ID:

dvi_6696

 Coordinate:

scaffold_12875:13476199-13476349 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.4 -12.9 -12.7

Flybase annnotation

CDS [Dvir\GJ20339-cds]; exon [dvir_GLEANR_5783:5]; intron [Dvir\GJ20339-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GAACATTCAGGACTCCGGCTTCGATGACATGACTGAGAAGGTTTACAAAAGTAAATAACTCGTTTCGTCATTGAGTTAACGTTTAAGTTGAAAATTGAAACAAACTGAAAATTTGTTGTTTTTGGTTTCGAGCATTGGCCAAAACTTTAGACATATGTAGACCGTGTATTTGAGTAACGTTTTCTTAAATCTCTCTTTTTTTTCTCTTTGCCAACACACAATTCACTTCGTTTACGCTTCTTTCCTTTTCT
******************************************************.(((((((.........))))))).........((((((...((((((.((.........))))))))...)))))).*********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M061
embryo
 GSM1528803
follicle cells		 M047
female body
 V047
embryo
 SRR060663
160_0-2h_embryos_total
 SRR060676
9xArg_ovaries_total
 SRR060679
140x9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060656
9x160_ovaries_total
 SRR060658
140_ovaries_total
 SRR060677
Argx9_ovaries_total
 V116
male body		 SRR060686
Argx9_0-2h_embryos_total
 SRR060660
Argentina_ovaries_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060674
9x140_ovaries_total
 SRR060654
160x9_ovaries_total
 SRR060664
9_males_carcasses_total
 SRR060665
9_females_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060675
140x9_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060687
9_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060657
140_testes_total
 SRR060666
160_males_carcasses_total
 SRR060673
9_ovaries_total
 SRR060678
9x140_testes_total
 SRR060683
160_testes_total
 SRR060688
160_ovaries_total
 SRR1106713
embryo_0-2h
 SRR1106727
larvae
 SRR1106730
embryo_16-30h
 V053
head
..............................................................................................................................................................................................................................TCACTTCGTTTACGCTTCTTTCCTTT... 26 0 1 5.00 5 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................ATAACTCGTTTCGTCATTGAGT............................................................................................................................................................................... 22 0 1 4.00 4 3 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TCACTTCGTTTACGCTTCTTTCCTTTTC. 28 0 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................TTGTTGTTTTTGGTTTCGAG....................................................................................................................... 20 0 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TTTGTTGTTTTTGGTTTCGAG....................................................................................................................... 21 0 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TTAGACATATGTAGACCGTGT.................................................................................... 21 0 1 3.00 3 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGAAAATTGAAACAAACTGAAAATT.......................................................................................................................................... 25 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TCTTAAATCTCTCTTTTTTTTCTCTTC.......................................... 27 1 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................GTTAACGTTTAAGTTGAAAATTGAAAC...................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATTTGTTGTTTTTGGTTTCGAGC...................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................GTGTATTTGAGTAACGTTTTCT.................................................................. 22 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................TTCGAGCATTGGCCAAAACTTTAGAC................................................................................................... 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AATTCACTTCGTTTACGCTTCT.......... 22 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TAGCTCGTTTCGTCATTGAGT............................................................................................................................................................................... 21 1 1 2.00 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTGAGTTAACGTTTAAGTTGAAA.............................................................................................................................................................. 23 0 1 2.00 2 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TCTTTGCCAACACACAATTCACTTCGTT................... 28 0 1 2.00 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................ACTTTAGACATATGTAGACCGTGT.................................................................................... 24 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTCACTTCGTTTACGCTTCTTTCCTTT... 27 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................TTTAGACATATGTAGACCGTG..................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................CTTTGCCAACACACAATTCACTTCG..................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................AAACTTTAGACATATGTAGACCGTGTATT................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................GACCGTGTATTTGAGTAACGTT...................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................ACAAAAGTAAATAGCTCGTTTCGTCATT................................................................................................................................................................................... 28 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................GACATATGTAGACCGTGT.................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................TGACATGACTGAGAAGGT................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TGCCAACACACAATTCACTTCGTTC.................. 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................CGTTTCGTCATTGAGTTA............................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................ATTTGTTGTTTTTGGTTTCGAGC...................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................GACATGACTGAGAAGGTTTACAAAAGT....................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................CTCTCTTTTTTTTGTCTTTGCCAAC.................................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................TCGATGACATGACTGAGAAGGTT................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TTTGGTTTCTAGCATTGGCC............................................................................................................... 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................TTGAAACAAACTGAAAATTTGT....................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................CTCTCTTTTTTTTCTCTTTGCCAAC.................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................GTTGTTTTTGGTTTCGAGC...................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....TTCAGGACTCCGGCTTCGATG................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................AACTTTAGACATATGTAGACGGT...................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................AGAACTCGTTTCGTCATTGA................................................................................................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTTTGGTTTCGAGCATTGG................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................GTTTCGAGCATTGGCCAAA............................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................TGTAGACCGTGTATTTGAGTAACGTT...................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TAAATAGCTCGTTTCGTCATTGAGT............................................................................................................................................................................... 25 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................TGTTGTTTTTGGTTTCGAGC...................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................ATTTGAGTAACGTTTTCTTAAATCTCTCT....................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................GTTTACGCTTCTTTCCTTTT.. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CAACACACAATTCACTTCGTT................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................ATATGTAGACCGTGTATTTGA.............................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CAAAACTTTATACATATGTAGACCGTG..................................................................................... 27 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................ATAACTCGTTTCGTCATTGAG................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................GCTTCGTCATTGAGTTAACGTTT....................................................................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TGTTTTTGGTTTCGAGCATTGGCCAA............................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TCTTTGCCAACACACAATTCACTTCGTC................... 28 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAATGGCTCGTTTCGTCAT.................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................CGATGACATGACTGAGAAGGT................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................AGAAGGTTTACAAAAGTA...................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TTTCGAGCATTGGCCAAAACT......................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TTGGTTTCGAGCATTGGCCAAAACTT........................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................AAATAACTCGTTTCGTCATTGAGT............................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TTCTCTTTGCCAACACACAATTCACT........................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................TTGCCAACACACAATTCACTTCGTTT.................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................TTCGATGACATGACTGAGAATGT................................................................................................................................................................................................................. 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CAATTCACTTCGTTTACGCTTCTT......... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................CAAAAGTAAATAGCTCGTTTCGTCATT................................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................GTAGACCGTGTATTTGAGTA........................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TGTTTTTGGTTTCGAGCATTGGC................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....TTCAGGACTCCGGCTTCGATGACATGACTGAGAAGG.................................................................................................................................................................................................................. 36 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.....TTCAGGACTCCGGCTTCGATGACA.............................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................TCGATGACATGACTGAGAAGGT................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GAACATTCAGGACTCCGG......................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................TTGTTGTTTTTGGGTTCGAG....................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................AGTTGAAAATTGAAACAAACTGAAAATT.......................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CTTCGTTTACGCTTCTTTC....... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....ATTCAGGACTCCGGCTTCGATGAC............................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................TTCGAGCATTGGCCAAAACC......................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TAGACCGTGTATTTGAGTAACGTT...................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................ATCTGTTGTTTTTGGTTTCGAGC...................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TTTGCCAACACACAATTCACTTCGTTT.................. 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TGTTTTTGGTTTCGAGCATTGGCC............................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................GAGGTAACGTTTAAGTTGAAAATTGAAAC...................................................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................CTCGTTTCGTCATTGAGTTAA............................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................AAACTTTAGACATATGTAGACCGT...................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AATTCACTTCGTTTACGCTTC........... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CTCTTTGCCAACACACAATTCACTTCGT.................... 28 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................ATAGCTCGTTTCGTCATTGAGT............................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................ATGACATGACTGAGAAGGTT................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TTTTTTTCTCTTTGCCAAC.................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................ATGACATGACTGAGAAGGTTTACAAAA......................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GTTTTTGGTTTCGAGCATTG.................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................GAGTTAACGTTTAAGTTGAAAATTGAAAC...................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................TCGATGACATGACTGAGAAGT.................................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................CAAAAGTAAATAGCTCGTTTCGT....................................................................................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................ATCTCTCTTTTTTTTCTCTTTGCCAAC.................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................AAACTTTAGACATATGTAGACCGTGT.................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............CTCCGGCTTCGATGACAT............................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TCACTTCGTTTACGCTTCTT......... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................TTGGCCAAAACTTTAGACATATGT............................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TTGGTTTCGAGCATTGGCC............................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................AAATAGCTCGTTTCGTCATT................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................GGCTTCGATGACATGACTGAGAAGGT................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TTTGGTTTCGAGCATTGGC................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GAACATTCAGGACTCCGGCTTCGAT.................................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TCTTTTTTTTCTCGTTGCCAAC.................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TGAGTTAACGTTTAAGTT.................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AACACACAATTCACTTCGT.................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................ATAGCTCGTTTCGTCATTGAGTTAACGT......................................................................................................................................................................... 28 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................ACATGACTGAGAAGGTTTAC............................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................AACTCGTTTCGTCATTGAGT............................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................ATTTGTTGTTTTTGGTTTCGAGCATTGGC................................................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......CAGGACTCCGGCTTCGATGACATGACTGAGAAGGT................................................................................................................................................................................................................. 35 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....TTCAGGACTCCGGCTTCGATGA................................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TGTTTTTGGTTTCGAGCATTG.................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................GCATTGGCCAAAACTTTAGAC................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CACTTCGTTTACGCTTCTTTCCTTT... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GTTTTTGGTTTCGAGCATTGGCCAAA............................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................GCTCGTTTCGTCATTGAGTTAACG.......................................................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TAAATCTCTCTTTTTTTTTTCTCT.......................................... 24 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AAACTGAAAATTTGTTGTTTTTT............................................................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ACGCTCAATTCACTTCGTTCAC................ 22 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATTTGTTGTTTTTGGTT............................................................................................................................ 18 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................CCGTGTAAGTTGAAAATT........................................................................................................................................................... 18 2 9 0.22 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
.............................................................................CCCGTGTAAGTTGAAAATT........................................................................................................................................................... 19 3 20 0.15 3 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................TTATTGTGTTTGGTTTCGATC...................................................................................................................... 21 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...............................................................................CGTGTAAGTTGAAAATTGCT........................................................................................................................................................ 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................GTGTAAGTTGAAAATTGC......................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CTTGTAAGTCCTGAGGCCGAAGCTACTGTACTGACTCTTCCAAATGTTTTCATTTATTGAGCAAAGCAGTAACTCAATTGCAAATTCAACTTTTAACTTTGTTTGACTTTTAAACAACAAAAACCAAAGCTCGTAACCGGTTTTGAAATCTGTATACATCTGGCACATAAACTCATTGCAAAAGAATTTAGAGAGAAAAAAAAGAGAAACGGTTGTGTGTTAAGTGAAGCAAATGCGAAGAAAGGAAAAGA
***********************************************************************************************************************.(((((((.........))))))).........((((((...((((((.((.........))))))))...)))))).****************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060677
Argx9_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060679
140x9_testes_total
 SRR060680
 9xArg_testes_total
 V116
male body		 M027
male body		 SRR060655
9x160_testes_total
 SRR060656
9x160_ovaries_total
 SRR060658
140_ovaries_total
 SRR060688
160_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 SRR060675
140x9_ovaries_total
 SRR060667
160_females_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060670
9_testes_total
..........................................................................................................................................................................................................AGAGAAACGGTTGTGTGTTAA............................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................GAAGCTACTGTACTGACTCTT.................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................TGTTTGACTTTTAAACAACAA................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TTGTGTGTTAAGTGAAGCAAA.................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................GAGCGAAGCAGTAACTCAGTT............................................................................................................................................................................ 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AAGTGAAGCAAATGCGAAGAA......... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TAACCGGTTTTGAAATCTGTA................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TGTGTGTTAAGTGAAGCAAAT................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................CGAGCAAAGCAGTAACTCAAT............................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................ACGGTTGTGTGTTAAGTGGA....................... 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TTAGAGAGAAAAAAAAGAGAA........................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................ACTGTACTGACTCTTCCAAAT.............................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............GCCGAAGCTACTGTACTGACT....................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................CGAGCAAAGCAGTAACTCAATT............................................................................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........CTGAGGCCGAAGCTACTGTAC............................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................AACTTAGAGAGAGAAAAAAGA.............................................. 21 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................AGAATTTAGAGAGAAAAACAAA............................................... 22 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........CCTGAGGCTGAAGGTACCG............................................................................................................................................................................................................................... 19 3 17 0.18 3 0 0 0 0 2 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................................................TTGTTAAGTGAAGCAAAAGCTA............. 22 3 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................ACTTCGACACAACAAAAACCAA............................................................................................................................ 22 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................AACTTTGTCTGAATTTTAAA......................................................................................................................................... 20 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................AGAGAAAAATAGGACAAACGG....................................... 21 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................ACTTTGTCTGAATTTTAAA......................................................................................................................................... 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:13476149-13476399 - dvi_6696 GAACATTCAGGACTCCGGCTTCGATGACATGACTGAGAAGGTTTACAAAAGTAAATAACT--CGTTTCGTCATT---------------------------------------------GAGTTAACGT-TTAAGTTGAAAA--TTGA-----------AACAAAC---TGAAAATT---TGTTGT--TTTTGGTTTC-GAG-----C------ATTGGCCAAAAC---------------TTTAGACAT------------ATGTAGACCGT-GTAT--TTGA-GTAA---------CGTTTTCT-----------TAAA----TC------------TCTCTT-TTT-TTTCT---CTTTGCCAACACACA------------ATTCAC------TTCGTTTACGCTTCTTTCCTTT-----TCT
droMoj3 scaffold_6496:6913201-6913486 - dmo_1015 GAACATTCAGGACTCTGGTTTCGATGATATGACTGAGAAGGTTTACAAAAGTAAATAACTC--GTTTCGTCATTGAGTTAA-------------------------------------------CACAT-TTAAGTTACAAA--C-AAACACATGGAA-A--AAACTACA-AAAATTTGATT-GGT--TTTTGGTTTC-GAG-----C------ATTGGCCA-AAAACAAT----------TTTAGACATTTATCTACATATATATAGAGCGT-GTA----TAA-CTAATTTCTTAAA------------TCGTTTCACCTTATATCTCTCTATATATTTCT--C-TTT-TTTCT---CTTTGCC------AAA-----------TTCGTT------TCTGTT--TTTCTTTC-------CA-----
droGri2 scaffold_15245:17757285-17757551 + GAACATTCAGGACTCGAGCTTCGATGACATGACTGAGAAGGTTTACAAAAGTAAATAACT--CGTTCCGTCATT---------------------------------------------GAGTTTACAT-TTAAGTTGAAAA--AAGAAAACAA-GAA-A--AAAC---A----AA----ATATGT--TTTTGGTTTC-GAG-----C------ATTGGCCAAAAA---------------CTTAGACAT--------------ATAGACCGT-GTAA--TTGAAATAACATTTTAAACGTTT--C-----------ATCTTATATC------------TCTCT---T--TTTCT---CTTTGCCAAC---CAATTTTCTATCCATTTCGT------TCTGTTCAACTTTCTG--CTCT-----TTT
droWil2 scf2_1100000004909:6701892-6702188 - GAACATTCAGGACCTTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAAGTCTCGTTTTG--ATTTACCTAACAAAATAATGAAACCAACAACCAAAAGAAAATAATAAAGAGTTTTCTT-TTAAGTTGAGAG-------------------------------CAT----A-------TTTTGTTTCC-ATT-----TGT---AATTGGCCCGAAAACAAGCAAACAAACACTTATTC-----------------TAGATCTT-AGAATTTTGC-ATAATTTCCAAACAA----AAAAAACCTTTTCATCTTTAATA------------TCT-----C--T-------TTCTGCA----T-ACA-----------TTTCGT------TCTATTTTCTATTCTCTCCGCT-----TCT
dp5 3:2503739-2503970 + dps_970 GAACATTCAGGACTCTGCCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAACG--------------------------------GT----TTCTGA--TTTTGGTTCC-AAT-----CA------CTGGCCA-ATA---------------CATAGA------------------TAGCCTTA-ATAT--TTGA-GTAATTTCTAACACGTTCTTC-----------GTAC----TC------------TCT-----C------T---TTTTGCTACA-T-CAA-----------TTTCGT------TTTGTTTACGTTTCTC--CAAT-----CCT
droPer2 scaffold_2:2692893-2693124 + dpe_1038 GAACATTCAGGACTCTGCCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAACG--------------------------------GT----TTCTGA--TTTTGGTTCC-AAT-----CA------CTGGCCA-ATA---------------CATAGA------------------TAGCCTTA-ATAT--TTGA-GTAATTTCAAACACGTTCTTC-----------GTAC----TC------------TCT-----C------T---TTTTGCTACA-T-CAA-----------TTTCGT------TTTGTTTACGTTTCTC--CAAT-----CCT
