ID:

dvi_639

 Coordinate:

scaffold_10322:445124-445174 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.3

Flybase annnotation

exon [dvir_GLEANR_16525:1]; CDS [Dvir\GJ16098-cds]; exon [dvir_GLEANR_16525:2]; CDS [Dvir\GJ16098-cds]; intron [Dvir\GJ16098-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------##################################################
AAATAATAGAAATCAATTGCAAGTTACGCCCTTGCACACAGGGGCAATCGCCAACGCGGACTCAAAGCCAATGCCTATAAGTCCGATGGTCTCCATTACAGCACCTGCGCCAGCTGAAGACAATAAGATTGACACAACAGACAACTATGGC
**************************************************(((...((((((....((....)).....)))))).)))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060675
140x9_ovaries_total
 SRR060679
140x9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 M027
male body		 SRR060688
160_ovaries_total
 M061
embryo
 V116
male body		 SRR060654
160x9_ovaries_total
 SRR060683
160_testes_total
 SRR060689
160x9_testes_total
 V047
embryo
 SRR060672
9x160_females_carcasses_total
 SRR060656
9x160_ovaries_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 GSM1528803
follicle cells		 SRR060666
160_males_carcasses_total
..........................................................................................................................ATAAGATTGACACAACAGACAACT..... 24 0 1 103.00 103 35 16 11 7 24 4 3 0 2 0 1 0 0 0 0 0 0 0
..........................................................................................................................ATAAGATTGACACAACAGACAACTAT... 26 0 1 82.00 82 16 29 16 19 0 0 0 1 0 1 0 0 0 0 0 0 0 0
.....ATAGAAATCAATTGCAAGTTACGCCC........................................................................................................................ 26 0 1 67.00 67 60 0 0 0 2 0 2 3 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATAAGATTGACACAACAGACAACTATGG. 28 0 1 46.00 46 33 4 2 3 2 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................CCAATGCCTATAAGTCCGATGGTC............................................................ 24 0 1 45.00 45 29 0 0 1 2 5 2 0 3 0 1 1 0 0 0 1 0 0
..........................................................................................................................ATAAGATTGACACAACAGACAACTA.... 25 0 1 39.00 39 12 7 10 6 0 3 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................ATAAGATTGACACAACAGACAAC...... 23 0 1 33.00 33 10 4 8 8 1 0 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATAAGATTGACACAACAGACAACTATG.. 27 0 1 28.00 28 8 4 5 3 6 0 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................CCAATGCCTATAAGTCCGATGGTCT........................................................... 25 0 1 27.00 27 22 2 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.....ATAGAAATCAATTGCAAGTTACGCCCT....................................................................................................................... 27 0 1 24.00 24 22 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.....ATAGAAATCAATTGCAAGTTACGCC......................................................................................................................... 25 0 1 22.00 22 20 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
...................................................................CCAATGCCTATAAGTCCGATGGTCTC.......................................................... 26 0 1 19.00 19 12 1 0 1 1 4 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................CCAATGCCTATAAGTCCGATGG.............................................................. 22 0 1 18.00 18 16 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0
...................................................................CCAATGCCTATAAGTCCGATGGTCTCC......................................................... 27 0 1 16.00 16 14 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....ATAGAAATCAATTGCAAGTTACGC.......................................................................................................................... 24 0 1 14.00 14 13 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................CCAATGCCTATAAGTCCGATGGT............................................................. 23 0 1 14.00 14 12 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0
.............................................................TCAAAGCCAATGCCTATAAGTCCGA................................................................. 25 0 1 11.00 11 2 4 1 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....ATAGAAATCAATTGCAAGTTACG........................................................................................................................... 23 0 1 11.00 11 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................ATGCCTATAAGTCCGATGGTCTCC......................................................... 24 0 1 10.00 10 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................ATGCCTATAAGTCCGATGGTCTC.......................................................... 23 0 1 9.00 9 8 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................TCAAAGCCAATGCCTATAAGTCCGATG............................................................... 27 0 1 9.00 9 0 4 1 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................TCAAAGCCAATGCCTATAAGTCCGATGG.............................................................. 28 0 1 9.00 9 5 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATAAGATTGACACAACAGACAACTATGGC 29 0 1 7.00 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATAAGATTGACACAACAGACAA....... 22 0 1 7.00 7 3 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................CCAATGCCTATAAGTCCGATG............................................................... 21 0 1 6.00 6 4 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................ATAAGATTGACACAACAGACA........ 21 0 1 5.00 5 3 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................TCAAAGCCAATGCCTATAAGTCCGAT................................................................ 26 0 1 4.00 4 0 1 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......TAGAAATCAATTGCAAGTTACGCCC........................................................................................................................ 25 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................TCAAAGCCAATGCCTATAAGTCCG.................................................................. 24 0 1 4.00 4 0 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TGGTCTCCATTACAGCACCTGCGC......................................... 24 0 1 4.00 4 3 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATAAGATTGACACAACAGACAACTATC.. 27 1 1 4.00 4 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............TCAATTGCAAGTTACGCCCTTGCACAC................................................................................................................ 27 0 1 3.00 3 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................CCAATGCCTATAAGTCCGATGGTCTCCAT....................................................... 29 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................TCAAAGCCAATGCCTATAAGTCC................................................................... 23 0 1 3.00 3 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................CAATGCCTATAAGTCCGATGGTC............................................................ 23 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATAAGATTGACACAACAGACAACTC.... 25 1 1 3.00 3 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATAAGATTGACACAACAGAC......... 20 0 1 3.00 3 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TAAGATTGACACAACAGACAACT..... 23 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....ATAGAAATCAATTGCAAGTTACGCCCTT...................................................................................................................... 28 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........ATCAATTGCAAGTTACGCCCTTGCACAC................................................................................................................ 28 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................CCAATGCCTATAAGTCCGATGGTCTCCA........................................................ 28 0 1 2.00 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................ATGCCTATAAGTCCGATGGTCT........................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................ATGCCTATAAGTCCGATGGTCTCCATT...................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATAAGATTGACACAACAGACAACA..... 24 1 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TGGTCTCCATTACAGCACCTGCGCC........................................ 25 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....ATAGAAATCAATTGCAAGTTACC........................................................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................ATGCCTATAAGTCCGATGGTCTCCA........................................................ 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TGGTCTCCATTACAGCACCTGCGCCAG...................................... 27 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................CCAATGCCTATAAGTCCGATGGTCC........................................................... 25 1 1 2.00 2 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................ACCAATGCCTATAAGTCCGATGGTC............................................................ 25 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATAAGATTGACACAACAGACAACC..... 24 1 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATAAGATTGACACAACAGACAACTT.... 25 1 1 2.00 2 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................CAATGCCTATAAGTCCGATGGT............................................................. 22 0 1 2.00 2 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........ATCAATTGCAAGTTACGCCCTTGC.................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......TAGAAATCAATTGCAAGTTACGCCCT....................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................GCACACAGGGGCAATCGCCAACGCGGAC.......................................................................................... 28 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATAAGATTGACACAACAGACAACTATA.. 27 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................ATGCCTATAAGTCCGATGGTCTCCAT....................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................ATGCCTATAAGTCCGATGGTCTCCATTAC.................................................... 29 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............TCAATTGCAAGTTACGCCCT....................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TGCCTATAAGTCCGATGGTCTCCATT...................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............TCAATTGCAAGTTACGCCCTTGC.................................................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................ATGCCTATAAGTCCGATGGTC............................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...TAATAGAAATCAATTGCAAGTTACGCCC........................................................................................................................ 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TGGTCTCCATTACAGCACCTGCGCCA....................................... 26 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATAAGATTGACACAACAGAA......... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................CAAAGCCAATGCCTATAAGTCCGATG............................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................AAGATTGACACAACAGACAACTAT... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................GGTCTCCATTACAGCACCTGCGCCAG...................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........AAATCAATTGCAAGTTACGCCCT....................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TCCATTACAGCACCTGCGCCAGCTGAA................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....ATAGAAATCAAGTGCAAGTTACGCCC........................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........ATCAATTGCAAGTTACGCCCTTGCACACA............................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....ATAGAAATCAATTGCAAGTTACGCCCTTA..................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................ATTGACACAACAGACAACTAT... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................ATGCCTATAAGTCCGATGGTCTCCAC....................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TGACACAACAGACAACTATGG. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....ATAGAAATCAATTGCAAGTTACGCCCTAA..................................................................................................................... 29 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TAAGATTGACACAACAGACAAC...... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TAAGATTGACACAACAGACAACTAT... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................CCAATGCCTATAAGTCCGATGGTCTCCAA....................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATAAGATTGACACAACAGAAA........ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................AATATTGACACAACAGACAACT..... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......TAAAGATCAATTGCAAGTTACGCCCC....................................................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................CAATGCCTATAAGTCCGATGGTCTC.......................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............CAATTGCAAGTTACGCCCTTGCACAC................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATAAGATTGACACAACAGACAACTATCC. 28 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........GAAATCAATTGCAAGTTACGCCC........................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............TCAATTGCAAGTTACGCCCTTGCACACAA.............................................................................................................. 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......ATAAATCAATTGCAAGTTACGCCCT....................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................CCAATGCCTATAAGTCCGATGGTCTT.......................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............TCAATTGCAAGTTACGCCC........................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................CTACAGCACCTGCGCCAGCTGA.................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........GAAATCAATTGCAAGTTACGCCCT....................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................AATAAGATTGACACAACAGACAACTAT... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....ATAGAAATCAATTGCAAGTTACGCCCA....................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................CCAATGCCTATAAGTCCGATGGTCGGCAA....................................................... 29 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATAAGATTGACACAACAGACAACGAT... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........AAATCAATTGCAAGTTACGCCC........................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................AAGATTGACACAACAGACAACTATA.. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................CTGCGCCAGCTGAAGACAATAAGA....................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......TAGAAATCAATTCCAAGTTACCCCC........................................................................................................................ 25 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....ATAGAAATCAATTGCAAGTTACAC.......................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....ATAGAAATCAATTGCAACTTACGCCCC....................................................................................................................... 27 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATAAGATTGACACAACAGACCACT..... 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TCCGATGGTCTCCATTACAGC................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TAAGATTGACACAACAGACAACTATG.. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....ATAGAAATCAATTGCAAGTCACG........................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATAAGATTGAGACAACAGACAACTATGG. 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................AAGCCAATGCCTATAAGTCCGATC............................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................CCAATGCCTATAAGTCCGATGGTTTAG......................................................... 27 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TGGTCTCCATTACAGCACC.............................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TCTCCATTACAGCACCTGCG.......................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............TCAATTGCAAGTTACGCCCTTGCA................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATAAGATTGACACAACAGACAAA...... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................CCAATGCCTATAAGTCCGATGGTCTAT......................................................... 27 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CCAACGCGGACTCAAAGCCAATGC............................................................................. 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TGAACACAGGGGCAATCGCCAACGCGGA........................................................................................... 28 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................ATATGCCTATAAGTCCGATGGTCTCCAT....................................................... 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................TCTAAGCCAATGCCTATAAGTCCGA................................................................. 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................CAAAGCCAATGCCTATAA....................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TGCACACAGGGGCAATCGCCAACGCG............................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....GATAGAAATCAATTGCAAGTTACGCC......................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................CCAATGCCTATAAGTCCGATGGTCTTAT........................................................ 28 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........ATCAATTGCAAGTTACCCCC........................................................................................................................ 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................AAAGCCAATGCCTATAAGTCCGATGG.............................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATAAGATTGACACAACAGACAAT...... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TAAGATTGACACAACAGACAACTATGG. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........ATCAATTGCAAGTTACGCCCTTGCAC.................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATAAGATTGACACAACAGACC........ 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................AATGCCTATAAGTCCGATGGTCTCC......................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................ATAAGTCCGATGGTCTCCATTA..................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................CAATGCCTATAAGTCCGATGG.............................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................CCATTACAGCACCTGCGCC........................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........ATCAATTGCAAGTTACGCCCTT...................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......TAGAAATCAATTGCAAGTTACGC.......................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................ATAAGTCCGATGGTCTCCATTACAGC................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TGAAGACAATAAGATTGACACAACAGA.......... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....CATAGAAATCAATTGCAAGTTACGCCCT....................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................AGATTGACACAACAGACAACTATGGC 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TCTCCATTACAGCACCTGCGCCAGCTGA.................................. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................AATGCCTATAAGTCCGATGGTCTC.......................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATAAGATTGACACAACAGACAACTG.... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
AAATAATAGAAATCAATTGCA.................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....AATAGAAATCAATTGCAAGTTACGCCC........................................................................................................................ 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................TTAAAGCCAATGCCTATAAGTCCGATGG.............................................................. 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATAAGATTGACACAACAGACAACTATTC. 28 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATAAGATTGACACAACAGA.......... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................TCAAAGCCAATGCCTATAAG...................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................CCAATGCCTATAAGTCCGATGGTCTCCT........................................................ 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................AATGCCTATAAGTCCGATGGTCTCCA........................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........AATCAATTGCAAGTTACGCCCTTGCACA................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AAAGCCAATGCCTATAAGTCCTA................................................................. 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATAAGATTGACACAACAGACAACTCTGG. 28 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............CAATTGCAAGTTACGCCCT....................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....ATAGAAATCAAGTGCAAGTTACGCC......................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..ATAATAGAAATCAATTGCAAGTTACGCC......................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............TCAATTGCAAGTTACGCCCTTGCACACA............................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TAAGATTGACACAACAGACAACTATCC. 27 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..ATAATAGAAATCAATTGCAAGTTAC............................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................TGCAAGTTACGCCCTTGCACACAGGGG........................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................CAAAGCCAATGCCTATAAGTCCGATGG.............................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................CAAAGCCAATGCCTATAAGTCCGA................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................CAACGCGGACTCAAAGCCAATGCCT........................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CCGATGGTCTCCATTACAGCA................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................CCAATGCCTATAAGTCCGATGGTT............................................................ 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................AGAAGATTGACACAACAGACAACT..... 24 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........ATCAATTGCAAGTTACGCCCTTG..................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................AATCGCCAACGCGGACTCAAAGCC.................................................................................. 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................TCAAAGCCAATGCCTATAAGTC.................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........ATCAATTGCAAGTTACGCCCTTGCACA................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....TATAGAAATCAATTGCAAGTTACG........................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................CCAATGCCTATAAGTCCGATGGCC............................................................ 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....ATAGAAATCAATTGCAAGTTACGCT......................................................................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................GCCAACGCGGACTCAAAGCCAATGCC............................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......TAGAAATCAATTGCAAGTTACG........................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TGCCTATAAGTGCGATGGTCTCC......................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................TGCAAGTTACGCCCTTGCACACAGGGGCA......................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATAGGATTGACACAACAGACAACT..... 24 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......AGAAATCAATTGCAAGTTACGCCC........................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................GCAATCGCCAACGCGGACT......................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................ATGCCTATAAGTCCGATG............................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................AATGCCTATAAGTCCGATGGTCTA.......................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TCGCCAACGCGGACTCAAAGCCAATGC............................................................................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATAAGATTGACACAACAGACAACTGT... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................AAAGCACCTGGGCCAGCTG................................... 19 2 5 0.60 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0
.............................................AATCGCCCACGAGAACTCA....................................................................................... 19 3 11 0.36 4 3 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................AAAGCACCTGGGCCAGCTGG.................................. 20 3 19 0.21 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0
.......................................................................................................CCTGCGCCAACTGAAGAA.............................. 18 2 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................CTAAGTCCGCTGGTGTCCA........................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................ATTACAGCACAAGCGCCCG...................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TTTATTATCTTTAGTTAACGTTCAATGCGGGAACGTGTGTCCCCGTTAGCGGTTGCGCCTGAGTTTCGGTTACGGATATTCAGGCTACCAGAGGTAATGTCGTGGACGCGGTCGACTTCTGTTATTCTAACTGTGTTGTCTGTTGATACCG
**************************************************(((...((((((....((....)).....)))))).)))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060688
160_ovaries_total
 SRR060654
160x9_ovaries_total
 SRR060658
140_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 M027
male body		 SRR060675
140x9_ovaries_total
 SRR060679
140x9_testes_total
 SRR060689
160x9_testes_total
 SRR060683
160_testes_total
 M061
embryo
 SRR060663
160_0-2h_embryos_total
 V047
embryo
 V116
male body		 SRR060656
9x160_ovaries_total
 SRR060655
9x160_testes_total
 SRR060667
160_females_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060657
140_testes_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060681
Argx9_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 V053
head
.......................................................CGCCTGAGTTTCGGTTACGGAT.......................................................................... 22 0 1 228.00 228 24 108 50 2 1 2 0 0 13 6 0 14 3 3 2 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CGCGGTCGACTTCTGTTATTCTAACT................... 26 0 1 205.00 205 115 24 9 1 10 0 13 12 6 0 10 1 1 2 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................TGCGCCTGAGTTTCGGTTACGGAT.......................................................................... 24 0 1 148.00 148 36 71 17 0 0 2 0 0 6 10 0 0 2 4 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GTTGCGCCTGAGTTTCGGTTACGGAT.......................................................................... 26 0 1 131.00 131 64 47 7 0 4 0 1 0 5 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TTGCGCCTGAGTTTCGGTTACGGAT.......................................................................... 25 0 1 120.00 120 52 37 21 0 1 7 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................GCGCCTGAGTTTCGGTTACGGAT.......................................................................... 23 0 1 113.00 113 35 49 17 0 1 1 0 1 1 3 0 1 0 2 1 0 1 0 0 0 0 0 0 0 0 0
