ID:

dvi_6473

 Coordinate:

scaffold_12875:12452344-12452408 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\GJ21925-cds]; exon [dvir_GLEANR_7247:2]; CDS [Dvir\GJ21925-cds]; exon [dvir_GLEANR_7247:1]; intron [Dvir\GJ21925-in]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------##################################################
AATAGCTCTTCTCGTCATTCTCAGTCTTAGTGCTCTCATTACGGGCGAGCGTAAGTGTAGATTACGGAAAAGTGTCAAATACGCTGATTACCTGAGCACTTTTATTGTCTTATAGGCATTGTCAATTGCTATTGGGGCACGTGGGCGAATTACCGGAGTGGCAAT
**************************************************..((((((...(((.((((.(((((.....)))))..)).)))))))))))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060664
9_males_carcasses_total
 SRR060665
9_females_carcasses_total
 V116
male body		 SRR060668
160x9_males_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060669
160x9_females_carcasses_total
 M047
female body
 SRR060666
160_males_carcasses_total
 M061
embryo
 SRR1106729
mixed whole adult body
 V047
embryo
 M027
male body		 SRR060679
140x9_testes_total
 SRR060678
9x140_testes_total
 SRR1106730
embryo_16-30h
 SRR060682
9x140_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 V053
head
 GSM1528803
follicle cells
..................................................................................................................................................GAATTACCGGAGTGGCAAT 19 0 1 14.00 14 5 5 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
AATAGCTCTTCTCGTCATTCTGA.............................................................................................................................................. 23 1 1 12.00 12 7 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................ACGTGGGCGAATTACCGGAGT...... 21 0 1 10.00 10 2 3 1 0 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0
.ATAGCTCTTCTCGTCATTCTGA.............................................................................................................................................. 22 1 1 9.00 9 7 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................TGCTATTGGGGCACGTGGGC................... 20 0 1 7.00 7 0 1 2 1 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...AGCTCTTCTCGTCATTCTGA.............................................................................................................................................. 20 1 1 7.00 7 2 4 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................ACGTGGGCGAATTACCGGA........ 19 0 1 7.00 7 0 1 4 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................ATTCTCAGTCTTAGTGCTCTC................................................................................................................................ 21 0 1 7.00 7 0 0 2 1 0 1 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................ATTGGGGCACGTGGGCGAAT............... 20 0 1 7.00 7 2 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................GTCTCAGTGCTCTCATTACGGGCGA..................................................................................................................... 25 1 1 7.00 7 1 2 0 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................GTCTCAGTGCTCTCATTACGGGCGAG.................................................................................................................... 26 1 1 7.00 7 3 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...AGCTCTTCTCGTCATTCTG............................................................................................................................................... 19 1 1 6.00 6 2 3 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................AATTGCTATTGGGGCACGTGGGC................... 23 0 1 6.00 6 0 1 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................ACGTGGGCGAATTACCGGAGTGGC... 24 0 1 5.00 5 0 0 3 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................GTCTTAGTGCTCTCATTACGGGCGA..................................................................................................................... 25 0 1 5.00 5 0 0 3 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.ATAGCTCTTCTCGTCATTCTG............................................................................................................................................... 21 1 1 5.00 5 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................ACGTGGGCGAATTACCGGAGTGGCAAT 27 0 1 5.00 5 3 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................CTCAGTCTTAGTGCTCTCATTACGGGC....................................................................................................................... 27 0 1 4.00 4 0 0 0 0 0 0 0 0 2 0 0 0 1 1 0 0 0 0 0 0 0
....GCTCTTCTCGTCATTCTGA.............................................................................................................................................. 19 1 1 4.00 4 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GCACGTGGGCGAATTACCGGAGTGGC... 26 0 1 3.00 3 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................AGTGCTCTCATTACGGGCGA..................................................................................................................... 20 0 1 3.00 3 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CTCAGTGCTCTCATTACGGGCGA..................................................................................................................... 23 1 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................GTGGGCGAATTACCGGAGT...... 19 0 1 3.00 3 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................GTCAATTGCTATTGGGGCACGT....................... 22 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
AATAGCTCTTCTCGTCATTCTCAGT............................................................................................................................................ 25 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................GGCACGTGGGCGAATTACCGGAGTGGC... 27 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................TGCTATTGGGGCACGTGGGCGA................. 22 0 1 3.00 3 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................ATTGGGGCACGTGGGCGAATT.............. 21 0 1 3.00 3 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................ATTGGGGCACGTGGGCGA................. 18 0 1 3.00 3 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................GTCTCAGTGCTCTCATTACG.......................................................................................................................... 20 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................CACGTGGGCGAATTACCGGAGTGGC... 25 0 1 3.00 3 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
AATAGCTCTTCTCGTCATT.................................................................................................................................................. 19 0 1 3.00 3 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GCTATTGGGGCACGTGGGCGA................. 21 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................GTCAATTGCTATTGGGGCACGTGGGC................... 26 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................GTCAATTGCTATTGGGGCACGTG...................... 23 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CGAATTACCGGAGTGGCAAT 20 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................GGCACGTGGGCGAATTACC........... 19 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................ATTGGGGCACGTGGGCGAATTACCGGA........ 27 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CGTGGGCGAATTACCGGA........ 18 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................ATTCTCAGTCTTAGTGCTCTCAT.............................................................................................................................. 23 0 1 2.00 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GCACGTGGGCGAATTACCGGA........ 21 0 1 2.00 2 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................TCTGAGTCTCAGTGCTCTCAT.............................................................................................................................. 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GCACGTGGGCGAATTACCGGAGT...... 23 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GGGCGAATTACCGGAGTG..... 18 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................AATTGCTATTGGGGCACGTGGG.................... 22 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GCTATTGGGGCACGTGGGC................... 19 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................GTCTCAGTGCTCTCATTACGGGCGAGC................................................................................................................... 27 1 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................ACGTGGGCGAATTACCGGAGTG..... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.ATAGCTCTTCTCGTCATTC................................................................................................................................................. 19 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................GTGCTCTCATTACGGGCGA..................................................................................................................... 19 0 1 2.00 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................GTGGGCGAATTACCGGAGTGGCAAT 25 0 1 2.00 2 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................ATTGCTATTGGGGCACGTG...................... 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................TGCTATTGGGGCACGTGGGCGAA................ 23 0 1 2.00 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CTCAGTGCTCTCATTACGGGCGAGC................................................................................................................... 25 1 1 2.00 2 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................GTGCTCTCATTACGGGCGAGCGC................................................................................................................. 23 1 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................AATTGCTATTGGGGCACGTGGGCG.................. 24 0 1 2.00 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................GTCTCAGTGCTCTCATTACGGGC....................................................................................................................... 23 1 1 2.00 2 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................ATTGCTATTGGGGCACGTGGGC................... 22 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TGTCAATTGCTATTGGGGCACGTGGGC................... 27 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................TCTCAGTCTTAGTGCTCTCATTACG.......................................................................................................................... 25 0 1 2.00 2 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................CACGTGGGCGAATTACCGGAGTGGCA.. 26 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...AGCTCTTCTCGTCATTCTCA.............................................................................................................................................. 20 0 1 2.00 2 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................AGTCTTAGTGCTCTCATTACGGGC....................................................................................................................... 24 0 1 2.00 2 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
...........................CAGTGCTCTCATTACGGGC....................................................................................................................... 19 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................AGTGCTCTCATTACGGGCGAGCGCATT.............................................................................................................. 27 3 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
AATAGCTCTTCTCGTCATTCT................................................................................................................................................ 21 0 1 2.00 2 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GCTATTGGGGCACGTGGGCG.................. 20 0 1 2.00 2 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................GCTCTCATTACGGGCGAGC................................................................................................................... 19 0 1 2.00 2 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GGGCGAATTACCGGAGTGGCAAT 23 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................CTCAGTCTCAGTGCTCTCATTACGGGC....................................................................................................................... 27 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0
AATAGCTCTTCTCGTCATTCTG............................................................................................................................................... 22 1 1 2.00 2 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................GCTCTCATTACGGGCGAGCGC................................................................................................................. 21 1 1 2.00 2 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......CTTCTCGTCATTCTCAGTCT.......................................................................................................................................... 20 0 1 2.00 2 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................ATTCTCAGTCTTAGTGCTCT................................................................................................................................. 20 0 1 2.00 2 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......CTTCTCGTCATTCTGAGTC........................................................................................................................................... 19 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....CTCTTCTCGTCATTCTGAGT............................................................................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TTGCTATTGGGGCACGTGGGC................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................ATTGGGCACGTGGGCGAATTACCGGA........ 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................GTCAATTGCTATTGGGGCACGTGG..................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................GGGGCACGTGGGCGAATTACC........... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................ATTCTGAGTCTCAGTGCTCTCAT.............................................................................................................................. 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................TCAGTCTTAGTGCTCTCATTACGGGC....................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