droAna3 scaffold_13266:17646269-17646529 - dan_2082 GAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAAACAA--A-----------AA------------AAC-CCATTGTGC--TTTTGGTTCG-ATT-----CACCAAAATTGGCCA-AAA---------------CTTAGACA----------------TAGCCTTTAATAA--TTGA-GTAACTTCTAACGCGTTTTCC-----------TTCAACCATC------------TCTCTCA-C--TCTCT---TTTTGCAACC---GTA-----------TTTGGT------TTTGTTAACGTTTTTC--TA-TTCC-----
droBip1 scf7180000396735:914499-914755 - GAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTCAC-------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAAA--A--A-----------AA------------CAC-CCATTGTGC--TTTTGGTTCG-ATT---CCCAC----ATTGGCCA-AAA---------------CTTAGACA----------------TAGCCTTTAATAA--TTGA-GTAATTTCTAACGCGTTTTCC-----------TTCAACCATC------------TCTCTCA-C--TCTCT---TTTTGCTACC---GTA-----------TTTGGT------TTTGTTAACGTTTCTC--TA-TTCC-----
droKik1 scf7180000302682:422992-423281 + GAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCTTTTTG--ATCCACCAAAA-------------------------ACAAA--CAAAAGAGTTTACTTTTTAAGTTGAAAA--ACAAACA--A---AAAACACAC---AAAACAC----TTGTGC--TTTTGGTTCC-AAAACAT-TTA----ATTGGCCCAAAA-C-------------CTTAGACCT---------------TAGACTTA-ATAA--CTGA-GTTACTTCTAACGCGTTCTCC-----------GTACTC--TC------------CCT-----C--TCTCT---TTTTGCTACC---AAATTC--------TTTGGTGGATTCTCTGTTAACGTTTCTC-------CATATAT
droFic1 scf7180000453811:249985-250228 - GAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAAA-------------------------------CAC----TTGTGCACTTTTGGTTCC-AAC-----CAT----ATTGGCCA-AAA---------------CTTAGACA----------------TAGCCTTT-ATAA--TTGA-GTAACTTCTAACGCGTTCTCC-----------GTTAACCATC------------TCT-----C--TTCCTACATTTTGCTATA---AAA-----------TTTCGT------TCTGTTAACGTTTCTC-------CC-----
droEle1 scf7180000491228:254901-255144 - GAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAACA--C---------------------------ACAC----TTGTGC--TTTTGGTTTC-AAT-----CAC----ATTGGCCCAAAA---------------CTTAGACGT--------------TTAGCCCTT-ACAA--TTGA-GTAA-TTCTAACGCGTTCTCC-----------GTACCTCATC------------TCT-----C--TTCCA--TTTTTGCTACC---AAA-----------TTTCGT------TCTGTTAACGTTTCTC-------CC-----
droRho1 scf7180000766409:44658-44898 - GAACATCCAGGACTCTGGCTTTGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAAA-------------------------------CAC----TTGTGC--TTTTGGTTTC-AAT-----CAC----ATTGGCCCAAAA---------------CTTAGACA----------------TAGCCTTT-ATAA--TTGA-GTAACTTCTAACGCGTTCTCC-----------GTAACTCATC------------TCT-----C--TTCCA--TTTTTGCTACC---AAA-----------TTTCGT------TCTGTTAACGTTTCTC-------CC-----
droBia1 scf7180000302292:1678171-1678411 - CAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--AATAAC-------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAAA-------------------------------CAC----TTGTGC--TTTTGGTTTC-CAA-----CAC----ATTGGCCA-AAA---------------CTTAGACA----------------TAGCCTTT-ATAA--CTGA-GTAACTTCTAACGCGTTCTCC-----------GTACCCCATC------------TCT-----CTCTTCTA---CTTTGCTACC---AAA-----------TTTCGT------TCTGTTAACGTTTCTC-------CC-----
droTak1 scf7180000415991:143148-143388 + CAACATCCAGGACTCTGACTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--AATAAC-------------------------------------CGAAAGAGTTTACTT-TTAAGTTAAAAA-------------------------------CAC----TTGTGC--TTTTGGTTCACAAT-----CAC----ATTGGCCA-AAA---------------CTTAGACA----------------TAGCCTTT-ATAA--TTGA-GTAACTTCTAACGCGTTCTCC-----------GTACCCCATC------------TCT-----CTC-TCCT---TTTTGCTACC---AAA-----------TTTCGT------TCTGTTAACGTTTCTC-------CC-----
droEug1 scf7180000409663:638518-638756 - GAACATCCAGGACTCTGGCTTTGATGACATGACTGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAAA-------------------------------CAC----TTGTGC--TTTTGGTTTC-AAC-----CAC----ATTGGCCA-AAA---------------CTTAGACA----------------TAGCCTTT-ATAA--CTGA-GTAATTTCTAACGCGTTCTCC-----------GTACTCCATC------------TCT-----C--TTCCC---TTTTGCTATG---AAA-----------TTTCGT------TCTGTTAATGTTTCTC-------CT-----
dm3 chr2R:14708739-14708979 + TAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAAA-------------------------------CAC----TTGTAC--TTTTGGTTTC-AAT-----CAC----ATTGGCCA-AAA---------------CTTAGACA----------------TAGCCTTC-ATAA--TTGA-GTAATTTCTAACGCGTTTTCC-----------GTACTCCATC------------TCT-----C--TTCCT---ATTTGCCGCA-CAAAA-----------TTTCGT------TCTGTTAACGTTTCAC-------CC-----
droSim2 2r:15357062-15357302 + dsi_20946 CAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAAA-------------------------------CAC----TTGTGC--TTTTGGTTTC-AAT-----CAC----ATTGGCCA-AAA---------------CTTAGACA----------------TAGCCTTC-ATAA--TTGA-GTAATTTCTAACGCGTTTTCC-----------GTACTCCATC------------TCT-----C--TTCCT---ATTTGCCGCA-CAAAA-----------TTTCGT------TCTGTTAACGTTTCTC-------CC-----
droSec2 scaffold_1:12216871-12217111 + dse_731 CAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAAA-------------------------------CAC----TTGTGC--TTTTGGTTTC-AAT-----CAC----ATTGGCCA-AAA---------------CTTAGACA----------------TAGCCTTC-ATAA--TTGA-GTAATTTCTAACGCGTTTTCC-----------GTACTCCATC------------TCT-----C--TTCCT---ATATGCCGCA-AAAAA-----------TTTCGT------TCTGTTAACGTTTCTC-------CC-----
droYak3 2R:14487223-14487462 - dya_572 CAACATCCAGGACTCTGGCTTCGATGACATGACTGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAAA-------------------------------CAC----TTGTGC--TTTTGGTTTC-AAT-----CAC----ATTGGCCA-AAA---------------CTTAGACA----------------TAGCCTTT-ATAA--TTGA-GTAATTTCTAACGCGTTTTCC-----------GTACTCCATC------------TCT-----C--TTCCT---ATTTGCCACC--AAAA-----------TTTCGT------TCTGTTAACGTTTCTC-------CC-----
droEre2 scaffold_4845:8900602-8900843 + der_1080 CAACATCCAGGACTCTGGCTTCGATGACATGACTGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAAA-------------------------------CAC----TTGTGC--TTTTGGTTTC-AAT-----CAC----ATTGGCCA-AAA---------------CTTAGACA----------------TAGCCTTT-ATAA--TTGA-GTAATTTCTAACGCGTTTTCC-----------GTACTCCATC------------TCT-----CTCTTCCT---ATTTGCCAAC--AAAA-----------TTTCGT------TCTGTTAACGTTTCTC-------CC-----

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GAACATTCAGGACTCCGGCTTCGATGACATGACTGAGAAGGTTTACAAAAGTAAATAACT--CGTTTCGTCATT---------------------------------------------GAGTTAACGT-TTAAGTTGAAAA--TTGA-----------AACAAAC---TGAAAATT---TGTTGT--TTTTGGTTTC-GAG-----C------ATTGGCCAAAAC---------------TTTAGACAT------------ATGTAGACCGT-GTAT--TTGA-GTAA---------CGTTTTCT-----------TAAA----TC------------TCTCTT-TTT-TTTCT---CTTTGCCAACACACA------------ATTCAC------TTCGTTTACGCTTCTTTCCTTT-----TCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................TCAC------TTCGTTTACGCTTCTTTCCTTT-----...2615.005000010000000000000000000100100000000000000000000000000000000002
......................................................ATAACT--CGTTTCGTCATT---------------------------------------------GAGT................................................................................................................................................................................................................................................................................................................2214.004001300000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TCAC------TTCGTTTACGCTTCTTTCCTTT-----TC.2814.004000000000000000000000000000000000000000000000000000000000000004
................................................................................................................................................................................T---TGTTGT--TTTTGGTTTC-GAG-----............................................................................................................................................................................................................................2014.004000000000000000000000000000000000000000000000000000000000000004
...............................................................................................................................................................................TT---TGTTGT--TTTTGGTTTC-GAG-----............................................................................................................................................................................................................................2114.004000000000000000000000000000000000000000000000000000000000000004
..................................................................................................................................................................................................................................................TTAGACAT------------ATGTAGACCGT-GT.......................................................................................................................................................2113.003000000102000000000000000000000000000000000000000000000000000000
........................................................................................................................................TGAAAA--TTGA-----------AACAAAC---TGAAAATT---.......................................................................................................................................................................................................................................................2513.003000300000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................TCT-----------TAAA----TC------------TCTCTT-TTT-TTTCT---CTTC.................................................................2713.003000000000000000000000000000000000000000000000000000000000000003
.........................................................................................................................GTTAACGT-TTAAGTTGAAAA--TTGA-----------AAC.........................................................................................................................................................................................................................................................................2712.002000200000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................AATT---TGTTGT--TTTTGGTTTC-GAG-----C------.....................................................................................................................................................................................................................2412.002000200000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................GT-GTAT--TTGA-GTAA---------CGTTTTCT-----------..............................................................................................................2212.002000000000000000000000000000002000000000000000000000000000000000
...................................................................................................................................................................................................TTC-GAG-----C------ATTGGCCAAAAC---------------TTTAGAC...................................................................................................................................................................................2612.002002000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................A------------ATTCAC------TTCGTTTACGCTTCT...............2212.002000000000020000000000000000000000000000000000000000000000000000
........................................................................TT---------------------------------------------GAGTTAACGT-TTAAGTTGAAA..............................................................................................................................................................................................................................................................................................2312.002000000001000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................................................................................................................T---CTTTGCCAACACACA------------ATTCAC------TTCGTT........................2812.002000000000000000000000000001000000000000000000000000000000000001
................................................................................................................................................................................................................................AC---------------TTTAGACAT------------ATGTAGACCGT-GT.......................................................................................................................................................2412.002000000000000000001000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................................................................................................................................................TTCAC------TTCGTTTACGCTTCTTTCCTTT-----...2712.002000000000000000000000000002000000000000000000000000000000000000
.................................................................................................................................................................................................................................................TTTAGACAT------------ATGTAGACCGT-G........................................................................................................................................................2111.001000000001000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................CTTTGCCAACACACA------------ATTCAC------TTCG..........................2511.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................AAAC---------------TTTAGACAT------------ATGTAGACCGT-GTAT--T..................................................................................................................................................2911.001000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................GACCGT-GTAT--TTGA-GTAA---------CGTT.............................................................................................................................2211.001000000000000000000000010000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................GACAT------------ATGTAGACCGT-GT.......................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000001000
........................TGACATGACTGAGAAGGT.................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................TGCCAACACACA------------ATTCAC------TTCGTTC.......................2511.001001000000000000000000000000000000000000000000000000000000000000
..............................................................CGTTTCGTCATT---------------------------------------------GAGTTA..............................................................................................................................................................................................................................................................................................................1811.001000000000000000000000001000000000000000000000000000000000000000
..............................................................................................................................................................................ATT---TGTTGT--TTTTGGTTTC-GAG-----C------.....................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.........................GACATGACTGAGAAGGTTTACAAAAGT.......................................................................................................................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
....................TCGATGACATGACTGAGAAGGTT................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000010000000000000000000000000000000
................................................................................................................................................TTGA-----------AACAAAC---TGAAAATT---TGT....................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................C------------TCTCTT-TTT-TTTCT---CTTTGCCAAC...........................................................2511.001000000000000000000000000000000000000000000000000000000000000001
.....................................................................................................................................................................................GTTGT--TTTTGGTTTC-GAG-----C------.....................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
.....TTCAGGACTCCGGCTTCGATG.................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................TTTTGGTTTC-GAG-----C------ATTGG................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................GTTTC-GAG-----C------ATTGGCCAAA...........................................................................................................................................................................................................1911.001000000000000000010000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TGTAGACCGT-GTAT--TTGA-GTAA---------CGTT.............................................................................................................................2611.001000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................TGTTGT--TTTTGGTTTC-GAG-----C------.....................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................AT--TTGA-GTAA---------CGTTTTCT-----------TAAA----TC------------TCTCT...................................................................................2911.001000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACGCTTCTTTCCTTT-----T..2011.001000000000000000000000000000000000000000000000000000000000000001
............................................................................................................................................................................................................................................................................................................................................................................CAACACACA------------ATTCAC------TTCGTT........................2111.001000000000000000100000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................AT------------ATGTAGACCGT-GTAT--TTGA-..............................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
......................................................ATAACT--CGTTTCGTCATT---------------------------------------------GAG.................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................TGT--TTTTGGTTTC-GAG-----C------ATTGGCCAA............................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................T---CTTTGCCAACACACA------------ATTCAC------TTCGTC........................2811.001000000000000000000000000000100000000000000000000000000000000000
.....................CGATGACATGACTGAGAAGGT.................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000010000000000000000000000000000000000000000000000000
...................................AGAAGGTTTACAAAAGTA......................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000010000000000000000000000000
..................................................................................................................................................................................................TTTC-GAG-----C------ATTGGCCAAAAC---------------T.........................................................................................................................................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
..............................................................................................................................................................................................TTGGTTTC-GAG-----C------ATTGGCCAAAAC---------------TT........................................................................................................................................................................................2611.001000000100000000000000000000000000000000000000000000000000000000
....................................................AAATAACT--CGTTTCGTCATT---------------------------------------------GAGT................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TTCT---CTTTGCCAACACACA------------ATTCAC------T.............................2611.001000000000000000000000000000010000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................TTGCCAACACACA------------ATTCAC------TTCGTTT.......................2611.001000000000000000000000000000000000100000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................CA------------ATTCAC------TTCGTTTACGCTTCTT..............2411.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................GTAGACCGT-GTAT--TTGA-GTA...........................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................TGT--TTTTGGTTTC-GAG-----C------ATTGGC...............................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
.....TTCAGGACTCCGGCTTCGATGACATGACTGAGAAGG..................................................................................................................................................................................................................................................................................................................................................................................................3611.001000000000000000000000000000000000000000001000000000000000000000
.....TTCAGGACTCCGGCTTCGATGACA..............................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
....................TCGATGACATGACTGAGAAGGT.................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000010000000000000000000000000000000000000000000000000
GAACATTCAGGACTCCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000010000000000000000000000000000000000000000000000000
.....................................................................................................................................AGTTGAAAA--TTGA-----------AACAAAC---TGAAAATT---.......................................................................................................................................................................................................................................................2811.001000000000000001000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................C------TTCGTTTACGCTTCTTTC............1911.001000000000000000000000000000000000001000000000000000000000000000
....ATTCAGGACTCCGGCTTCGATGAC...............................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000001
...................................................................................................................................................................................................TTC-GAG-----C------ATTGGCCAAAAC---------------C.........................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TAGACCGT-GTAT--TTGA-GTAA---------CGTT.............................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................TTTGCCAACACACA------------ATTCAC------TTCGTTT.......................2711.001000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................................................................TGT--TTTTGGTTTC-GAG-----C------ATTGGCC..............................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
..........................................................CT--CGTTTCGTCATT---------------------------------------------GAGTTAA.............................................................................................................................................................................................................................................................................................................2111.001000000100000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................AAAC---------------TTTAGACAT------------ATGTAGACCGT-.........................................................................................................................................................2411.001000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................A------------ATTCAC------TTCGTTTACGCTTC................2111.001000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................................CT---CTTTGCCAACACACA------------ATTCAC------TTCGT.........................2811.001000000000000000000000000000000000010000000000000000000000000000
.......................ATGACATGACTGAGAAGGTT................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................T-TTT-TTTCT---CTTTGCCAAC...........................................................1911.001000000000000000000000000000000000000000000000000000000000000001
.......................ATGACATGACTGAGAAGGTTTACAAAA.........................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000001000000000000000000000000000
........................................................................................................................................................................................GT--TTTTGGTTTC-GAG-----C------ATTG.................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................GAGTTAACGT-TTAAGTTGAAAA--TTGA-----------AAC.........................................................................................................................................................................................................................................................................2911.001000100000000000000000000000000000000000000000000000000000000000
....................TCGATGACATGACTGAGAAGT..................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000010000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................A----TC------------TCTCTT-TTT-TTTCT---CTTTGCCAAC...........................................................2711.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................AAAC---------------TTTAGACAT------------ATGTAGACCGT-GT.......................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