..................................................GGTTGCGCCTGAGTTTCGGTTACGGAT.......................................................................... 27 0 1 74.00 74 23 14 8 0 1 28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................GCGGTCGACTTCTGTTATTCTAACT................... 25 0 1 72.00 72 59 4 0 0 2 0 2 4 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................CGGTCGACTTCTGTTATTCTAACT................... 24 0 1 69.00 69 48 10 0 0 3 0 2 1 3 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................GGTCGACTTCTGTTATTCTAACT................... 23 0 1 63.00 63 52 5 3 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TTAGCGGTTGCGCCTGAGTTTCGGTT................................................................................ 26 0 1 61.00 61 3 0 1 30 12 0 11 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GCGCCTGAGTTTCGGTTACGGATATT....................................................................... 26 0 1 51.00 51 46 1 1 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................ACGCGGTCGACTTCTGTTATTCTAACT................... 27 0 1 37.00 37 32 2 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................TAGCGGTTGCGCCTGAGTTTCGGTT................................................................................ 25 0 1 36.00 36 1 1 0 11 11 0 8 3 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................AGCGGTTGCGCCTGAGTTTCGGTT................................................................................ 24 0 1 30.00 30 2 0 1 15 7 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CGCCTGAGTTTCGGTTACGGATATT....................................................................... 25 0 1 30.00 30 26 0 1 0 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................GGACGCGGTCGACTTCTGTTATTCTAACT................... 29 0 1 26.00 26 26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................GCCTGAGTTTCGGTTACGGAT.......................................................................... 21 0 1 25.00 25 10 6 3 0 0 3 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GTCGACTTCTGTTATTCTAACT................... 22 0 1 23.00 23 18 1 0 3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................TGCGCCTGAGTTTCGGTTACGGATATT....................................................................... 27 0 1 22.00 22 20 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................CCTGAGTTTCGGTTACGGAT.......................................................................... 20 0 1 19.00 19 9 2 3 0 0 4 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................CGTTAGCGGTTGCGCCTGAGTTTCGGTT................................................................................ 28 0 1 18.00 18 0 0 0 6 5 0 6 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................GGTTGCGCCTGAGTTTCGGTT................................................................................ 21 0 1 17.00 17 1 0 1 10 2 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CGGTTGCGCCTGAGTTTCGGTT................................................................................ 22 0 1 17.00 17 1 0 0 4 10 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CGCCTGAGTTTCGGTTACGGATAT........................................................................ 24 0 1 15.00 15 13 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GACGCGGTCGACTTCTGTTATTCTAACT................... 28 0 1 14.00 14 11 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................GTTAGCGGTTGCGCCTGAGTTTCGGTT................................................................................ 27 0 1 14.00 14 3 1 0 1 5 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CGGTTGCGCCTGAGTTTCGGTTACGGAT.......................................................................... 28 0 1 14.00 14 11 0 0 0 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................CCTGAGTTTCGGTTACGGATATT....................................................................... 23 0 1 13.00 13 9 0 0 0 0 0 0 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................GCCTGAGTTTCGGTTACGGATATT....................................................................... 24 0 1 13.00 13 12 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................CTGAGTTTCGGTTACGGAT.......................................................................... 19 0 1 9.00 9 2 4 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TTGCGCCTGAGTTTCGGTTACGGA........................................................................... 24 0 1 7.00 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CGCCTGAGTTTCGGTTACGGA........................................................................... 21 0 1 7.00 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TTGCGCCTGAGTTTCGGTTACGGATATT....................................................................... 28 0 1 6.00 6 5 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GTTGCGCCTGAGTTTCGGTTACGGA........................................................................... 25 0 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TCGACTTCTGTTATTCTAACT................... 21 0 1 6.00 6 2 0 1 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................TGCGCCTGAGTTTCGGTTACGGATAT........................................................................ 26 0 1 6.00 6 4 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................GCGGTCGACTTCTGTTATTCTAAC.................... 24 0 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................CGGTTACGGATATTCAGGCTACCAG............................................................ 25 0 1 5.00 5 4 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................GCCTGAGTTTCGGTTACGGATAT........................................................................ 23 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................CGGTCGACTTCTGTTATTCTAAC.................... 23 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................GGTTACGGATATTCAGGCTACCAG............................................................ 24 0 1 4.00 4 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TGCGGTCGACTTCTGTTATTCTAACT................... 26 1 1 4.00 4 1 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................GAGTTTCGGTTACGGATATTCAGGCT................................................................. 26 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CGCGGTCGACTTCTGTTATTC........................ 21 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CGCGGTCGACTTCTGTTATTCTAAC.................... 25 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GCGCCTGAGTTTCGGTTACGGATAT........................................................................ 25 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................TGCGCCTGAGTTTCGGTTACGGA........................................................................... 23 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................GGTCGACTTCTGTTATTCTAAC.................... 22 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................GCGGTCGACTTCTGTTATT......................... 19 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................TGAGTTTCGGTTACGGATATTCAGGCT................................................................. 27 0 1 3.00 3 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................CCTGAGTTTCGGTTACGGATAT........................................................................ 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................TCGGTTGCGCCTGAGTTTCGGTT................................................................................ 23 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TTGCGTCTGAGTTTCGGTTACGGAT.......................................................................... 25 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CGCTGTCGACTTCTGTTATTCTAACT................... 26 1 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................CGGGAACGTCTGTCCCCGTTAGCGGT.................................................................................................. 26 1 1 2.00 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................TGAGTTTCGGTTACGGATATT....................................................................... 21 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................CGGGAACGTGTGTCCCCGTTAGCGGT.................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................CTGAGTTTCGGTTACGGATATTCAGGCT................................................................. 28 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................AGCGCCTGAGTTTCGGTTACGGATATT....................................................................... 27 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GTGCGCCTGAGTTTCGGTTACGGAT.......................................................................... 25 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................GGTTACGGATATTCAGGCTACCA............................................................. 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CGCCTCAGTTTCGGTTACGGAT.......................................................................... 22 1 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................GCGGTTGCGCCTGAGTTTCGGTT................................................................................ 23 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................GAGTTTCGGTTACGGATATTCAGGC.................................................................. 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................TCCTGAGTTTCGGTTACGGAT.......................................................................... 21 1 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CGCCTGAATTTCGGTTACGGAT.......................................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TTGCGCCTGAGTTTCGGTTACGGATAT........................................................................ 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TGTCGACTTCTGTTATTCTAACT................... 23 1 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TTGCGCCTGCGTTTCGGTTACGGAT.......................................................................... 25 1 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................AAAGCGGTTGCGCCTGAGTTTCGGTT................................................................................ 26 2 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................CGGTCGACTTCTGTTATT......................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GTTGCGCCTGAGTTTCGGTT................................................................................ 20 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TTGCGCCTGAGTTTCGGTTACGGATA......................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................AGGTAATGTGGTGCCCGCG......................................... 19 3 16 1.56 25 1 0 0 0 0 0 0 3 0 0 0 0 0 15 0 0 0 0 0 0 1 1 1 1 1 1
..........................................................CTGAGTTTCGGTTACGGATAT........................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.TTATTATCTTTAGTTAACGT.................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GCGCCCGAGTTCCGGTTACGGAT.......................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TTCGGTTACGGATATTCAGGCTACCAG............................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................CCTGAGTTTCGGTTACGGA........................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................TGGTCGACTTCTGTTATTCTAACT................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TCGACTTCTGTTATTCTAAC.................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................AGCGGTCGACTTCTGTTATTCTAA..................... 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................AGCGGTTGCGCCTGAGTTTCGG.................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................GGATATTCAGGCTACCAGAGGTAAT..................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................ATTCAGGCTACCAGAGGTAATGTCG................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................TCGCGGTTGCGCCTGAGTTTCGGTTA............................................................................... 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................TGGTTGCGCCTGAGTTTCGGTTACGGAT.......................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................ATTCAGGCTACCAGAGGTAATGTCGT................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................CGCGCCTGAGTTTCGGTTACGGAT.......................................................................... 24 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GCGCCTGAGTTTCGGTCACGGATATT....................................................................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GTCGACTTCTATTATTCTAACT................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CGCCTGAGTTTCGGTTACGGATC......................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GCGCCCGAGTTTCGGTTACGGAT.......................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TACGCGGTCGACTTCTGTTATTCTAAC.................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................CGACTTCTGTTATTCTAACTGTGT............... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................TGCGCCTGGGTTTCGGTTACGGAT.......................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................TGCGCCTGAGTTTCGGTTACAGAT.......................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GGTGCGCCTGAGTTTCGGTTACGGA........................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................ATTAGCGGTTGCGCCTGAGTTTCGGTT................................................................................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................TGCGCCTGAGTTTCGGTTACGGAC.......................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CGCCTGAGTTTCGGTTGCGGATATT....................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CGCGGTCGACTTCTATTATTCTAACT................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CGCCTGAGTTCCGGTTACGGAT.......................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CACGGTCGACTTCTGTTATTCTAACT................... 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................TGCGCCTGAGTTTCGGTTATGGAT.......................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TTAGCGGTGGCGCCTGAGTTTCGGTT................................................................................ 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TTGCGCCTGAGTTTCGGTTA............................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................TGCGCCTGAGTTTCGGTTACGGATC......................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GCGCCTGAGTTTCGGTTACGGAC.......................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TGGACGCGGTCGACTTCTGTTATT......................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CGCGGTCGCCTTCTGTTATTCTAACT................... 26 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................TCCCCGTTAGCGGTTGCGCCTGAGT....................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GGCTACCAGAGGTAATGTCGTGGA............................