------------------------------------------AGAGAAAAAAAAAAT--CACCTAACACT---------------AAGTTGTTGTTCTAATTTTTCT------------G--
dp5 4_group3:4569042-4569177 + TT----ATACA-----------------------------------------------------------------------------------------------------------------------------ATAT--------TAT-----CATGCTTATATAA--------TTTGC-TA-----------------TA------------C--------------------ACACACACACACA--CAC----AC----ACACAC----------------------------CAACACAAACAGGGGG---------------------------ACATGGAGACACAGAGAGACCC--CCA------CACAAG------------------------------------------------------------------------------------------------------------------------------CGAGCATACGATAAAGCTCGAG---------TAAC--------------------------------------------------------------------------------------------AA--
droPer2 scaffold_7:621513-621642 + AA----AGCTT------------------------------------------------------------CGATAAAAAAAA----GAATCGGCCAA--GCC-GA------CTGACAGCCATTT-----TAAATGGTAA--------TTT-----AGCGCGCAGACAG--------GCACC-AA-----------------CA------------C--------------------ACACACACA------------------------------CAC--------ACACATACATAGAAAAGTAAGGAC----CGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATG--------------------------------------------------------------------------------------------TG--
droAna3 scaffold_13334:917341-917480 + AC----GGCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTG--------------------TA----CGCCCTTGC--------------------ACACTCAC--------------------------------AC--------ACACACACACCC------AAA-A-----CG---------------------------------------------------G----------------------------------------------------GCGCGTGCACACCAAATTAAAAAAAAAAAAAAAAAAAAACTA-----------G--------------------------ACTAGTTGTGAATGTATTAGTGCTCCTA-----------------------------------------TTAC----------------------------------------------ACT-AAAAAAAAAA-A--
droBip1 scf7180000394524:524-653 + AC----A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--------------------ACACACACACAAA--CAC----AC----A---------------------------------------------------------------------------------------------C--ACACATG------TAA----ACACG----CTC--AAAGGT------------------CTTGTAAGAACGTTAAGTAAAAAA--AAAAAAACAAAAAACCA-----------A------------AA-------------------------------------------------------------TAATTAAAATCAAAAAACGAAAAAACA-----------------------------------------------TAAAACAGAA-A--
droKik1 scf7180000302461:1142148-1142273 - CC----CGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------ACACTC--------A------------------------------------------------------------------CT--CAAACAA----GC----ACACACACACACAC--------ACACACACAC---------------------------------------------------------------------TTA------CACAGG----------CCCAAAGGACACAGGACTCTGTCGGAGGACTTG---------------------------------------------------------------TGCGTC----------------------CGTTAACAGTCGCATTTGAATTTAAAT--------------------------------------------------------------------------------------------GC--
droFic1 scf7180000454106:1775915-1776015 - AT----AAACT------------------------------------------------------------AGTTATTAAATTTATAGAAACGTCACT------------------------------------------------------------------TACAC--------A--------------------------------------------------------------CCACAA------CACACTGAA--------ACTTACACAC--------ACACACACACTC---------------------------------------------------------GACA--------G------CGATGA----------CCCC--------A----------------------------------------------------------------------ACA--------------------------------------------------------------ACA--------------------------------------------------------------------------------------------AG--
droEle1 scf7180000490141:477296-477475 + AT----TGAAAAATGAT-----------AAT---GAGCGAAAA------------------------------------------------------------AGC--------------ATATT-----------------CTGCCATTC-----CACGCAAACACAC--------ACACC-AACACACG----C-ACACC--------------CACATTATCACACACACTCAC----------------------------TCGCGG----------------------------CATGACAAGGACA----AGA-----------------------TGATGAAGAAAAA----------------------G----AT----ATTCCC---------C----------------------------------------------------------------------AAAGCGTAAAAAGAACACACACACATTG------------------------------CAAAACACAA--------------------------------------------------------------------------------------------AC--
droRho1 scf7180000780007:240469-240608 - CA----CACGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACA------------------------------CAC--------ACATACACACACAGAGGCAAACAC----AGGATACTCGGTGGTGGGGATGCATCCACACACAGACACACAGGGACAC--TAA------CACTAGCACACAC--------------------------------------------------------------------------------------------------------------AGAAGCA----------------------------------AA-----------------------------------------TGCA---------------TGTTTGTTGTAATTAATTTAA------------AA--
droBia1 scf7180000302041:133428-133538 + AC----CACAT------------------------------------------------------------ACA--------------------------------------------------------------------------------------------CACACACACACACACA-CACACACACACACA-------CA--------------------CACACACACACACAC----------------------------AC----------------------------ACACACACACACACAC-----------------------------------------ACACACACACACACAC----AC---A-CACAC------------------------------------------------------------------------------------------------------------------------------------------------ACACACACAC--------------------------------------------------------------------------------------------AC--
