dvi_6340

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CTTGTAGCTAATAAATAGTATATATAGATCGACGTGCCGAAGATCTTCGTTCCTTTTTTTCATTTTACTTCATTATATTTAATATAACTAAACGTCTACTGTATACGTTATACTTGTGGATAAAAGTAAAATAAAATTTACGTACATCCTTCATTTATTTATGTAAAATAATTGCTTGTTTATGTATTATTTCTTTTACAGAATCTGGTCTTAACGTGCTAGACTGTCCTGATAATTTAGTATCGTCTCTT ************************************************...........(((((((((..((((((...))))))......((((((.(((((...)))))..))))))..))))))))).((((.((((((.((....((.((((((.....)))))).))...)).))))))..)))).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060677 Argx9_ovaries_total	SRR060682 9x140_0-2h_embryos_total	V053 head	SRR060684 140x9_0-2h_embryos_total	SRR1106727 larvae
...........................................................................................................................................................................................................................TAGACTGTCCTGATAATTTAGTATCGTC....	28	0	1	1.00	1	1	0	0	0	0
.............................................................................................................................................................................................................................GACTGTCCTGATAATTTAGTATA.......	23	1	1	1.00	1	0	1	0	0	0
...........TAAATTGTATAGATGGATCGAC..........................................................................................................................................................................................................................	22	3	3	0.33	1	0	0	1	0	0
................................................................................................................CTTGTGGATAAAAGGATAG........................................................................................................................	19	3	20	0.05	1	0	0	0	1	0
....................................CCGAAGATCTTGGGTGCT.....................................................................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	1