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TTCGCGGTTGCGCCTGAGTTTCGGTT................................................................................ 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................CGTTAGCGGTTGCGCCTGAGTT...................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................CGGATATTCAGGCTACCAGAGGTAAT..................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TTGCGCCTGAGTTTCGGTTACGGGT.......................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................CGGTCGACTTCTGTTATTCTAA..................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................TAGCGGTTGCGCTTGAGTTTCGGTT................................................................................ 25 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TTCGGTTACGGATATTCAGGCTACCA............................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................TCGGTTACGGATATTCAGGCTACCA............................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................GCCTGAGTTTCGATTACGGATATT....................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CCGCGGTCGACTTCTGTTATTCTAACT................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................CCCGTTAGCGGTTGCGCCTGAGTTT..................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................GCCTGAGTTTCGGTTACGGA........................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................TGCGCCTGAGTTTCGGTCACGGAT.......................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................CCGGTCGACTTCTGTTATTCTAACT................... 25 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................GTTTCGGTTACGGATATTCAGGCT................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GCGCCTGAGTTTCGGTTACGGA........................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................GTTAGCGGTTGCGCCTGAGTT...................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CTCTGTCGACTTCTGTTATTCTAACT................... 26 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................TAGCGGTTGCGCCTGAGTTTCGGTTA............................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................CGCCTAAGTTTCGGTTACGGAT.......................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................CGGATATTCAGGCTACCAGAGGTAATG.................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................ACGCGGTCGACTTCTGTTATTCTAACTT.................. 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................GGACGCGGTCGACTTCTGTTATTCTAAC.................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CGCCTGAGTTTCGGTTACGCAT.......................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................GGTCGACTTCTGTTATTC........................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CGCGGTCGACTTCTGTTAT.......................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CGCCTGAGTTTCGGCTACGGAT.......................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CGCCTGAGTTTCGGTTACGGATATTGCA.................................................................... 28 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................CGACTTCTGTTATTCTAACT................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TTAGCGGTTGCGACTGAGTTTCGGTT................................................................................ 26 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GACGCGGTCGACTTCTGTTATT......................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................CTATTCAGGCTACCAGAGGTAATGT................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................CAGGCTACCAGAGGTAATGTCGT................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TGCCTGAGTTTCGGTTACGGATATT....................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CGCCTGCGTTTCGGTTACGGAT.......................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................GCGGTCGACTTCTGTTATTC........................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............TAACGTTCAATGCGGGAACGTGTGTCCCC........................................................................................................... 29 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GGTTGCGCCTGATTTTCGGTTACGGAT.......................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................CGTTAGCGGTTGCGCCTGAGTTTCG................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GGTTGCGCCTGAGTTTCGGCTACGGAT.......................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................GTTACGGATATTCAGGCTACCAG............................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GCGCCTGCGTTTCGGTTACGGAT.......................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CGCGGTCTACTTCTGTTATTCTAACT................... 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................GGACGCGGTCGACTTCTGTTATTC........................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GTCGACTTCTGTTATTCTAACTGTGT............... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TTTGCGCCTGAGTTTCGGTTACGGAT.......................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................ATGGTTGCGCCTGAGTTTCGGTT................................................................................ 23 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................ACGCGGTCGACTTCTGTTATTCT....................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................TGTGCCTGAGTTTCGGTTACGGAT.......................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.CTATTATCTTTAGTTAACGTTCAA.............................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CGCCTGATTTTCGGTTACGGAT.......................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CGCCTGAGTCTCGGTTACGGAT.......................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................ACGGATATTCAGGCTACCAGAGGT........................................................ 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GCGCCTGAGTCTCGGTTACGGATATT....................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CTTCTGTTATTCTAACTGTGTTG............. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................GGTCGACTCCTGTTATTCTAACT................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................TGAGTTTCGGTTACGGAT.......................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TGCGGTTGCGCCTGAGTTTCGGTT................................................................................ 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................CGGTTACGGATATTCAGGCTACCAGAG.......................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TCGGTCGACTTCTGTTATTCTAACT................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CGCGGTCGACTTCTGTTATTCTAACTC.................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CGCGGTCGACTTCTGTTATTCTAAGT................... 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................AGTTTCGGTTACGGATATTCAGG................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................AGTTTCGGTTACGGATATTCAGGCTAC............................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CGGTTGCGCCTGAGTTTCGGTTACGGATC......................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................TCGGTTACGGATATTCAGGCT................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................CGTGTGTCCCCGTTAGCGGTTGC............................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................CCGGTCGACTTCTGTTATTCTAA..................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................AGTTTCGGTTACGGATATTCAGGC.................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TTACGGATATTCCGGCTACCA............................................................. 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GGTTGCGCCTGAGTTTCGGTTACGGA........................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................AGTTTCGGTTACGGATATTCAGGCT................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................GAGTTTCGGTTACGGATATT....................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AGGTTGCGCCTGAGTTTCGGTT................................................................................ 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TGGACGCGGTCGACTTCTGTTATTCT....................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................TAGCGGTTGCGCCTGAGTTTCGGT................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GGTTGCTCCTGAGTTTCGGTTACGGAT.......................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................GGTCGACTTTTGTTATTCTAACT................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................CGTGTGTCCCCGTTAGCGGTTGCGCCT........................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GGTTGCGCCTGAGTTTCGGT................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................ACGCGGTCGACTTCTGTTATTCTAAC.................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................CGCGGTTGCGCCTGAGTTTCGGTT................................................................................ 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................ACGCGGTCCACTTCTGTTATTCTAACT................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GCGAATGAGTTTCGGTTACGGAT.......................................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................GCGGTCGGCTTCTGTTATTCTAACT................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TTAGCGGTTGCGCCTGAGTTTCGGTTA............................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GTCGACTTCTGTTATTCTAAC.................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CGCATGAGTTTCGGTTACGGAT.......................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................GCGGTTGCGCCTGAGTTTCGGTTACGGAT.......................................................................... 29 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................TAATGTCGTGGACGCGGTCGACTTC................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................CTGAGTTTCGGTTACGGATATT....................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................CGACTTCTGTTATTCTAACTGTGTTG............. 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GTTGCGCCTGAGTTTCGGTTACGGATC......................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TTGCGCCTGAGTTTCGGTTACGG............................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................CTGTTATTCTAACTGTGTTGTCTGT........ 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................ATTGCGCCTGAGTTTCGGTTACGGAT.......................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GCGCCTGAGTTCCGGTTACGGAT.......................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................AGTGCGGTTGCGCCTGAGTTTCGGTT................................................................................ 26 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CGCGGTCGACTTCTGTTATTCTAA..................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CGGTTGCGCCTGAATTTCGGTT................................................................................ 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TTGCGCCTGATTTCCGGTTACGGAT.......................................................................... 25 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CGCCTGAGTTTCGGTTACGGATA......................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GACGCGGTCGACTTCTGTTATTCAAACT................... 28 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................TGCGCCGGAGTTCCGGTTACGGAT.......................................................................... 24 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................GTCGTGGACGCGGTCGACTTC................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GGTTGCGCCCGAGTTTCGGTT................................................................................ 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GCGCCTGAGTTTCGGCTACGGAT.......................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................GCGGTCGACTTCTATTATTCTAACT................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................CTCGGTTACGGATATTCAGGCTAC............................................................... 24 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CGCGGTCGACTTCTGTTATT......................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................CCGGTTGCGCCTGAGTTTCGGTTACGGAT.......................................................................... 29 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................GGTCGACTTCTGTTATTCTAACTGTG................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................GCGGTCGACTTCTGTTATTCTAA..................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................AGGCTGAGTTTAGGTTACGGAT.......................................................................... 22 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................GCGGTCGACTTCTGTTAT.......................... 18 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GGCTGCCCTAGGTAATGTC.................................................. 19 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_10322:445074-445224 + dvi_639 AAATAATAGAAATCAATTGCAAGTTACGCCCTTGCACA-CAGGGGCAATCGCCAACGCGG----ACTC------AAAGCCAATGCCT------ATAAGTCCGATGGTCTCCATTACAGCACCTGCGCCAGCTGA---AGACAATAAGATTGACACA------------------ACAGACAACT---------AT---------GGC
droMoj3 scaffold_6680:2479044-2479185 + GAACAACAAAAATCAATTGCAAATCACGCCAATGCCAA-CGACAACAACGG-CAACAGTCAGTGCCATGGACAGCAAGTTACCATTA------GAAACTGG------------AACAGCAACGGCGTCAGCTGCGAAA---------GTTCCCACA------------------GCA---------AACGCTGCG---------GCT
droGri2 scaffold_15110:90711-90855 - AAACTACAGAAATCAATTGCAAATGACACCACTGACCG-GAGGTGC------CGATCTTC----ACATGGTCGGCAAATCATCGCCC------CCAGCACAGACACT------TACAGCACCAGCGCAAGCTAAAATC---ACCGACGCGCTCCAA------------------ACTGTCAATT---------TT---------AGC