droTak1 scf7180000415169:856766-856874 + GA----ATAAAAACAAC----------------------AACAAGAAACAGGAG----------------------------------------------AAA--A------ATAAAAAAAAATTTAGTG---TTATCATCTTG----------AACT------CGCGC--------A--------------------------------------------------------------CTCAAA------CAA----AC----ACACACAAACACAC--------ACACACACACTT---------------------------------------------------------------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000408844:484903-485030 + GC----CATCGAACG-----TGAGG---AAA---GCGCGGAGGAGCCTGTGGCTGCACATGTGTGCTTCGG-----------------------------GGCA-A------TCA--------TT-----TAAATAGTTA--------TTG-----CAC------TTTT--------TCCTC--------------------AA------------C--------------------TCCCACCCACACA--CAC----AC----A--------CACAC--------TCACACACAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr3L:15818784-15818963 - TA----CAAAA-GCAACGCCGTTGTAAAAAT---ACGTGACAA---------------------------------------------------------AAC-GC------TTACACACACAT-------------------------------------------------------ACT-CACATTCGTACACC-------CACACACAGTTGC--------------------GCTCTCTC--------------------------------AC--------ACACATACACAC---------------------------------------------------------AGTTGCGC----TCTCTCACAC--------ATAAA---------CACACAAGCGTATCGAAAGACTGG---------------------------------------------------------------TGCAGA----CAGAGAGA----------------------GACGCGAATG--TGA--------------------------------------------------------------------------------------------AT--
droSim2 x:7668339-7668447 + CG----CACAC----------------------------------------------------------------------------------------------------------------------------------------------------------ATGG--------ACACC-CGCTTACA----T-CCACA--------------CACAGACACACACACACACAC----------------------------GCGCAG----------------------------CAATACCAACACACGG---------------------------ACAG----------A--G--ACACGCACAG----GG---T-CACAC------------------------------------------------------------------------------------------------------------------------------------------------AAACACACAT--------------------------------------------------------------------------------------------GC--
droSec2 scaffold_8:1721836-1721961 - GA----AAAAATACG-----CAAGA---AGG---A-----------------CGA--AGGACGAAGGACGA-----------------------------AGCAGCCAGCAAGTGGAGACGGAAT-----TTGTTATCATCTTG----------AACTCGC------------------------------------------G------------C--------------------ACACGCACACACA--CAC----AC----GCACGCAGGCA--------CACACACAC--AC-----------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 3L:8044094-8044204 + CA----AACGC----------GCGA---AAA------------------------------------------------AAGCCACAAAGGCGGCGGTTGGGC--A------ACGGAAGAAGGTGCGGAT---GGTTTGCCTTG----------TCCT------GGCTT--------ATGGCTAA-----------------CA------------T--------------------ATACACACA------------------------------CAC--------ACACACACAT-----------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4845:18836835-18836942 + AA----CACAC------------------------------------------------------------------------------------------------------------------------------------------TC---------------------------------------------------GA------------C--------------------ACACACACACACA--CAC----AC-TAAACGCACCATCG--------CACCCACAC---------------------------------------------------------------A--C--ACGCATGTAG----TG---TACACAC--------------------------------------------------------------------------------------------------------------AGAGACAGTTGAAAATTTA-----------------------ATAATAATGAAAA---------------------------------------------------------------------------------TT--

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GATAGCCGTCAAGCG-----TTTGG---AGAAATACAAGAAGGCGCCACTGGAGA--AAGGTAAGTTGCGA-----------------------------AGCAGC------TCATAAACTTCTT-----TATATAGTTA--------TAC-----CTCGCACACAGCC--------GCTCC-AA-------------------------------------------------------------------CAC----AC----ATCCACACACACAC--------ACACACACACTC---------------------------------------------------------------------G------AAA----TT----AAGCCC---------A----------------------------------------------------------------------AAAGCAGGGTATGTGCATACACTCAGAGAAA----------------------AACTCAAACTCAAATGCTGATGATAATTAAATTCGTGTTACAACTAT----------------------------------------------TCT-GAAAACTGAA-ACTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................ACACAC--------ACACACACACTC---------------------------------------------------------------------G------.......................................................................................................................................................................................................................................................................19200.051000000000000001000000000000000000000000000000000000000000000000
droMoj3
AA----TTACA-----------------------------------------------------------A-----------------------------AGC-AA------TTAAAAACATATT-----TATATATTGTCTCTGCCATTAAAAAGCTCAC------------------------------------------GCT----------C----------AC--------ACACACACACACA--C----AGAAGCACACGCACAAGCA--------CACACACAC---------------------------------------------------------------A--C--ACGCATA------CAC----ACACGC----AT--AAAGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT--SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................GCA--------CACACACAC---------------------------------------------------------------A--C--ACGCATA------CA.....................................................................................................................................................................................................................................................................23200.051100000
droGri2