............CTCCGGCTTCGATGACAT.............................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................TCAC------TTCGTTTACGCTTCTT..............2011.001000000000000000000000000000000000000001000000000000000000000000
.......................................................................................................................................................................................................................TTGGCCAAAAC---------------TTTAGACAT------------ATGT.................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................TTGGTTTC-GAG-----C------ATTGGCC..............................................................................................................................................................................................................1911.001000000010000000000000000000000000000000000000000000000000000000
................GGCTTCGATGACATGACTGAGAAGGT.................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................TTTGGTTTC-GAG-----C------ATTGGC...............................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
GAACATTCAGGACTCCGGCTTCGAT..................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................T---------------------------------------------GAGTTAACGT-TTAAGTT..................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000010000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................AACACACA------------ATTCAC------TTCGT.........................1911.001000000000000010000000000000000000000000000000000000000000000000
..........................ACATGACTGAGAAGGTTTAC.............................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000001000000000000000000000000000000
........................................................AACT--CGTTTCGTCATT---------------------------------------------GAGT................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................ATT---TGTTGT--TTTTGGTTTC-GAG-----C------ATTGGC...............................................................................................................................................................................................................2911.001000100000000000000000000000000000000000000000000000000000000000
.......CAGGACTCCGGCTTCGATGACATGACTGAGAAGGT.................................................................................................................................................................................................................................................................................................................................................................................................3511.001000000000000000000000000000000000000000000000000000000000010000
.....TTCAGGACTCCGGCTTCGATGA................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................................................................................TGT--TTTTGGTTTC-GAG-----C------ATTG.................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................G-----C------ATTGGCCAAAAC---------------TTTAGAC...................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................CAC------TTCGTTTACGCTTCTTTCCTTT-----...2511.001000000100000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................GT--TTTTGGTTTC-GAG-----C------ATTGGCCAAA...........................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................AAAC---TGAAAATT---TGTTGT--TTTTT..........................................................................................................................................................................................................................................2320.501000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................AATT---TGTTGT--TTTTGGTT.......................................................................................................................................................................................................................................1830.331000000000000000000000000000000000000000000000000000000000001000
droMoj3
GAACATTCAGGACTCTGGTTTCGATGATATGACTGAGAAGGTTTACAAAAGTAAATAACTC--GTTTCGTCATTGAGTTAA-------------------------------------------CACAT-TTAAGTTACAAA--C-AAACACATGGAA-A--AAACTACA-AAAATTTGATT-GGT--TTTTGGTTTC-GAG-----C------ATTGGCCA-AAAACAAT----------TTTAGACATTTATCTACATATATATAGAGCGT-GTA----TAA-CTAATTTCTTAAA------------TCGTTTCACCTTATATCTCTCTATATATTTCT--C-TTT-TTTCT---CTTTGCC------AAA-----------TTCGTT------TCTGTT--TTTCTTTC-------CA-----SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................GTTTC-GAG-----C------ATTGGCCA-AAA.........................................................................................................................................................................................................2013.003100002
......................................................ATAACTC--GTTTCGTCATTG................................................................................................................................................................................................................................................................................................................................................................1912.002200000
....ATTCAGGACTCTGGTTTCGAT..................................................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
..............................................................................................................................................................................................................................................................CTACATATATATAGAGCGT-G........................................................................................................................................................2011.001000010
.............................................CAAAAGTAAATAACTC--GTTTCGTCATTG................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.....................................................................................................................................................................................................................................................................TATATAGAGCGT-GTA----TAA-CTAAT.........................................................................................................................................2311.001000001
..............................................................................................................................................................................................................................................................CTACATATATATAGAGCGT-GTA----TAA-..............................................................................................................................................2511.001000001
........................................................................................................................................................................................................................................................................................................................................................................TTGCC------AAA-----------TTCGTT------TCTGTT--TTTCT.................2511.001100000
...........................................................................................................................................................................................................................................................................................................................................................TT-TTTCT---CTTTGCC------AAA-----------TTCGTT------..............................2311.001100000
..........................ATATGACTGAGAAGGTTTACAAAAGTAA.....................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
...........................................................................................................................................................................................................................................................................................................................................................................CC------AAA-----------TTCGTT------TCTGTT--TTTCT.................2211.001100000
..............................................................................................................................................................................................................................................................................................................................................................TTTCT---CTTTGCC------AAA-----------TTCGTT------TCTGTT--......................2711.001100000
................................................................................................................................................................................................GGTTTC-GAG-----C------ATTGGCCA-AA..........................................................................................................................................................................................................2011.001000010
..............................................................................................................................................................................................................................................................CTACATATATATAGAGCGT-GT.......................................................................................................................................................2111.001000001
....................................................................................................................................................................................TT-GGT--TTTTGGTTTC-GAG-----C------.....................................................................................................................................................................................................................1911.001000001
...CATTCAGGACTCTGGTTTCGATG.................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.........................................................................................................................................................................................................................................................................................TAA-CTAATTTCTTAAA------------TCGTT................................................................................................................2111.001100000
.............................................................................................................................................................................AATTTGATT-GGT--TTTTGGTTTC-GAG-----C------.....................................................................................................................................................................................................................2611.001100000
.......................................................................................................................................................................................................................................................................................................................CGTTTCACCTTATATCTCTCT...............................................................................................2111.001100000
...............................................................................................................................AT-TTAAGTTACAAA--C-AAACACATGGAA-A--.........................................................................................................................................................................................................................................................................2811.001100000
..........................................................................................................................................CAAA--C-AAACACATGGAA-A--AAACTACA-AAA.............................................................................................................................................................................................................................................................2911.001100000
......................................................ATAACTC--GTTTCGTCATTGA...............................................................................................................................................................................................................................................................................................................................................................2011.001100000
................GGTTTCGATGATATGACTGAGAAGGT.................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.................................................................................................................................................................................................GTTTC-GAG-----C------ATTGGCCA-AAAA........................................................................................................................................................................................................2111.001100000
......................................................ATAACTC--GTTTCGTCATTGAGT.............................................................................................................................................................................................................................................................................................................................................................2211.001000001
.........................................................................TGAGTTAA-------------------------------------------CACAT-TTAAGT...................................................................................................................................................................................................................................................................................................1911.001000001
..................................................................................................................................................................................................TTTC-GAG-----C------ATTGGCCA-AAAA........................................................................................................................................................................................................2011.001000010
........................................................AACTC--GTTTCGTCATTGAGT.............................................................................................................................................................................................................................................................................................................................................................2011.001000010
..................................GAGAAGGTTTACAAAAGTAAATA..................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
......................GATGATATGACTGAGAAGGT.................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
........................................................................TTGAGTTAA-------------------------------------------CACAT-TTAAGT...................................................................................................................................................................................................................................................................................................2011.001100000
..............................GACTGAGAAGGTTTACAAAAGTAA.....................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.................................................................................................................................................................................................GTTTC-GAG-----C------ATTGGCCA-AAAAC.......................................................................................................................................................................................................2211.001000010
droGri2
GAACATTCAGGACTCGAGCTTCGATGACATGACTGAGAAGGTTTACAAAAGTAAATAACT--CGTTCCGTCATT---------------------------------------------GAGTTTACAT-TTAAGTTGAAAA--AAGAAAACAA-GAA-A--AAAC---A----AA----ATATGT--TTTTGGTTTC-GAG-----C------ATTGGCCAAAAA---------------CTTAGACAT--------------ATAGACCGT-GTAA--TTGAAATAACATTTTAAACGTTT--C-----------ATCTTATATC------------TCTCT---T--TTTCT---CTTTGCCAAC---CAATTTTCTATCCATTTCGT------TCTGTTCAACTTTCTG--CTCT-----TTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
........................................................................................................................................................................................................................................................................................................................................................................TTGCCAAC---CAATTTTCTATCC...........................................2111.00110
...............GAGCTTCGATGACATGACTGAGAA....................................................................................................................................................................................................................................................................................................................................................................................................2411.00110
.........................................................................................................................................................................A----AA----ATATGT--TTTTGGTTTC-GAG-----............................................................................................................................................................................................................................2211.00110
.............................................................................................................................................................................................................................................................................................................................................................................AAC---CAATTTTCTATCCATTTCGT------TCT...........................2611.00101
................AGCTTCGATGACATGACTGAG......................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
................................................................................................................................................................................................................................AA---------------CTTAGACAT--------------ATAGACCGT-GTAA--T..................................................................................................................................................2511.00101
droWil2
GAACATTCAGGACCTTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAAGTCTCGTTTTG--ATTTACCTAACAAAATAATGAAACCAACAACCAAAAGAAAATAATAAAGAGTTTTCTT-TTAAGTTGAGAG-------------------------------CAT----A-------TTTTGTTTCC-ATT-----TGT---AATTGGCCCGAAAACAAGCAAACAAACACTTATTC-----------------TAGATCTT-AGAATTTTGC-ATAATTTCCAAACAA----AAAAAACCTTTTCATCTTTAATA------------TCT-----C--T-------TTCTGCA----T-ACA-----------TTTCGT------TCTATTTTCTATTCTCTCCGCT-----TCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................GATGACATGACCGAGAAGGT.................................................................................................................................................................................................................................................................................................................................................................................................2022.50500050
.......................ATGACATGACCGAGAAGGTT................................................................................................................................................................................................................................................................................................................................................................................................2021.50300030
.......................ATGACATGACCGAGAAGGT.................................................................................................................................................................................................................................................................................................................................................................................................1921.00200020
...................TTCGATGACATGACCGAGAAGGTTT...............................................................................................................................................................................................................................................................................................................................................................................................2521.00201010
......................................................................................................................................................................................................................................................................................................................................................................TTCTGCA----T-ACA-----------TTTCGT------TCT...........................2021.00200020
...................TTCGATGACATGACCGAGA.....................................................................................................................................................................................................................................................................................................................................................................................................1920.50100010
........................................................................................................................................................................................................................................AAACAAACACTTATTC-----------------TAGAT.............................................................................................................................................................2120.50100010
.................................................................................................................................................................................................................................................................................................................................................................................T-ACA-----------TTTCGT------TCTATTTTCTATTCTCTC............2820.50101000
..................................................................................................................................................................................................................................................................................................................................TAATA------------TCT-----C--T-------TTCTGCA----T-ACA-----------TTTCGT------..............................2720.50101000
.................................CGAGAAGGTTTACAAAAGTA......................................................................................................................................................................................................................................................................................................................................................................................2020.50100010
.................GCTTCGATGACATGACCGAGAAGGTT................................................................................................................................................................................................................................................................................................................................................................................................2620.50100010
......................................................................................................................................................................................................................................................................................................................................................................TTCTGCA----T-ACA-----------TTTCGT------TCTATTTTCTA...................2820.50100010
.....................................................................................................................................................................................................................................................................................................................................TA------------TCT-----C--T-------TTCTGCA----T-ACA-----------TTTCGT------TCTAT.........................2920.50101000