AATAGCTCTTCTCGTCATTCTCA.............................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TCAATTGCTATTGGGGCACGTGGGC................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................CTCAGTCTTAGTGCTCTCATTACGGTC....................................................................................................................... 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................AGTCTCAGTGCTCTCATTACGGGCGAGCG.................................................................................................................. 29 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................ACGTGGGCGAATTACCGGAGTGG.... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TTGCTATTGGGGCACGTGGGCGAA................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................TGCTATTGGGGCACGTGGGCGAAT............... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CAATTGCTATTGGGGCACGTGGGCGAAT............... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................GCAAAGAGTCAAATAAGCTGATT............................................................................ 23 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GCACGTGGGCGAATTACCGGAGTGGCAAT 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................GCGCATTGTCAATTGCTATTGGGGCA.......................... 26 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................GCTCTCATTACGGGCGAGCGCAT............................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................GTCTCAGTGCTCTCATTACGGG........................................................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................GGCGAATTACCGGAGTGGCAAT 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATTGTCAATTGCTATTGGGGCACGTGG..................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................TTCTCAGTCTTAGTGCTCTCATT............................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................GGCACGTGGGCGAATTACCGGAGTG..... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............CATTCTGAGTCTCAGTGCTCTCA............................................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................CGCAGTCTTAGTGCTCTCATTACGGGC....................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....GCTCTTCTCGTCATTCTCAGTCTTAGTG..................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................ATTGGGGCACGTGGGCGAATTAC............ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................CACGTGGGCGAATTACCGGAGT...... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................CTCATTACGGGCGAGCGCATT.............................................................................................................. 21 3 3 1.00 3 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CTATTGGGGCACGTGGGCGACTT.............. 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CTTAGTGCTCTCATTACGGGCG...................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................ATTGATATTGGGGCACGTGGGC................... 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................ACGTGGGCGAATTACCGGAG....... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................ATTGCTATTGGGGCACGTGGGCGA................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...AGCTCTTCTCGTCATTCTC............................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................ATTGCTATTGGGGCACGTGGG.................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................TGCTCTTGGGGCACGTGGGC................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TGTCAATTGCTATTGGGGCACGTGGG.................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................GTATTAGTGCTCCCATTACGGGC....................................................................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TTACCGGAGTGGCAA. 15 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................ATTCTCAGTCTTAGTGCTCTCATTACG.......................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................CAGTCTTAGTGCTCTCATTAC........................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...AGCTCCTCTCGTCATTCTGA.............................................................................................................................................. 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................GTCTTAGTGCTCTCATTACGGGCGC..................................................................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................CTCAGTCTTAGTGCTCTCATTACGGGCA...................................................................................................................... 28 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CGTGGGCGAATTACCGGAGT...... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................GTCTCAGTGCTCTCATTACGGGCGC..................................................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....GCTCTTCTCGTCATTCTGAGTC........................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................AATTGCTATTGGGGCACGTG...................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................AGTCTTAGTGCTCTCATTACGGGCGA..................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................TCTCAGTGCTCTCATTACG.......................................................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................ACGTGGGCGAATTATCGGAGT...... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................GCGAATTACCGGAGTGGCAAT 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................AATTGCTATTGGGGCACGTGGGGGAA................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......TCTTCTCGTCATTCTGAGTCTCAGTGCT................................................................................................................................... 28 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................GTGGGCGAATTACCGGAGTGGC... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................GTCAATTGCTATTGGGGCACGTGGG.................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................GTCTCAGTGCTCTCATTACGGGCAAGC................................................................................................................... 27 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................ATTGCTATTGGGGCACGTGGGCG.................. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................GTGCTCTCATTACTGGCGAGCGC................................................................................................................. 23 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................CTCAGTCTTAGCGCTCTCATTACGGGC....................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................GTCTCAGTGCTCTCATTACGAGCGA..................................................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................CACGTGGGCGAATTACCGGAGTGGCAAT 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................AGTCTTAGTGCTCTCATTACAGGCGA..................................................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................GGCACGTGGGCGAATTACCGGAGT...... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................AGTCTCAGTGCTCTCATTACGGGC....................................................................................................................... 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CTCAGTGCTCTCATTACGAGCGA..................................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................ATTCTCAGTCTCAGTGCTCTCATT............................................................................................................................. 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................ATTGCTATTGGGGCACGTGGGCGAAT............... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
AATAGCTCTTCTCGTCATTCTGAA............................................................................................................................................. 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CTTAGTGCTCTCATTACGGGCGAGC................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................ATTGCTATTGGGGCACGT....................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TTGGGGCACGTGGGCGAAT............... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................ACGTGGGCGAATTACCGGAGGGGCA.. 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................AGTCTCAGTGCTCTCATTAC........................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................CTCAGTCTTAGTGCTCTCAT.............................................................................................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............CATTCTGAGTCTCAGTGCTCT................................................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................TGCTATTGGGGCACGTGGGCGAATTACC........... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATTGTCAATTGCTATTGGGGCACGTG...................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........TTCTCGTCATTCTCAGTCTTAGTGCTCTC................................................................................................................................ 29 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GCACGTGGGCGAATTACC........... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................GTCTTAGTGCTCTCATTACG.......................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............CATTCTCAGTCTTAGTGCTCTCATTACT.......................................................................................................................... 28 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................TCTCAGTCTTAGTGCTCTCATTACGGGC....................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................TCTCAGTGCTCTCATTACGGGCGA..................................................................................................................... 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CAATTGCTATTGGGGCACGTGGG.................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CAATTGCTATTGGGGCACGTGGGC................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................ATTGGGGCACGTGGGCGAA................ 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TATTGGGGCACGTGGGCGAATTAC............ 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................GTCTTAGTGCTCTCATTACGGGCGAGC................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CGTGGGCGAATTACCGGAGTG..... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
CATAGCTCTTCTCGTCATTCTGA.............................................................................................................................................. 23 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................AGTGCTCTCATTACGGGCG...................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GCACGTGGGCGAATTACCGGAGTG..... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................GTCAAATGCGCTGATTAC.......................................................................... 18 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..TAGCTCTTCTCGTCATTCTGA.............................................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TGTTAATTGCTATTGGGGCACGTGGGC................... 27 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CAATTGCTATTGGGGCACGTG...................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................CTGCTCTCATTACGGGCGAGCGC................................................................................................................. 23 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................GCGCATTGTCAATTGCTATTGGGGCAC......................... 27 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................AGTCTCAGTGCTCTCATTACGGGCGAGC................................................................................................................... 28 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......CTTCTCGTCATTCTGAGTCTCAGTGCTCT................................................................................................................................. 29 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CAATTGCTATTGGGGCACGTGG..................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................GTCTTAGTGCTCTCATTAC........................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GCTATTGGGGCACGTGGG.................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GCTATTGGGGCACGTGGGCGAATTACC........... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...AGCTCTTCTCGTCATTCTGAGT............................................................................................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................CACGTGGGCGAATTACCGGA........ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................GTCTCAGTGCTCTCATTACGGGCGAGCGC................................................................................................................. 29 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................CAGTCTTAGTGCTCTCATTACGGGC....................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................CTCAGTCTTAGTGCTCTCATTACG.......................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......TCTTCTCGTCATTCTCAGTCTTA........................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................CAGTGCTCTCATTACGGGCGAG.................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................GTCTCAGTGCTCTCATTAC........................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
