ID:

dvi_6449

 Coordinate:

scaffold_12875:12346505-12346655 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-20.8 -20.5 -20.5

Flybase annnotation

CDS [Dvir\GJ21916-cds]; exon [dvir_GLEANR_7239:3]; intron [Dvir\GJ21916-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGCTATAGAATTGATTTTTAAGACTTGTTTCTTAAGCTTATAAGATATAGCTGCACACAAATTATTATGTACTCTTTTGAAAAGTCTTCACAAATTAGGAGTAATTAAGTTATTAAATAATATTCATATTCGAGACAATCAGGAATACATTGTTTTTGCTTGTTTTTAATTGCTCTAACTGGGTTTTTTTTTCCTTTTCAGAATGCCTATAACTGCTGGATTGCGGCGTGCATTTACGTGCTGACTCTGTT
**************************************************..........................((((((((..........(((((((((((((........................(((((((.((((((((...)))))))).))))))))))))))))...))))...........))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V116
male body		 M061
embryo
 V047
embryo
 SRR060672
9x160_females_carcasses_total
 M027
male body		 GSM1528803
follicle cells		 SRR060665
9_females_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060681
Argx9_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060654
160x9_ovaries_total
 SRR060655
9x160_testes_total
 SRR060659
Argentina_testes_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060670
9_testes_total
 SRR060671
9x160_males_carcasses_total
 SRR060679
140x9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR1106728
larvae
 SRR060669
160x9_females_carcasses_total
................................................................................................................................................................................................................ATAACTGCTGGATTGCGGC........................ 19 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TGCCTATAACTGCTGGATTGCGGCGTGCAT.................. 30 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GCCTATAACTGCTGGATTGC........................... 20 0 1 2.00 2 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GCCTATAACTGCTGGATTGCGGCGT...................... 25 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0
............................................................................................................................................................................................................GCCTATAACTGCTGGATTGCGGC........................ 23 0 1 2.00 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGGATTGCGGCGTGCATTTACGTG........... 24 0 1 2.00 2 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TGCGGCGTGCATTTACGTGCT......... 21 0 1 2.00 2 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CAGAATGCCTATAACTGCTGGATTGC........................... 26 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ATGCCTATAACTGCTGGATTGCGGCG....................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGGATTGCGGCGTGCATTTACGTGCT......... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TTAATTGCTCTCTCTGGGT................................................................... 19 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................CCTATAACTGCTGGATTGCGGC........................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................AGGAGTAATTAAGTTATT......................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ATCAGAATGCCTATAACTGCTGGATTGC........................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GATTGCGGCGTGCATTTACGTGC.......... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TCAGAATGCCTATAACTGCTGG................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GAATGCCTATAACTGCTGGATTGC........................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AATGCCTATAACTGCTGGATTGCGGC........................ 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................GTGCATTTACGTGCTGACTCTGT. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ATGCCTATAACTGCTGGATTGCGGC........................ 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................ATAACTGCTGGATTGCGGCG....................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ATGCCTATAACTGCTGGATTGCG.......................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CTATAACTGCTGGATTGCGGCGTGCATT................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AATCAGAATGCCTATAACTGCTGGA............................... 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................GTGCATTTACGTGCTGACT..... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CGTGCATTTACGTGCTGACTCTGTT 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AACTGCTGGATTGCGGCGT...................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................TATAAGATATAGCTACACACAAATTA........................................................................................................................................................................................... 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GCTGGATTGCGGCGTGCA................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GCTATAACTGCTGGATTGCGGCGTG..................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................ATAACTGCTGGATTGCTGCGTGC.................... 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TGCTGGATTGCGGCGTGCATT................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TATAGCTACACACAAATTATTATGT..................................................................................................................................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................ATGCTTATAACTGCTGGATTGCGGC........................ 25 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TGCGGCGTGCATTTACGTG........... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AGAATGCCTATAACTGCTGGATTGCGG......................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TCAGAATGCCTATAACTGCTGGATTGCGGC........................ 30 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................................................................ATGCCTATAACTGCTGGATTGC........................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................TGTACTCTTTTGAAAAGTCTTCACAAAT............................................