droWil2 scf2_1100000004511:11328275-11328429 - CCAACAACGTAACCAATTTAATATTACTCATATGCCAG-CTAA---------------GC----CTACTAAGACCAAGTCATCTCCT------ACGACACCAACAGGCTCTACTTCTGCTACACTTACGCCAATTGCC----CCTTTAGCACCGT--TGGCCATTGGGACAACAGCACAAGA-----------AC---------CGC
dp5 XR_group8:1322235-1322394 - CAACAACAAGAACCAGCTGCACATCACGCCCGTACCGG-CAACGGCAACGA-CAGCAGCCG---CCCCAAAGCCCAAGCTATCGCCA------ACGACGCCGACCGTGTCGATCACAACAGCGGCACCAGCGGCGGCG------------------------------------GGCGACGGCACTGGAGCGGACGGAGGCGATGGC
droPer2 scaffold_32:154820-154980 + CAACAACAAGAACCAACTGCACATCACGCCCGTACCGGGCAACGGCAACGA-CAGCAGCCG---CCCCAAAGCCCAAGCTATCGCCA------ACGACGCCGACCGTGTCGATCACAACAGCGGCACCAGCGGCGGCG------------------------------------GGCGACGGCACTGGAGCGGACGGGGGCGATGGC
droAna3 scaffold_13337:2264202-2264370 + CAACAACAAGAATCAGCTCAACATTGGTCCTCTGCCGC-CATC------AGCCGGCAGCC----AGGCGAAGGGCAAATCCTCACCCACTACGACAACACCCATTGTGTCCATCACGGCCCCCCCACCGGCAAACGCC---GCCTCGGGCGCCACAGTT---------------GCCAGCGAATCTGCCAATGAC---------GGA
droBip1 scf7180000396390:113010-113178 + CAACAACAAAAATCAGCTCAACATTAGTCCTTTGCCTC-CATCGGC------CGGCAGCC----AGGCGAAGGGAAAATCCTCACCCACGACGACAACACCCATTGTGTCCATCACGGCGCCTCCTCCCGCCAACGCC---GCCACAGGCGCCACAGTC---------------GCCAACGAACCTGCAAATGAT---------GGG
droKik1 scf7180000302510:855965-856118 + CAACAGCAAGAACCAACTGCACATCACTCCGCTGCCAT-CAGC---CACGAGCACCAATG----TGCCAAAGACCAAGTCGTCGCCA------ACCACGCCGACCGTATCCATCACAGCCCCCGCTGCGGCGGCGCCA---------------ACAGTC---------------AGCAGTGAATCTGGTCCGGAG---------GGA
droFic1 scf7180000454105:119753-119893 + A----------ACAAAATGCACCTTACTCAGCTGCCAT-CGGAGGCAACAGGCAGCAATC----CGCCAAGGGCCAAGACATCGCCC------ATAGCACCAACCGTATCTATCACAGCTCCGGCAACAGTGACGATA------------------------------------GCCAGCGAGCCTCATACAGAT---------GGC
droEle1 scf7180000491249:84175-84316 + TAAT---AAGAACCAAATGCACATTATTTCGCTACCGT-CGTCGCCAACAGTCAGCAATC----CGCCAA------AGACGTCGCCT------ACAACACCGTCAGTGTCCATCACAGCTCCAGCAACGACAACAACA------------------------------------GCCAGCGAGCCTGGCGCAGAG---------GGT
droRho1 scf7180000777885:40673-40814 - TAAC---AGGAACCAAATGCACATCACTCCGTTACCAC-CGCCTGCAATAGTCGGGAATC----ATTCAA------GGACGTCCCCA------ACAACACCAGCAGTGTCCATCACAGCTCCGGCCAGTACGACGTCA------------------------------------GCCAGCGAACACGGGGCAGAG---------GGT
droBia1 scf7180000300910:40781-40928 - CAACAGCAAGAATCAATTGCACATCACTCCATTGTCCC-CGCCGACAGCATGCAGCAATC----TGACAAAGGCTAAAACATCACCA------ACAACACCGAATGTATCCATTCCTGCTTCTGCG---GCGACAGCT------------------------------------GCTAGCGAGCCTGGGACAGAG---------GGT
droTak1 scf7180000415208:5772-5922 - CAACAGCAAGAATCAAATGCACATCTCTCCGCTGTCGC-CGGCGGCAGCAGGCAGCAATC----CGCCAAAGACCAAGACGTCGCCA------ACAACACCGACTGTATCCATTACAGCTCCGTCGACGACGATGCCA------------------------------------GCTAGCGAACCTGGAGCAGAG---------GGT
droEug1 scf7180000409184:37251-37395 - GAACAGCAAGAATCAAATGCACATTTCTCCGTTGTCCC-TAACGGCGACAGGCAGCAATC----TGCCAAAGATTAAGACATTGCCA------ACCGCACCGACTGTATCCATCACAGCTCCAG------CGACGACA------------------------------------ACTGGCGAGACTGGAGCAGAA---------GGC
dm3 chr3L:301059-301200 + TAACAACAAAAATCAATTGCACATCTCTCCGCTATCAC-CAGCGGCAGTAGGTAACAATG----CCCCAAAAACTAAGACATCGCCA------ACAACAACAACCGCATCCATAGCACCTATGATAACGACGACCACA------------------------------------GCTAGCGATCCTG------------------GC
droSim2 3l:271576-271726 + TAACAACAAAAATCAAATGCACATCTCTCCGCTATCAC-CAGCGGCAGTAGGTAACAATG----TCCCAAAAACTAAGACATCGCCA------ACAACGCCGACCGCATCCATAGCACCTATGATAACGACGACCACA------------------------------------GCTGGCGATCCTGGGTCAGAG---------GCC
droSec2 scaffold_2:332695-332845 + TAACAACAAAAATCAAATGCACATCTCTCCGCTATCAC-CAGCGGCAGTAGGTAACAATG----TCCCAAAAACTAAGACATCGCCA------ACAACGCCGACCGCATCGATAGCACCTATGATAACGACGACCACA------------------------------------GCTGGCGATCCTGGGTCAGAG---------GCC
droYak3 3L:280270-280420 + TAACAGCAAAAATCAGATGCACATCTCTCCGTTGTCGC-CAGCGGCAGTAGGAAGCAATC----ACCCAAAGGCCAAGACATCGCCA------ACGACACCGACCGTAAGCATAGCACCTTCGGCCACGACGACCACA------------------------------------GCTGGCGATCCTGGATCAGAG---------GGC
droEre2 scaffold_4784:293486-293636 + TAACAACAAAAATCAGATGCACATCTCCCCGCTATCGC-CAGCGGCAGTAGGAAGCCATC----CGCCAAAAACTAAGACATCGCCA------ACAACACCGACCGTATCCATAGCGCCTCCGCTAACGACGACCACA------------------------------------GCTGGCGATCCTGGGTCAGAG---------GGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AAATAATAGAAATCAATTGCAAGTTACGCCCTTGCACA-CAGGGGCAATCGCCAACGCGG----ACTC------AAAGCCAATGCCT------ATAAGTCCGATGGTCTCCATTACAGCACCTGCGCCAGCTGA---AGACAATAAGATTGACACA------------------ACAGACAACT---------AT---------GGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................ATAAGATTGACACA------------------ACAGACAACT---------..............241103.001032403532000000000000000000001600011000070004100000000000000000000000
..............................................................................................................................................ATAAGATTGACACA------------------ACAGACAACT---------AT---------...26182.00820016000000000000000000000029000160001190000000000000000000000000010
.....ATAGAAATCAATTGCAAGTTACGCCC................................................................................................................................................................................26167.00672060200000000000000000000000000000000000000000000000000000000030
..............................................................................................................................................ATAAGATTGACACA------------------ACAGACAACT---------AT---------GG.28146.00462033000000000000000000000040002000030001100000000000000000000000
..............................................................................CCAATGCCT------ATAAGTCCGATGGTC...................................................................................................24145.00452029230000000010000000000000000000010005100000000000000000001000
..............................................................................................................................................ATAAGATTGACACA------------------ACAGACAACT---------A.............25139.003900120000000000000000000000700010000160003000000000000000000000000
..............................................................................................................................................ATAAGATTGACACA------------------ACAGACAAC........................23133.00331010100000000000000000000040008000080000000000000000000000000010
..............................................................................................................................................ATAAGATTGACACA------------------ACAGACAACT---------AT---------G..27128.0028608100000000000000000000040005000130000000000000000000000000000
..............................................................................CCAATGCCT------ATAAGTCCGATGGTCT..................................................................................................25127.00270022000000000000000000000020001000000002000000000000000000000000
.....ATAGAAATCAATTGCAAGTTACGCCCT...............................................................................................................................................................................27124.00242022000000000000000000000000000000000000000000000000000000000000
.....ATAGAAATCAATTGCAAGTTACGCC.................................................................................................................................................................................25122.00220020000000000000000000000000000000000000000000000000000000000020
..............................................................................CCAATGCCT------ATAAGTCCGATGGTCTC.................................................................................................26119.00191012000000000000000000000010000000010004000000000000000000000000
..............................................................................CCAATGCCT------ATAAGTCCGATGG.....................................................................................................22118.00180016010000000000000000000000000000000000100000000000000000000000
..............................................................................CCAATGCCT------ATAAGTCCGATGGTCTCC................................................................................................27116.00160014000000000000000000000000000000010001000000000000000000000000
.....ATAGAAATCAATTGCAAGTTACGC..................................................................................................................................................................................24114.00140013000000000000000000000000000000000000000000000000000000000010
..............................................................................CCAATGCCT------ATAAGTCCGATGGT....................................................................................................23114.00140012020000000000000000000000000000000000000000000000000000000000
..................................................................TC------AAAGCCAATGCCT------ATAAGTCCGA........................................................................................................25111.0011002000000000000000000000040001000040000000000000000000000000000
.....ATAGAAATCAATTGCAAGTTACG...................................................................................................................................................................................23111.00110011000000000000000000000000000000000000000000000000000000000000
.................................................................................ATGCCT------ATAAGTCCGATGGTCTCC................................................................................................24110.00100010000000000000000000000000000000000000000000000000000000000000
.................................................................................ATGCCT------ATAAGTCCGATGGTCTC.................................................................................................2319.009108000000000000000000000000000000000000000000000000000000000000
..................................................................TC------AAAGCCAATGCCT------ATAAGTCCGATG......................................................................................................2719.009000000000000000000000000040001000040000000000000000000000000000
..................................................................TC------AAAGCCAATGCCT------ATAAGTCCGATGG.....................................................................................................2819.009005000000000000000000000020000000020000000000000000000000000000
..............................................................................................................................................ATAAGATTGACACA------------------ACAGACAACT---------AT---------GGC2917.007007000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................ATAAGATTGACACA------------------ACAGACAA.........................2217.007003000000000000000000000000004000000000000000000000000000000000
..............................................................................CCAATGCCT------ATAAGTCCGATG......................................................................................................2116.006004000000000000000000000000001000000000100000000000000000000000
..............................................................................................................................................ATAAGATTGACACA------------------ACAGACA..........................2115.005003000000001000000000000000001000000000000000000000000000000000
..................................................................TC------AAAGCCAATGCCT------ATAAGTCCGAT.......................................................................................................2614.004000000000000000000000000010000000030000000000000000000000000000
......TAGAAATCAATTGCAAGTTACGCCC................................................................................................................................................................................2514.004004000000000000000000000000000000000000000000000000000000000000
..................................................................TC------AAAGCCAATGCCT------ATAAGTCCG.........................................................................................................2414.004000000000000000000000000020000000020000000000000000000000000000
.......................................................................................................TGGTCTCCATTACAGCACCTGCGC................................................................................2414.004003000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................ATAAGATTGACACA------------------ACAGACAACT---------AT---------C..2714.004102000000000000000000000000001000000000000000000000000000000000
............TCAATTGCAAGTTACGCCCTTGCACA-C.......................................................................................................................................................................2713.003002000000000000000000010000000000000000000000000000000000000000
..............................................................................CCAATGCCT------ATAAGTCCGATGGTCTCCAT..............................................................................................2913.003003000000000000000000000000000000000000000000000000000000000000
..................................................................TC------AAAGCCAATGCCT------ATAAGTCC..........................................................................................................2313.003000000000000000000000000000000000030000000000000000000000000000
...............................................................................CAATGCCT------ATAAGTCCGATGGTC...................................................................................................2313.003003000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................ATAAGATTGACACA------------------ACAGACAACT---------C.............2513.003300000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................ATAAGATTGACACA------------------ACAGAC...........................2013.003200000000000000000000000000000000000001000000000000000000000000
...............................................................................................................................................TAAGATTGACACA------------------ACAGACAACT---------..............2313.003003000000000000000000000000000000000000000000000000000000000000