.........................GACATGACCGAGAAGGTTTACAAAAGTA......................................................................................................................................................................................................................................................................................................................................................................................2820.50101000
.....................CGATGACATGACCGAGAAGGTTTAC.............................................................................................................................................................................................................................................................................................................................................................................................2520.50100010
...............................................................................................................................................................................................................................................................................................................................CTTTAATA------------TCT-----C--T-------TTCTGC...............................................................1920.50100010
......................GATGACATGACCGAGAAGGA.................................................................................................................................................................................................................................................................................................................................................................................................2020.50100010
.....................................................................................................................................................................................................................................................................................................................................TA------------TCT-----C--T-------TTCTGCA----T-ACA-----------TTTCGT------TC............................2620.50101000
..............................................................................................................................................................................................................................................................................................................................TCTTTAATA------------TCT-----C--T-------TTCTGCA----T-ACA-----------TT........................................2720.50101000
.......................................................................................................................................................................................................................................................................................................................................................................TCTGCA----T-ACA-----------TTTCGT------TCTA..........................2020.50100010
.....................CGATGACATGACCGAGAAGGTTTACA............................................................................................................................................................................................................................................................................................................................................................................................2620.50100010
......................GATGACATGACCGAGAAGG..................................................................................................................................................................................................................................................................................................................................................................................................1920.50100100
.....................CGATGACATGACCGAGAAGGTT................................................................................................................................................................................................................................................................................................................................................................................................2220.50100010
................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCTATTCTCTCCGCT-----T..2020.50100010
...............................................................................................................ATAATAAAGAGTTTTCTT-.........................................................................................................................................................................................................................................................................................................1820.50100010
......................GATGACATGACCGAGAAGGTTT...............................................................................................................................................................................................................................................................................................................................................................................................2220.50100010
.................GCTTCGATGACATGACCGAGAAGGT.................................................................................................................................................................................................................................................................................................................................................................................................2520.50100010
...................................................................................................................................................................................................................................................................................................................................................TCT-----C--T-------TTCTGCA----T-ACA-----------TTTCGT------TCTATT........................2820.50101000
..................................................................................................................................................................................................................................................................................................................................TAATA------------TCT-----C--T-------TTCTGCA----T-ACA-----------TTTCGT------TC............................2920.50101000
.........................................................................................................................................................................................................................................AACAAACACTTATTC-----------------TAGATCT...........................................................................................................................................................2220.50100010
.......................................................................................................................................................................................................................................CAAACAAACACTTATTC-----------------TAGATCTT-A........................................................................................................................................................2620.50100010
....................TCGATGACATGACCGAGAAGGT.................................................................................................................................................................................................................................................................................................................................................................................................2220.50100010
...........................................................................................................................................................................................................................................................................................................................................................C--T-------TTCTGCA----T-ACA-----------TTTCGT------T.............................2020.50101000
.........................GACATGACCGAGAAGGTT................................................................................................................................................................................................................................................................................................................................................................................................1820.50100010
dp5
GAACATTCAGGACTCTGCCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAACG--------------------------------GT----TTCTGA--TTTTGGTTCC-AAT-----CA------CTGGCCA-ATA---------------CATAGA------------------TAGCCTTA-ATAT--TTGA-GTAATTTCTAACACGTTCTTC-----------GTAC----TC------------TCT-----C------T---TTTTGCTACA-T-CAA-----------TTTCGT------TTTGTTTACGTTTCTC--CAAT-----CCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................GA------------------TAGCCTTA-ATAT--TTGA-GTA...........................................................................................................................................2113.0030000300000
......................................................ATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAAAAGA..................................................................................................................................................................................................................................................................................................................2813.0030030000000
......................................................................................................................................................................................CTGA--TTTTGGTTCC-AAT-----CA------CTGGCCA-............................................................................................................................................................................................................2612.0020110000000
...............................................................................................................................................................................................................................ATA---------------CATAGA------------------TAGCCTTA-ATAT--TTGA-GT............................................................................................................................................2712.0020110000000
......................................................ATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAAAAG...................................................................................................................................................................................................................................................................................................................2712.0020010100000
......................GATGACATGACCGAGAAGGTT................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000200000
..........GACTCTGCCTTCGATGACAT.............................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.....................CGATGACATGACCGAGAAGGTTTAC.............................................................................................................................................................................................................................................................................................................................................................................................2511.0010010000000
........................................................AGCTCTCGTTTTG--ATTAAC-------------------------------------AAAAAGA..................................................................................................................................................................................................................................................................................................................2611.0010100000000
....................................................AAATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAAAA....................................................................................................................................................................................................................................................................................................................2811.0010000100000
.....................CGATGACATGACCGAGAAGGTT................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100000
..................CTTCGATGACATGACCGAGAAGGT.................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100000
....................................................................................................................................................................................................................................................................................................CTAACACGTTCTTC-----------GTAC----TC------------TCT-----C------T---TTTT.................................................................2911.0010010000000
..........................................TTACAAAAGTAAATAGCTCTCGT..........................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
.............................................................................................................................................................................................................................................................................................................TCTTC-----------GTAC----TC------------TCT-----C------T---TTTTGC...............................................................2211.0010001000000
.............TCTGCCTTCGATGACATGACCGAGA.....................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................A-----------TTTCGT------TTTGTTTACGTTTCTC--CAAT-----CC.2911.0010010000000
..........GACTCTGCCTTCGATGACATGACCGA.......................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
...............................................................................................................................................................................................................................ATA---------------CATAGA------------------TAGCCTTA-ATAT--TTGA-GC............................................................................................................................................2711.0010010000000
.....................................................AATAGCTCTCGTTTTG--ATTAAC-------------------------------------A........................................................................................................................................................................................................................................................................................................................2311.0010010000000
.............................................................................................................................................G--------------------------------GT----TTCTGA--TTTTGGTTCC-AAT-----CA------CT..................................................................................................................................................................................................................2611.0010010000000
..........................................................................................................................TTTACTT-TTAAGTTGAACG--------------------------------.............................................................................................................................................................................................................................................................1911.0010100000000
...........................................................................................................................TTACTT-TTAAGTTGAACG--------------------------------GT----TTCC...................................................................................................................................................................................................................................................2411.0010010000000
..................................................................................................................................................................................................................................................................................................TTCTAACACGTTCTTC-----------GTAC----TC------------T.......................................................................................2311.0010000000100
.....................................................AATAGCTCTCGTTTTG--ATTAAC-------------------------------------.........................................................................................................................................................................................................................................................................................................................2211.0010100000000
............................................................................................................................................................................................................................CA-ATA---------------CATAGA------------------TAGCCTTA-.........................................................................................................................................................1911.0010100000000
.....TTCAGGACTCTGCCTTCGATGACATG............................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
................................................................................................................................................................................................................................................................................................ATTTCTAACACGTTCTTC-----------G.............................................................................................................1911.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................TGCTACA-T-CAA-----------TTTCGT------TTTGTT........................2311.0010100000000
..............CTGCCTTCGATGACATGACCGAGAAGGC.................................................................................................................................................................................................................................................................................................................................................................................................2811.0010010000000
...............................................................................................................................................................................................................................................................................................AATTTCTAACACGTTCTTC-----------GTAC----TC------------TC......................................................................................2711.0010010000000
....................................................................................................................................................................................................................................................................................AT--TTGA-GTAATTTCTAACACGT..............................................................................................................................2211.0010010000000
..ACATTCAGGACTCTGCCTTC.....................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
..................................................GTAAATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAA......................................................................................................................................................................................................................................................................................................................2811.0010010000000
................................................................................................................................................................................................GGTTCC-AAT-----CA------CTGGCCA-ATA---------------CATA......................................................................................................................................................................................2511.0010100000000
.......................................................................................................................................................................................TGA--TTTTGGTTCC-AAT-----CA------CTGGCCA-............................................................................................................................................................................................................2511.0010100000000
.......CAGGACTCTGCCTTCGATGAC...............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
.........................................................GCTCTCGTTTTG--ATTAAC-------------------------------------AAAAAGA..................................................................................................................................................................................................................................................................................................................2511.0010100000000
......................................................................................................................................................................................................................................................A------------------TAGCCTTA-ATAT--TTGA-GT............................................................................................................................................1911.0010010000000
..........................................................................................................................................AACG--------------------------------GT----TTCTGA--TTTTGGTT.......................................................................................................................................................................................................................................2011.0010010000000
droPer2
GAACATTCAGGACTCTGCCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAACG--------------------------------GT----TTCTGA--TTTTGGTTCC-AAT-----CA------CTGGCCA-ATA---------------CATAGA------------------TAGCCTTA-ATAT--TTGA-GTAATTTCAAACACGTTCTTC-----------GTAC----TC------------TCT-----C------T---TTTTGCTACA-T-CAA-----------TTTCGT------TTTGTTTACGTTTCTC--CAAT-----CCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
GAACATTCAGGACTCTGCCTTCGAT..................................................................................................................................................................................................................................................................................................................................................................................................................25110.00101000000
...........................................................................................................................TTACTT-TTAAGTTGAACG--------------------------------GT----TTCTGA--T..............................................................................................................................................................................................................................................2713.003300000
......................................................................................................................................................................................................................................................................................................................................................................TTTTGCTACA-T-CAA-----------TTTCGT------TTTGT.........................2513.003300000
...CATTCAGGACTCTGCCTTC.....................................................................................................................................................................................................................................................................................................................................................................................................................1913.003300000
..........GACTCTGCCTTCGATGACATGACCGA.......................................................................................................................................................................................................................................................................................................................................................................................................2613.003300000