GAACATCGATTATTTATCATATATATCTAGCTGCACGGCTTCTAGAAGCAAGGAAAAAAAGTAAAATGAAGTAATATAAATTATATTGATTTGCAGATGACATATGCAATATGAACACCTATTTTCATTTTATTTTAAATGCATGTAGGAAGTAAATAAATACATTTTATTAACGAACAAATACATAATAAAGAAAATGTCTTAGACCAGAATTGCACGATCTGACAGGACTATTAAATCATAGCAGAGAA ************************************************...........(((((((((..((((((...))))))......((((((.(((((...)))))..))))))..))))))))).((((.((((((.((....((.((((((.....)))))).))...)).))))))..)))).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V053 head	SRR060687 9_0-2h_embryos_total	SRR060666 160_males_carcasses_total	M047 female body
...............................................GCAAGGAAGAAAAGTAAGAT........................................................................................................................................................................................	20	2	1	1.00	1	1	0	0	0
.............................................CAGCTAGGAAGAAAAGTAAAAT........................................................................................................................................................................................	22	3	2	0.50	1	1	0	0	0
...................................................................................................................CGCCTAGTTTCATTTTATTT....................................................................................................................	20	2	2	0.50	1	0	1	0	0
.............................................GAGCTAGGAAGAAAAGTAAAAT........................................................................................................................................................................................	22	3	3	0.33	1	1	0	0	0
..........................................TAGAGGCAAGGTAAAATAGTA............................................................................................................................................................................................	21	3	4	0.25	1	0	0	1	0
..............................................AGGTAGGAAGAAAAGTAAAAT........................................................................................................................................................................................	21	3	8	0.13	1	1	0	0	0
..............................................AGCTAGGAAGAAAAGGAAAAT........................................................................................................................................................................................	21	3	11	0.09	1	1	0	0	0
..........................................TAGAATGAAGGAAAAAACGTA............................................................................................................................................................................................	21	3	17	0.06	1	0	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_12875:12046854-12047104 -	dvi_6340	CTTGTA--GCT-----AATAAATAGTATATATAG------------ATCGACGTGCCGAAG-ATC----------------TTCGTTCCTTTTTTTCATTTTACTTCATTATATTTAATATAACTAAACGTCTA-----------------------------CTGTATACGTTATACTTGTGGATAAA------AGTAAAATAAAATTTACGTACATCC---TTCATTTATTTATGTAAAATAATTGCTTGTTTATGT-ATTA-TTT--CTTTTACAGAAT------CTGGTCTTAACGTGCT-AGACTGTCCTGATAAT--------------------------------------------------------------------T-------T--AGTATCGTCTCTT-----------------------
droMoj3	scaffold_6496:14842012-14842108 -		TTATTTAATT-----------------------------------------------------------T-AATAACATACTT---TGCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTC-T-AA-TC--TCTTTCTAGAAT------CTGGACTTAACGTGCT-AGACTGTCCCGATAAT--------------------------------------------------------------------T-------T--AGTATCGTCTCTT-----------------------
droGri2	scaffold_15245:11918596-11918737 -		TTTTGC--ATTAAATCAAAGTATCACATTTAATT------------ACATTCATA-AAATGAGATTTATCAAATGATT---CTCTTTATTTTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------C-A-TT-TT--TAATTTTAGAAT------CTGGACTGAGCGTGCT-AGACTGCCCTGATAAT--------------------------------------------------------------------T-------T--AGTATCGTCTCTT-----------------------
droWil2	scf2_1100000004513:5002682-5002778 -		TTAATT--T----------------------------------------------------------ATT-AATGGGAAATTTCGTTACCTTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC-TT--TCGTTTCAGAAT------CTGGCCTTAGCGTTCT-TGACTGCCCGGATAAT--------------------------------------------------------------------T-------T--AGTGTCATCTCTA-----------------------
dp5	3:7643711-7643779 -		TGTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-TT--TTTTTCCAGAAT------CTGGACTTACTGGGCT-TGACTGCCCAGATAAC--------------------------------------------------------------------T-------T--AGTGTCATCCCTA-----------------------
droPer2	scaffold_2:7843295-7843431 -		GGTTGA--ATAAA--CAATAAAATACATACATAT------------GTACTCGTACAAACGTATATTCACACCTGTTT-----CCCCATCTGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-TT--TTTTTCCAGAAT------CTGGACTTACTGGGCT-TGACTGCCCAGATAAC--------------------------------------------------------------------T-------T--AGTGTCATCCCTA-----------------------