TA----AGTAT------------------------------------------------------------------------------------------------------------------------------------------AC-------CA--------------------------------------------------------C--------------------ACACACACACACACACAT----AC----ACCCACAAACA--------CACACACAC---------------------------------------------------------------AA----------------------------------------------------------------------------------------------------CACTTAACCGTTGTTCAATGCAGGG-------------------------------------------------------------------TAATTCACATCGACACAAAAAAAAACC--TA-TTTAAATGGTCGCATCGTTAAAT-TTTGCGTATTAT--TCTA----------AA--SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................................................................................................................................................................................................................................................................................CACACACAC---------------------------------------------------------------AA----------------------------------------------------------------------------------------------------CACTTAACCGT.........................................................................................................................................................................2211.00110
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCAATGCAGGG-------------------------------------------------------------------TAATTCACATCGA...........................................................................2711.00101
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCAGGG-------------------------------------------------------------------TAATTCAC................................................................................1811.00110
droWil2
AC----ACCAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACACACACACA--CGC----AC----ACAC--------ACACACACACACTCAC--TC--------------------------------------------------------------------------------------------------------------------------------CAATATACTAGTTAGTAAAAGAAGAGATGGGGAAACTA-----------G-----------------------------------------------------------------------------------AGAGAAAAAAAAAAT--CACCTAACACT---------------AAGTTGTTGTTCTAATTTTTCT------------G--SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGATGGGGAAACTC-----------C-----------------------------------------------------------------------------------................................................................................18120.08100100
dp5
TT----ATACA-----------------------------------------------------------------------------------------------------------------------------ATAT--------TAT-----CATGCTTATATAA--------TTTGC-TA-----------------TA------------C--------------------ACACACACACACA--CAC----AC----ACACAC----------------------------CAACACAAACAGGGGG---------------------------ACATGGAGACACAGAGAGACCC--CCA------CACAAG------------------------------------------------------------------------------------------------------------------------------CGAGCATACGATAAAGCTCGAG---------TAAC--------------------------------------------------------------------------------------------AA--SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................TA-----------------TA------------C--------------------ACACACACACACA--CA................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
.................................................................................................................................................................................................................................................ACACACACA--CAC----AC----ACACAC----------------------------C..................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
droPer2
AA----AGCTT------------------------------------------------------------CGATAAAAAAAA----GAATCGGCCAA--GCC-GA------CTGACAGCCATTT-----TAAATGGTAA--------TTT-----AGCGCGCAGACAG--------GCACC-AA-----------------CA------------C--------------------ACACACACA------------------------------CAC--------ACACATACATAGAAAAGTAAGGAC----CGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATG--------------------------------------------------------------------------------------------TG--SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
AC----GGCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTG--------------------TA----CGCCCTTGC--------------------ACACTCAC--------------------------------AC--------ACACACACACCC------AAA-A-----CG---------------------------------------------------G----------------------------------------------------GCGCGTGCACACCAAATTAAAAAAAAAAAAAAAAAAAAACTA-----------G--------------------------ACTAGTTGTGAATGTATTAGTGCTCCTA-----------------------------------------TTAC----------------------------------------------ACT-AAAAAAAAAA-A--SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................................................CCC------AAA-A-----CG---------------------------------------------------G----------------------------------------------------GCGCGTGCAC...............................................................................................................................................................................................................2011.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAACT................................................................................................................................................................................21200.204040000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAC.................................................................................................................................................................................20200.102020000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAACT................................................................................................................................................................................18200.051010000
droBip1