AATAGCTCTTCTCGTCATTCTC............................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................GTCTTAGTGCTCTCATTACGGGC....................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................CTCAGTGCTCTCATTACGGGCG...................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CTTAGTGCTCTCATTACGGGCGAGCGC................................................................................................................. 27 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................AATTGCTATTGGGGCACGTGGGCGA................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................ATTCTCAGTCTTAGTGCCCTC................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................ACGTGGGCGAATTACCGGAA....... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................CTCAGTCTCAGTGCTCTCATTACGGGCGAGC................................................................................................................... 31 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................TCTCAGTCTTAGTGCTCTCAT.............................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CTTAGTGCTCTCATTACAGGC....................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................GTCAAATGCGCTGATTACG......................................................................... 19 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................ATTGGGGCACGTGGTCGA................. 18 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...AGCTCTTCTCGTCATTCTGC.............................................................................................................................................. 20 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AATACGTCGATTACCTGA...................................................................... 18 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...............CATTCTGAGTCTCAGTGCT................................................................................................................................... 19 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................GGGGAATTACCGGCGTGGC... 19 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................CATTACGGGCGAGCGCAAT.............................................................................................................. 19 2 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AATACGCTGCTTACCGGA...................................................................... 18 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................GTTCTCTGATCACGGGCGA..................................................................................................................... 19 3 9 0.11 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................CGGGCGAGCGCAAGTGTTGC........................................................................................................ 20 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................................TAAAATACGCTGATT............................................................................ 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TTATCGAGAAGAGCAGTAAGAGTCAGAATCACGAGAGTAATGCCCGCTCGCATTCACATCTAATGCCTTTTCACAGTTTATGCGACTAATGGACTCGTGAAAATAACAGAATATCCGTAACAGTTAACGATAACCCCGTGCACCCGCTTAATGGCCTCACCGTTA
**************************************************..((((((...(((.((((.(((((.....)))))..)).)))))))))))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 V116
male body		 SRR060685
9xArg_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 SRR1106714
embryo_2-4h
................TAGGCGTCAGAATGACGAGAGT............................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0
......................................................................................TAAGGGACTCGTGTAAATA............................................................ 19 2 4 0.25 1 0 1 0 0 0
............................................................TAATGCGTTTTCACCGTTTATT................................................................................... 22 3 6 0.17 1 0 0 1 0 0
.....................................................................................................................................GCCCTTGCACCCCCTTAA.............. 18 3 20 0.05 1 0 0 0 0 1
...TCGAAAAGAGCAGTAAATG............................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:12452294-12452458 + dvi_6473 AATAGCTCTTCTCGTCATTCTCAGTCTTAGTGCTCTCATTACGGGCGAGCGTAAGTGTA-G--ATTACGGA----------------------A---AAGT-------G-----------------------TCAAATACGCTGATTACCT------------------------GAGCAC----------------TTTTAT-------TG--TCT--------TATAGGCATTGTCAATTGCTATTGGGGCACGTGGGCGAATTACCGGAGTGGCAAT
droMoj3 scaffold_6496:14414128-14414296 - AATAGCTCTGCTGGTCGTTCTTGGCCTGAGTGCTCTCGTTTCGGGCGAACGTAAGTGAA-A--AGTGGGCG----TGG---C-------GTAGGCCG---A-------GCTAATCTGTCATG----------------------------------------------------ATCCCA-----------------TCT-----------CCG----TTTCTATTGAAGGCATTGTCAACTGCTACTGGGGCACCTGGGCGAACTATCGGAGTGGCAAT
droGri2 scaffold_15245:7909004-7909156 - GTTAGCCCTGCTCGTTATTCTCGGTCTGAGTGCACTGATTAGTGGAGAGCGTAAGTGTA-ACAATTAT----------------TGGA-----A---AAACA-----AAGA---------------------A--------------------------------ATTA----------G-----------------TCTAATTTCC-----------------TTACAGGCATCGTTAACTGCTATTGGGGCACATGGTCAAATTATCGGAGTGGCGAT
droWil2 scf2_1100000004954:4017836-4018002 - GTTAGCCATACTGATAGCCCTTTGTCTGGGCCAGGCCATCGTGGCCGAACGTAAGTAAA-T--CGAA-AAGAA--------------------------------------------------------ATG------------ACCACATG-AGCTCTCAATG----------AACA-----AAAACTGT-------------CTCCGAT------T------ATCTAGGCATTGTGAACTGCTACTGGGGCACTTGGGCCAACTATCGCAGCGGCAAT
dp5 3:17589916-17590070 - ATTGACACTACTCGTGGCCCTCTGCCTGAGCCAGGTGATCGGTGCTGAACGTGAGTGCA-A--CTAT---------------------------------------------------------AAGTCGTGT-------------------------------------------------------TGTATCCGATAATATC--C----TTT----TAACAAATCCAGGCATCGTGAACTGCTATTGGGGCACGTGGGCGAACTACCGCAGCGGCAAT
droPer2 scaffold_31:201548-201702 + ATTGACACTACTCGTGGCCCTCTGCCTGAGCCAGGTGATCGGTGCTGAACGTGAGTGCA-A--CTAT---------------------------------------------------------AAGTCGTGT-------------------------------------------------------TGTATCCGATAATATC--C----TTT----TAACAAATCCAGGCATCGTGAACTGCTATTGGGGCACGTGGGCGAACTACCGCAGCGGCAAT
droAna3 scaffold_13266:7010147-7010304 + ATTAGCTATTCTTGCAGTCCTCTGCCTGAGCCAGGCGATCGTTGCTGAGCGTGAGTGTA-A--AAG--GA------------TCCAGGTCCAGA-------------AGGG---------------------A--------------------------------GTCA-----------CTTAAGTT----------TTCA-------ATC-----T------CTACAGGCATCGTCAACTGCTACTGGGGCACCTGGGCTAATTACCGCAGCGGCAAT
droBip1 scf7180000396423:548300-548456 + ATTAGCTGTTCTTGCAGTCCTCTGCCTGAGCCAGGCGATCGTTGCCGAGCGTGAGTCCA-A--AGG--GA------------T------------------------------------------------------------------ATC-AGATCTCAGGGAGT-A-----------CTAAAGGT----------TGTA-------ACC--CCC--------TATAGGCATCGTCAACTGCTACTGGGGCACCTGGGCCAACTACCGCAGCGGCAAT
droKik1 scf7180000302476:2075516-2075680 - ATTGGCATTACTCGCAGTCCTCTGCCTGAGCCAGGTGATCGGTGCTGAGCGTGAGTATA-G--CCCTGGAT----CGG---C-------CTGGA---AAGC-------ATTATCCTGA-------------------------------------------------CA-----------------------------CTGGATTTCCGACCA----C------TTCCAGGCATCGTCAACTGCTATTGGGGCACCTGGGCCAACTACCGCAGCGGCGAT
droFic1 scf7180000454044:400700-400862 - ATTGGCACTACTCGCAGTCCTTTGCCTGAGCCAGGTGATCGGTGCTGAACGTGAGTATT-A--TCCTAGGG----------------------A---AAACACCTGCAAGA---------------------A--------------------------------GTTA---------TA-----------------TATTTATCCAAAATAA----A------TATTAGGCATCGTGAACTGCTACTGGGGCACCTGGGCCAATTACCGCAGCGGCAAT
droEle1 scf7180000491240:70989-71043 + ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGGCATCGTCAACTGTTACTGGGGCACCTGGGCCAACTACCGCAGCGGCAGT
droRho1 scf7180000780003:3301-3454 + TTTGGCACTACTCGCAGTCCTCTGCCTGAGCCAGGTGATCGGTGCTGAGCGTAAGTATTTG--GC-TA----------T-----TGG------G------A-------GGTAATCTTATGCTATAACTCGTG-----------------------------------------------------------------------------GA------T------CTCCAGGCATCGTCAACTGCTACTGGGGCACCTGGGCCAACTACAACAGCGGCAAT
droBia1 scf7180000301754:549594-549764 + TTTGGCACTACTCGCAGTCCTCTGCCTTGGCCAGGTGATCGGTGCTGAGCGTGAGTATG-A--CTTTGCGG-A--------------------C---AATC-------C--------------------------------------ACTTGGAG----------GTTATAGTAATCCCA-----------------TGTTTGTCCCTGGACA----A------CTCCAGGCATCGTCAACTGCTACTGGGGCACCTGGGCCAACTACCGCAGCGGCAAC
droTak1 scf7180000415391:78138-78308 + ATTGGCACTACTCGCAGTCCTATGCCTTAGCCAGGCGATCGTTGCTGAACGTGAGTATT-C--AATGGGG-----TGG---T-------G--AA---AATC-------A--------------------------------------TTACAGAG----------GTAATCGGATAACCAC----------------TTACAT--CCT-------------CGATTCCAGGCATCGTGAACTGCTACTGGGGCACCTGGGCCAACTACCGCAGCGGCCAG
droEug1 scf7180000409474:994868-995022 + ATTGACACTACTCGCAGTCCTCTGCCTTAGCCAATTGATCGGTGCTGAACGTAAGTATTTG--GC-TA----------T-----AAA------G------A-------AGAG--------------------A---------------------------------T--------TCCTA-----------------TCTTTATTCCTGGACA----T------CATAAGGCATCGTCAACTGCTACTGGGGAACCTGGGCCAACTACCGCACTGGCAAT
dm3 chr2R:16956595-16956766 - ATTGGCACTACTCGCTGTCCTCTGCCTTAGCCAGGTTATCGGTGCTGAACGTAAGTCTA-A--TCTACGCGAATTTGG---T-------GTTGGCTTAAAA-------G--------------------------------------------------------CTA-------ATCGA-----------------TCTGTATTCCTGATCT----GTT----ATCCAGGCATCGTCAACTGCTACTGGGGCACCTGGGCCAACTACCGCAGCGGCAAT
droSim2 2r:17514306-17514475 - ATTGGCACTACTCGCAGTCCTCTGCCTTAGCCAGGTTATCGGTGCTGAGCGTAAGTCTT-A--TCTGGGCGAATATGA---T-------GTTGGCCTAAAT-------G--------------------------------------------------------TTA-------ATCGA-----------------TCTGTATTCCTGGCAA----A------ATCCAGGCATCGTCAACTGCTACTGGGGCACCTGGGCCAACTACCGCAGCGGCAAC
droSec2 scaffold_9:286379-286548 - ATTGGCACTACTCGCAGTCCTCTGCCTTAGCCAGGTTATCGGTGCTGAACGTAAGTATT-A--TCTGGGTGAATATGA---T-------GTTGGCCTAAAT-------G--------------------------------------------------------TTA-------ATCGA-----------------TCTGTATTCCTGGCAA----A------ATCCAGGCATCGTCAACTGCTACTGGGGCACCTGGGCCAACTACCGCAGCGGCAAC
droYak3 2R:12238819-12238991 + ATTGGCACTACTCGCAGTCCTCTGCCTTAGCCAGGTTATCGGTGCTGAACGTAAGTCCC-A--TCTAGGCGAATTTAATTGT-------GTTGGCTTAATA-------G--------------------------------------------------------TTA-------ATTGA-----------------TCTGTATTCCTGGCAC----A------ATCCAGGCATCGTCAACTGCTACTGGGGCACCTGGGCCAATTACCGCAGCGGCAAT
droEre2 scaffold_4845:11100010-11100179 - ATTGGCACTACTCGCAGTCCTCTGCCTTAGCCAGGTTATCGGTGCTGAACGTAAGTCCT-A--TCTGGGCGGATTTCC---C-------GTTGGCCTAATA-------G--------------------------------------------------------TTA-------ATCCA-----------------TCTTTATTCCTGGAAT----G------ATCCAGGCATCGTCAACTGCTACTGGGGCACCTGGGCCAACTACCGCAGCGGCAAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AATAGCTCTTCTCGTCATTCTCAGTCTTAGTGCTCTCATTACGGGCGAGCGTAAGTGTA-G--ATTACGGA----------------------A---AAGT-------G-----------------------TCAAATACGCTGATTACCT------------------------GAGCAC----------------TTTTAT-------TG--TCT--------TATAGGCATTGTCAATTGCTATTGGGGCACGTGGGCGAATTACCGGAGTGGCAATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................................................................................GAATTACCGGAGTGGCAAT19114.0014000000000000005502000000000000000000000000000000000000000000020
.............................................................................................................................................................................................................................................................ACGTGGGCGAATTACCGGAGT......21110.0010001000000000002300000100000001000000000000000000000000000001010
.................................................................................................................................................................................................................................................TGCTATTGGGGCACGTGGGC...................2017.007000000000000000100110200000000000000000000000000000000000000020
.............................................................................................................................................................................................................................................................ACGTGGGCGAATTACCGGA........1917.007000000000000000100200000000000000000000000000000000000000000040
................ATTCTCAGTCTTAGTGCTCTC...................................................................................................................................................................................................................................................2117.007100100000000000000110100000000000000000000000000000000000000020
.....................................................................................................................................................................................................................................................ATTGGGGCACGTGGGCGAAT...............2017.007000000000000002101110100000000000000000000000000000000000000000
...AGCTCTTCTCGTCATTCTG..................................................................................................................................................................................................................................................................1916.006000000000000002300000100000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................AATTGCTATTGGGGCACGTGGGC...................2316.006000000000000000101100000000000000000000000000000000000000000030
.............................................................................................................................................................................................................................................................ACGTGGGCGAATTACCGGAGTGGC...2415.005000000000000000001000000000000000000000000000000000000000001030