droAna3	scaffold_13266:14447600-14447693 +		CCTACA--TTT--------------------------------------------------------ATT-AATA---T-------TACCCATTAC-----------------------------------------------------------------------------------------CA------------------------------------------------------------------------T--ATA-TT--TCTTTGCAGAAT------CTGGCCTAAGCGTGCT-TGACTGTCCAGATAAC--------------------------------------------------------------------T-------T--AGTGTCTTCCCTT-----------------------
droBip1	scf7180000396428:389156-389284 -		GATAGA--CATTATACAAAGTTT----------ATTCTTGTCGCCT---------------CGGTTTATT-AATA---T-------TATCCATTAC-----------------------------------------------------------------------------------------CA----------------------------------------------------------------------------TA-TT--TCTTTGCAGAACCTGTCCCTGGGCTTAGCGTGCT-TGACTGTCCAGATAAC--------------------------------------------------------------------T-------T--AGTGTCTTCCCTT-----------------------
droKik1	scf7180000302685:921075-921254 -		ATTCAA--ATTTA--TTGTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAATACCTTTTTTAGGGCTTATTTTATTTTTGTTATTAAGAAAAGGTATATATCCTTTTATTTATTTTTAATATTTAATAATTATTAATTATTCTTAATATTTATTAAATTATTTATTTATTTCCTTGTATTTTTTTTTAATTCTTTCATAATATTAAAT
droFic1	scf7180000453858:1692997-1693053 -		T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGAAT------CTGGGCTTAGCGTACT-CGACTGCCCAGATAAC--------------------------------------------------------------------T-------T--AGTGTCTTCCCTT-----------------------
droEle1	scf7180000491249:1716201-1716348 -		TTTTAT--GTTGC-------------------------------CT------------------------------------------------------------------------------------TAATATAATCAAAAAAAGGATCTAAAAACTTTGTAATATTTGTAATGCTTATAATTATAGTGTACTTTAAAATATAACAGATTTAAAATAGTTTATTTTTATTTTGTT----------------------------------------------------------AAGATATT-TGCTTGTTT-----------------------------------------------------------------------------------------ATTTATTTTT-----------------------
droRho1	scf7180000774050:21685-21741 +		T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGAAT------CAGGGCTTAGCGTCCT-CGACTGCCCAGATAAC--------------------------------------------------------------------T-------T--AGTGTCTTCCCTC-----------------------
droBia1	scf7180000302143:488551-488607 -		T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGAAT------CTGGGCTTAGCGTGCT-CGACTGCCCAGATAAC--------------------------------------------------------------------T-------T--AGTGTCTTCCCTC-----------------------
droTak1	scf7180000414497:8862-8972 +		AATATA--TAT------------------------------------------------------------------------------------------------------------------ACCCTTTTACTCTACGAGTAACGGGTAT---------------------------------AAA------AATAAAATATAGCTCGTATGTCTTA---CTTGTTTCCTAAAATAA-------------------------------------------------------------------ATTAATTTTTTGAT--------------------------------------------------------------------T-------T--TGAAGTTTTTTTT-----------------------
droEug1	scf7180000409464:326927-326984 -		TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGAAT------CTGGGCTTAGCGTGCT-GGACTGCCCAGATAAC--------------------------------------------------------------------T-------T--AGTGTCTTCCCTC-----------------------
dm3	chr2R:19953787-19953843 -		T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGAAT------CTGGGCTTAGCGTGCT-CGACTGCCCAGATAAC--------------------------------------------------------------------T-------T--AGTGTCTTCCCTC-----------------------
droSim2	3l:23174252-23174375 +		ATAAAT--TTTTA--------------------TTTTCTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTTTTATTTTTATAAAATATTTATTTCTCAATGT-AATG-TCTTCTTTTTGGAAAAT------GTATGTTTTAAATTAC-AG-TAGTTATAATAAT--------------------------------------------------------------------T-------TCCCTTGTATTTACTT-----------------------
droSec2	scaffold_64:65771-65894 +		ATAAAT--TTTTA--------------------TTTTCTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTTTTATTTTTATAAAATATTTATTTCTCAATGT-AATG-TCTTCTTTTTGGAAAAT------TTATGTTTTAAATTAC-AG-TAGTTATAATAAT--------------------------------------------------------------------T-------TCCCTTGTATTTACTT-----------------------
droYak3	2R:19932650-19932706 -		T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGAAT------CTGGGCTTAGCGTGCT-CGACTGCCCAGATAAC--------------------------------------------------------------------T-------T--AGTGTCTTCCCTC-----------------------
droEre2	scaffold_4845:21329044-21329100 -		T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGAAT------CTGGGCTGAGCGTGCT-CGACTGCCCAGATAAC--------------------------------------------------------------------T-------T--AGTGTCTTCCCTC-----------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