AC----A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--------------------ACACACACACAAA--CAC----AC----A---------------------------------------------------------------------------------------------C--ACACATG------TAA----ACACG----CTC--AAAGGT------------------CTTGTAAGAACGTTAAGTAAAAAA--AAAAAAACAAAAAACCA-----------A------------AA-------------------------------------------------------------TAATTAAAATCAAAAAACGAAAAAACA-----------------------------------------------TAAAACAGAA-A--SizeHit CountTotal NormTotal
No Reads
droKik1
CC----CGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------ACACTC--------A------------------------------------------------------------------CT--CAAACAA----GC----ACACACACACACAC--------ACACACACAC---------------------------------------------------------------------TTA------CACAGG----------CCCAAAGGACACAGGACTCTGTCGGAGGACTTG---------------------------------------------------------------TGCGTC----------------------CGTTAACAGTCGCATTTGAATTTAAAT--------------------------------------------------------------------------------------------GC--SizeHit CountTotal NormTotal
No Reads
droFic1
AT----AAACT------------------------------------------------------------AGTTATTAAATTTATAGAAACGTCACT------------------------------------------------------------------TACAC--------A--------------------------------------------------------------CCACAA------CACACTGAA--------ACTTACACAC--------ACACACACACTC---------------------------------------------------------GACA--------G------CGATGA----------CCCC--------A----------------------------------------------------------------------ACA--------------------------------------------------------------ACA--------------------------------------------------------------------------------------------AG--SizeHit CountTotal NormTotal
No Reads
droEle1
AT----TGAAAAATGAT-----------AAT---GAGCGAAAA------------------------------------------------------------AGC--------------ATATT-----------------CTGCCATTC-----CACGCAAACACAC--------ACACC-AACACACG----C-ACACC--------------CACATTATCACACACACTCAC----------------------------TCGCGG----------------------------CATGACAAGGACA----AGA-----------------------TGATGAAGAAAAA----------------------G----AT----ATTCCC---------C----------------------------------------------------------------------AAAGCGTAAAAAGAACACACACACATTG------------------------------CAAAACACAA--------------------------------------------------------------------------------------------AC--SizeHit CountTotal NormTotal
No Reads
droRho1
CA----CACGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACA------------------------------CAC--------ACATACACACACAGAGGCAAACAC----AGGATACTCGGTGGTGGGGATGCATCCACACACAGACACACAGGGACAC--TAA------CACTAGCACACAC--------------------------------------------------------------------------------------------------------------AGAAGCA----------------------------------AA-----------------------------------------TGCA---------------TGTTTGTTGTAATTAATTTAA------------AA--SizeHit CountTotal NormTotal
No Reads
droBia1
AC----CACAT------------------------------------------------------------ACA--------------------------------------------------------------------------------------------CACACACACACACACA-CACACACACACACA-------CA--------------------CACACACACACACAC----------------------------AC----------------------------ACACACACACACACAC-----------------------------------------ACACACACACACACAC----AC---A-CACAC------------------------------------------------------------------------------------------------------------------------------------------------ACACACACAC--------------------------------------------------------------------------------------------AC--SizeHit CountTotal NormTotal
No Reads
droTak1
GA----ATAAAAACAAC----------------------AACAAGAAACAGGAG----------------------------------------------AAA--A------ATAAAAAAAAATTTAGTG---TTATCATCTTG----------AACT------CGCGC--------A--------------------------------------------------------------CTCAAA------CAA----AC----ACACACAAACACAC--------ACACACACACTT---------------------------------------------------------------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
GC----CATCGAACG-----TGAGG---AAA---GCGCGGAGGAGCCTGTGGCTGCACATGTGTGCTTCGG-----------------------------GGCA-A------TCA--------TT-----TAAATAGTTA--------TTG-----CAC------TTTT--------TCCTC--------------------AA------------C--------------------TCCCACCCACACA--CAC----AC----A--------CACAC--------TCACACACAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TA----CAAAA-GCAACGCCGTTGTAAAAAT---ACGTGACAA---------------------------------------------------------AAC-GC------TTACACACACAT-------------------------------------------------------ACT-CACATTCGTACACC-------CACACACAGTTGC--------------------GCTCTCTC--------------------------------AC--------ACACATACACAC---------------------------------------------------------AGTTGCGC----TCTCTCACAC--------ATAAA---------CACACAAGCGTATCGAAAGACTGG---------------------------------------------------------------TGCAGA----CAGAGAGA----------------------GACGCGAATG--TGA--------------------------------------------------------------------------------------------AT--SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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.....................................................................................................................................................................................................................................................................................................................................................................GTTGCGC----TCTCTCACAC--------ATA.........................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................ATAAA---------CACACAAGCGTATCGAAAC...........................