.........................................................................................................................................................................................................................................................................................................................................................................TGCTACA-T-CAA-----------TTTCGT------TTTGT.........................2213.003300000
..............................................................................................................................................................................................................................................................................................................CTTC-----------GTAC----TC------------TCT-----C------T---TTTTGCT..............................................................2213.003300000
..ACATTCAGGACTCTGCCTT......................................................................................................................................................................................................................................................................................................................................................................................................................1912.002200000
....ATTCAGGACTCTGCCTTCGATGACATGAC..........................................................................................................................................................................................................................................................................................................................................................................................................2912.002200000
...........................................................................................................................................ACG--------------------------------GT----TTCTGA--TTTTGGTTCC-....................................................................................................................................................................................................................................2112.002200000
....................................................................................................................................................................................TTCTGA--TTTTGGTTCC-AAT-----CA------CTGGCCA-A...........................................................................................................................................................................................................2912.002200000
...............................................................................................................................................................................................................................................................................................AATTTCAAACACGTTCTTC-----------GTAC----TC------------T.......................................................................................2612.002200000
GAACATTCAGGACTCTGCC........................................................................................................................................................................................................................................................................................................................................................................................................................1912.002200000
...................................................................................................................................TAAGTTGAACG--------------------------------GT----TTCTGA--TTTTGGTTCC-....................................................................................................................................................................................................................................2912.002200000
...............................................................................................................................................................................................................................ATA---------------CATAGA------------------TAGCCTTA-ATAT--TTGA-GT............................................................................................................................................2712.002002000
..ACATTCAGGACTCTGCCTTCGAT..................................................................................................................................................................................................................................................................................................................................................................................................................2312.002200000
.......................................................................................................................................................................................................................................................................................................................................................................TTTGCTACA-T-CAA-----------TTTCGT------..............................1912.002200000
.......................................................................................................................................................................................................................................................................................................ACACGTTCTTC-----------GTAC----TC------------TCT-----C------T---.....................................................................2212.002200000
......................................................................................................................................................................................................................................................................................................................................................................TTTTGCTACA-T-CAA-----------TTTCGT------..............................2012.002200000
.....................................................................................................................................................................................TCTGA--TTTTGGTTCC-AAT-----CA------C...................................................................................................................................................................................................................2112.002200000
..ACATTCAGGACTCTGCCTTCGATG.................................................................................................................................................................................................................................................................................................................................................................................................................2412.002200000
..........................................................................................................................................................................................................................................................................................GA-GTAATTTCAAACACGTTCTTC-----------G.............................................................................................................2411.001001000
............................................................................................................................................CG--------------------------------GT----TTCTGA--TTTTGGTTCC-AAT-----C...........................................................................................................................................................................................................................2411.001010000
.......................................................................................................................................................................................................AAT-----CA------CTGGCCA-ATA---------------CATAGA------------------..................................................................................................................................................................2111.001001000
...CATTCAGGACTCTGCCTT......................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.............................................................................................................................................................................................................................................................................................................TCTTC-----------GTAC----TC------------TCT-----C------T---TTT..................................................................1911.001100000
..............................................................................................................................................................................................................................................................................................................CTTC-----------GTAC----TC------------TCT-----C------T---TTTTGCC..............................................................2211.001100000
.........................................................................................................................................................................................................................................................................................................................................................................TGCTACA-T-CAA-----------TTTCGT------TTTGC.........................2211.001100000
..........................................................................................................................................AACG--------------------------------GT----TTCTGA--TTTTGGTTCC-....................................................................................................................................................................................................................................2211.001100000
.....................................................................................................................................................................................................................................................................................................................................TC------------TCT-----C------T---TTTTGCTACA-T-CA......................................................2011.001010000
......................................................ATAGCTCTCGTTTTG--ATTAAC-------------------------------------A........................................................................................................................................................................................................................................................................................................................2211.001001000
......................................................................................................................................................................................................................................................................................................AACACGTTCTTC-----------GTAC----TC------------TCT-----C------T---T....................................................................2411.001100000
......................................................................................................................................GTTGAACG--------------------------------GT----TTCTGA--TTTTGGT........................................................................................................................................................................................................................................2311.001001000
.AACATTCAGGACTCTGCCTTCGG...................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.................................CGAGAAGGTTTACAAAAGTA......................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
.AACATTCAGGACTCTGCCC.......................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
............CTCTGCCTTCGATGACATGACCGA.......................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.........................................................................................................................................................................................................................................................................................................................................................................TGCTACA-T-CAA-----------TTTCGT------TTTGTT........................2311.001001000
.......................................................................................................................................................................................TGA--TTTTGGTTCC-AAT-----CA------CTGGCCA-............................................................................................................................................................................................................2511.001010000
..............................................................................................................................................................................GT----TTCTGA--TTTTGGTTCC-....................................................................................................................................................................................................................................1811.001100000
.....................................................AATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAA......................................................................................................................................................................................................................................................................................................................2511.001010000
.AACATTCAGGACTCTGCCTTCGA...................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...................................................................................................................................................................................................................................................TAGA------------------TAGCCTTA-ATAT--TTGA-GT............................................................................................................................................2211.001001000
...................................................................................................................................................................................................................................................................................................................................................................................CAA-----------TTTCGT------TTTGTTTACGT...................2011.001100000
......................GATGACATGACCGAGAAGG..................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
......................................................ATAGCTCTCGTTTTG--ATT.................................................................................................................................................................................................................................................................................................................................................................1811.001100000
................................................................................................................................T-TTAAGTTGAACG--------------------------------GT----TTCTGA--TTTT...........................................................................................................................................................................................................................................2511.001010000
.......................................................................................................................................................................................................................................................................................................................................................................TTTGCTACA-T-CAA-----------TTTCGT------TTTGT.........................2411.001100000
..................................................................................................................................................................................................................................................ATAGA------------------TAGCCTTA-ATAT--TTGA-GTA...........................................................................................................................................2411.001001000
......................GATGACATGACCGAGAAGGT.................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
.AACATTCAGGACTCTGCCTTCGAT..................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.........GGACTCTGCCTTCGATGACATGACC.........................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
............................................................................................................................................................................................................................................................................................................................................................................TACA-T-CAA-----------TTTCGT------TTTGT.........................1911.001100000
.............................................................................................................................................................................................................................................................................................GTAATTTCAAACACGTTCTTC-----------G.............................................................................................................2211.001100000
.......................................................................................................................GAGTTTACTT-TTAAGTTGAAC..............................................................................................................................................................................................................................................................................................2111.001100000
......TCAGGACTCTGCCTTCGATGACATGAC..........................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.....................CGATGACATGACCGAGAAGGT.................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
droAna3
GAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAAACAA--A-----------AA------------AAC-CCATTGTGC--TTTTGGTTCG-ATT-----CACCAAAATTGGCCA-AAA---------------CTTAGACA----------------TAGCCTTTAATAA--TTGA-GTAACTTCTAACGCGTTTTCC-----------TTCAACCATC------------TCTCTCA-C--TCTCT---TTTTGCAACC---GTA-----------TTTGGT------TTTGTTAACGTTTTTC--TA-TTCC-----SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................CGATGACATGACCGAGAAGG..................................................................................................................................................................................................................................................................................................................................................................................................2012.002010010
......................................................................................................................................................................................................................................................................................................................................................CTCA-C--TCTCT---TTTTGCAACC---GTA-----------TTTG......................................2712.002110000
......................................................................................................................................................................................................................ATTGGCCA-AAA---------------CTTAGAC...................................................................................................................................................................................1812.002020000
....................................................................................................................................................................................TTGTGC--TTTTGGTTCG-ATT-----CACC........................................................................................................................................................................................................................2311.001010000
....................................................................................................................................................................................................................................................................................................CTAACGCGTTTTCC-----------TTCAACCATC------------T.......................................................................................2511.001000010
..........................................TTACAAAAGTAAATAGCTCTCGTT.........................................................................................................................................................................................................................................................................................................................................................................2411.001000010
....................................................................................................................................................................................................................AAATTGGCCA-AAA---------------CTTAGACA----------------TA................................................................................................................................................................2311.001010000
...................................................................................................................................................................................................................................................................................................................................................................................GTA-----------TTTGGT------TTTGTTAACGTTTTT...............2411.001010000
....................................................AAATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAAA.....................................................................................................................................................................................................................................................................................................................2711.001010000
...................................................................................................................................................................................................................AAAATTGGCCA-AAA---------------CTTAGACA----------------TAGCCT............................................................................................................................................................2811.001010000
................GGCTTCGATGACATGACCGAGAAGGT.................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.......................................................................................................................................................................................................................................................................................................................................................TCA-C--TCTCT---TTTTGCAACC---........................................................1911.001010000
...............................................AAAGTAAATAGCTCTCGTTTTG--ATTAAC-------------------------------------.........................................................................................................................................................................................................................................................................................................................2811.001010000
...................................................................................................................................................................................ATTGTGC--TTTTGGTTCG-ATT-----CACC........................................................................................................................................................................................................................2411.001010000
.........................GACATGACCGAGAAGGTTT...............................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
...............................................................................................................................................................................................................................................................................TTAATAA--TTGA-GTAACTTCTAACGCGT..............................................................................................................................2711.001001000