CTTGTA--GCT-----AATAAATAGTATATATAG------------ATCGACGTGCCGAAG-ATC----------------TTCGTTCCTTTTTTTCATTTTACTTCATTATATTTAATATAACTAAACGTCTA-----------------------------CTGTATACGTTATACTTGTGGATAAA------AGTAAAATAAAATTTACGTACATCC---TTCATTTATTTATGTAAAATAATTGCTTGTTTATGT-ATTA-TTT--CTTTTACAGAAT------CTGGTCTTAACGTGCT-AGACTGTCCTGATAAT--------------------------------------------------------------------T-------T--AGTATCGTCTCTT-----------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...............................................................................................................................................................................................................................................................................................................T-AGACTGTCCTGATAAT--------------------------------------------------------------------T-------T--AGTATCGTC...........................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................GACTGTCCTGATAAT--------------------------------------------------------------------T-------T--AGTATA..............................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TTATTTAATT-----------------------------------------------------------T-AATAACATACTT---TGCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTC-T-AA-TC--TCTTTCTAGAAT------CTGGACTTAACGTGCT-AGACTGTCCCGATAAT--------------------------------------------------------------------T-------T--AGTATCGTCTCTT-----------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

TTTTGC--ATTAAATCAAAGTATCACATTTAATT------------ACATTCATA-AAATGAGATTTATCAAATGATT---CTCTTTATTTTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------C-A-TT-TT--TAATTTTAGAAT------CTGGACTGAGCGTGCT-AGACTGCCCTGATAAT--------------------------------------------------------------------T-------T--AGTATCGTCTCTT-----------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

TTAATT--T----------------------------------------------------------ATT-AATGGGAAATTTCGTTACCTTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC-TT--TCGTTTCAGAAT------CTGGCCTTAGCGTTCT-TGACTGCCCGGATAAT--------------------------------------------------------------------T-------T--AGTGTCATCTCTA-----------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............................................................................................................................................................................................................................................................................................................CT-TGACTGCCCGGATAAT--------------------------------------------------------------------T-------T--AGTGT...............................	25	1	3.00	3	0	0	2	1	0
....................................................................................................................................................................................................................................................................................................................CTGCCCGGATAAT--------------------------------------------------------------------T-------T--AGTGT...............................	20	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................GACTGCCCGGATAAT--------------------------------------------------------------------T-------T--AGT.................................	20	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................CT-TGACTGCCCGGATAAT--------------------------------------------------------------------T-------T--AGTGTCAT............................	28	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................AAT------CTGGCCTTAGCGTTCT-TGA................................................................................................................................	22	1	1.00	1	0	0	1	0	0

dp5

TGTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-TT--TTTTTCCAGAAT------CTGGACTTACTGGGCT-TGACTGCCCAGATAAC--------------------------------------------------------------------T-------T--AGTGTCATCCCTA-----------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................GCT-TGACTGCCCAGATAAC--------------------------------------------------------------------T-------T--AGT.................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................GATAAC--------------------------------------------------------------------T-------T--AGTGTCATCCCTA-----------------------	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

GGTTGA--ATAAA--CAATAAAATACATACATAT------------GTACTCGTACAAACGTATATTCACACCTGTTT-----CCCCATCTGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-TT--TTTTTCCAGAAT------CTGGACTTACTGGGCT-TGACTGCCCAGATAAC--------------------------------------------------------------------T-------T--AGTGTCATCCCTA-----------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

CCTACA--TTT--------------------------------------------------------ATT-AATA---T-------TACCCATTAC-----------------------------------------------------------------------------------------CA------------------------------------------------------------------------T--ATA-TT--TCTTTGCAGAAT------CTGGCCTAAGCGTGCT-TGACTGTCCAGATAAC--------------------------------------------------------------------T-------T--AGTGTCTTCCCTT-----------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................................................................................................................................................................................................................................................................................GACTGTCCAGATAAC--------------------------------------------------------------------T-------T--AGTGT...............................	22	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................GCT-TGACTGTCCAGATAAC--------------------------------------------------------------------T-------T--....................................	21	1	1.00	1	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................TGTCCAGATAAC--------------------------------------------------------------------T-------T--AGTGT...............................	19	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................GTGCT-TGACTGTCCAGATAAC--------------------------------------------------------------------T-------.......................................	22	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................CTAAGCGTGCT-TGACTGTCCAGA.......................................................................................................................	23	1	1.00	1	0	0	0	0	1	0