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ATGCCTATAACTGCTGGATTGCGGCGTGC.................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AACTGCTGGATTGCGGCGTGC.................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................TTTACGTGCTGACTCTGT. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AGAATGCCTATAACTGCTGGAT.............................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................ACTGCTGGATTGCGGCGTGCATT................. 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................ATAACTGCTGGATTGCGGCGTGC.................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ATGCCTATAACTGCTGGATTGCGGG........................ 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TTGCGGCGTGCATTTGCGTGC.......... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................TGGATTGCGGCGTGCATTTACGTGC.......... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................TATAACTGCTGGATTGCGGCGTGC.................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................ATAACTGCTGGATTGCGGCGTGCA................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TGCCTATAACTGCTGGATTGCGGCGT...................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GCCTATAACTGCTGGATTGCGGCGTGC.................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TGCGGCGTGCATTTACGTGCTGAC...... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................AATCAGAATGCCTATAACTG.................................... 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AATCAGAATGCCTATAACTGC................................... 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................ATGTGCTCTTTTGAGCAGTCT.................................................................................................................................................................... 21 3 5 0.40 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
...........................................................................................................................................................................GCACTAAGTGGGTTTTTTT............................................................. 19 2 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................GACAATCAGGAAGACATGCT.................................................................................................. 20 3 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................AGCTGCTCTCAGATTATTAT....................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TCGATATCTTAACTAAAAATTCTGAACAAAGAATTCGAATATTCTATATCGACGTGTGTTTAATAATACATGAGAAAACTTTTCAGAAGTGTTTAATCCTCATTAATTCAATAATTTATTATAAGTATAAGCTCTGTTAGTCCTTATGTAACAAAAACGAACAAAAATTAACGAGATTGACCCAAAAAAAAAGGAAAAGTCTTACGGATATTGACGACCTAACGCCGCACGTAAATGCACGACTGAGACAA
**************************************************..........................((((((((..........(((((((((((((........................(((((((.((((((((...)))))))).))))))))))))))))...))))...........))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V047
embryo
 SRR060666
160_males_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR1106729
mixed whole adult body
 SRR060679
140x9_testes_total
 SRR060664
9_males_carcasses_total
 SRR060678
9x140_testes_total
....................................................................................................................................................................................................................................ACGTAAATGCACGACTGAGGC.. 21 1 1 1.00 1 0 0 1 0 0 0 0
...............................................................................................................................................................................................AGGAAAAGTCTTACGGATA......................................... 19 0 1 1.00 1 0 0 0 1 0 0 0
........................................................................TGAAAACTCTTCAGAAGTG................................................................................................................................................................ 19 2 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................................................................................CGAGGTTGCCCCAAAAAAA............................................................. 19 2 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................GGGGGAAGTCTTACGGATA......................................... 19 3 17 0.06 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................AAGGAAAAGTCTTTCGAA........................................... 18 2 17 0.06 1 0 0 0 0 1 0 0
........................................................................................................................................................................................AAAAAAAAGGAACAGTCGT................................................ 19 2 20 0.05 1 0 0 0 0 0 0 1
.....................................................................................................................................................................................CCAAAAAAAAGGGAAAGG.................................................... 18 2 20 0.05 1 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:12346455-12346705 + dvi_6449 AGCTATAGAATTGATTTTTAAGACTTGTTTCTTAA-----------------------------------GCTTATAAGATATAGC-----------------------------------------------TGCACACAAATTATTATGTACTCTTTTGAAAA-------GTCTTCACAAATTAGGAGTAATTAAGTTA----------------TTAAA---TA-----ATATTCATATTCGAGACAATCAG--------------------------------------------------------------------------------------------------------GAATACATTGTTTTTGCTTGTTTTTAATTGCTCTAACTGG---------------------------------GTTTTTTTTTCCTTTTCAGAATGCCTATAACTGCTGGATTGCGGCGTGCATTTACGTGCTGACT----CTGTT