.......................GTCTTAGTGCTCTCATTACGGGCGA........................................................................................................................................................................................................................................2515.005001000000000000000000010000000000000000000000000000000000000030
.ATAGCTCTTCTCGTCATTCTG..................................................................................................................................................................................................................................................................2115.005000000000000004100000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................ACGTGGGCGAATTACCGGAGTGGCAAT2715.005000000000000003000100000000000000000000000000000000000000000010
...................CTCAGTCTTAGTGCTCTCATTACGGGC..........................................................................................................................................................................................................................................2714.004102000000000000000000000000000000000000000000000000000000001000
...........................................................................................................................................................................................................................................................GCACGTGGGCGAATTACCGGAGTGGC...2613.003000000000000000000100010000000000000000000000000000000000000010
............................AGTGCTCTCATTACGGGCGA........................................................................................................................................................................................................................................2013.003000000000000001000010100000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................GTGGGCGAATTACCGGAGT......1913.003000000000000000100100000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................GTCAATTGCTATTGGGGCACGT.......................2213.003000000000000001200000000000000000000000000000000000000000000000
AATAGCTCTTCTCGTCATTCTCAGT...............................................................................................................................................................................................................................................................2513.003000000000000000000000000000000000000000000000000000000000000030
..........................................................................................................................................................................................................................................................GGCACGTGGGCGAATTACCGGAGTGGC...2713.003000000000000000000000000000000000000000000000000000000000000030
.................................................................................................................................................................................................................................................TGCTATTGGGGCACGTGGGCGA.................2213.003000000000000000000000110000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................ATTGGGGCACGTGGGCGAATT..............2113.003000000000000000001000000000000000000000000000000000000000000020
.....................................................................................................................................................................................................................................................ATTGGGGCACGTGGGCGA.................1813.003000000000000000200010000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................CACGTGGGCGAATTACCGGAGTGGC...2513.003001000000000000000000000000000000000000000000000000000000000020
AATAGCTCTTCTCGTCATT.....................................................................................................................................................................................................................................................................1913.003000000000000000100010100000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................GCTATTGGGGCACGTGGGCGA.................2112.002000000000000001001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................GTCAATTGCTATTGGGGCACGTGGGC...................2612.002000000000000000000100000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................GTCAATTGCTATTGGGGCACGTG......................2312.002000000000000001100000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................CGAATTACCGGAGTGGCAAT2012.002000000000000000002000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................GGCACGTGGGCGAATTACC...........1912.002000000000000001100000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................ATTGGGGCACGTGGGCGAATTACCGGA........2712.002000000000000000100100000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................CGTGGGCGAATTACCGGA........1812.002000000000000001100000000000000000000000000000000000000000000000
................ATTCTCAGTCTTAGTGCTCTCAT.................................................................................................................................................................................................................................................2312.002000000000000000001100000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................GCACGTGGGCGAATTACCGGA........2112.002000000000000000100000010000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................GCACGTGGGCGAATTACCGGAGT......2312.002000000000000001000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................GGGCGAATTACCGGAGTG.....1812.002000000000000001001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................AATTGCTATTGGGGCACGTGGG....................2212.002000000000000000100000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................GCTATTGGGGCACGTGGGC...................1912.002000000000000001100000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................ACGTGGGCGAATTACCGGAGTG.....2212.002000000000000002000000000000000000000000000000000000000000000000
.ATAGCTCTTCTCGTCATTC....................................................................................................................................................................................................................................................................1912.002000000000000001100000000000000000000000000000000000000000000000
.............................GTGCTCTCATTACGGGCGA........................................................................................................................................................................................................................................1912.002000000000000000100000100000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................GTGGGCGAATTACCGGAGTGGCAAT2512.002001000000000000010000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................ATTGCTATTGGGGCACGTG......................1912.002000000000000000200000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................TGCTATTGGGGCACGTGGGCGAA................2312.002000000000000000001100000000000000000000000000000000000000000000
.............................GTGCTCTCATTACGGGCGAGCGC....................................................................................................................................................................................................................................2312.002000000000000001000100000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................AATTGCTATTGGGGCACGTGGGCG..................2412.002000000000000000000000110000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................ATTGCTATTGGGGCACGTGGGC...................2212.002000000000000001000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................................................TGTCAATTGCTATTGGGGCACGTGGGC...................2712.002000000000000001000000000000000000000000000000000000000000000010
..................TCTCAGTCTTAGTGCTCTCATTACG.............................................................................................................................................................................................................................................2512.002000000000000000000010010000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................CACGTGGGCGAATTACCGGAGTGGCA..2612.002000000000000001001000000000000000000000000000000000000000000000
...AGCTCTTCTCGTCATTCTCA.................................................................................................................................................................................................................................................................2012.002000000000000000010000000000000000000000000000000000000000000010
......................AGTCTTAGTGCTCTCATTACGGGC..........................................................................................................................................................................................................................................2412.002000100000000000010000000000000000000000000000000000000000000000
AATAGCTCTTCTCGTCATTCT...................................................................................................................................................................................................................................................................2112.002001000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................GCTATTGGGGCACGTGGGCG..................2012.002000000000000000001000010000000000000000000000000000000000000000
...............................GCTCTCATTACGGGCGAGC......................................................................................................................................................................................................................................1912.002001000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................GGGCGAATTACCGGAGTGGCAAT2312.002000000000000000000000000000000000000000000000000000000000000020
AATAGCTCTTCTCGTCATTCTG..................................................................................................................................................................................................................................................................2212.002000000000000000000110000000000000000000000000000000000000000000
...............................GCTCTCATTACGGGCGAGCGC....................................................................................................................................................................................................................................2112.002000000000000000100010000000000000000000000000000000000000000000
.......CTTCTCGTCATTCTCAGTCT.............................................................................................................................................................................................................................................................2012.002001000000000000000000100000000000000000000000000000000000000000
................ATTCTCAGTCTTAGTGCTCT....................................................................................................................................................................................................................................................2012.002000000000000000001010000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................TTGCTATTGGGGCACGTGGGC...................2111.001000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................GTCAATTGCTATTGGGGCACGTGG.....................2411.001000000000000000000000010000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................GGGGCACGTGGGCGAATTACC...........2111.001000000000000000100000000000000000000000000000000000000000000000
....................TCAGTCTTAGTGCTCTCATTACGGGC..........................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000010
AATAGCTCTTCTCGTCATTCTCA.................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................TCAATTGCTATTGGGGCACGTGGGC...................2511.001000000000000000100000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................ACGTGGGCGAATTACCGGAGTGG....2311.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................TTGCTATTGGGGCACGTGGGCGAA................2411.001000000000000000100000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................TGCTATTGGGGCACGTGGGCGAAT...............2411.001000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................CAATTGCTATTGGGGCACGTGGGCGAAT...............2811.001000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................GCACGTGGGCGAATTACCGGAGTGGCAAT2911.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................GGCGAATTACCGGAGTGGCAAT2211.001000000000000000100000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................ATTGTCAATTGCTATTGGGGCACGTGG.....................2711.001000000000000000000000000000000000000000000000000000000000000010
.................TTCTCAGTCTTAGTGCTCTCATT................................................................................................................................................................................................................................................2311.001000000000000000000000100000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................GGCACGTGGGCGAATTACCGGAGTG.....2511.001000000000000000000000000000000000000000000000000000000000000010