droBip1

GATAGA--CATTATACAAAGTTT----------ATTCTTGTCGCCT---------------CGGTTTATT-AATA---T-------TATCCATTAC-----------------------------------------------------------------------------------------CA----------------------------------------------------------------------------TA-TT--TCTTTGCAGAACCTGTCCCTGGGCTTAGCGTGCT-TGACTGTCCAGATAAC--------------------------------------------------------------------T-------T--AGTGTCTTCCCTT-----------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATTCAA--ATTTA--TTGTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAATACCTTTTTTAGGGCTTATTTTATTTTTGTTATTAAGAAAAGGTATATATCCTTTTATTTATTTTTAATATTTAATAATTATTAATTATTCTTAATATTTATTAAATTATTTATTTATTTCCTTGTATTTTTTTTTAATTCTTTCATAATATTAAAT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGAAT------CTGGGCTTAGCGTACT-CGACTGCCCAGATAAC--------------------------------------------------------------------T-------T--AGTGTCTTCCCTT-----------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTTTAT--GTTGC-------------------------------CT------------------------------------------------------------------------------------TAATATAATCAAAAAAAGGATCTAAAAACTTTGTAATATTTGTAATGCTTATAATTATAGTGTACTTTAAAATATAACAGATTTAAAATAGTTTATTTTTATTTTGTT----------------------------------------------------------AAGATATT-TGCTTGTTT-----------------------------------------------------------------------------------------ATTTATTTTT-----------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGAAT------CAGGGCTTAGCGTCCT-CGACTGCCCAGATAAC--------------------------------------------------------------------T-------T--AGTGTCTTCCCTC-----------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGAAT------CTGGGCTTAGCGTGCT-CGACTGCCCAGATAAC--------------------------------------------------------------------T-------T--AGTGTCTTCCCTC-----------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AATATA--TAT------------------------------------------------------------------------------------------------------------------ACCCTTTTACTCTACGAGTAACGGGTAT---------------------------------AAA------AATAAAATATAGCTCGTATGTCTTA---CTTGTTTCCTAAAATAA-------------------------------------------------------------------ATTAATTTTTTGAT--------------------------------------------------------------------T-------T--TGAAGTTTTTTTT-----------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGAAT------CTGGGCTTAGCGTGCT-GGACTGCCCAGATAAC--------------------------------------------------------------------T-------T--AGTGTCTTCCCTC-----------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGAAT------CTGGGCTTAGCGTGCT-CGACTGCCCAGATAAC--------------------------------------------------------------------T-------T--AGTGTCTTCCCTC-----------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................................................................................................................................................................................................................................................................................AAT------CTGGGCTTAGCGTGCT-C..................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................AT------CTGGGCTTAGCGTGCT-...................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................TTAGCGTGCT-CGACTGCCCAG........................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
..................................................................................................................................................................................................................................................................................................GGGCTTAGCGTGCT-CGACTGC............................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................CTGCCCAGATAAC--------------------------------------------------------------------T-------T--AGTGTC..............................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................T------CTGGGCTTAGCGTGCT-CGACTGCC...........................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................CGTGCT-CGACTGCCCAGATAAC--------------------------------------------------------------------T-------T--AG..................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................GCCCAGATAAC--------------------------------------------------------------------T-------T--AGTGTCTTA...........................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........................................................................................................................................................................................................................................................................................AT------CTGGGCTTAGCGTGCT-CG.................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................CCCAGATAAC--------------------------------------------------------------------T-------T--AGTGTCTT............................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................TGCAGAAT------CTGGGCTTAGCGTTT.....................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................AAT------CTGGGCTTAGCGTGCT-CGACTGC............................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................T------CTGGGCTTAGCGTGCT-C..................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ATAAAT--TTTTA--------------------TTTTCTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTTTTATTTTTATAAAATATTTATTTCTCAATGT-AATG-TCTTCTTTTTGGAAAAT------GTATGTTTTAAATTAC-AG-TAGTTATAATAAT--------------------------------------------------------------------T-------TCCCTTGTATTTACTT-----------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................................................................................................................................................................................................................................................................................................TAC-AG-TAGTTATAATAAT--------------------------------------------------------------------...............................................	18	20	2.15	43	0	0	0	0	0	43	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................T-AATG-TCTTCTTTTTGGAAAAT------GTA.................................................................................................................................................	25	7	1.86	13	0	0	0	0	0	0	0	1	3	4	5	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................T-AATG-TCTTCTTTTTGGAA.............................................................................................................................................................	