.....ATAGAAATCAATTGCAAGTTACGCCCTT..............................................................................................................................................................................2813.003003000000000000000000000000000000000000000000000000000000000000
...........ATCAATTGCAAGTTACGCCCTTGCACA-C.......................................................................................................................................................................2813.003003000000000000000000000000000000000000000000000000000000000000
..............................................................................CCAATGCCT------ATAAGTCCGATGGTCTCCA...............................................................................................2812.002000000000000000000000000000000000010001000000000000000000000000
.................................................................................ATGCCT------ATAAGTCCGATGGTCT..................................................................................................2212.002002000000000000000000000000000000000000000000000000000000000000
.................................................................................ATGCCT------ATAAGTCCGATGGTCTCCATT.............................................................................................2712.002002000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................ATAAGATTGACACA------------------ACAGACAACA---------..............2412.002001000000000000000000000000000000000001000000000000000000000000
.......................................................................................................TGGTCTCCATTACAGCACCTGCGCC...............................................................................2512.002001000000000000000000000000001000000000000000000000000000000000
.....ATAGAAATCAATTGCAAGTTACC...................................................................................................................................................................................2312.002002000000000000000000000000000000000000000000000000000000000000
.................................................................................ATGCCT------ATAAGTCCGATGGTCTCCA...............................................................................................2512.002002000000000000000000000000000000000000000000000000000000000000
.......................................................................................................TGGTCTCCATTACAGCACCTGCGCCAG.............................................................................2712.002001000000000000000000000000001000000000000000000000000000000000
..............................................................................CCAATGCCT------ATAAGTCCGATGGTCC..................................................................................................2512.002100000000000000000000000000000000000000100000000000000000000000
..............................................................................................................................................ATAAGATTGACACA------------------ACAGACAACC---------..............2412.002200000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................ATAAGATTGACACA------------------ACAGACAACT---------T.............2512.002000000000000000000000000000001000000001000000000000000000000000
...............................................................................CAATGCCT------ATAAGTCCGATGGT....................................................................................................2212.002001000000000000000000000000000000100000000000000000000000000000
...........ATCAATTGCAAGTTACGCCCTTGC............................................................................................................................................................................2412.002002000000000000000000000000000000000000000000000000000000000000
......TAGAAATCAATTGCAAGTTACGCCCT...............................................................................................................................................................................2612.002002000000000000000000000000000000000000000000000000000000000000
.................................GCACA-CAGGGGCAATCGCCAACGCGG----AC.............................................................................................................................................2812.002101000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................ATAAGATTGACACA------------------ACAGACAACT---------AT---------A..2712.002001000000000000000000000010000000000000000000000000000000000000
.................................................................................ATGCCT------ATAAGTCCGATGGTCTCCAT..............................................................................................2612.002002000000000000000000000000000000000000000000000000000000000000
.................................................................................ATGCCT------ATAAGTCCGATGGTCTCCATTAC...........................................................................................2912.002002000000000000000000000000000000000000000000000000000000000000
............TCAATTGCAAGTTACGCCCT...............................................................................................................................................................................2012.002002000000000000000000000000000000000000000000000000000000000000
..................................................................................TGCCT------ATAAGTCCGATGGTCTCCATT.............................................................................................2612.002002000000000000000000000000000000000000000000000000000000000000
............TCAATTGCAAGTTACGCCCTTGC............................................................................................................................................................................2312.002002000000000000000000000000000000000000000000000000000000000000
.................................................................................ATGCCT------ATAAGTCCGATGGTC...................................................................................................2112.002002000000000000000000000000000000000000000000000000000000000000
...TAATAGAAATCAATTGCAAGTTACGCCC................................................................................................................................................................................2812.002002000000000000000000000000000000000000000000000000000000000000
.......................................................................................................TGGTCTCCATTACAGCACCTGCGCCA..............................................................................2612.002001000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................ATAAGATTGACACA------------------ACAGAA...........................2011.001000000000000000000000000000001000000000000000000000000000000000
...................................................................C------AAAGCCAATGCCT------ATAAGTCCGATG......................................................................................................2611.001000000000000000000000000010000000000000000000000000000000000000
................................................................................................................................................AAGATTGACACA------------------ACAGACAACT---------AT---------...2411.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................GGTCTCCATTACAGCACCTGCGCCAG.............................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.........AAATCAATTGCAAGTTACGCCCT...............................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................TCCATTACAGCACCTGCGCCAGCTGA---A.....................................................................2711.001000000000000000000000000000001000000000000000000000000000000000
...........ATCAATTGCAAGTTACGCCCTTGCACA-CA......................................................................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
.....ATAGAAATCAATTGCAAGTTACGCCCTTA.............................................................................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................ATTGACACA------------------ACAGACAACT---------AT---------...2111.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................ATGCCT------ATAAGTCCGATGGTCTCCAC..............................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................TGACACA------------------ACAGACAACT---------AT---------GG.2111.001001000000000000000000000000000000000000000000000000000000000000
.....ATAGAAATCAATTGCAAGTTACGCCCTAA.............................................................................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................TAAGATTGACACA------------------ACAGACAAC........................2211.001000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................TAAGATTGACACA------------------ACAGACAACT---------AT---------...2511.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................CCAATGCCT------ATAAGTCCGATGGTCTCCAA..............................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................CAATGCCT------ATAAGTCCGATGGTCTC.................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.............CAATTGCAAGTTACGCCCTTGCACA-C.......................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................ATAAGATTGACACA------------------ACAGACAACT---------AT---------CC.2811.001000000000000000000000000000001000000000000000000000000000000000
........GAAATCAATTGCAAGTTACGCCC................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
............TCAATTGCAAGTTACGCCCTTGCACA-CAA.....................................................................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................CCAATGCCT------ATAAGTCCGATGGTCTT.................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
............TCAATTGCAAGTTACGCCC................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
........GAAATCAATTGCAAGTTACGCCCT...............................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................AATAAGATTGACACA------------------ACAGACAACT---------AT---------...2711.001001000000000000000000000000000000000000000000000000000000000000
.....ATAGAAATCAATTGCAAGTTACGCCCA...............................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000010
.........AAATCAATTGCAAGTTACGCCC................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................AAGATTGACACA------------------ACAGACAACT---------AT---------A..2511.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................CTGCGCCAGCTGA---AGACAATAAGA...........................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................TCCGATGGTCTCCATTACAGC........................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................TAAGATTGACACA------------------ACAGACAACT---------AT---------G..2611.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................AAGCCAATGCCT------ATAAGTCCGATC......................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................TGGTCTCCATTACAGCACC.....................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TCTCCATTACAGCACCTGCG.................................................................................2011.001000000000000000000000000010000000000000000000000000000000000000
............TCAATTGCAAGTTACGCCCTTGCA...........................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................ATAAGATTGACACA------------------ACAGACAAA........................2311.001000000000000000000000000000001000000000000000000000000000000000
..............................................................................CCAATGCCT------ATAAGTCCGATGGTCTAT................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
...................................................CCAACGCGG----ACTC------AAAGCCAATGC..........................................................................................................................2411.001100000000000000000000000000000000000000000000000000000000000000
...................................................................C------AAAGCCAATGCCT------ATAA..............................................................................................................1811.001000000000000000000000000000001000000000000000000000000000000000
................................TGCACA-CAGGGGCAATCGCCAACGCG....................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................CCAATGCCT------ATAAGTCCGATGGTCTTAT...............................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................AAAGCCAATGCCT------ATAAGTCCGATGG.....................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................ATAAGATTGACACA------------------ACAGACAAT........................2311.001000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................TAAGATTGACACA------------------ACAGACAACT---------AT---------GG.2711.001001000000000000000000000000000000000000000000000000000000000000
...........ATCAATTGCAAGTTACGCCCTTGCAC..........................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................ATAAGATTGACACA------------------ACAGACC..........................2111.001100000000000000000000000000000000000000000000000000000000000000
................................................................................AATGCCT------ATAAGTCCGATGGTCTCC................................................................................................2511.001000000000000000000000000000000000010000000000000000000000000000
.............................................................................................ATAAGTCCGATGGTCTCCATTA............................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................CAATGCCT------ATAAGTCCGATGG.....................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................CCATTACAGCACCTGCGCC...............................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...........ATCAATTGCAAGTTACGCCCTT..............................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