....GCTCTTCTCGTCATTCTCAGTCTTAGTG........................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................ATTGGGGCACGTGGGCGAATTAC............2311.001000000000000000100000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................CACGTGGGCGAATTACCGGAGT......2211.001000000000000000100000000000000000000000000000000000000000000000
.........................CTTAGTGCTCTCATTACGGGCG.........................................................................................................................................................................................................................................2211.001000000000000000000000100000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................ACGTGGGCGAATTACCGGAG.......2011.001000000000000000100000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................ATTGCTATTGGGGCACGTGGGCGA.................2411.001000000000000001000000000000000000000000000000000000000000000000
...AGCTCTTCTCGTCATTCTC..................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................ATTGCTATTGGGGCACGTGGG....................2111.001000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................................................TGTCAATTGCTATTGGGGCACGTGGG....................2611.001000000000000000010000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................TTACCGGAGTGGCAA.1511.001000000000000000000000000000000000000000000000000000000000100000
................ATTCTCAGTCTTAGTGCTCTCATTACG.............................................................................................................................................................................................................................................2711.001000000000000000000000010000000000000000000000000000000000000000
.....................CAGTCTTAGTGCTCTCATTAC..............................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
.......................GTCTTAGTGCTCTCATTACGGGCGC........................................................................................................................................................................................................................................2511.001000000000000000000010000000000000000000000000000000000000000000
...................CTCAGTCTTAGTGCTCTCATTACGGGCA.........................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................CGTGGGCGAATTACCGGAGT......2011.001000000000000000010000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................AATTGCTATTGGGGCACGTG......................2011.001000000000000000001000000000000000000000000000000000000000000000
......................AGTCTTAGTGCTCTCATTACGGGCGA........................................................................................................................................................................................................................................2611.001000000000000000000100000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................GCGAATTACCGGAGTGGCAAT2111.001000000000000001000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................GTGGGCGAATTACCGGAGTGGC...2211.001000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................GTCAATTGCTATTGGGGCACGTGGG....................2511.001000000000000001000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................ATTGCTATTGGGGCACGTGGGCG..................2311.001000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................................................................................................CACGTGGGCGAATTACCGGAGTGGCAAT2811.001000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................................................................GGCACGTGGGCGAATTACCGGAGT......2411.001000000000000001000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................ATTGCTATTGGGGCACGTGGGCGAAT...............2611.001000000000000001000000000000000000000000000000000000000000000000
.........................CTTAGTGCTCTCATTACGGGCGAGC......................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................ATTGCTATTGGGGCACGT.......................1811.001000000000000000100000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................TTGGGGCACGTGGGCGAAT...............1911.001001000000000000000000000000000000000000000000000000000000000000
...................CTCAGTCTTAGTGCTCTCAT.................................................................................................................................................................................................................................................2011.001000000000000000000100000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................TGCTATTGGGGCACGTGGGCGAATTACC...........2811.001000000000000000100000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................ATTGTCAATTGCTATTGGGGCACGTG......................2611.001000000000000000000000000000000000000000000000000000000000000010
........TTCTCGTCATTCTCAGTCTTAGTGCTCTC...................................................................................................................................................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................GCACGTGGGCGAATTACC...........1811.001000000000000000001000000000000000000000000000000000000000000000
.......................GTCTTAGTGCTCTCATTACG.............................................................................................................................................................................................................................................2011.001000000000000000000100000000000000000000000000000000000000000000
...............CATTCTCAGTCTTAGTGCTCTCATTACT.............................................................................................................................................................................................................................................2811.001000000000000000001000000000000000000000000000000000000000000000
..................TCTCAGTCTTAGTGCTCTCATTACGGGC..........................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................CAATTGCTATTGGGGCACGTGGG....................2311.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................CAATTGCTATTGGGGCACGTGGGC...................2411.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................ATTGGGGCACGTGGGCGAA................1911.001000000000000000000100000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................TATTGGGGCACGTGGGCGAATTAC............2411.001000000000000000000010000000000000000000000000000000000000000000
.......................GTCTTAGTGCTCTCATTACGGGCGAGC......................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................CGTGGGCGAATTACCGGAGTG.....2111.001000000000000000100000000000000000000000000000000000000000000000
............................AGTGCTCTCATTACGGGCG.........................................................................................................................................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................GCACGTGGGCGAATTACCGGAGTG.....2411.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................CAATTGCTATTGGGGCACGTG......................2111.001000000000000001000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................CAATTGCTATTGGGGCACGTGG.....................2211.001000000000000000100000000000000000000000000000000000000000000000
.......................GTCTTAGTGCTCTCATTAC..............................................................................................................................................................................................................................................1911.001000000000000000000100000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................GCTATTGGGGCACGTGGG....................1811.001000000000000000010000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................GCTATTGGGGCACGTGGGCGAATTACC...........2711.001000000000000000100000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................CACGTGGGCGAATTACCGGA........2011.001000000000000000100000000000000000000000000000000000000000000000
.....................CAGTCTTAGTGCTCTCATTACGGGC..........................................................................................................................................................................................................................................2511.001000000000000000000100000000000000000000000000000000000000000000
...................CTCAGTCTTAGTGCTCTCATTACG.............................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
......TCTTCTCGTCATTCTCAGTCTTA...........................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
AATAGCTCTTCTCGTCATTCTC..................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
.......................GTCTTAGTGCTCTCATTACGGGC..........................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.........................CTTAGTGCTCTCATTACGGGCGAGCGC....................................................................................................................................................................................................................................2711.001000000000000000000000010000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................AATTGCTATTGGGGCACGTGGGCGA.................2511.001000000000000000100000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................ACGTGGGCGAATTACCGGAA.......2011.001000000000000001000000000000000000000000000000000000000000000000
..................TCTCAGTCTTAGTGCTCTCAT.................................................................................................................................................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
...AGCTCTTCTCGTCATTCTGC.................................................................................................................................................................................................................................................................2020.501000000000000000100000000000000000000000000000000000000000000000
droMoj3
AATAGCTCTGCTGGTCGTTCTTGGCCTGAGTGCTCTCGTTTCGGGCGAACGTAAGTGAA-A--AGTGGGCG----TGG---C-------GTAGGCCG---A-------GCTAATCTGTCATG----------------------------------------------------ATCCCA-----------------TCT-----------CCG----TTTCTATTGAAGGCATTGTCAACTGCTACTGGGGCACCTGGGCGAACTATCGGAGTGGCAATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GTTAGCCCTGCTCGTTATTCTCGGTCTGAGTGCACTGATTAGTGGAGAGCGTAAGTGTA-ACAATTAT----------------TGGA-----A---AAACA-----AAGA---------------------A--------------------------------ATTA----------G-----------------TCTAATTTCC-----------------TTACAGGCATCGTTAACTGCTATTGGGGCACATGGTCAAATTATCGGAGTGGCGATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GTTAGCCATACTGATAGCCCTTTGTCTGGGCCAGGCCATCGTGGCCGAACGTAAGTAAA-T--CGAA-AAGAA--------------------------------------------------------ATG------------ACCACATG-AGCTCTCAATG----------AACA-----AAAACTGT-------------CTCCGAT------T------ATCTAGGCATTGTGAACTGCTACTGGGGCACTTGGGCCAACTATCGCAGCGGCAATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................CTTTGTCTGGGCCAGGCCATCGT..............................................................................................................................................................................................................................................2312.00200020
..........................................................................................................................................................................................................................................TGTGAACTGCTACTGGGG............................1812.00201010
........................................................................................................................................................................................................................................ATTGTGAACTGCTACTGGGG............................2011.00100010
.................................................................................................................................................................................................................................................TGCTACTGGGGCACTTGGGCCAACT..............2511.00100010
.............................................................................................................................................................................................................................................GAACTGCTACTGGGGCACTTGGGC...................2411.00100010
...................................................................................................................................................................................................................................................CTACTGGGGCACTTGGGC...................1811.00100010
........................................................................................................................................................................................................................................ATTGTGAACTGCTACTGGG.............................1911.00100010
...............................................................................................................................................................................................................................................ACTGCTACTGGGGCACTTGGGC...................2211.00100010
.............................................................................................................................................................................................................................................................ACTTGGGCCAACTATCGCAGCGGCAAT2711.00100010
.........................................................................................................................................................................................................................................................GGGCACTTGGGCCAACTATCGCAGCGGCA..2911.00100010