19	20	1.85	37	0	0	0	0	35	0	1	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................T-AATG-TCTTCTTTTTGGAAAA...........................................................................................................................................................	21	20	1.80	36	0	0	0	0	0	33	0	1	0	0	2	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................TGTTTTAAATTAC-AG-TAGTTATAATAA....................................................................................................................	27	20	1.45	29	0	0	0	0	0	0	4	3	10	12	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TTATTTCTCAATGT-AATG-TCTTCTT....................................................................................................................................................................	25	20	1.30	26	0	0	0	0	0	26	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................TATGTTTTAAATTAC-AG-TAGTTATAA.......................................................................................................................	26	20	1.05	21	0	0	0	0	0	0	3	8	8	0	0	0	2	0	0	0	0
...................................TTCTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTTTTATTTTTATAAAA..................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TATAAAATATTTATTTCTCAATGT-A...............................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TATAAAATATTTATTTCTCAATG..................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................TCTCAATGT-AATG-TCTTCTTTTTGGA..............................................................................................................................................................	26	20	0.70	14	0	0	0	0	0	0	0	1	4	9	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................TTTCTCAATGT-AATG-TCTTCTTTTTGGA..............................................................................................................................................................	28	20	0.60	12	0	0	0	0	0	0	0	4	5	3	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................TGT-AATG-TCTTCTTTTTGGAAAAT------GTA.................................................................................................................................................	27	7	0.57	4	0	0	0	0	0	0	1	0	2	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTTGGAAAAT------GTATGTTTTAAATT......................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TTCTCAATGT-AATG-TCTTCTTTTTGGA..............................................................................................................................................................	27	20	0.50	10	0	0	0	0	0	0	3	1	5	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TATAAAATATTTATTTCTCAATGA-................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................TGTTTTAAATTAC-AG-TAGTTATAAT......................................................................................................................	25	20	0.45	9	0	0	0	0	0	0	1	0	3	5	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................T-AATG-TCTTCTTTTTGGA..............................................................................................................................................................	18	20	0.40	8	0	0	0	0	0	0	0	4	1	2	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................TGTTTTAAATTAC-AG-TAGTTATAA.......................................................................................................................	24	20	0.40	8	0	0	0	0	0	0	0	3	5	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................T-AATG-TCTTCTTTTTGGAAA............................................................................................................................................................	20	20	0.35	7	0	0	0	0	0	0	0	0	1	2	4	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................G-TCTTCTTTTTGGAAAAT------GTA.................................................................................................................................................	21	7	0.29	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................TGTTTTAAATTAC-AG-TAGTTATA........................................................................................................................	23	20	0.25	5	0	0	0	0	0	0	1	3	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TATTTCTCAATGT-AATG-TCTTCTTTT..................................................................................................................................................................	26	20	0.20	4	0	0	0	0	0	0	0	2	0	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................T------GTATGTTTTAAATTAC-AG-TAGTTATAA.......................................................................................................................	28	6	0.17	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................TGTTTTAAATTAC-AG-TAGTTATAATA.....................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................TGT-AATG-TCTTCTTTTTGGA..............................................................................................................................................................	20	20	0.15	3	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TATTTCTCAATGT-AATG-TCTTCTTT...................................................................................................................................................................	25	20	0.15	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................TCAATGT-AATG-TCTTCTTTTTGGAAAA...........................................................................................................................................................	27	20	0.15	3	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................TGTTTTAAATTAC-AG-TAGTTATAATAAT--------------------------------------------------------------------...............................................	28	20	0.15	3	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................GT-AATG-TCTTCTTTTTGGAAAAT------GTA.................................................................................................................................................	26	7	0.14	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................TG-TCTTCTTTTTGGAAAAT------GTATGT..............................................................................................................................................	25	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................TG-TCTTCTTTTTGGAAAAT------GTATGTT.............................................................................................................................................	