droMoj3 scaffold_6336:6788-6978 - AGCTGGAGACTTCATTTTTTTTT-TTTTTTTTAAT----------------------------------GACCGTATATA-----CAGCGCGGATGTCGAGTTTGCTTTTAAAATT--------------------CGATAAATCATCC-------CGTT--------ATAATTTTATCG----------------------------------------AATAAAA-----ACATTCAAGTTCAAGTCAGTTGCCACTATA-------------------------------------A----------------A-------------------------TAATTGTGA------ATGATTTTAACTTTTTTTTT--------------------------------------------------------------------TTTTTAAATTTCTAAAA------------------------------------------T
droGri2 scaffold_15245:8008790-8008854 - TTTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTTGCAGAATGCGTATAACTGCTGGATTGCGGCGTGCATCTACGTGTTGACC----TTGTT
droWil2 scf2_1100000004382:1088580-1088735 + TCTGCTCAAATCAAC--TT-----------------------------------------------------------------------------------------------------------------------------------------------------AACAAGTTGTCA----------------------------------------AA---GA-----A-AGCCCAGATAACTTCAGATACGT------------------------------------------------------------------------------------------------------------------------------------------CAATCATTGGTTTTTGTATGTTAATCACCCTTTTTT-------TATTCGTTTTCAGAATGCCTACAACTGCTGGATTGCCGCCTGCATCTATGTGTTGACG----CTGCT
dp5 3:97583-97670 + TTTTTGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGTAACAGTTATC---------------------------------GGTTTTTTTTTTCAGAACGCCTACAACTGCTGGATCGCAGCATGCATTTATGTTTTGACA----TTGTT
droPer2 scaffold_2:285660-285746 + TTTTTGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGTAACAGTTATC---------------------------------GG-TTTTTTTTTCAGAACGCCTACAACTGCTGGATCGCAGCATGCATTTATGTTTTGACA----TTGTT
droAna3 scaffold_13266:19484984-19485040 + TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAGAACGCCTATAACTGCTGGATTGCAGCTTGCATCTATGTACTGACA----CTGTT
droBip1 scf7180000395864:18700-18756 + TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAGAATGCCTATAACTGCTGGATTGCAGCATGCATCTATGTGCTGACG----TTGTT
droKik1 scf7180000298808:32930-32986 - TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAGAACGCCTACAATTGCTGGATTGCTGCATGCATATACGTTTTGACA----TTACT
droFic1 scf7180000449205:11504-11616 - TACCCGTAACGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAG--------------------------------------------------------------------------------------------------------G--------GTTTTTAC-----------------------------------TTCGCCAAACATTTTTGCTGTATT-TG-TTTTTTTTTTAGAACGCCTACAACTGCTGGATTGCAGCATGCATCTACGTGTTGACA----TTGTT
droEle1 scf7180000491347:366449-366588 - AGCCAAAATATTGGTTTTTAAAATGCAGATCCTAG----------------------------------TTATACCCAAG-----CAGC-----------------------------------------------CCACAAATCATGG-------TTTTT--------GT------TTTA----------------------------------------------------------------------------------------------------------------------A-----------------ATTGGGTAGCTAAGTAAAGGGTATATAATAGTCGAGATACTCGAATATAGCGTTTCTTCTTGTT---------------------------------------------------------------------------------------------------------------------------T
droRho1 scf7180000779201:44818-45034 + AGCTAGAAGATTGGCATTTTGCATGCAGATTCTAG----------------------------------GAGTTCCTACG-----CAGCGCA-------AGTTTGTTTCAAAAAGGTGCCACGCCCCCTTTAACGCCCACAATCGCTTATATACGATTTTAAAAATTTAAATATTTCGGA-------AAAGTAAAAATGCAG---------TTTTAT--------GGTGTTTATA----------------------------------------------------------------T-------------------------------------ATATCTGATAGTCGGGGCACCCGACTATAGCGTTCTCTCTTGTT-------------------------------------------------------------------------------------------------------------TTAAA--------TT
droBia1 scf7180000301381:11861-11916 - TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAATGCCTACAACTGCTGGATTGCTGCATGCATCTATGTACTCACA----TTGTT
droTak1 scf7180000415795:874065-874267 - AGCTAGAAGATTGACATTTTGCATTCAGATTCTAG----------------------------------GAGTTTCAAAA-----G----------------------------GGTGCCACGCCCCCTCTAACGCCCACAATCGCTTATATACGATTTTAAAAATTTCAATATTTTGGA-------AAAGTAAAAATGCAG---------TTTTAT--------TGTATT-----------------------------------------------------------T----ATC-AATACCTATCGAA-------------------------------------------------ATGTAAATTTTTTAAT--TTTTTAATTTTTTA---------------------------------------------------------------------------AATCGGACCA-----------------T----TCGTT
droEug1 scf7180000409462:726737-726921 - AGATACAAAGTTGAT--TAAGCATGAAGATTCTTG----------------------------------AGGTCCCGGGA-----CAGCGCA---------------------TCCTGCCACGCCCACTCTAACGCCCACAAATCACGA-------ATGCA--------AAAATCTCGGGAACTAAAGAGCTAAAAAGTTAG---------TGTTAG--------GA-----ATA-----------------------------------------------------------------------------------------------------TGTATTTTAGAGATGCGATACTCGACTATAACGTTTCCTCTTGTTTTT------------------------------------------------------------------------------------------------------------------------A
dm3 chr2R:21060467-21060622 - AGCTAGAAGGTTGAGATTAGGCATTCAGGTTCTAA----------------------------------AGTTGAA-------------------------------------AACTAACACGCCCACAC--------------------------TTTTAAAATTTT---------T-------------------------------------------------------------------------------------TTAAATTT-----TTTCTCATTTTATTT----TGC-AATATCTGTCGATATCCG-------------------------TAACCGTAGGAAAACCCGACTATAGCATTCTCTCTTGTT---------------------------------------------------------------------------------------------------------------------------T
droSim2 3r:80033-80225 - AGCTAGAAGGTTAAGATTCAGAA-ACAGATTCTTG----------------------------------AGACATAGACG-----CAGCGCA-------AGTTTGT----------TGAC--ACCCATAT--------------------------TT-TGAAAA-------A------------------TAT--------------------------------------------------------AATATCAATATATATATTTATATTTTTTTATAATTTTATTAATCTTGTAAATTTCTATCAGTATCTG-------------------------T----------------CTACATAGCATTCTTTCTTGTTT------------------------------------------------------------------------------------------------TACATTTAAGTTT----T----TTGTT
droSec2 scaffold_5:4656839-4657017 - AGCTAGAATGTAACGATTGTTTTGTTATTTTTTAAATTTTGAAACACACCT---------------------------------------------------------------------------------------------------------TTTGAAAAATT------------------------------------------------------------------------------------------------TTATTTTTTTATTATTA-----TTATTT----TTT-A-----------------ATTTATCAGCTGAATAACAGGTATCTGATAGTCGAGGCACTCCACTATAGCACTCTCTCTTGTTCGTA--------------------------------------------------------------------------------------------------TTGTGATTTGATAAGGCTTCTT