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......AAAA-GCAACGCCGTTGTAAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAGA----------------------GACGCGAATG--TGA--------------------------------------------------------------------------------------------A...2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TAAA---------CACACAAGCGTATCGAAAGAC.........................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................C--------ACACATACACAC---------------------------------------------------------AGTTGCGC----TCT...........................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.......................................................................................................................................................................................CACATTCGTACACC-------CACACACAGTTGC--------------------.................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................CGTACACC-------CACACACAGTTGC--------------------GCT..............................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................ACACC-------CACACACAGTTGC--------------------GCTCTCT..........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................ATACACAC---------------------------------------------------------AGTTGCGC----TCTC..........................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CAAAA-GCAACGCCGTTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................TCTCTC--------------------------------AC--------ACACATACACAC---------------------------------------------------------AGTTGCGC----..............................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACTGG---------------------------------------------------------------TGCAGA----CAGAG........................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................CACATTCGTACACC-------CACACA............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................C--------------------------------AC--------ACACATACACAC---------------------------------------------------------AGTTGCGC----TCTC..........................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CAAAA-GCAACGCCGTTGTAAAAAT---ACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.A----CAAAA-GCAACGCCGTTGTAAAAAT---ACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGG---------------------------------------------------------------TGCAGA----CAGAGAGA----------------------GA.............................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................AA---------CACACAAGCGTATCGAAAGACTGG---------------------------------------------------------------TG.....................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TAAA---------CACACAAGCGTATCGAAA............................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGA----CAGAGAGA----------------------GACGCGAAT......................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GG---------------------------------------------------------------TGCAGA----CAGAGAGA----------------------GACG...........................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA----CAGAGAGA----------------------GACGCGAA.......................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................GTACACC-------CACACACAGTTGC--------------------GCTCTCT..........................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................T-CACATTCGTACACC-------CACACACAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................ACACAC---------------------------------------------------------AGTTGCGC----TCTCTCACAC--------A...........................................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................CACACAGTTGC--------------------GCTCTCTC--------------------------------AC--------ACA............................................................................................................................................................................................................................................................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................CACAC---------------------------------------------------------AGTTGCGC----TCTCTCACAC--------............................................................................................................................................................................................................................................................2320.5010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................ACACAGTTGC--------------------GCTCTCTC--------------------------------AC--------AC.............................................................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................CACACAGTTGC--------------------GCTCTCTC--------------------------------AC--------AC.............................................................................................................................................................................................................................................................................................................................................................2320.5010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................CACAGTTGC--------------------GCTCTCTC--------------------------------AC--------ACA............................................................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................ACAGTTGC--------------------GCTCTCTC--------------------------------AC--------A..............................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...............................................................................................................................................................................................................ACACAGTTGC--------------------GCTCTCTC--------------------------------AC--------A..............................