......TAGAAATCAATTGCAAGTTACGC..................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................ATAAGTCCGATGGTCTCCATTACAGC........................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TGA---AGACAATAAGATTGACACA------------------ACAGA............................2711.001000000000000000000000000000000000100000000000000000000000000000
.................................................................................................................................................AGATTGACACA------------------ACAGACAACT---------AT---------GGC2611.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TCTCCATTACAGCACCTGCGCCAGCTGA---......................................................................2811.001000000000000000000000000000001000000000000000000000000000000000
................................................................................AATGCCT------ATAAGTCCGATGGTCTC.................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................ATAAGATTGACACA------------------ACAGACAACT---------G.............2511.001001000000000000000000000000000000000000000000000000000000000000
AAATAATAGAAATCAATTGCA..........................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
....AATAGAAATCAATTGCAAGTTACGCCC................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................................................ATAAGATTGACACA------------------ACAGACAACT---------AT---------TC.2811.001000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................ATAAGATTGACACA------------------ACAGA............................1911.001000000000000000000000000000001000000000000000000000000000000000
..................................................................TC------AAAGCCAATGCCT------ATAAG.............................................................................................................2011.001000000000000000000000000000000000010000000000000000000000000000
..............................................................................CCAATGCCT------ATAAGTCCGATGGTCTCCT...............................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
................................................................................AATGCCT------ATAAGTCCGATGGTCTCCA...............................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
..........AATCAATTGCAAGTTACGCCCTTGCACA-........................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.............CAATTGCAAGTTACGCCCT...............................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..ATAATAGAAATCAATTGCAAGTTACGCC.................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
............TCAATTGCAAGTTACGCCCTTGCACA-CA......................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................TAAGATTGACACA------------------ACAGACAACT---------AT---------CC.2711.001001000000000000000000000000000000000000000000000000000000000000
..ATAATAGAAATCAATTGCAAGTTAC....................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.................TGCAAGTTACGCCCTTGCACA-CAGGGG..................................................................................................................................................................2711.001000000000000000000000000010000000000000000000000000000000000000
...................................................................C------AAAGCCAATGCCT------ATAAGTCCGATGG.....................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
...................................................................C------AAAGCCAATGCCT------ATAAGTCCGA........................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
....................................................CAACGCGG----ACTC------AAAGCCAATGCCT------..................................................................................................................2511.001100000000000000000000000000000000000000000000000000000000000000
...................................................................................................CCGATGGTCTCCATTACAGCA.......................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................CCAATGCCT------ATAAGTCCGATGGTT...................................................................................................2411.001000000000000000000000000000000000010000000000000000000000000000
...........ATCAATTGCAAGTTACGCCCTTG.............................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
..............................................AATCGCCAACGCGG----ACTC------AAAGCC...............................................................................................................................2411.001000000000000000000000000000000000100000000000000000000000000000
..................................................................TC------AAAGCCAATGCCT------ATAAGTC...........................................................................................................2211.001000000000000000000000000000000000010000000000000000000000000000
...........ATCAATTGCAAGTTACGCCCTTGCACA-........................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.....ATAGAAATCAATTGCAAGTTACGCT.................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000010
..................................................GCCAACGCGG----ACTC------AAAGCCAATGCC.........................................................................................................................2611.001000000000000000000000000000001000000000000000000000000000000000
......TAGAAATCAATTGCAAGTTACG...................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.................TGCAAGTTACGCCCTTGCACA-CAGGGGCA................................................................................................................................................................2911.001000000000000000000000000010000000000000000000000000000000000000
.......AGAAATCAATTGCAAGTTACGCCC................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
............................................GCAATCGCCAACGCGG----ACT............................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................ATGCCT------ATAAGTCCGATG......................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
................................................................................AATGCCT------ATAAGTCCGATGGTCTA.................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
................................................TCGCCAACGCGG----ACTC------AAAGCCAATGC..........................................................................................................................2711.001100000000000000000000000000000000000000000000000000000000000000
droMoj3
GAACAACAAAAATCAATTGCAAATCACGCCAATGCCAA-CGACAACAACGG-CAACAGTCAGTGCCATGGACAGCAAGTTACCATTA------GAAACTGG------------AACAGCAACGGCGTCAGCTGCGAAA---------GTTCCCACA------------------GCA---------AACGCTGCG---------GCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................GTCAGCTGCGAAA---------GTTCCCACA------------------GC...............................2411.001000001
................................................................................ACCATTA------GAAACTGG------------AACA..........................................................................................1911.001100000
.........................................................................................................................CGGCGTCAGCTGCGAAA---------GTTC........................................................2111.001100000
droGri2
AAACTACAGAAATCAATTGCAAATGACACCACTGACCG-GAGGTGC------CGATCTTC----ACATGGTCGGCAAATCATCGCCC------CCAGCACAGACACT------TACAGCACCAGCGCAAGCTAAAATC---ACCGACGCGCTCCAA------------------ACTGTCAATT---------TT---------AGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CCAACAACGTAACCAATTTAATATTACTCATATGCCAG-CTAA---------------GC----CTACTAAGACCAAGTCATCTCCT------ACGACACCAACAGGCTCTACTTCTGCTACACTTACGCCAATTGCC----CCTTTAGCACCGT--TGGCCATTGGGACAACAGCACAAGA-----------AC---------CGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................CTACTAAGACCAAGTCATCTCCT------A.................................................................................................................2411.00101000
...................................................................................................................................................AGCACCGT--TGGCCATTGGGA......................................2011.00101000
.............................................................................................................................................................TGGCCATTGGGACAACAGCACAAG..........................2411.00101000
.....................................................................AAGACCAAGTCATCTCCT------ACG...............................................................................................................2111.00101000
......................................................................................................................................................ACCGT--TGGCCATTGGGACAA...................................2011.00101000
dp5
CAACAACAAGAACCAGCTGCACATCACGCCCGTACCGG-CAACGGCAACGA-CAGCAGCCG---CCCCAAAGCCCAAGCTATCGCCA------ACGACGCCGACCGTGTCGATCACAACAGCGGCACCAGCGGCGGCG------------------------------------GGCGACGGCACTGGAGCGGACGGAGGCGATGGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................GACGGCACTGGAGCGGACGGA.........2112.0020000000002
..................................................................................CGCCA------ACGACGCCGACCGTGTC.................................................................................................2212.0020100100000
...........................GCCCGTACCGG-CAACGGC.................................................................................................................................................................1811.0010100000000
...................................................................................................................CAACAGCGGCACCAGCGGC.........................................................................1911.0010100000000
...............................................................................................................ATCACAACAGCGGCACCAGCGG..........................................................................2211.0010000100000
.............................................................................................................CGATCACAACAGCGGCACCAGCGGC.........................................................................2511.0010100000000
...........................................................................................................GTCGATCACAACAGCGGC..................................................................................1811.0010100000000
..................................................................CCAAAGCCCAAGCTATCGC..........................................................................................................................1911.0010010000000
....................................................................................................................AACAGCGGCACCAGCGGCGGCG------------------------------------GGC..............................2511.0010100000000
..............................................................................CTATCGCCA------ACGACGCCGACCGT....................................................................................................2311.0010000100000
...................................................................................................................................................................................CGGCACTGGAGCGGACGGA.........1911.0010000000001
.....................................................................................................GACCGTGTCGATCACAACAGCGGCACCA..............................................................................2811.0010100000000
...................................................................................GCCA------ACGACGCCGACCGT....................................................................................................1811.0010100000000
.................................................................................................................................................................................GACGGCACTGGAGCGGACGGAGGCGAT...2711.0010000000001
........................................................................CCCAAGCTATCGCCA------ACGACGCC..........................................................................................................2311.0010100000000
droPer2
CAACAACAAGAACCAACTGCACATCACGCCCGTACCGGGCAACGGCAACGA-CAGCAGCCG---CCCCAAAGCCCAAGCTATCGCCA------ACGACGCCGACCGTGTCGATCACAACAGCGGCACCAGCGGCGGCG------------------------------------GGCGACGGCACTGGAGCGGACGGGGGCGATGGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................GACGGCACTGGAGCGGACGGGGGCG.....2513.003300000
......CAAGAACCAACTGCACATCACGCC.................................................................................................................................................................................2413.003300000
...........................................................................................................GTCGATCACAACAGCGGCACC...............................................................................2112.002200000
...........................................................................................................GTCGATCACAACAGCGGCACCAG.............................................................................2312.002200000
...........................................................................................................GTCGATCACAACAGCGGCACCAGCGG..........................................................................2611.001100000
...................................................................................GCCA------ACGACGCCGACCGTGT..................................................................................................2011.001010000
...........................................................................................................GTCGATCACAACAGCGGCACCAGCGGC.........................................................................2711.001100000
.........................................................................CCAAGCTATCGCCA------ACGACGCC..........................................................................................................2211.001010000