droYak3 chr2h:125496-125591 - TTTTTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTACTAATTGCAGGTAT---------------------------------ATTATATTTTTGTTTTCAGAATGCCTATAATTGCTGGATTGCAGCATGTATCTATGTTTTGACC----TTATT
droEre2 scaffold_4770:10984478-10984677 + AGCTAGAATGTTGATTTCAAA--TTTAGA-------------AATATATTTTTTTTAATTTTTTTTTTGATGTTATGATG-----TTGTACA-------AATTCAA---------------------------------T---------------------AAAATTTAAAAATTTCCCA-------AAAAAAAAAAA--AGATTTATTCA------CTTGA---TC-----ATTT---------------------------------------------------TTTC----CCC-AGTTTCTACCGATATTG----------------------C---A----------------GAAAATGTTGAAATTTCTCGTTTGCACT-----------------------------------------------------------------------------------------------TCCACTAGC---------TGAGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AGCTATAGAATTGATTTTTAAGACTTGTTTCTTAA-----------------------------------GCTTATAAGATATAGC-----------------------------------------------TGCACACAAATTATTATGTACTCTTTTGAAAA-------GTCTTCACAAATTAGGAGTAATTAAGTTA----------------TTAAA---TA-----ATATTCATATTCGAGACAATCAG--------------------------------------------------------------------------------------------------------GAATACATTGTTTTTGCTTGTTTTTAATTGCTCTAACTGG---------------------------------GTTTTTTTTTCCTTTTCAGAATGCCTATAACTGCTGGATTGCGGCGTGCATTTACGTGCTGACT----CTGTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACTGCTGGATTGCGGC............................1912.002000200000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTATAACTGCTGGATTGCGGCGTGCAT......................3012.002000000000000000000000000000000000000000000000000000000000000002
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTATAACTGCTGGATTGC...............................2012.002000100000000000000000000000000001000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTATAACTGCTGGATTGCGGCGT..........................2512.002000000000000001000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTATAACTGCTGGATTGCGGC............................2312.002001000000000000100000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATTGCGGCGTGCATTTACGTG...............2412.002000001000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGCGTGCATTTACGTGCT.............2112.002000000000000000101000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAATGCCTATAACTGCTGGATTGC...............................2612.002200000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCTATAACTGCTGGATTGCGGCG...........................2611.001000000000001000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATTGCGGCGTGCATTTACGTGCT.............2611.001000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTATAACTGCTGGATTGCGGC............................2211.001000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................AGGAGTAATTAAGTTA----------------TT..............................................................................................................................................................................................................................................................................................1811.001000000000100000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCGGCGTGCATTTACGTGC..............2311.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAATGCCTATAACTGCTGG....................................2211.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGCCTATAACTGCTGGATTGC...............................2411.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCCTATAACTGCTGGATTGCGGC............................2611.001000000000000000000000000000000000000000000000000000000000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTTACGTGCTGACT----CTGT.2311.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCTATAACTGCTGGATTGCGGC............................2511.001000000000000000000000000000000001000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACTGCTGGATTGCGGCG...........................2011.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCTATAACTGCTGGATTGCG..............................2311.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATAACTGCTGGATTGCGGCGTGCATT.....................2811.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTTACGTGCTGACT----.....1911.001000000000000000000000010000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGCATTTACGTGCTGACT----CTGTT2511.001000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCTGGATTGCGGCGT..........................1911.001100000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGATTGCGGCGTGCA.......................1811.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGGATTGCGGCGTGCATT.....................2111.001000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGCGTGCATTTACGTG...............1911.001000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGCCTATAACTGCTGGATTGCGG.............................2711.001000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAATGCCTATAACTGCTGGATTGCGGC............................3011.001000000000000000000000000000000000000000000000000000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCTATAACTGCTGGATTGC...............................2211.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................TGTACTCTTTTGAAAA-------GTCTTCACAAAT.................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCTATAACTGCTGGATTGCGGCGTGC........................2911.001000100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCTGGATTGCGGCGTGC........................2111.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACGTGCTGACT----CTGT.1811.001000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGCCTATAACTGCTGGAT..................................2211.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCTGGATTGCGGCGTGCATT.....................2311.001000000000000000000000010000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACTGCTGGATTGCGGCGTGC........................2311.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCTATAACTGCTGGATTGCGGG............................2511.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATTGCGGCGTGCATTTACGTGC..............2511.001000000000000000000001000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAACTGCTGGATTGCGGCGTGC........................2411.001000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACTGCTGGATTGCGGCGTGCA.......................2411.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTATAACTGCTGGATTGCGGCGT..........................2611.001000010000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTATAACTGCTGGATTGCGGCGTGC........................2711.001000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGCGTGCATTTACGTGCTGAC..........2411.001000000000000000000000100000000000000000000000000000000000000000