.......................................................................................................................................................................................................................................................TGGGGCACTTGGGCCAACTAT............2111.00100010
.............................................................................................................................................................................................................................................................ACTTGGGCCAACTATCGCAGCGGC...2411.00100010
dp5
ATTGACACTACTCGTGGCCCTCTGCCTGAGCCAGGTGATCGGTGCTGAACGTGAGTGCA-A--CTAT---------------------------------------------------------AAGTCGTGT-------------------------------------------------------TGTATCCGATAATATC--C----TTT----TAACAAATCCAGGCATCGTGAACTGCTATTGGGGCACGTGGGCGAACTACCGCAGCGGCAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...GACACTACTCGTGGCCCTCTGC...............................................................................................................................................................................................................................................................2211.0010100000000
.......................................................................................................................................................................................................................................CATCGTGAACTGCTATTGGGGC...........................2211.0010100000000
droPer2
ATTGACACTACTCGTGGCCCTCTGCCTGAGCCAGGTGATCGGTGCTGAACGTGAGTGCA-A--CTAT---------------------------------------------------------AAGTCGTGT-------------------------------------------------------TGTATCCGATAATATC--C----TTT----TAACAAATCCAGGCATCGTGAACTGCTATTGGGGCACGTGGGCGAACTACCGCAGCGGCAATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................GCCTGAGCCAGGTGATCGGT.............................................................................................................................................................................................................................................2013.003210000
......ACTACTCGTGGCCCTCTGCCTGAGCCA.......................................................................................................................................................................................................................................................2711.001010000
..................................................................................................................................................................................................................................................GCTATTGGGGCACGTGGGC...................1911.001010000
.............................................................................................................................................................................................................................................................ACGTGGGCGAACTACCGCAGCGGC...2411.001010000
..................................................................................................................................................................................................................................................GCTATTGGGGCACGTGGG....................1811.001001000
....ACACTACTCGTGGCCCTCTG................................................................................................................................................................................................................................................................2011.001001000
...........................................................................................................................................................................................................................................................GCACGTGGGCGAACTACCGCAGCGGC...2611.001010000
.....................................................................................................................................................................................................................................................ATTGGGGCACGTGGGCGAACTACCGC.........2611.001010000
...................CTCTGCCTGAGCCAGGTGATCGGT.............................................................................................................................................................................................................................................2411.001010000
droAna3
ATTAGCTATTCTTGCAGTCCTCTGCCTGAGCCAGGCGATCGTTGCTGAGCGTGAGTGTA-A--AAG--GA------------TCCAGGTCCAGA-------------AGGG---------------------A--------------------------------GTCA-----------CTTAAGTT----------TTCA-------ATC-----T------CTACAGGCATCGTCAACTGCTACTGGGGCACCTGGGCTAATTACCGCAGCGGCAATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................GTCCTCTGCCTGAGCCAGGCGATC................................................................................................................................................................................................................................................2412.002020000
.........................CTGAGCCAGGCGATCGTTGCTGAGCGC....................................................................................................................................................................................................................................2711.001100000
......................................................................................................................................................................................................................................GCATCGTCAACTGCTACTGGGGCA..........................2411.001010000
....................................................................................................................................................................................................................................................TACTGGGGCACCTGGGCTAATTACCGC.........2711.001010000
..................................................................................................................................................................................................................................................GCTACTGGGGCACCTGGGC...................1921.002020000
.................................................................................................................................................................................................................................................................GGGCTAATTACCGCAGCGGCAAT2311.001010000
..........................................................................................................................................................................................................................................CGTCAACTGCTACTGGGGCACCTG......................2411.001100000
..............................................................................................................................................................................................................................................AACTGCTACTGGGGCACCTGGGCTAAT...............2711.001100000
..........CTTGCAGTCCTCTGCCTGAGCC........................................................................................................................................................................................................................................................2211.001010000
..........................................................................................................................................................................................................................................CGTCAACTGCTACTGGGGC...........................1911.001100000
............................AGCCAGGCGATCGTTGCTGAGCGC....................................................................................................................................................................................................................................2411.001000001
................GTCCTCTGCCTGAGCCAGGC....................................................................................................................................................................................................................................................2011.001010000
................GTCCTCTGCCTGAGCCAGGCGAC.................................................................................................................................................................................................................................................2311.001010000
........................................................................................................................................................................................................................................ATCGTCAACTGCTACTGGGG............................2011.001100000
.............................................................................................................................................................................................................................................CAACTGCTACTGGGGCACCTGGGC...................2420.501010000
...................................................................................................................................................................................................................................................CTACTGGGGCACCTGGGC...................1820.501010000
droBip1
ATTAGCTGTTCTTGCAGTCCTCTGCCTGAGCCAGGCGATCGTTGCCGAGCGTGAGTCCA-A--AGG--GA------------T------------------------------------------------------------------ATC-AGATCTCAGGGAGT-A-----------CTAAAGGT----------TGTA-------ACC--CCC--------TATAGGCATCGTCAACTGCTACTGGGGCACCTGGGCCAACTACCGCAGCGGCAATSizeHit CountTotal NormTotal
No Reads
droKik1
ATTGGCATTACTCGCAGTCCTCTGCCTGAGCCAGGTGATCGGTGCTGAGCGTGAGTATA-G--CCCTGGAT----CGG---C-------CTGGA---AAGC-------ATTATCCTGA-------------------------------------------------CA-----------------------------CTGGATTTCCGACCA----C------TTCCAGGCATCGTCAACTGCTATTGGGGCACCTGGGCCAACTACCGCAGCGGCGATSizeHit CountTotal NormTotal
No Reads
droFic1
ATTGGCACTACTCGCAGTCCTTTGCCTGAGCCAGGTGATCGGTGCTGAACGTGAGTATT-A--TCCTAGGG----------------------A---AAACACCTGCAAGA---------------------A--------------------------------GTTA---------TA-----------------TATTTATCCAAAATAA----A------TATTAGGCATCGTGAACTGCTACTGGGGCACCTGGGCCAATTACCGCAGCGGCAATSizeHit CountTotal NormTotal
No Reads
droEle1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGGCATCGTCAACTGTTACTGGGGCACCTGGGCCAACTACCGCAGCGGCAGTSizeHit CountTotal NormTotal
No Reads
droRho1
TTTGGCACTACTCGCAGTCCTCTGCCTGAGCCAGGTGATCGGTGCTGAGCGTAAGTATTTG--GC-TA----------T-----TGG------G------A-------GGTAATCTTATGCTATAACTCGTG-----------------------------------------------------------------------------GA------T------CTCCAGGCATCGTCAACTGCTACTGGGGCACCTGGGCCAACTACAACAGCGGCAATSizeHit CountTotal NormTotal
No Reads
droBia1
TTTGGCACTACTCGCAGTCCTCTGCCTTGGCCAGGTGATCGGTGCTGAGCGTGAGTATG-A--CTTTGCGG-A--------------------C---AATC-------C--------------------------------------ACTTGGAG----------GTTATAGTAATCCCA-----------------TGTTTGTCCCTGGACA----A------CTCCAGGCATCGTCAACTGCTACTGGGGCACCTGGGCCAACTACCGCAGCGGCAACSizeHit CountTotal NormTotal
No Reads
droTak1
ATTGGCACTACTCGCAGTCCTATGCCTTAGCCAGGCGATCGTTGCTGAACGTGAGTATT-C--AATGGGG-----TGG---T-------G--AA---AATC-------A--------------------------------------TTACAGAG----------GTAATCGGATAACCAC----------------TTACAT--CCT-------------CGATTCCAGGCATCGTGAACTGCTACTGGGGCACCTGGGCCAACTACCGCAGCGGCCAGSizeHit CountTotal NormTotal
No Reads
droEug1
ATTGACACTACTCGCAGTCCTCTGCCTTAGCCAATTGATCGGTGCTGAACGTAAGTATTTG--GC-TA----------T-----AAA------G------A-------AGAG--------------------A---------------------------------T--------TCCTA-----------------TCTTTATTCCTGGACA----T------CATAAGGCATCGTCAACTGCTACTGGGGAACCTGGGCCAACTACCGCACTGGCAATSizeHit CountTotal NormTotal
No Reads
dm3
ATTGGCACTACTCGCTGTCCTCTGCCTTAGCCAGGTTATCGGTGCTGAACGTAAGTCTA-A--TCTACGCGAATTTGG---T-------GTTGGCTTAAAA-------G--------------------------------------------------------CTA-------ATCGA-----------------TCTGTATTCCTGATCT----GTT----ATCCAGGCATCGTCAACTGCTACTGGGGCACCTGGGCCAACTACCGCAGCGGCAATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................CAACTGCTACTGGGGCACCTGGGCCA.................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................A-----------------TCTGTATTCCTGATCT----G..............................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................GCCAGGTTATCGGTGCTGAACG.....................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................CTA-------ATCGA-----------------TCTGTATTCCTGA......................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................CTACTGGGGCACCTGGGCC..................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................TGGGCCAACTACCGCAGCGGC...2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................ATCGTCAACTGCTACTGGGGCACCTG......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CTTAGCCAGGTTATCGGTGCTGAACG.....................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................GTTATCGGTGCTGAACGC....................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................GCACCTGGGCCAACTACCGC.........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CAGGTTATCGGTGCTGAACGC....................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............CTGTCCTCTGCCTTAGCCAG......................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................ACCTGGGCCAACTACCGCAGC......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................AACTGCTACTGGGGCACCTG......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................AACTGCTACTGGGGCACCTGGGC...................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................GTT----ATCCAGGCATCGTCAACTG.....................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................CACCTGGGCCAACTACCGCAGCGGC...2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................CGTCAACTGCTACTGGGGC...........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ATTGGCACTACTCGCAGTCCTCTGCCTTAGCCAGGTTATCGGTGCTGAGCGTAAGTCTT-A--TCTGGGCGAATATGA---T-------GTTGGCCTAAAT-------G--------------------------------------------------------TTA-------ATCGA-----------------TCTGTATTCCTGGCAA----A------ATCCAGGCATCGTCAACTGCTACTGGGGCACCTGGGCCAACTACCGCAGCGGCAACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................TTA-------ATCGA-----------------TCTGTATTCC.........................................................................1818.00800006200000000000