...................................................................................................................................................................................................................AAAATTGGCCA-AAA---------------CTTAGA....................................................................................................................................................................................2011.001010000
...................................................................................................................................................................................................................AAAATTGGCCA-AAA---------------CTTAGAC...................................................................................................................................................................................2111.001010000
........................................................AGCTCTCGTTTTG--ATTAAC-------------------------------------AAA......................................................................................................................................................................................................................................................................................................................2211.001100000
........................................................................................................................................................................................................TT-----CACCAAAATTGGCCA-AAA---------------CTTAGA....................................................................................................................................................................................2611.001010000
GAACATCCAGGACTCTGGCTTC.....................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
......................GATGACATGACCGAGAAGGT.................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
..................................................................................................................................................................................CATTGTGC--TTTTGGTTCG-A...................................................................................................................................................................................................................................1911.001100000
......................................................................................................................................................................................................................................................................................................................................................CTCA-C--TCTCT---TTTTGCAACC---........................................................2011.001001000
...................................................................................................................................................................................................................AAAATTGGCCA-AAA---------------CTTAGACA----------------T.................................................................................................................................................................2311.001010000
.................................................................TTTG--ATTAAC-------------------------------------AAAAAGAGTTTACT...........................................................................................................................................................................................................................................................................................................2411.001000010
.............................................................................................................................................................................................................................................................................................................TTTCC-----------TTCAACCATC------------TCTCTCA-C--TCTC.........................................................................2711.001010000
.....................................................AATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAAAAG...................................................................................................................................................................................................................................................................................................................2811.001010000
....................................................AAATAGCTCTCGTTTTG--ATTAAC-------------------------------------.........................................................................................................................................................................................................................................................................................................................2311.001010000
...............................................................................................................................................................................................................................................................................................AACTTCTAACGCGTTTTCC-----------TT............................................................................................................2111.001100000
....................................................................................................................................................................................................................AAATTGGCCA-AAA---------------CTTAGAC...................................................................................................................................................................................2011.001010000
......................................................................................................................................................................................................................ATTGGCCA-AAA---------------CTTAGACA----------------TAGCCTTC..........................................................................................................................................................2711.001010000
................GGCTTCGATGACATGACCGAGAAGGG.................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.......................ATGACATGACCGAGAAGGT.................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
......................................................................................................................................................................................................................ATTGGCCA-AAA---------------CTTAGACA----------------TAGCC.............................................................................................................................................................2411.001010000
.............................................................................................................................................................................................................................A-AAA---------------CTTAGACA----------------TAGCCTTTATA.......................................................................................................................................................2311.001100000
...................................................................................................................................................................................................................AAAATTGGCCA-AAA---------------CTTAGACA----------------TAGC..............................................................................................................................................................2611.001010000
..................................GAGAAGGTTTACAAAAGTA......................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
..................................................................................................................................................................................................................CAAAATTGGCCA-AAA---------------CTTAGACA----------------T.................................................................................................................................................................2411.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................A-----------TTTGGT------TTTGTTAACGTTTTT...............2211.001010000
..............................................................................................................................................CAA--A-----------AA------------AAC-CCATTGTGC--TT.............................................................................................................................................................................................................................................2011.001010000
.................................................................TTTG--ATTAAC-------------------------------------AAAAAGAGT................................................................................................................................................................................................................................................................................................................1911.001010000
droBip1
GAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTCAC-------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAAA--A--A-----------AA------------CAC-CCATTGTGC--TTTTGGTTCG-ATT---CCCAC----ATTGGCCA-AAA---------------CTTAGACA----------------TAGCCTTTAATAA--TTGA-GTAATTTCTAACGCGTTTTCC-----------TTCAACCATC------------TCTCTCA-C--TCTCT---TTTTGCTACC---GTA-----------TTTGGT------TTTGTTAACGTTTCTC--TA-TTCC-----SizeHit CountTotal NormTotal
No Reads
droKik1
GAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCTTTTTG--ATCCACCAAAA-------------------------ACAAA--CAAAAGAGTTTACTTTTTAAGTTGAAAA--ACAAACA--A---AAAACACAC---AAAACAC----TTGTGC--TTTTGGTTCC-AAAACAT-TTA----ATTGGCCCAAAA-C-------------CTTAGACCT---------------TAGACTTA-ATAA--CTGA-GTTACTTCTAACGCGTTCTCC-----------GTACTC--TC------------CCT-----C--TCTCT---TTTTGCTACC---AAATTC--------TTTGGTGGATTCTCTGTTAACGTTTCTC-------CATATATSizeHit CountTotal NormTotal
No Reads
droFic1
GAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAAA-------------------------------CAC----TTGTGCACTTTTGGTTCC-AAC-----CAT----ATTGGCCA-AAA---------------CTTAGACA----------------TAGCCTTT-ATAA--TTGA-GTAACTTCTAACGCGTTCTCC-----------GTTAACCATC------------TCT-----C--TTCCTACATTTTGCTATA---AAA-----------TTTCGT------TCTGTTAACGTTTCTC-------CC-----SizeHit CountTotal NormTotal
No Reads
droEle1
GAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAACA--C---------------------------ACAC----TTGTGC--TTTTGGTTTC-AAT-----CAC----ATTGGCCCAAAA---------------CTTAGACGT--------------TTAGCCCTT-ACAA--TTGA-GTAA-TTCTAACGCGTTCTCC-----------GTACCTCATC------------TCT-----C--TTCCA--TTTTTGCTACC---AAA-----------TTTCGT------TCTGTTAACGTTTCTC-------CC-----SizeHit CountTotal NormTotal
No Reads
droRho1
GAACATCCAGGACTCTGGCTTTGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAAA-------------------------------CAC----TTGTGC--TTTTGGTTTC-AAT-----CAC----ATTGGCCCAAAA---------------CTTAGACA----------------TAGCCTTT-ATAA--TTGA-GTAACTTCTAACGCGTTCTCC-----------GTAACTCATC------------TCT-----C--TTCCA--TTTTTGCTACC---AAA-----------TTTCGT------TCTGTTAACGTTTCTC-------CC-----SizeHit CountTotal NormTotal
No Reads
droBia1
CAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--AATAAC-------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAAA-------------------------------CAC----TTGTGC--TTTTGGTTTC-CAA-----CAC----ATTGGCCA-AAA---------------CTTAGACA----------------TAGCCTTT-ATAA--CTGA-GTAACTTCTAACGCGTTCTCC-----------GTACCCCATC------------TCT-----CTCTTCTA---CTTTGCTACC---AAA-----------TTTCGT------TCTGTTAACGTTTCTC-------CC-----SizeHit CountTotal NormTotal
No Reads
droTak1
CAACATCCAGGACTCTGACTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--AATAAC-------------------------------------CGAAAGAGTTTACTT-TTAAGTTAAAAA-------------------------------CAC----TTGTGC--TTTTGGTTCACAAT-----CAC----ATTGGCCA-AAA---------------CTTAGACA----------------TAGCCTTT-ATAA--TTGA-GTAACTTCTAACGCGTTCTCC-----------GTACCCCATC------------TCT-----CTC-TCCT---TTTTGCTACC---AAA-----------TTTCGT------TCTGTTAACGTTTCTC-------CC-----SizeHit CountTotal NormTotal
No Reads
droEug1
GAACATCCAGGACTCTGGCTTTGATGACATGACTGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAAA-------------------------------CAC----TTGTGC--TTTTGGTTTC-AAC-----CAC----ATTGGCCA-AAA---------------CTTAGACA----------------TAGCCTTT-ATAA--CTGA-GTAATTTCTAACGCGTTCTCC-----------GTACTCCATC------------TCT-----C--TTCCC---TTTTGCTATG---AAA-----------TTTCGT------TCTGTTAATGTTTCTC-------CT-----SizeHit CountTotal NormTotal
No Reads
dm3
TAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAAA-------------------------------CAC----TTGTAC--TTTTGGTTTC-AAT-----CAC----ATTGGCCA-AAA---------------CTTAGACA----------------TAGCCTTC-ATAA--TTGA-GTAATTTCTAACGCGTTTTCC-----------GTACTCCATC------------TCT-----C--TTCCT---ATTTGCCGCA-CAAAA-----------TTTCGT------TCTGTTAACGTTTCAC-------CC-----SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....ATCCAGGACTCTGGCTTCGATGAC...............................................................................................................................................................................................................................................................................................................................................................................................................24113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005500000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...................TTCGATGACATGACCGAGAAGGTT................................................................................................................................................................................................................................................................................................................................................................................................24112.00120000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000010200000000000000000000000000000000000000000000000000000000000100000000001000000000000001000000000000000200000
..............................................................................................................................................................................................................................................................................................................TTCC-----------GTACTCCATC------------TCT-----C--TTCCT---ATT..................................................................26111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030205010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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............................ATGACCGAGAAGGTTTACAAAAGTAAAT...................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................TTAAC-------------------------------------AAAAAGAGTTTACTT-TTAAGT...................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................T-----C--TTCCT---ATTTGCCGCA-CAAAA-----------TTA.......................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................T---ATTTGCCGCA-CAAAA-----------TTTCGT------TCTG..........................2611.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................C-------------------------------------AAAAAGAGTTTACTT-TTAAGTTG.................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................CCA-AAA---------------CTTAGACA----------------TAGCCTTC-ATAA--T..................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................AGTTTACTT-TTAAGTTGAAAA-------------------------------CA............................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................CC-----------GTACTCCATC------------TCT-----C--TTCCT---.....................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TTTCGT------TCTGTTAACGTTTCAC-------C......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................ACGCGTTTTCC-----------GTACTCCATC------------TCT-----C--.............................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................TTTCTAACGCGTTTTCC-----------GTACTCCATC------------........................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................AATAGCTCTCGTTTTG--ATTA................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.................................................................................................................................................................................................................C----ATTGGCCA-AAA---------------CTTAGACA----------------TAGCC.............................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....ATCCAGGACTCTGGCTTCGATGACAT.............................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................AGCTCTCGTTTTG--ATTAA...............................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TCCAGGACTCTGGCTTCGATGACATG............................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CCGAGAAGGTTTACAAAAGTAAATAGC................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................ATTTCTAACGCGTTTTCC-----------GTACTCCATC------------........................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................................................................................TC-ATAA--TTGA-GTAATTTCTAACGCGT..............................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...................................................................................................................................................................................................................................................................................................................................................TCT-----C--TTCCT---ATTTGCCGCA-CAAAA-----------TT........................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................TTGGCCA-AAA---------------CTTAGACA----------------TAGCCTT...........................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TGGCTTCGATGACATGACCGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................ACA----------------TAGCCTTC-ATAA--TTGA-GTAATTTC......................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................CGTTTTCC-----------GTACTCCATC------------TCT-----C--TT...........................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TTCGATGACATGACCGAGAAGGTTTACAA...........................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................ACGCGTTTTCC-----------GTACTCCATC------------........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................CTAACGCGTTTTCC-----------GTACTCCATC------------TC......................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................ACCGAGAAGGTTTACAAAAGTAAATAGC................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................AA--TTGA-GTAATTTCTAACGCGTTTTCC-----------..............................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................GA-GTAATTTCTAACGCGTTTTCC-----------GTAC..........................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................................................................................................................AAAGAGTTTACTT-TTAAGTTGA................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................TAC--TTTTGGTTTC-AAT-----CAC----ATTGGC...............................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................AAAA-----------TTTCGT------TCTGTTAACGTTTC................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................C------------TCT-----C--TTCCT---ATTTGCCGCA-CAAAA-----------TT........................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CTTCGATGACATGACCGAGAAGGT.................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CATCCAGGACTCTGGCTTC.....................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TCGATGACATGACCGAGAAGGTTT...............................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTAAATAGCTCTCGTTTTG--ATTA................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AACATCCAGGACTCTGGCTTCGATGACAT.............................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................A--TTGA-GTAATTTCTAACGCGT..............................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GATGACATGACCGAGAAGGTT................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................C-----------GTACTCCATC------------TCT-----C--TTCCT---ATTTGC...............................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..ACATCCAGGACTCTGGCTTCGATGACAT.............................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................T-----C--TTCCT---ATTTGCCGCA-CAAAA-----------TTTCG.....................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAAA-------------------------------CAC----TTGTGC--TTTTGGTTTC-AAT-----CAC----ATTGGCCA-AAA---------------CTTAGACA----------------TAGCCTTC-ATAA--TTGA-GTAATTTCTAACGCGTTTTCC-----------GTACTCCATC------------TCT-----C--TTCCT---ATTTGCCGCA-CAAAA-----------TTTCGT------TCTGTTAACGTTTCTC-------CC-----SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................TGCCGCA-CAAAA-----------TTTCGT------TCTGTT........................2414.00400000030001000000
...................TTCGATGACATGACCGAGAAGGTT................................................................................................................................................................................................................................................................................................................................................................................................2413.00300000012000000000
.......................................................................................................................................................................................................................................................................................................................................................................TTTGCCGCA-CAAAA-----------TTTCGT------TCTGTT........................2613.00300000030000000000
...............................................................................................................................................................................................................................................................................................................................ACTCCATC------------TCT-----C--TTCCT---ATTTGCCGCA-..........................................................2712.00200200000000000000
........................................................................................................................................................................................................................................................................................................................................................................TTGCCGCA-CAAAA-----------TTTCGT------TCTGTT........................2512.00200000010010000000
......................................................ATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAAAAG...................................................................................................................................................................................................................................................................................................................2712.00200200000000000000
.....TCCAGGACTCTGGCTTCGATGACAT.............................................................................................................................................................................................................................................................................................................................................................................................................2512.00200000000000020000
...................................................................TG--ATTAAC-------------------------------------AAAAAGAGTTTACTT-T........................................................................................................................................................................................................................................................................................................2411.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................TCCT---ATTTGCCGCA-CAAAA-----------TTTCGT------..............................2511.00100010000000000000
...............................................................................................................................................................................................................CAC----ATTGGCCA-AAA---------------CTTAGACA----------------TAGCCT............................................................................................................................................................2811.00101000000000000000