droMoj3
AGCTGGAGACTTCATTTTTTTTT-TTTTTTTTAAT----------------------------------GACCGTATATA-----CAGCGCGGATGTCGAGTTTGCTTTTAAAATT--------------------CGATAAATCATCC-------CGTT--------ATAATTTTATCG----------------------------------------AATAAAA-----ACATTCAAGTTCAAGTCAGTTGCCACTATA-------------------------------------A----------------A-------------------------TAATTGTGA------ATGATTTTAACTTTTTTTTT--------------------------------------------------------------------TTTTTAAATTTCTAAAA------------------------------------------TSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................................TCAAGTTCAAGTCAGTTGCCACTAC....................................................................................................................................................................................................................................................25170.061000010
droGri2
TTTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTTGCAGAATGCGTATAACTGCTGGATTGCGGCGTGCATCTACGTGTTGACC----TTGTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCGGCGTGCATCTACGTGTTG............2511.00110
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCTGGATTGCGGCGTGCATCT....................2511.00101
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGCGTATAACTGCTGGATTGC...............................2411.00110
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGCGTATAACTGCTGGATT.................................2211.00101
droWil2
TCTGCTCAAATCAAC--TT-----------------------------------------------------------------------------------------------------------------------------------------------------AACAAGTTGTCA----------------------------------------AA---GA-----A-AGCCCAGATAACTTCAGATACGT------------------------------------------------------------------------------------------------------------------------------------------CAATCATTGGTTTTTGTATGTTAATCACCCTTTTTT-------TATTCGTTTTCAGAATGCCTACAACTGCTGGATTGCCGCCTGCATCTATGTGTTGACG----CTGCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAACTGCTGGATTGCC..............................1915.00530020
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAACTGCTGGATTGCCGCCT..........................2314.00420200
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGGATTGCCGCCTGC........................1913.00330000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCCGCCTGCATCTATGTGT..............2313.00302010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAACTGCTGGATTGCCGCCTGC........................2512.00210010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAACTGCTGGATTGCCGC............................2012.00201100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCTACAACTGCTGGATTGCC..............................2312.00220000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTGCCGCCTGCATCTATGT................2211.00101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCTGGATTGCCGCCTGC........................2011.00101000
..............................................................................................................................................................................................................................................CAGATAACTTCAGATACGT------------------------------------------------------------------------------------------------------------------------------------------CA............................................................................................................2111.00101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATTGCCGCCTGCATCTATGTGTTGA...........2811.00101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAACTGCTGGATTGCCG.............................2011.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGCCTACAACTGCTGG....................................2011.00101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGCCTACAACTGCTGGATTGCC..............................2511.00101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCTACAACTGCTGGATTG................................2111.00101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCCGCCTGCATCTATGTGTTGAC..........2711.00100100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAACTGCTGGATTGCCGCCTG.........................2411.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAACTGCTGGATTGCCGC............................2111.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCCTGCATCTATGTGT..............1911.00101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTACAACTGCTGGATTGCCGCCTG.........................2611.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAACTGCTGGATTGCCGCCTGC........................2411.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGTGTTGACG----CTGCT1811.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCCGCCTGCATCTATGTGTT.............2411.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTGCCGCCTGCATCTATGTGTT.............2511.00101000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCTGGATTGCCGCCTGC........................2111.00101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTGCTGGATTGCCGCCTGCATCTAT..................2811.00101000