26	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TCTTCTTTTTGGAAAAT------GTA.................................................................................................................................................	20	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................CTTCTTTTTGGAAAAT------GTATG...............................................................................................................................................	21	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TTTATTTCTCAATGT-AATG-TCTTCTT....................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TTTATTTCTCAATGT-AATG-TCTTCTTT...................................................................................................................................................................	27	20	0.10	2	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................ATTTCTCAATGT-AATG-TCTTCTTTTTGGA..............................................................................................................................................................	29	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................TCAATGT-AATG-TCTTCTTTTTGGA..............................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................T-AATG-TCTTCTTTTTGG...............................................................................................................................................................	17	20	0.10	2	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................TGTTTTAAATTAC-AG-TAGTTATAATAAT--------------------------------------------------------------------T-------.......................................	29	20	0.10	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................T-AATG-TCTTCTTTTTGGAAAAT------....................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................TTTCTCAATGT-AATG-TCTTCTTTTT.................................................................................................................................................................	25	20	0.10	2	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................TAAATTAC-AG-TAGTTATAATAAT--------------------------------------------------------------------T-------.......................................	24	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TTATTTCTCAATGT-AATG-TCTTCTTT...................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................TGTTTTAAATTAC-AG-TAGTTATAAA......................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................TTTCTCAATGT-AATG-TCTTCTTT...................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................TCAATGT-AATG-TCTTCTTTTTGGAAA............................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TTTATTTCTCAATGT-AATG-TCTTCT.....................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TCTTCTTTTTGGAAAA...........................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................TTTCTCAATGT-AATG-TCTTCTTTTTG................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................TTTCTCAATGT-AATG-TCTTCTTTTTGA...............................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TATTTCTCAATGT-AATG-TCTTCTT....................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................CTCAATGT-AATG-TCTTCTTTTTGGAAAA...........................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................AATG-TCTTCTTTTTGGAAAAT------....................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................T-AATG-TCTTCTTTTTGGAAAAA------....................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................ATGTTTTAAATTAC-AG-TAGTTATAA.......................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TTTATTTCTCAATGT-AATG-TCTTCTTTT..................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................TGTTTTAAATTAC-AG-TAGTTATAATAAA--------------------------------------------------------------------...............................................	28	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TTTATTTCTCAATGT-A...............................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TTCTCAATGT-AATG-TCTTCTTTTTGGAA.............................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................TTTTAAATTAC-AG-TAGTTATAATA.....................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................TCTCAATGT-AATG-TCTTCTTTTTGG...............................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TATTTCTCAATGT-AATG-TCTTCTTTTTGGA..............................................................................................................................................................	30	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................AATGT-AATG-TCTTCTTTT..................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................TTTCTCAATGT-AATG-TCTTC......................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................GT-AATG-TCTTCTTTTT.................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................G-TCTTCTTTTTGGAAAAT------....................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................CTCAATGT-AATG-TCTTCTTTTTGGA..............................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................CTTCTTTTTGGAAAA...........................................................................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................AG-TAGTTATAATAAT--------------------------------------------------------------------T-------.......................................	16	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TTCTCAATGT-AATG-TCTTCTTTTTGGAAAA...........................................................................................................................................................	30	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................TTTCTCAATGT-AATG-TCTTCTTTTTGGAA.............................................................................................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................TATGTTTTAAATTAC-AG-TAGTTATAATA.....................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................TCTCAATGT-AATG-TCTTCTTTTTGGAAAA...........................................................................................................................................................	29	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