..................................GTTATCGGTGCTGAGCGC....................................................................................................................................................................................................................................1812.00201100000000000000
.........................CTTAGCCAGGTTATCGGTGCTGAGCGC....................................................................................................................................................................................................................................2711.00100010000000000000
.........................CTTAGCCAGGTTATCGGTGCT..........................................................................................................................................................................................................................................2111.00100010000000000000
..................CCTCTGCCTTAGCCAGGTTATCGGTGCT..........................................................................................................................................................................................................................................2811.00100100000000000000
......ACTACTCGCAGTCCTCTGCCTTAGCCAGG.....................................................................................................................................................................................................................................................2911.00100010000000000000
................GTCCTCTGCCTTAGCCAGGTTATC................................................................................................................................................................................................................................................2411.00100100000000000000
.......................................................................................................................................................................................................................................CATCGTCAACTGCTACTGGG.............................2011.00100010000000000000
.....................................ATCGGTGCTGAGCGTAAGTCT..............................................................................................................................................................................................................................2111.00110000000000000000
droSec2
ATTGGCACTACTCGCAGTCCTCTGCCTTAGCCAGGTTATCGGTGCTGAACGTAAGTATT-A--TCTGGGTGAATATGA---T-------GTTGGCCTAAAT-------G--------------------------------------------------------TTA-------ATCGA-----------------TCTGTATTCCTGGCAA----A------ATCCAGGCATCGTCAACTGCTACTGGGGCACCTGGGCCAACTACCGCAGCGGCAACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................CTTAGCCAGGTTATCGGT.............................................................................................................................................................................................................................................18132.003200320
.........................CTTAGCCAGGTTATCGGTGCTGAACGC....................................................................................................................................................................................................................................27110.001000100
...........................................................................................................................................................................................................................................GTCAACTGCTACTGGGGCACCTGGGC...................2613.0030030
.................................................................................................................................................................................................................................................TGCTACTGGGGCACCTGGGC...................2013.0030030
............................AGCCAGGTTATCGGTGCTGAACGC....................................................................................................................................................................................................................................2413.0030030
..............................................................................................................................................................................................................................................AACTGCTACTGGGGCACCTGGGC...................2313.0030030
................GTCCTCTGCCTTAGCCAGGTTATCGGT.............................................................................................................................................................................................................................................2713.0030030
........................................................................................................................................................................................................................................ATCGTCAACTGCTACTGGGG............................2012.0020020
..............................................................................................................................................................................................................................................AACTGCTACTGGGGCACCTG......................2012.0020020
.............................GCCAGGTTATCGGTGCTGAACGC....................................................................................................................................................................................................................................2312.0020020
.................................GGTTATCGGTGCTGAACGC....................................................................................................................................................................................................................................1912.0020020
..........CTCGCAGTCCTCTGCCTTAGCCAGGT....................................................................................................................................................................................................................................................2611.0010010
...........................................................................................................................................................................................................................................................GCACCTGGGCCAACTACCGCAGCGGC...2611.0010010
..............CAGTCCTCTGCCTTAGCCAGGTTATCG...............................................................................................................................................................................................................................................2711.0010010
................................................................................................................................................................................................................................................CTGCTACTGGGGCACCTGGGCCA.................2311.0010010
...........................................................................................................................................................................................................................................GTCAACTGCTACTGGGGCACCTGGGCC..................2711.0010010
.....................................................................................................................................................................................................................................................................CAACTACCGCAGCGGCAAC1911.0010010
.........................CTTAGCCAGGTTATCGGTGCTGAAC......................................................................................................................................................................................................................................2511.0010010
..........................TTAGCCAGGTTATCGGTGCTGAACGC....................................................................................................................................................................................................................................2611.0010010
................................................................................................................................................................................................................................................CTGCTACTGGGGCACCTGGGC...................2111.0010010
........................................................ATT-A--TCTGGGTGAATATGA---T-------GT.............................................................................................................................................................................................2211.0010010
............................................................................................................................................................................................................................................................CACCTGGGCCAACTACCGCAGCGGCA..2611.0010010
.........................CTTAGCCAGGTTATCGGTGCTGAACG.....................................................................................................................................................................................................................................2611.0010010
..........................................................................................................................................................................................................................................CGTCAACTGCTACTGGGGCACCTGGGC...................2711.0010010
...........................................................................................................................................................................................................................................GTCAACTGCTACTGGGGCACCTGG.....................2411.0010010
................................................................................................................................................................................................................................................CTGCTACTGGGGCACCTGGGCC..................2211.0010010
...........................................................................................................................................................................................................................................................GCACCTGGGCCAACTACCGCAGCGG....2511.0010010
........................................................................................................................................................................................................................................ATCGTCAACTGCTACTGGG.............................1911.0010010
...............................CAGGTTATCGGTGCTGAACGC....................................................................................................................................................................................................................................2111.0010010
.......................................................................................................................................................................................................................................CATCGTCAACTGCTACTGGGG............................2111.0010010
..............................................................................................................................................................................................................................................AACTGCTACTGGGGCACCTGGGCC..................2411.0010010
.........................CTTAGCCAGGTTATCGGTG............................................................................................................................................................................................................................................1911.0010010
..................................................................................................................................................................................................................................................GCTACTGGGGCACCTGGGCCAAC...............2311.0010010
droYak3
ATTGGCACTACTCGCAGTCCTCTGCCTTAGCCAGGTTATCGGTGCTGAACGTAAGTCCC-A--TCTAGGCGAATTTAATTGT-------GTTGGCTTAATA-------G--------------------------------------------------------TTA-------ATTGA-----------------TCTGTATTCCTGGCAC----A------ATCCAGGCATCGTCAACTGCTACTGGGGCACCTGGGCCAATTACCGCAGCGGCAATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....GCACTACTCGCAGTCCTCTGC...............................................................................................................................................................................................................................................................2116.00606000000000