................................................................................................................................................................................................................................................GATAACTTCAGATACGT------------------------------------------------------------------------------------------------------------------------------------------CAATCATTGG....................................................................................................2711.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCCGCCTGCATCTATGTGT..............2211.00100100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTGCATCTATGTGTTGA...........2011.00101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTGCTGGATTGCCGCCTG.........................2111.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCTGGATTGCCGCCTT.........................2011.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTACAACTGCTGGATTGCCGCC...........................2511.00101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTGCTGGATTGCCGC............................1811.00101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGCCTGCATCTATGTGT..............2011.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTGCTGGATTGCCGCCT..........................2011.00110000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCTACAACTGCTGGATTGCCGC............................2511.00100010
dp5
TTTTTGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGTAACAGTTATC---------------------------------GGTTTTTTTTTTCAGAACGCCTACAACTGCTGGATCGCAGCATGCATTTATGTTTTGACA----TTGTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTGCTGGATCGCAGCAT..........................2011.0010010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCATTTATGTTTTGAC..........1911.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTACAACTGCTGGATCGCAGCATGC........................2811.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTACAACTGCTGGATCGC...............................2011.0010010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCCTACAACTGCTGGATCGCA..............................2411.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAACGCCTACAACTGCT......................................1911.0010010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................AACAGTTATC---------------------------------GGTTTTTTTTTTCAG......................................................2511.0010000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTACAACTGCTGGATCGC...............................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTACAACTGCTGGATCGCA..............................2111.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAACTGCTGGATCGCA..............................1911.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTACAACTGCTGGATCGCAG.............................2311.0010100000000
droPer2
TTTTTGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGTAACAGTTATC---------------------------------GG-TTTTTTTTTCAGAACGCCTACAACTGCTGGATCGCAGCATGCATTTATGTTTTGACA----TTGTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAACGCCTACAACTGCTGGATCGCAGC............................2914.004400000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCCTACAACTGCTGGATCGC...............................2214.004400000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTACAACTGCTGGATCGCAGCATG.........................2712.002200000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAACGCCTACAACTGCTGGATC.................................2411.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAACGCCTACAACTGCTG.....................................2011.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAACTGCTGGATCGCA..............................1911.001010000
droAna3
TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAGAACGCCTATAACTGCTGGATTGCAGCTTGCATCTATGTACTGACA----CTGTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATCTATGTACTGACA----CTGTT2311.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAACGCCTATAACTGCTGGATTGC...............................2630.672011000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAACGCCTATAACTGCTGGATT.................................2430.672110000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGCCTATAACTGCTGGAT..................................2130.331100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTATAACTGCTGGATTGCAGCTTGC........................2730.331010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTATAACTGCTGGATTGC...............................2030.331010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGCCTATAACTGCTGGATTGC...............................2430.331010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTATAACTGCTGGATTGC...............................2130.331100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCCTATAACTGCTGGATTGC...............................2230.331010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTTGCATCTATGTACT.............1930.331010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCAGCTTGCATCTATG.................2030.331100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCCTATAACTGCTGGATTGCA..............................2330.331010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTATAACTGCTGGAT..................................1830.331010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACTGCTGGATTGCAGCC...........................2030.331010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCCTATAACTGCTGGATTGC...............................2330.331100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAACGCCTATAACTGCTG.....................................2030.331100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTATAACTGCTGGATTGCAGCT...........................2430.331010000
droBip1
TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAGAATGCCTATAACTGCTGGATTGCAGCATGCATCTATGTGCTGACG----TTGTTSizeHit CountTotal NormTotal
No Reads
droKik1
TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAGAACGCCTACAATTGCTGGATTGCTGCATGCATATACGTTTTGACA----TTACTSizeHit CountTotal NormTotal
No Reads
droFic1
TACCCGTAACGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAG--------------------------------------------------------------------------------------------------------G--------GTTTTTAC-----------------------------------TTCGCCAAACATTTTTGCTGTATT-TG-TTTTTTTTTTAGAACGCCTACAACTGCTGGATTGCAGCATGCATCTACGTGTTGACA----TTGTTSizeHit CountTotal NormTotal
No Reads
droEle1
AGCCAAAATATTGGTTTTTAAAATGCAGATCCTAG----------------------------------TTATACCCAAG-----CAGC-----------------------------------------------CCACAAATCATGG-------TTTTT--------GT------TTTA----------------------------------------------------------------------------------------------------------------------A-----------------ATTGGGTAGCTAAGTAAAGGGTATATAATAGTCGAGATACTCGAATATAGCGTTTCTTCTTGTT---------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droRho1
AGCTAGAAGATTGGCATTTTGCATGCAGATTCTAG----------------------------------GAGTTCCTACG-----CAGCGCA-------AGTTTGTTTCAAAAAGGTGCCACGCCCCCTTTAACGCCCACAATCGCTTATATACGATTTTAAAAATTTAAATATTTCGGA-------AAAGTAAAAATGCAG---------TTTTAT--------GGTGTTTATA----------------------------------------------------------------T-------------------------------------ATATCTGATAGTCGGGGCACCCGACTATAGCGTTCTCTCTTGTT-------------------------------------------------------------------------------------------------------------TTAAA--------TTSizeHit CountTotal NormTotal
No Reads
droBia1
TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAATGCCTACAACTGCTGGATTGCTGCATGCATCTATGTACTCACA----TTGTTSizeHit CountTotal NormTotal
No Reads
droTak1
AGCTAGAAGATTGACATTTTGCATTCAGATTCTAG----------------------------------GAGTTTCAAAA-----G----------------------------GGTGCCACGCCCCCTCTAACGCCCACAATCGCTTATATACGATTTTAAAAATTTCAATATTTTGGA-------AAAGTAAAAATGCAG---------TTTTAT--------TGTATT-----------------------------------------------------------T----ATC-AATACCTATCGAA-------------------------------------------------ATGTAAATTTTTTAAT--TTTTTAATTTTTTA---------------------------------------------------------------------------AATCGGACCA-----------------T----TCGTTSizeHit CountTotal NormTotal
No Reads
droEug1
AGATACAAAGTTGAT--TAAGCATGAAGATTCTTG----------------------------------AGGTCCCGGGA-----CAGCGCA---------------------TCCTGCCACGCCCACTCTAACGCCCACAAATCACGA-------ATGCA--------AAAATCTCGGGAACTAAAGAGCTAAAAAGTTAG---------TGTTAG--------GA-----ATA-----------------------------------------------------------------------------------------------------TGTATTTTAGAGATGCGATACTCGACTATAACGTTTCCTCTTGTTTTT------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
dm3
AGCTAGAAGGTTGAGATTAGGCATTCAGGTTCTAA----------------------------------AGTTGAA-------------------------------------AACTAACACGCCCACAC--------------------------TTTTAAAATTTT---------T-------------------------------------------------------------------------------------TTAAATTT-----TTTCTCATTTTATTT----TGC-AATATCTGTCGATATCCG-------------------------TAACCGTAGGAAAACCCGACTATAGCATTCTCTCTTGTT---------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........TGAGATTAGGCATTCAGGTTCTAA----------------------------------AGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................ACCCGACTATAGCATTCTCTCTT...............................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TCCG-------------------------TAACCGTAGGAAAACCCGACTATA...........................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................................................................................................................TCTGTCGATATCCG-------------------------TAACCGTAGGAA.......................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................TAGGAAAACCCGACTATAGCATTCTC...................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................CCGACTATAGCATTCTCTCT................................................................................................................................2030.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................CCGACTATAGCATTCTCTCTTG..............................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................CCGACTATAGCATTCTCTCTT...............................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................AACCCGACTATAGCATTCTCTCTTC..............................................................................................................................2540.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................CCGACTATAGCATTCTCT..................................................................................................................................1850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................CCGACTATAGCATTCTCTCTTGC.............................................................................................................................2370.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GCTAGAAGGTTGAGATTAGGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2270.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....GAAGGTTGAGATTAGGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1890.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................T-------------------------------------------------------------------------------------TTAAATTT-----TTTCTCATTTTATTT----..................................................................................................................................................................................................................24110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TTAAATTT-----TTTCTCATTTTATTT----..................................................................................................................................................................................................................23110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................TT---------T-------------------------------------------------------------------------------------TTAAATTT-----TTTCTCATTTTATTT----A.................................................................................................................................................................................................................27170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................CCGACTATAGCATTCTCC..................