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................CAC---------------------------------------------------------AGTTGCGC----TCTCTCACAC--------A...........................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................GTTGCGC----TCTCTCACAC--------A...........................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................ACAC---------------------------------------------------------AGTTGCGC----TCTCTCACAC--------............................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................ACACAC---------------------------------------------------------AGTTGCGC----TCTCTCA.......................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................CACAC---------------------------------------------------------AGTTGCGC----TCTCTCACAC--------A...........................................................................................................................................................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................CAC---------------------------------------------------------AGTTGCGC----TCTCTCACAC--------............................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
......................................................................................................................................................................................................................................................................................................CACAC---------------------------------------------------------AGTTGCGC----TCTCTCACA.....................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................CACACAGTTGC--------------------GCTCTCTC--------------------------------.........................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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....................................................................................................................................................................................................................GTTGC--------------------GCTCTCTC--------------------------------AC--------ACA............................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................ACAC---------------------------------------------------------AGTTGCGC----TCTCTCACA.....................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................ACACACAGTTGC--------------------GCTCTCTC--------------------------------AC--------ACA............................................................................................................................................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................CACAC---------------------------------------------------------AGTTGCGC----TCTCTC........................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................CACACAGTTGC--------------------GCTCTCTC--------------------------------AC--------A..............................................................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CG----CACAC----------------------------------------------------------------------------------------------------------------------------------------------------------ATGG--------ACACC-CGCTTACA----T-CCACA--------------CACAGACACACACACACACAC----------------------------GCGCAG----------------------------CAATACCAACACACGG---------------------------ACAG----------A--G--ACACGCACAG----GG---T-CACAC------------------------------------------------------------------------------------------------------------------------------------------------AAACACACAT--------------------------------------------------------------------------------------------GC--SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................CACGG---------------------------ACAG----------A--G--ACACGCACAG----GG---.................................................................................................................................................................................................................................................................2312.00220000000000000000
droSec2
GA----AAAAATACG-----CAAGA---AGG---A-----------------CGA--AGGACGAAGGACGA-----------------------------AGCAGCCAGCAAGTGGAGACGGAAT-----TTGTTATCATCTTG----------AACTCGC------------------------------------------G------------C--------------------ACACGCACACACA--CAC----AC----GCACGCAGGCA--------CACACACAC--AC-----------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CA----AACGC----------GCGA---AAA------------------------------------------------AAGCCACAAAGGCGGCGGTTGGGC--A------ACGGAAGAAGGTGCGGAT---GGTTTGCCTTG----------TCCT------GGCTT--------ATGGCTAA-----------------CA------------T--------------------ATACACACA------------------------------CAC--------ACACACACAT-----------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................GCCACAAAGGCGGCGGTTGGGC--A------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
droEre2
AA----CACAC------------------------------------------------------------------------------------------------------------------------------------------TC---------------------------------------------------GA------------C--------------------ACACACACACACA--CAC----AC-TAAACGCACCATCG--------CACCCACAC---------------------------------------------------------------A--C--ACGCATGTAG----TG---TACACAC--------------------------------------------------------------------------------------------------------------AGAGACAGTTGAAAATTTA-----------------------ATAATAATGAAAA---------------------------------------------------------------------------------TT--SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/16/2015 at 10:21 PM