.......................................................................................................................AGCGGCACCAGCGGCGGCG------------------------------------GGC..............................2211.001010000
..............................................................................................................GATCACAACAGCGGCACCAGC............................................................................2111.001100000
.....................................................................................CA------ACGACGCCGACCGTGT..................................................................................................1811.001001000
droAna3
CAACAACAAGAATCAGCTCAACATTGGTCCTCTGCCGC-CATC------AGCCGGCAGCC----AGGCGAAGGGCAAATCCTCACCCACTACGACAACACCCATTGTGTCCATCACGGCCCCCCCACCGGCAAACGCC---GCCTCGGGCGCCACAGTT---------------GCCAGCGAATCTGCCAATGAC---------GGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................TGGTCCTCTGCCGC-CATC------AGC...........................................................................................................................................................2111.001100000
..................CAACATTGGTCCTCTGCCGC-C.......................................................................................................................................................................2111.001001000
..................................................GCCGGCAGCC----AGGCGAAGGGCA...................................................................................................................................2211.001000001
........................................ATC------AGCCGGCAGCC----AGGCGAAGG......................................................................................................................................2311.001010000
.................TCAACATTGGTCCTCTGCCG..........................................................................................................................................................................2011.001010000
....................................................................................................................................................................................GAATCTGCCAATGAC---------GGA1811.001010000
......................................................................................................................................................GCCACAGTT---------------GCCAGCGAAT.......................1911.001000001
..................................................................................................................................................................................GCGAATCTGCCAATGAC---------G..1811.001000001
...................................CGC-CATC------AGCCGGCAGCT----...............................................................................................................................................1840.251010000
droBip1
CAACAACAAAAATCAGCTCAACATTAGTCCTTTGCCTC-CATCGGC------CGGCAGCC----AGGCGAAGGGAAAATCCTCACCCACGACGACAACACCCATTGTGTCCATCACGGCGCCTCCTCCCGCCAACGCC---GCCACAGGCGCCACAGTC---------------GCCAACGAACCTGCAAATGAT---------GGGSizeHit CountTotal NormTotal
No Reads
droKik1
CAACAGCAAGAACCAACTGCACATCACTCCGCTGCCAT-CAGC---CACGAGCACCAATG----TGCCAAAGACCAAGTCGTCGCCA------ACCACGCCGACCGTATCCATCACAGCCCCCGCTGCGGCGGCGCCA---------------ACAGTC---------------AGCAGTGAATCTGGTCCGGAG---------GGASizeHit CountTotal NormTotal
No Reads
droFic1
A----------ACAAAATGCACCTTACTCAGCTGCCAT-CGGAGGCAACAGGCAGCAATC----CGCCAAGGGCCAAGACATCGCCC------ATAGCACCAACCGTATCTATCACAGCTCCGGCAACAGTGACGATA------------------------------------GCCAGCGAGCCTCATACAGAT---------GGCSizeHit CountTotal NormTotal
No Reads
droEle1
TAAT---AAGAACCAAATGCACATTATTTCGCTACCGT-CGTCGCCAACAGTCAGCAATC----CGCCAA------AGACGTCGCCT------ACAACACCGTCAGTGTCCATCACAGCTCCAGCAACGACAACAACA------------------------------------GCCAGCGAGCCTGGCGCAGAG---------GGTSizeHit CountTotal NormTotal
No Reads
droRho1
TAAC---AGGAACCAAATGCACATCACTCCGTTACCAC-CGCCTGCAATAGTCGGGAATC----ATTCAA------GGACGTCCCCA------ACAACACCAGCAGTGTCCATCACAGCTCCGGCCAGTACGACGTCA------------------------------------GCCAGCGAACACGGGGCAGAG---------GGTSizeHit CountTotal NormTotal
No Reads
droBia1
CAACAGCAAGAATCAATTGCACATCACTCCATTGTCCC-CGCCGACAGCATGCAGCAATC----TGACAAAGGCTAAAACATCACCA------ACAACACCGAATGTATCCATTCCTGCTTCTGCG---GCGACAGCT------------------------------------GCTAGCGAGCCTGGGACAGAG---------GGTSizeHit CountTotal NormTotal
No Reads
droTak1
CAACAGCAAGAATCAAATGCACATCTCTCCGCTGTCGC-CGGCGGCAGCAGGCAGCAATC----CGCCAAAGACCAAGACGTCGCCA------ACAACACCGACTGTATCCATTACAGCTCCGTCGACGACGATGCCA------------------------------------GCTAGCGAACCTGGAGCAGAG---------GGTSizeHit CountTotal NormTotal
No Reads
droEug1
GAACAGCAAGAATCAAATGCACATTTCTCCGTTGTCCC-TAACGGCGACAGGCAGCAATC----TGCCAAAGATTAAGACATTGCCA------ACCGCACCGACTGTATCCATCACAGCTCCAG------CGACGACA------------------------------------ACTGGCGAGACTGGAGCAGAA---------GGCSizeHit CountTotal NormTotal
No Reads
dm3
TAACAACAAAAATCAATTGCACATCTCTCCGCTATCAC-CAGCGGCAGTAGGTAACAATG----CCCCAAAAACTAAGACATCGCCA------ACAACAACAACCGCATCCATAGCACCTATGATAACGACGACCACA------------------------------------GCTAGCGATCCTG------------------GCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................TATGATAACGACGACCACA------------------------------------GCTAGC...........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................ACGACCACA------------------------------------GCTAGCGAT........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............AATTGCACATCTCTCCGCTATCAC-........................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................ATAACGACGACCACA------------------------------------GCTAGCGATCCT.....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................TATCAC-CAGCGGCAGTAGGTAACAAT....................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................ATCAC-CAGCGGCAGTAGGT..........................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................CGCATCCATAGCACCTATGATAACG..............................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TAACGACGACCACA------------------------------------GCTAGCGATCC......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................AGCGGCAGTAGGTAACAA.....................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.........................................GCGGCAGTAGGTAACAATG----CC.............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
...........................TCCGCTATCAC-CAGCGGCAGTAGGTAAC.......................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TCTCCGCTATCAC-CAGCGGC.................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................TCAC-CAGCGGCAGTAGGTAACAAT....................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................CACA------------------------------------GCTAGCGATCCTG------------------GC1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................TCTCTCCGCTATCAC-CAGCGGCAGC..............................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................TCAC-CAGCGGCAGTAGGTAACAATG----C..............................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....AACAAAAATCAATTGCACATCTCTCC.................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........ATCAATTGCACATCTCTCCGCT..............................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................TATGATAACGACGACCACA------------------------------------GCTAGCGA.........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................GACATCGCCA------ACAACAACAACCGCATCCA...............................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................G----CCCCAAAAACTAAGACATCGC..........................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....ACAAAAATCAATTGCACATCTCTCCGC...............................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TGATAACGACGACCACA------------------------------------GCTAGCGAT........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................TGCACATCTCTCCGCTATCAC-CAGCGGCAG...............................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................ACCTATGATAACGACGACCACA------------------------------------GC...............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................CCAAAAACTAAGACATCGCCA------..................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................CCGCATCCATAGCACCTATGATA.................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................CCGCATCCATAGCACCTATGATAAC...............................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CTATCAC-CAGCGGCAGTAG............................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................ATGATAACGACGACCACA------------------------------------GCTAGCGATC.......................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................CAC-CAGCGGCAGTAGGTAACA......................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CAAAAATCAATTGCACATCTCTCCGC...............................................................................................................................................................................2611.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................TCCATAGCACCTATGATAACGACGACCAC......................................................................2911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................ACATCGCCA------ACAACAACAA........................................................................................................1921.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.................TGCACATCTCTCCGCTATCAC-C.......................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................ACCGCATCCATAGCACCTATGATAACGA.............................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................AGCGGCAGTAGGTAACAATG----CCCCAAA........................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................GACCACA------------------------------------GCTAGCGATAT......................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TAACAACAAAAATCAAATGCACATCTCTCCGCTATCAC-CAGCGGCAGTAGGTAACAATG----TCCCAAAAACTAAGACATCGCCA------ACAACGCCGACCGCATCCATAGCACCTATGATAACGACGACCACA------------------------------------GCTGGCGATCCTGGGTCAGAG---------GCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................TCAC-CAGCGGCAGTAGGTAACAATG----TC.............................................................................................................................................2711.00100000000010000000
.............................CGCTATCAC-CAGCGGCAGTAGGTAACAA.....................................................................................................................................................2811.00100000000000010000
....................................................................................................................................................................................GATCCTGGGTCAGAG---------GCC1811.00100100000000000000
......................................................................................................................CTATGATAACGACGACCACA------------------------------------GCTGGCG..........................2711.00100000000001000000
.......................................................................................................................................ACA------------------------------------GCTGGCGATCCTGGGTCAGAG---------GC.2611.00100000000001000000
...................................................................................................................CACCTATGATAACGACGAC.........................................................................1911.00100100000000000000
..............................................................................................................CATAGCACCTATGATAACGACG...........................................................................2211.00101000000000000000
droSec2
TAACAACAAAAATCAAATGCACATCTCTCCGCTATCAC-CAGCGGCAGTAGGTAACAATG----TCCCAAAAACTAAGACATCGCCA------ACAACGCCGACCGCATCGATAGCACCTATGATAACGACGACCACA------------------------------------GCTGGCGATCCTGGGTCAGAG---------GCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................CAC-CAGCGGCAGTAGGTAACAAT....................................................................................................................................................2311.0010010
droYak3
TAACAGCAAAAATCAGATGCACATCTCTCCGTTGTCGC-CAGCGGCAGTAGGAAGCAATC----ACCCAAAGGCCAAGACATCGCCA------ACGACACCGACCGTAAGCATAGCACCTTCGGCCACGACGACCACA------------------------------------GCTGGCGATCCTGGATCAGAG---------GGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................ATAGCACCTTCGGCCACGACGAC.........................................................................2311.00100100000000
.................................................................................................................................................................................GGCGATCCTGGATCAGAG---------...1811.00101000000000
droEre2
TAACAACAAAAATCAGATGCACATCTCCCCGCTATCGC-CAGCGGCAGTAGGAAGCCATC----CGCCAAAAACTAAGACATCGCCA------ACAACACCGACCGTATCCATAGCGCCTCCGCTAACGACGACCACA------------------------------------GCTGGCGATCCTGGGTCAGAG---------GGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................CGCCA------ACAACACCGACCGTATCCA...............................................................................................2411.0011000000
.............CAGATGCACATCTCCCCGCTATCGC-C.......................................................................................................................................................................2611.0011000000
....................................................................................................................GCCTCCGCTAACGACGACCA.......................................................................2011.0011000000
.................................................................................TCGCCA------ACAACACCGACCGTATC.................................................................................................2311.0011000000
...................................................................................GCCA------ACAACACCGACCGTATCC................................................................................................2211.0010100000

Generated: 05/19/2015 at 10:48 AM