............................................................CTCGTTTTG--ATTAAC-------------------------------------AAAAA....................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
.............................................................................................................................................................................................................................................................................................................................................................................GCA-CAAAA-----------TTTCGT------TCTGTT........................2011.00100100000000000000
........................................................................................................................................................................................................AT-----CAC----ATTGGCCA-AAA---------------CTTAGACA----------------TAGC..............................................................................................................................................................2811.00100000001000000000
.......................................................................................................................GAGTTTACTT-TTAAGT...................................................................................................................................................................................................................................................................................................1611.00100000010000000000
......................GATGACATGACCGAGAAGGT.................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................TGCCGCA-CAAAA-----------TTTCGT------TCTG..........................2211.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................AAAA-----------TTTCGT------TCTGTTAACG....................2011.00100000000100000000
.......................................................................................................................................................................................................................................................................................................................................................................TTTGCCGCA-CAAAA-----------TTTCGT------TCTGT.........................2511.00100000010000000000
..........................................TTACAAAAGTAAATAGCTCTC............................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
.................................................................................................................................................................................................................................................................................................TTTCTAACGCGTTTTCC-----------GTACTCCATC------------........................................................................................2711.00100000001000000000
.....TCCAGGACTCTGGCTTCGATGACATGA...........................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
........................................................................................................................................................................................................................................................................................................................................................................TTGCCGCA-CAAAA-----------TTTCGT------TCTGT.........................2411.00100000010000000000
......................................................................................................................................................................................................................................................................................................................................................................ATTTGCCGCA-CAAAA-----------TTTCGT------TC............................2311.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................AAA-----------TTTCGT------TCTGTTAACG....................1911.00100000010000000000
.......CAGGACTCTGGCTTCGATGACATGAC..........................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
..............................................................................................................................................................................................................................................................................................................TTCC-----------GTACTCCATC------------TCT-----C--TTCCT---AT...................................................................2511.00100001000000000000
...............................................................................................................................................................................................................................................................................................AATTTCTAACGCGTTTTCC-----------GT............................................................................................................2111.00100010000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TGCCGCA-CAAAA-----------TTTCGT------TCTGTTAA......................2611.00100000001000000000
....ATCCAGGACTCTGGCTTC.....................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
..............CTGGCTTCGATGACATGAC..........................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
..........................................................................................................................................................................................................................GCCA-AAA---------------CTTAGACA----------------TAGCCC............................................................................................................................................................2111.00110000000000000000
...............................................................................................................................................................................................................CAC----ATTGGCCA-AAA---------------CTTAGAC...................................................................................................................................................................................2111.00100000000000100000
...............................................................................................................................................................................................................................................................................................AATTTCTAACGCGTTTTCC-----------GTACTCCA......................................................................................................2711.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................T---ATTTGCCGCA-CAAAA-----------TTTCGT------TCTGTT........................2811.00100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................CGCA-CAAAA-----------TTTCGT------TCTGTTAACGTT..................2711.00100000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................................CGT------TCTGTTAACGTTTCTC-------CC-----2111.00100010000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................TTCGT------TCTGTTAACGTTTCTC-------CC-----2311.00100010000000000000
.................................................................TTTG--ATTAAC-------------------------------------AAAAAGAGTTTACTT-T........................................................................................................................................................................................................................................................................................................2611.00100010000000000000
............................................................................................................................................................................................................................................................................................................................................................................CGCA-CAAAA-----------TTTCGT------TCTGTTAACGTTT.................2811.00100010000000000000
.....................................................................................................................................................................................................................................................................................A--TTGA-GTAATTTCTAACGCGTTTTCC-----------G.............................................................................................................2711.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................T---ATTTGCCGCA-CAAAA-----------TTTCGT------TCTGT.........................2711.00100000000100000000
........AGGACTCTGGCTTCGATGACA..............................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000000000
.........................................................................................................................................................................................................T-----CAC----ATTGGCCA-AAA---------------CTTAGACA----------------T.................................................................................................................................................................2411.00100000001000000000
...........................................TACAAAAGTAAATAGCTCTCGT..........................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
..................................................GTAAATAGCTCTCGTTTTG--AT..................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
..................................................................................................................................................................................................................................................TTAGACA----------------TAGCCTTC-ATAA--TTGA-GT............................................................................................................................................2511.00100000010000000000
...................................................................................................................................................................................................................................................................................TAA--TTGA-GTAATTTCTAACGCGTTTTC..........................................................................................................................2711.00100000000000001000
CAACATCCAGGACTCTGGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
......................................................................................................................................................................................................................ATTGGCCA-AAA---------------CTTAGACA----------------TAGCCC............................................................................................................................................................2511.00100100000000000000
..............................................................................................................................................................................................................................................................................TTC-ATAA--TTGA-GTAATTTCTAACGCGTT.............................................................................................................................2811.00100000001000000000
................GGCTTCGATGACATGACCG........................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
.......................................................................................................................GAGTTTACTT-TTAAGTTGAAA..............................................................................................................................................................................................................................................................................................2111.00100010000000000000
..................................................................................................................................................................................................................................................................................................................................................................................AAAA-----------TTTCGT------TCTGTTAACGTTTCT...............2511.00100010000000000000
................................................................................................................................................................................................................AC----ATTGGCCA-AAA---------------CTTAGAC...................................................................................................................................................................................2011.00100010000000000000
.......CAGGACTCTGGCTTCGATGACATGACC.........................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
...................................................................................................................................................................................................TTC-AAT-----CAC----ATTGGCCA-AAA---------------CTTAGA....................................................................................................................................................................................2611.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................GCA-CAAAA-----------TTTCGT------TCTGG.........................1920.50100100000000000000
droSec2
CAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAAA-------------------------------CAC----TTGTGC--TTTTGGTTTC-AAT-----CAC----ATTGGCCA-AAA---------------CTTAGACA----------------TAGCCTTC-ATAA--TTGA-GTAATTTCTAACGCGTTTTCC-----------GTACTCCATC------------TCT-----C--TTCCT---ATATGCCGCA-AAAAA-----------TTTCGT------TCTGTTAACGTTTCTC-------CC-----SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................A----------------TAGCCTTC-ATAA--TTGA-GT............................................................................................................................................1915.0050050
.................................................................................................................................................................................................GTTTC-AAT-----CAC----ATTGGCCA-A...........................................................................................................................................................................................................2012.0020020
......................................................................................................................................................................................................................................................................................................AACGCGTTTTCC-----------GTACTCCATC------------TCT-----C--T............................................................................2711.0010010
................................................................................................................................................................................................................................AA---------------CTTAGACA----------------TAGCCTTC-ATAA--TTGA-GT............................................................................................................................................2811.0010010
..........................................TTACAAAAGTAAATAGCTCTCGTT.........................................................................................................................................................................................................................................................................................................................................................................2411.0010100
.....................................................................................................................AAGAGTTTACTT-TTAAGTTGA................................................................................................................................................................................................................................................................................................2111.0010100
................................................................................................................................................................................................................................AA---------------CTTAGACA----------------TAGCCTTC-ATAA--TTGA-..............................................................................................................................................2611.0011000
.....................................................AATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAA......................................................................................................................................................................................................................................................................................................................2511.0010100
...............TGGCTTCGATGACATGACCGAGAAGGT.................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
......................................................ATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAAAA....................................................................................................................................................................................................................................................................................................................2611.0010010
........AGGACTCTGGCTTCGATGACA..............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
...CATCCAGGACTCTGGCTTC.....................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
....................TCGATGACATGACCGAGAAGGTT................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
....................................................................................................................AAAGAGTTTACTT-TTAAGTTGAA...............................................................................................................................................................................................................................................................................................2311.0010010
......................GATGACATGACCGAGAAGGTT................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.........................GACATGACCGAGAAGGTTTACAAAAGT.......................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
..................................................................TTG--ATTAAC-------------------------------------AAAAAGAGTTTACT...........................................................................................................................................................................................................................................................................................................2311.0010010
...................................................................................................................AAAAGAGTTTACTT-TTAAGTTGAAA..............................................................................................................................................................................................................................................................................................2511.0010010
....................................................................G--ATTAAC-------------------------------------AAAAAGAGTTTACT...........................................................................................................................................................................................................................................................................................................2111.0010100
..........................................................................................................................................................................................................................................................................AGCCTTC-ATAA--TTGA-GTA...........................................................................................................................................1811.0010010
.........................................................................................................................................................................................................................GGCCA-AAA---------------CTTAGACA----------------TAG...............................................................................................................................................................1911.0010010
........................................................................................................................................................................................................................................................................................TTGA-GTAATTTCTAACGCG...............................................................................................................................1911.0010010
......................................................ATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAA......................................................................................................................................................................................................................................................................................................................2411.0011000
..............CTGGCTTCGATGACATGACCGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
....................................................AAATAGCTCTCGTTTTG--ATTAAC-------------------------------------A........................................................................................................................................................................................................................................................................................................................2411.0010010
....................................................................................................................AAAGAGTTTACTT-TTAAGTTGAAAA-------------------------------..............................................................................................................................................................................................................................................................2511.0010010
..................................................................TTG--ATTAAC-------------------------------------AAAAAGAGT................................................................................................................................................................................................................................................................................................................1811.0010010
..................................................................................................................................................................................................................................................TTAGACA----------------TAGCCTTC-ATAA--TTGA-GT............................................................................................................................................2511.0010010
.............................................................................................................................................................................................................................................................................................................................GTACTCCATC------------TCT-----C--TTCCT---ATATGCCG.............................................................2711.0011000
...............................................................................................................................................................................................................................................................................................AATTTCTAACGCGTTTTCC-----------GT............................................................................................................2111.0010010
.................................................................TTTG--ATTAAC-------------------------------------AAAAAGAGTTACT............................................................................................................................................................................................................................................................................................................2340.2510010
droYak3