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AGCTAGAAGGTTAAGATTCAGAA-ACAGATTCTTG----------------------------------AGACATAGACG-----CAGCGCA-------AGTTTGT----------TGAC--ACCCATAT--------------------------TT-TGAAAA-------A------------------TAT--------------------------------------------------------AATATCAATATATATATTTATATTTTTTTATAATTTTATTAATCTTGTAAATTTCTATCAGTATCTG-------------------------T----------------CTACATAGCATTCTTTCTTGTTT------------------------------------------------------------------------------------------------TACATTTAAGTTT----T----TTGTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................TTG----------------------------------AGACATAGACG-----CAGCGCA-------AGA...................................................................................................................................................................................................................................................................................................................................................................................................................2420.50100000000000001000
........................ACAGATTCTTG----------------------------------AGACATAGACG-----CGTA................................................................................................................................................................................................................................................................................................................................................................................................................................2640.25100000000000010000
................................TTG----------------------------------AGACATAGACG-----CAGC................................................................................................................................................................................................................................................................................................................................................................................................................................1840.25100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................ACATAGCATTCTTTCTA...............................................................................................................................1740.25100000010000000000
...........................................................................AGACG-----CAGCGCA-------AGTTTGT----------TG...................................................................................................................................................................................................................................................................................................................................................................................................21200.10200000000002000000
...........................................................................AGACG-----CAGCGCA-------AGTTTGT----------TGA..................................................................................................................................................................................................................................................................................................................................................................................................22200.05100000000001000000
droSec2
AGCTAGAATGTAACGATTGTTTTGTTATTTTTTAAATTTTGAAACACACCT---------------------------------------------------------------------------------------------------------TTTGAAAAATT------------------------------------------------------------------------------------------------TTATTTTTTTATTATTA-----TTATTT----TTT-A-----------------ATTTATCAGCTGAATAACAGGTATCTGATAGTCGAGGCACTCCACTATAGCACTCTCTCTTGTTCGTA--------------------------------------------------------------------------------------------------TTGTGATTTGATAAGGCTTCTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TTTTTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTACTAATTGCAGGTAT---------------------------------ATTATATTTTTGTTTTCAGAATGCCTATAATTGCTGGATTGCAGCATGTATCTATGTTTTGACC----TTATTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATTGCAGCATGTATCTAT..................2111.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTATGTTTTGACC----T....1811.00110000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTATCTATGTTTTGACC----T....2011.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTATAATTGCTGGATTGC...............................2111.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTGCTGGATTGCAGCAT..........................2111.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTATGTTTTGACC----TTATT2211.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAATTGCTGGATTGCAGCAT..........................2211.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGGATTGCAGCATGTATCTATG.................2511.00101000000000
droEre2
AGCTAGAATGTTGATTTCAAA--TTTAGA-------------AATATATTTTTTTTAATTTTTTTTTTGATGTTATGATG-----TTGTACA-------AATTCAA---------------------------------T---------------------AAAATTTAAAAATTTCCCA-------AAAAAAAAAAA--AGATTTATTCA------CTTGA---TC-----ATTT---------------------------------------------------TTTC----CCC-AGTTTCTACCGATATTG----------------------C---A----------------GAAAATGTTGAAATTTCTCGTTTGCACT-----------------------------------------------------------------------------------------------TCCACTAGC---------TGAGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................................................................................................................................................................CTACCGATATTG----------------------C---A----------------GAAAATGTTG........................................................................................................................................2440.2511000000

Generated: 05/17/2015 at 04:52 AM