...GGCACTACTCGCAGTCCTCTGC...............................................................................................................................................................................................................................................................2215.00505000000000
.........................CTTAGCCAGGTTATCGGTGCTGAACGC....................................................................................................................................................................................................................................2715.00501000040000
.........................CTTAGCCAGGTTATCGGTGCTGAAC......................................................................................................................................................................................................................................2514.00404000000000
.........................CTTAGCCAGGTTATCGGTG............................................................................................................................................................................................................................................1913.00303000000000
...............................................................................................................................................................................................................................................ACTGCTACTGGGGCACCTGGGCCAAT...............2613.00301200000000
................GTCCTCTGCCTTAGCCAGGT....................................................................................................................................................................................................................................................2012.00202000000000
..............................................................................................................................................................................................................................................AACTGCTACTGGGGCACCTGGGCC..................2422.00404000000000
...........................................................................................................................................................................................................................................GTCAACTGCTACTGGGGCACCTGGGCCA.................2812.00201000010000
............................................................................................................................................................................................................................................................CACCTGGGCCAATTACCGCAGCGGCAAT2812.00202000000000
.....CACTACTCGCAGTCCTCTGC...............................................................................................................................................................................................................................................................2012.00202000000000
..............................................................................................................................................................................................................................................AACTGCTACTGGGGCACCTG......................2022.00404000000000
ATTGGCACTACTCGCAGTC.....................................................................................................................................................................................................................................................................1911.00101000000000
......ACTACTCGCAGTCCTCTGCCTTA...........................................................................................................................................................................................................................................................2311.00101000000000
ATTGGCACTACTCGCAGTCCTCTGC...............................................................................................................................................................................................................................................................2511.00101000000000
...........................................................................................................................................................................................................................................GTCAACTGCTACTGGGGCACCTGGGC...................2611.00100000010000
...................................................................................................................................................................................................................................................................GCCAATTACCGCAGCGGCAAT2111.00101000000000
..........................................................................................................................................................................................................................................CGTCAACTGCTACTGGGGC...........................1911.00100100000000
............................................................................................................................................................................................................................................................CACCTGGGCCAATTACCGCAGC......2211.00101000000000
...............AGTCCTCTGCCTTAGCCAGGTT...................................................................................................................................................................................................................................................2211.00101000000000
....GCACTACTCGCAGTCCTCTGCCTTAGCC........................................................................................................................................................................................................................................................2811.00101000000000
..............................................................................................................................................................................................................................................AACTGCTACTGGGGCACCTGGGCCAAT...............2711.00101000000000
...........................................................................................................................................................................................................................................................GCACCTGGGCCAATTACCGCAGCGGC...2611.00101000000000
............................................................................................................................................................................................................................................................CACCTGGGCCAATTACCGCAGCGGC...2511.00101000000000
.........ACTCGCAGTCCTCTGCCTTAGCCAG......................................................................................................................................................................................................................................................2511.00101000000000
..................CCTCTGCCTTAGCCAGGTTATCGGT.............................................................................................................................................................................................................................................2511.00101000000000
.........................CTTAGCCAGGTTATCGGT.............................................................................................................................................................................................................................................1811.00101000000000
.........ACTCGCAGTCCTCTGCCTTAGCCA.......................................................................................................................................................................................................................................................2411.00101000000000
............CGCAGTCCTCTGCCTTAGCCAGGTT...................................................................................................................................................................................................................................................2511.00101000000000
............................................................................................................................................................................................................................................................CACCTGGGCCAATTACCGCAGCGG....2411.00100000010000
......................TGCCTTAGCCAGGTTATCGGT.............................................................................................................................................................................................................................................2111.00100010000000
................................................................................................................................................................................................................................................CTGCTACTGGGGCACCTGGGC...................2121.00200010010000
................GTCCTCTGCCTTAGCCAGGTTATC................................................................................................................................................................................................................................................2411.00101000000000
......................................................................................................................................................................................................................................................CTGGGGCACCTGGGCCAATTACCGCAGC......2811.00100000010000
...........................................................................................................................................................................................................................................GTCAACTGCTACTGGGGCACCTGGGCCAA................2911.00110000000000
..........................TTAGCCAGGTTATCGGTGCTGAACGC....................................................................................................................................................................................................................................2611.00101000000000
...GGCACTACTCGCAGTCCTCTGCCTTA...........................................................................................................................................................................................................................................................2611.00101000000000
.............................GCCAGGTTATCGGTGCTGAACG.....................................................................................................................................................................................................................................2211.00100000010000
.TTGGCACTACTCGCAGTCCTCTGC...............................................................................................................................................................................................................................................................2411.00101000000000
..............................................................................................................................................................................................................................................AACTGCTACTGGGGCACCTGGGC...................2321.00202000000000
........................CCTTAGCCAGGTTATCGGT.............................................................................................................................................................................................................................................1911.00101000000000
....................................................................................................A-------G--------------------------------------------------------TTA-------ATTGA-----------------TCTGTATTCCTGGC.....................................................................2411.00100100000000
...............................................................................................................................................................................................................................................ACTGCTACTGGGGCACCTGGGCCA.................2420.50101000000000
..............................................................................................................................................................................................................................................AACTGCTACTGGGGCACCTGGGCCAA................2620.50101000000000
..................................................................................................................................................................................................................................................GCTACTGGGGCACCTGGGCCA.................2120.50101000000000
droEre2
ATTGGCACTACTCGCAGTCCTCTGCCTTAGCCAGGTTATCGGTGCTGAACGTAAGTCCT-A--TCTGGGCGGATTTCC---C-------GTTGGCCTAATA-------G--------------------------------------------------------TTA-------ATCCA-----------------TCTTTATTCCTGGAAT----G------ATCCAGGCATCGTCAACTGCTACTGGGGCACCTGGGCCAACTACCGCAGCGGCAATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........CTCGCAGTCCTCTGCCTTAGCCAGGTT...................................................................................................................................................................................................................................................2711.0011000000
..................................................................................................................................................................................................................................................GCTACTGGGGCACCTGGGC...................1920.5011000000

Generated: 05/17/2015 at 05:00 AM