CAACATCCAGGACTCTGGCTTCGATGACATGACTGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAAA-------------------------------CAC----TTGTGC--TTTTGGTTTC-AAT-----CAC----ATTGGCCA-AAA---------------CTTAGACA----------------TAGCCTTT-ATAA--TTGA-GTAATTTCTAACGCGTTTTCC-----------GTACTCCATC------------TCT-----C--TTCCT---ATTTGCCACC--AAAA-----------TTTCGT------TCTGTTAACGTTTCTC-------CC-----SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................AAGAGTTTACTT-TTAAGTTGAAA..............................................................................................................................................................................................................................................................................................2313.00300000030000
.........................GACATGACTGAGAAGGTTTACAAAAGT.......................................................................................................................................................................................................................................................................................................................................................................................2712.00200000020000
....................................................................G--ATTAAC-------------------------------------AAAAAGAGTTTACT...........................................................................................................................................................................................................................................................................................................2112.00200000020000
.....................................................................................................................................AGTTGAAAA-------------------------------CAC----TTGTGC--TTTTGGT........................................................................................................................................................................................................................................2511.00100010000000
............................................ACAAAAGTAAATAGCTCTCGTTTT.......................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.....................................................AATAGCTCTCGTTTTG--ATTAAC-------------------------------------A........................................................................................................................................................................................................................................................................................................................2311.00100000010000
.....................................................................................................................................................................................................................................................................................A--TTGA-GTAATTTCTAACGCGTTTTCC-----------..............................................................................................................2611.00101000000000
.................................................................TTTG--ATTAAC-------------------------------------AAAAAGAGTTTAC............................................................................................................................................................................................................................................................................................................2311.00101000000000
..................................................GTAAATAGCTCTCGTTTTG--....................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................TGCCACC--AAAA-----------TTTCGT------TCTGTT........................2311.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................CGT------TCTGTTAACGTTTCTC-------C......2011.00100100000000
........................................................AGCTCTCGTTTTG--ATTAAC-------------------------------------AAAAAGA..................................................................................................................................................................................................................................................................................................................2611.00100010000000
....................................................................................................................AAAGAGTTTACTT-TTAAGTT..................................................................................................................................................................................................................................................................................................2011.00100000010000
...............................................................................................................................................................................................................................................................................................................................ACTCCATC------------TCT-----C--TTCCT---ATTTGCCACC--A........................................................2811.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................CACC--AAAA-----------TTTCGT------TCTGTTAAC.....................2311.00110000000000
....ATCCAGGACTCTGGCTTCGATGA................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
................................................................................................................................................................................................................................................................................................ATTTCTAACGCGTTTTCC-----------GTACT.........................................................................................................2311.00100000010000
...........................CATGACTGAGAAGGTTTACAAAAGTA......................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
...............................................................................................................................................................................................................................................................................................AATTTCTAACGCGTTTTCC-----------..............................................................................................................1911.00100100000000
..............................................................................................................................................................................................................................................................................................................TTCC-----------GTACTCCATC------------TCT-----C--TTCCT---.....................................................................2311.00100010000000
..................................................GTAAATAGCTCTCGTTTTG--AT..................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
...........................CATGACTGAGAAGGTTTACAAA..........................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
....................................................AAATAGCTCTCGTTTTG--ATTAAC-------------------------------------AA.......................................................................................................................................................................................................................................................................................................................2511.00101000000000
...................................................................TG--ATTAAC-------------------------------------AAAAAGAGTTTACTT-T........................................................................................................................................................................................................................................................................................................2411.00100000010000
.................................................................................................................................................................................................GTTTC-AAT-----CAC----ATTGGCCA-AAA---------------CTT.......................................................................................................................................................................................2511.00100100000000
................................................................................................................................................................................................................................................................................................................................................................CCT---ATTTGCCACC--AAAA-----------TTTCGT------TCTGT.........................2811.00100100000000
.....................CGATGACATGACTGAGAAGGTT................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
......................................................................................................................................GTTGAAAA-------------------------------CAC----TTGTGC--C..............................................................................................................................................................................................................................................1811.00100100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GT------TCTGTTAACGTTTCTC-------CC-----2011.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................AA-----------TTTCGT------TCTGTTAACGTTTCTC-------CC-----2611.00100100000000
.........GGACTCTGGCTTCGATGAC...............................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
.....................CGATGACATGACTGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000
...........................................................................................................................................................................................................................................................................................................................................................................CCACC--AAAA-----------TTTCGT------TCTGTT........................2111.00101000000000
.....................CGATGACATGACTGAGAAGGTTTACAAA..........................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
..........................................TTACAAAAGTAAATAGCTCTCGT..........................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
...........................................................................AC-------------------------------------AAAAAGAGTTTACTT-TTAAGTTG.................................................................................................................................................................................................................................................................................................2511.00101000000000
..................................GAGAAGGTTTACAAAAGTAAATAGCT...............................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
....................................................AAATAGCTCTCGTTTTG--ATTAAC-------------------------------------.........................................................................................................................................................................................................................................................................................................................2311.00101000000000
...................................................................................................................................................................................................................................................................................TAA--TTGA-GTAATTTCTAACGCGTT.............................................................................................................................2411.00101000000000
..................................................................................................................................................................................................................................................................................ATAA--TTGA-GTAATTTCTAACGCGTT.............................................................................................................................2511.00100100000000
..ACATCCAGGACTCTGGCTTCGATGACA..............................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000
...........................................................................................................................................................................................................................................................................................................................................................C--TTCCT---ATTTGCCACC--AAA......................................................1911.00101000000000
......................................................................................................................AGAGTTTACTT-TTAAGTTGAAAA-------------------------------C.............................................................................................................................................................................................................................................................2411.00100000010000
......................GATGACATGACTGAGAAGGTT................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
........................TGACATGACTGAGAAGGTTT...............................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
............CTCTGGCTTCGATGACATGACTG........................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
......................GATGACATGACTGAGAAGGT.................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000
......................GATGACATGACTGAGAAGGTTT...............................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
...................TTCGATGACATGACTGAGAAGGT.................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.........................GACATGACTGAGAAGGTTT...............................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000
.................................TGAGAAGGTTTACAAAAGTAA.....................................................................................................................................................................................................................................................................................................................................................................................2111.00100000100000
.................................................................TTTG--ATTAAC-------------------------------------AAAAAGAGTTTACT...........................................................................................................................................................................................................................................................................................................2411.00100000010000
..............................................................................................................................................................................................TTGGTTTC-AAT-----CAC----ATTGGCC..............................................................................................................................................................................................................2111.00100100000000
...................................................................TG--ATTAAC-------------------------------------AAAAAGAGTTTACT...........................................................................................................................................................................................................................................................................................................2211.00100000010000
droEre2
CAACATCCAGGACTCTGGCTTCGATGACATGACTGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAAA-------------------------------CAC----TTGTGC--TTTTGGTTTC-AAT-----CAC----ATTGGCCA-AAA---------------CTTAGACA----------------TAGCCTTT-ATAA--TTGA-GTAATTTCTAACGCGTTTTCC-----------GTACTCCATC------------TCT-----CTCTTCCT---ATTTGCCAAC--AAAA-----------TTTCGT------TCTGTTAACGTTTCTC-------CC-----SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................TGCCAAC--AAAA-----------TTTCGT------TCTGTTAACGT...................28120.002000000020
......................GATGACATGACTGAGAAGGT.................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000020
..........................................TTACAAAAGTAAATAGCTCTCGTTT........................................................................................................................................................................................................................................................................................................................................................................2512.0020000002
.........................GACATGACTGAGAAGGTTT...............................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
....................................................AAATAGCTCTCGTTTTG--ATTAAC-------------------------------------AA.......................................................................................................................................................................................................................................................................................................................2511.0010001000
....................................................................G--ATTAAC-------------------------------------AAAAAGAGTTTACT...........................................................................................................................................................................................................................................................................................................2111.0010001000
....................TCGATGACATGACTGAGAAGG..................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
.....................................................................................................................AAGAGTTTACTT-TTAAGTTGA................................................................................................................................................................................................................................................................................................2111.0010000100
............................ATGACTGAGAAGGTTTACAAAAGT.......................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
CAACATCCAGGACTCTGGCTTC.....................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000
.............................................................................................................................................................................................................................................................................................................TTTCC-----------GTACTCCATC------------TCT-----CTCTTC..........................................................................2411.0010100000
...............TGGCTTCGATGACATGACTGAGAAGGT.................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
..........................ACATGACTGAGAAGGTTTA..............................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
.....................................................................................................................................................................................................................................................GACA----------------TAGCCTTT-ATAA--TTGA-GTA...........................................................................................................................................2311.0010100000
..................................GAGAAGGTTTACAAAAGTA......................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
.....TCCAGGACTCTGGCTTCGATGACA..............................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
........................................................................................................................................................................................................................................................A----------------TAGCCTTT-ATAA--TTGA-GTAAT.........................................................................................................................................2211.0010000010
....................................................AAATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAA......................................................................................................................................................................................................................................................................................................................2611.0010000100
.........................GACATGACTGAGAAGGTTTACAAAA.........................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
.......................................................................................................................................................................................................................................................CA----------------TAGCCTTT-ATAA--TTGA-GT............................................................................................................................................2011.0010000010
....................................................AAATAGCTCTCGTTTTG--ATTAAC-------------------------------------.........................................................................................................................................................................................................................................................................................................................2311.0011000000
......................................................................................................................AGAGTTTACTT-TTAAGTTGAA...............................................................................................................................................................................................................................................................................................2111.0010001000
.....................................................AATAGCTCTCGTTTTG--ATTAAC-------------------------------------AAAA.....................................................................................................................................................................................................................................................................................................................2611.0010100000
......................................................................................................................................................................................................................................................................................................................................C------------TCT-----CTCTTCCT---ATTTGCCAAC--AAAA-----------T.........................................2711.0011000000
......................................................ATAGCTCTCGTTTTG--ATTAA...............................................................................................................................................................................................................................................................................................................................................................2011.0010100000
.....................CGATGACATGACTGAGAAGGT.................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
.........................GACATGACTGAGAAGGTTTACAAAAGT.......................................................................................................................................................................................................................................................................................................................................................................................2711.0010000010
........................TGACATGACTGAGAAGGT.................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001000
.......................................GGTTTACAAAAGTAAATAGCTCTCGT..........................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
...............................................................................................................................................................................................................................................................................................AATTTCTAACGCGTTTTCC-----------..............................................................................................................1911.0010100000
CAACATCCAGGACTCTGGCTT......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
...........................................TACAAAAGTAAATAGCTCTCGTTT........................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
..................................GAGAAGGTTTACAAAAGT.......................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100

Generated: 05/16/2015 at 09:00 PM