ATAAAT--TTTTA--------------------TTTTCTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTTTTATTTTTATAAAATATTTATTTCTCAATGT-AATG-TCTTCTTTTTGGAAAAT------TTATGTTTTAAATTAC-AG-TAGTTATAATAAT--------------------------------------------------------------------T-------TCCCTTGTATTTACTT-----------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................................................................................................................................................................................................................................TTATTTCTCAATGT-AATG-TCTTCTT....................................................................................................................................................................	25	20	0.20	4	4	0	0	0
.....................................................................................................................................................................................................................................................TTATTTCTCAATGT-AATG-TCTTCTTT...................................................................................................................................................................	26	20	0.10	2	2	0	0	0
.....................................................................................................................................................................................................................................................TTATTTCTCAATGT-AATG-TCTTC......................................................................................................................................................................	23	20	0.10	2	1	0	1	0
.....................................................................................................................................................................................................................................................TTATTTCTCAATGT-AATG-TCTTCT.....................................................................................................................................................................	24	20	0.10	2	1	0	1	0
..................................................................................................................................................................................................................................................TATTTATTTCTCAATGT-AATG-TCTTC......................................................................................................................................................................	26	20	0.10	2	2	0	0	0
......................................................................................................................................................................................................................................................TATTTCTCAATGT-AATG-TCTTCTTTT..................................................................................................................................................................	26	20	0.05	1	1	0	0	0
......................................................................................................................................................................................................................................................TATTTCTCAATGT-AATG-TCTTC......................................................................................................................................................................	22	20	0.05	1	1	0	0	0
......................................................................................................................................................................................................................................................TATTTCTCAATGT-AATG-TCTTCTT....................................................................................................................................................................	24	20	0.05	1	1	0	0	0
......................................................................................................................................................................................................................................................TATTTCTCAATGT-AATG-TCTTCTTT...................................................................................................................................................................	25	20	0.05	1	1	0	0	0
..................................................................................................................................................................................................................................................................T-AATG-TCTTCTTTTTGGAAAAT------TTA.................................................................................................................................................	25	20	0.05	1	1	0	0	0
...............................................................................................................................................................................................................................................................ATGT-AATG-TCTTCTTTTTGGA..............................................................................................................................................................	21	20	0.05	1	0	0	1	0
....................................................................................................................................................................................................................................................TTTATTTCTCAATGT-AATG-TCTTCTT....................................................................................................................................................................	26	20	0.05	1	1	0	0	0
.....................................................................................................................................................................................................................................................TTATTTCTCAATGT-AATG-TCT........................................................................................................................................................................	21	20	0.05	1	1	0	0	0
.............................................................................................................................................................................................................................................................CAATGT-AATG-TCTTCTTTTTGGAAAA...........................................................................................................................................................	26	20	0.05	1	1	0	0	0

droYak3

T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGAAT------CTGGGCTTAGCGTGCT-CGACTGCCCAGATAAC--------------------------------------------------------------------T-------T--AGTGTCTTCCCTC-----------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.....................................................................................................................................................................................................................................................................................................CTTAGCGTGCT-CGACTGCCCA.........................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................TTAGCGTGCT-CGACTGCCCA.........................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................CTTAGCGTGCT-CGACTGCCC..........................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................GCT-CGACTGCCCAGATAAC--------------------------------------------------------------------T-------T--AGT.................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGAAT------CTGGGCTGAGCGTGCT-CGACTGCCCAGATAAC--------------------------------------------------------------------T-------T--AGTGTCTTCCCTC-----------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..................................................................................................................................................................................................................................................................................................GGGCTGAGCGTGCT-CGACTG.............................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................GCCCAGATAAC--------------------------------------------------------------------T-------T--AGTGTC..............................	19	1	1.00	1	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................ATAAC--------------------------------------------------------------------T-------T--AGTGTCTTCCCTC-----------------------	20	1	1.00	1	0	0	0	0	1	0	0

dvi_6340

scaffold_12875:12046904-12047054 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads