ID:

dvi_6266

 Coordinate:

scaffold_12875:11925428-11925578 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.5 -10.2 -9.9 -9.9

Flybase annnotation

CDS [Dvir\GJ21881-cds]; exon [dvir_GLEANR_7207:10]; intron [Dvir\GJ21881-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------#############################---------------------
ATAATTACGAAATATAAACACCGAAATCCGAACTGGTCTACTTTTTAAACGAAGCAGCATAGTACTTACTTCGCTAAACCGTTGTTGCTGATGTCCTACCAATCCTTTCATTCCAATTTTAGTTTGCAAGCATATTGGTTTCCCCTATTTTAGTACACACATTTTTGGTAATTATCGCCAATATTATTTATATGTATGTAGTTCCTGATGTCGTCGTTTCTAAGTTCTAAAGGTCTTGGGCAGTGGAACAA
***************************************************************************.......((....((((..((.((((((.(((.((..............)).)))...))))))...........................))..))))....))*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M028
head
 M047
female body
 V053
head
 SRR060667
160_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060654
160x9_ovaries_total
 SRR060665
9_females_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060676
9xArg_ovaries_total
 SRR060677
Argx9_ovaries_total
 V116
male body		 SRR060664
9_males_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR060678
9x140_testes_total
 SRR1106727
larvae
 SRR060663
160_0-2h_embryos_total
 SRR060671
9x160_males_carcasses_total
 SRR060670
9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 M027
male body
................................................................................................................................................................................................................................TTCTAAAGGTCTTGGGCAGTGGAAC.. 25 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................AAAGGTCTTGGGCAGTGGAAC.. 21 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................AAAGGTCTTGGGCAGTGGAA... 20 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................AAAGGTCTTGGGCAGTGGAACA. 22 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TAAAGGTCTTGGGCAGTGGAAC.. 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GTTCCTGATGTCGTCGTTTCTAAGTT......................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TTCTAAAGGTCTTGGGCAGTGGAACA. 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................AAACCGTTGTTGCTGATGTCCTACC....................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TGTTCCTGATGTCGTCGTTTCTA............................. 23 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AAGTTCTAAAGGTCTTGGGCAGTG...... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GTTCTAAAGGTCTTGGGC.......... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................AAGGTCTTGGGCAGTGGAAC.. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...ATTACGAAATATAAACACCGAAATCCGA............................................................................................................................................................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TTCGCTAAACCGTTGTTGCTGATGTCC........................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TCTAAGTTCTAAAGGTCTTGGGCAGTG...... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............TATAAACACCGAAATCCGA............................................................................................................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TACACACATTTTTGGTAATTATCGCCA....................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TAAGTTCTAAAGGTCTTGGGCA......... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................CCGTTGTTGCTGATGTCCTA......................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TCCTGATGTCGTCGTTTCT.............................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AAGTTCTAAAGGTCTTGGGCAC........ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TGATGTCGTCGTTTCTAAG........................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GATGTCGTCGTTTCTAAG........................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................GGTCTTGGGCAGTGGAAC.. 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................TACTTACTTCGCTAAACCGTT........................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GTTCTAAAGGTCTTGGGCAGTGGAA... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CTAAGTTCTAAAGGTCTTGGGCAGTGG..... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GTTCTAAAGGTCTTGGGCAGTGGAACA. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TTCGCTAAACCGTTGTTGCTGATGTC............................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TCCTGATGTCGTCGTTTCTAAGTTC........................ 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................AACACGGAAATCCGAACTTGT...................................................................................................................................................................................................................... 21 2 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................ATGTCGTCGTTTCTAAGTTC........................ 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TTCTAAAGGTCTTGGGCAG........ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TAAAGGTCTTGGGCAGTGGAACAA 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GTCGTCGTTTCTAAGTTCTAAA.................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TTTTTGTTCTAAAGGTCTTGGGC.......... 23 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................TTTTTGGTAATTATCGCCAA...................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..AATTACGAAATGTAAACACC..................................................................................................................................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TTAGTACACACATTTTTGGTAATTAT............................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TCTAAAGGTCTTGGGCAGT....... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GTTCCTGATGTCGTCGTTTCTAAG........................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TTCTAAAGGTCTTGGGCAGTG...... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TCGTTTCTAAGTTCTAAAGGTCT............... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...ATTACGAAATATAAACACCGAAATCC.............................................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GTTCCTGATGTCGTCGTTTC............................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AAGTTCTAAAGGTCTTGGGCAGTGGAA... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GTTCCTGATGTCGTCGTT................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GATGTCGTCGTTTCTAAGTTC........................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................TGTTGCTGATGTCCTACCAATCCTT................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TTCTAAAGGTCTTGGGCAGTGG..... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GTTCTAAAGGTCTTGGGCAGTGGAAC.. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....TACGAAATATAAACACCGA................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TTCATTCCAATTTTAGTTTGC............................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GTTCCTGATGTCATCGTTTCTAAGT.......................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................GGTCTTGGGCAGTGGAACA. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................TTACTTCGCTAAACCGTTGTTGCTG................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................TTTTAAACGAAGCAGCATAGTACTTAC...................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............TATAAACACCAAAATCCGAAA.......................................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......ACGAAATATAAACACCGAAATCCG............................................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....TACGAAATATAAACACCG.................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GATGTTCCTGATGTCGTCGTT................................. 21 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................AACACGGAAATCCTAACTTGT...................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................AACACGGAAATCCCAACTG........................................................................................................................................................................................................................ 19 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................AAGACGTAAATCCGAACTGGT...................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................AACCCGGAAATCCGAACTGGG...................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................GCATATTGGTTTCCTCTCTGT..................................................................................................... 21 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................ATGGTGTCGTTTCTAAGT.......................... 18 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................TACTTATTCAATGAAGCAGC................................................................................................................................................................................................. 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................ATAATCGTCAATATTATTTATTT.......................................................... 23 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................GATCCTGATGTCTTCGTAT................................ 19 3 19 0.11 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................GATGTTCCTGATGTCGTC.................................... 18 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...........ATATAAACTCCGAATGCCG............................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................................ATCCTGATGTCGTCGGAT................................ 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TATTAATGCTTTATATTTGTGGCTTTAGGCTTGACCAGATGAAAAATTTGCTTCGTCGTATCATGAATGAAGCGATTTGGCAACAACGACTACAGGATGGTTAGGAAAGTAAGGTTAAAATCAAACGTTCGTATAACCAAAGGGGATAAAATCATGTGTGTAAAAACCATTAATAGCGGTTATAATAAATATACATACATCAAGGACTACAGCAGCAAAGATTCAAGATTTCCAGAACCCGTCACCTTGTT
***********************************************************************.......((....((((..((.((((((.(((.((..............)).)))...))))))...........................))..))))....))*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M027
male body		 SRR060666
160_males_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060657
140_testes_total
 SRR060687
9_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060679
140x9_testes_total
 M028
head
 SRR060672
9x160_females_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 M061
embryo
 SRR060658
140_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 V047
embryo
 SRR060662
9x160_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 V053
head
...........................................................................................ACAGGATGGTCGGGAACGTA............................................................................................................................................ 20 3 3 45.33 136 85 15 13 5 4 4 0 2 1 2 1 1 1 1 1 0 0 0 0 0
............................................................................................CAGGATGGTCGGGAACGTA............................................................................................................................................ 19 3 7 12.71 89 65 11 4 1 1 0 0 0 1 0 2 1 1 0 0 0 0 1 1 0
.........................................................GTATCATGAATGAAGCGATTT............................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................GGGGATAAGATCATGTGTGTA......................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................GGGATGGTTAAGAAAGTAA........................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AGATTCAAGGTTTCCAAGACC............ 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................CAGGATGGTCTGGAACGTA............................................................................................................................................ 19 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................GTTCGAAGAACCAAACGGGA......................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................ACAAACATCTAGGAGTACAG....................................... 20 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................ATACATACATCAAGTACTT.......................................... 19 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................GATAATAAAAAAACATACATCAA................................................ 23 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.................TCTGGAGTTAGGCTTGACC....................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:11925378-11925628 + dvi_6266 AT----AATTACGAAATA-TAAACACCGAAATCCGAAC----TGGTCTA----CTTTTTA--A---------------------A---------------------------------------C-------------------------------------------------------GAAGCAGCATAGTACTTA--CTTC------------------G--CTAAACCGTT---G---TTGCTGATGTC------------------------CTA-C-----CAATC------CTTTCATTC-CAATTT--TAGTTTGCA----AGCATATTGGTTTCC---------CCTATT------------------------------------------------------------------------------T----TAGTACACACATTTTTGGTAATTATCGCCAATATTATTTAT--------------ATGTATGTAGTTCCTGATGTCGTCGTTTCTAAGTTCTAAAGGTCTTGG--GCAGT----GGA-------ACAA------
droMoj3 scaffold_6496:14926854-14927168 + AT----AAATACGAAATA-TAAACACTGAAATCCGAAA----TGGTCTA----CTTATTA--A---------------------A---------------------------------------C----GAT---AATCCAA------CCCA----------------------CCGAACGAAGCCGCCGAGTATTCGG-CTTC------------------G--CCAAACCGTAGCTGCCGCTGATGATGTC--------CACCTGCCC----------CTCCT-----C-C-----TCTGCATTCCAAGCTCCAAGATTTGCCAATTGCTGCATTGGTTTGCTGCTTTTTTTTCAATTTTTATT-----------------------------------------------------------------------T----GGCTTGATCATTTTTCGGTAACTAT---------ATTTCGCCCA---TTATTATT-ATTATTTAGTTCCTGATGTCGTCGTTGATAAATGGTAAAGGTCAGCG--TATCG----CACGCA-CACACAC------
droGri2 scaffold_15245:11780505-11780793 - AT----GATAACGAAATA-TAAACACTGAACCCCGAAC---TCTACTGGTCTACTTTTTA--A---------------------A---------------------------------------T-----------------------------GAAGCGTAAATGTAGTCGTCAT----GT-----------AGTTGG-CT-------------------GA--ATAAACCG---------TTGCTGACGTCCTACTGTATA-CTGCCC----------ACCCT-----T-C-----CCTTCGTTATAAAATT--TGGTTTGCAG---AACGCTTTGGTTTCC---------TTTACTTT-TTGTTGGTTAC-----------------------------------------------------------ATT-TAT------------ACATATTGGTAATTATCGACAATATTATTTGTGT--------------GTATTTAGTTCCTGATACCGTCATTGATAAATGGTAAAGGTCTTGG--TCATT----GGA-------ACGA------
droWil2 scf2_1100000004514:1170303-1170659 + AT----AATAATAAAAAA-AAAACCAAGAAATCCGAAA----TGATCCTTGTATCTTTATT-----CCATCCATCATCATGTAATGCAACTTGC-----AAATTTTATACCCACA----TCTATATA--GAG---AATATAT------TTATATATATTGTTACGATGATCACCA------AA---------AACC-GA-TCTC--------------CCC-G--ATAAACGAT------------------C--------TAA-----------------------------------------------------------------CTGGAGCTGCC--------------------------T----A-ATCAATCCTTATTCAGATGCCTCATCCCATTTGCCTTAGTTGTATCTTAGTTTTTGGTTAC--CCA-T---CATCAAGTAATTATAATATCTAATA-TATAATTCTGTGTGTGTGTA------TATGTCTATAGTTCCTGACGTCGTCGTCGACAAGTGGTAAAGGTT-GCC--CCAATAAATACAACC-------G------
dp5 3:1756157-1756256 - T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTAATAATCGTCACCATTGTTTGCAT--A------TAC-AAAATGTAGTTCCTGACGCCGTCGTCGACAAATGGTAACGGTTTTGC--GCACC----ATAACCGGATACGA------
droAna3 scaffold_13266:5678838-5678929 - T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTATTAACCGATAATATTATT-----------------AATAATATAGTTCCTGACGTCGTCGTCGACAAGTGGTAACGGTTTGGAGAACACC----ATAACC-GATACGA------
droFic1 scf7180000453858:1551670-1552019 - AAACGTA--AACGAAATAATAAAAGAAGAAATCCGAAA---CCAGCCCGTGTACTTTTCCC-----C--TC---------------CGAGTAGCTCCATTCATTT---------------CCC-----------------AT------CCCACTAGGCTGTAAGTATGAGCCCACC----GGGTCTGCTAAATTCCAGAGCTTCGGAAGACGCAGATCGCTGATCACTGATCG---------CTGATGATGCT--------TGA-TAATCCCAAGCCCAA-T-----AAATC--CCGAT-TACCCCC-GAGTTT--TGGTTTGCT----CTTGCGTTGGT--------------------------T----G--------------------------------------------------------------C-CCC-C---GAACAAGAATCTCTGGTAATAAT-GCCACCGTTATTCGCCTC------------AAAATGTAGTTCCTGAAGTCGTCGTCGACAGGATGTAGAGGTTTGGA--CCACC----TAAGCC-GATACGA------
droEle1 scf7180000491214:5270573-5270723 + TC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAATT--TGGTTTGCT----CTTGCGTTGGC--------------------------T----A------------------------------------------------------------ATC-CCCCCAAGAATCAAGAATACCTGGTAATAATCGCCACCGTTACA--------------TAT-AATATCTAGTTCCTGACGTCGTCGTCGACAGGATGTAAAGGTTTGGA--CCACC----AGAACC-GATACGAATGTGA
droRho1 scf7180000777217:16026-16396 + AAACGTAAAATCGAAATAATAAAACAAGAAATCCGAAA---CTGGCCTGTGTACTTTTCCCAATTCC--CT---------------CTAGTAGAAACATACATTT---------------CCTCCCCTTGAA---AATC----------CTACTAGGCTGTAAGTATGAACCCACC----GAAACTGCCAAATTCCAAAATTTCGGAAGCCGCAGAT--------------CG---------CTAATGACGCT--------TAGCTGGTCCTAAATCCAAATGAAAAGAACC--C-TATCCACCCAT-GAGTTT--TGGTTTGCT----CTTGCGTTGGT--------------------------T----A------------------------------------------------------------ATC-CCT-A---GATCATGAATACCCGGTAATAATTGCCACCGTTATTCGCCCA---AAAAAAAT-GAAATTTAGTTCCTGACGTCGTCGTCGACAGGATGTAAAGGTTTGGA--CCACC----AAAACC-GATACGA------
droBia1 scf7180000302143:340019-340354 - AAACGTAAAAACGAAATAATAAAACAAGAAATCCGAAG---CTGGCCCGTGTACTCTTCCC-----CCACC---------------CCGGTAGAAACTGTCATTT---------------CCCCCC----AATCTAATCCAA------CCCACTAGGCTGTAAGTATGGGCCCACC----GAAACTGCCAAGTACCAGAATTTCGGAAGAT---------------------------GC---------CGCT--------TAACTGGTCTCCAGTTCGA-T-----ACACC--CCCAC-CACCC-C-GAGTTT--TGGTTTGCT----CTTGCGTTGGT--------------------------T----A------------------------------------------------------------GC--CCT-C---GCTCAAGAACCCCTGGTAATAATTGCCACCGTTACTCGCCC------------AAAAATGTAGTTCCTGACGTCGTCGTCGACAGGATGTAAAGGTTTGGA--CCACC----GAAACC-G------------
droTak1 scf7180000415878:934570-934929 - AAACGTAAAAACGAAATAATAAAACAAGAAATCCGAAGTTCCTGCTCTGTGTACTTTTCC--ATCCCCA----ACC---------CCCAGTAGAAAAACA---------CCCACC----TCCCCCCA--GAT---AATCCAA------CCCACTAGGCTGTAAGTATGAGCCCCCT----GAAACTGCCAAATTCCAGAATTTCGGAAGAC---------------------------GT---------CGCT--------TAACTGGTCCCGAGTTCAA-T-----GAACCCCCCCAT-CACCCAT-GAGTTT--TGGTTTGCT----CTTGCGTTGGT--------------------------T----A------------------------------------------------------------ACC-CCT-C---GATAAAGAACCCATGGTAATAATTGCCACCGTTATTCGCCCCCA------AA-AAAAATGTAGTTCCTGACGTCGTCGTCGACAGGATGTAAAGGTTTGGA--CCACC----AAAACC-GTTACGA------
droEug1 scf7180000409464:187735-188103 - AAACGTAAAAACGAAATAATAAAACAAGAAATCCGAAG---CTGGCCTGTTTACTATTCCC-----CCA----TCT---------CCTAGTAGAAACACACATTT---------------CCCAC----GAA---AGTCCAAGTCAAGTTCATTAGGTTGTAAGTATAAGCCCACC----GAAACTGCAAAATTCCACAATTTCGGAAGATGCAGAT--------------CG---------CTGATGCCGCT--------TAAATGGTCCCAAGTTCAA-T-----GCCCC--A-AATCCACCCAT-GAGTTT--TGGTTTGCT----CTTGCGTTGGT--------------------------T----G------------------------------------------------------------AACTCCT-G---TATTAAGAACCCCTGGTAATAATTGCCACCGTTATTCGCCCCTTTA------CAAAACTGTAGTTCCTGAAGTCGTCGTCGACAGGATGTAAAGGTTTGGA--CCACC----AAAACC-GATACGA------
dm3 chr2R:19814649-19814709 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAGTTCCTGATGTCGTCGTCGACAGGATGTAGAGGTTTGGA--CCACC----AAAGCC-GATACGA------
droSim2 2r:20315442-20315502 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAGTTCCTGATGTCGTCGTCGACAGGATGTAGAGGTTTGGA--CCACC----AAAGCC-GATACGA------
droSec2 scaffold_11:2212649-2212704 - GT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTC---------GTTATT------------------------------------------------------------------------------T----TGTAATACGATTTCTCAGTA-----------------------------------------------------ATTATCATTGGTAGTATTTAAAT--------------------------------------
droYak3 2R:19792261-19792399 - A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTT--TGGTTTGCT----CTTGCGTTGGT--------------------------T----A------------------------------------------------------------ACC-CCTTC--AGATCGAGAATCCCCGGTAATAAT-G----CG-TATTCGCCCC----------CGAAATTGTAGTTCCTGATGTCGTCGTCGACAGGATGTAGAGGTTTGGA--CCACC----AAAGCC-GATACGA------
droEre2 scaffold_4845:21187488-21187836 - AAACGTA--AACGAAACAATAAAACAAGAAATCCGAAC---CCGGCCTGTGTACTGTACTCAATTCCCA----CCC------AATCCAAGTAGAATCACA---------CGCACACAGAATCACCCC--TAA---ACTGCAA------TCCTCTAGGCTGTAAGTACGATCCCACC----GACGCTGCTAAATTCCAGAATTTCGGAAGAT---------------------------GC---------CGCT--------TAACTGGTCCCCAGTGCCACTCC-----AC-CGC-CATTCCCCCAC-GAGTTA--TGGTTTGCT----CTTGCGTTGGT--------------------------T----C------------------------------------------------------------ACCCCCC-C---GATCGAGAATCCCCGGTAATAATC-----CG-TATTCGCCCC-----------GAAATTGTAGTTCCTGATGTCGTCGTCGACAGGATGTAGAGGTTTGGA--CCACC----AAAGCC-G------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AT----AATTACGAAATA-TAAACACCGAAATCCGAAC----TGGTCTA----CTTTTTA--A---------------------A---------------------------------------C-------------------------------------------------------GAAGCAGCATAGTACTTA--CTTC------------------G--CTAAACCGTT---G---TTGCTGATGTC------------------------CTA-C-----CAATC------CTTTCATTC-CAATTT--TAGTTTGCA----AGCATATTGGTTTCC---------CCTATT------------------------------------------------------------------------------T----TAGTACACACATTTTTGGTAATTATCGCCAATATTATTTAT--------------ATGTATGTAGTTCCTGATGTCGTCGTTTCTAAGTTCTAAAGGTCTTGG--GCAGT----GGA-------ACAA------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTAAAGGTCTTGG--GCAGT----GGA-------AC........2515.005050000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGTCTTGG--GCAGT----GGA-------AC........2113.003020000000000000000000000000000000000000000000000000000000000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGTCTTGG--GCAGT----GGA-------A.........2012.002000000000000000000000000000000000000000000000000000000000000200
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGTCTTGG--GCAGT----GGA-------ACA.......2212.002011000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGGTCTTGG--GCAGT----GGA-------AC........2212.002020000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGATGTCGTCGTTTCTAAGTT............................................2612.002020000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTAAAGGTCTTGG--GCAGT----GGA-------ACA.......2612.002002000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................AAACCGTT---G---TTGCTGATGTC------------------------CTA-C-----C................................................................................................................................................................................................................................................................................................2512.002020000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTCTAAAGGTCTTGG--GCAGT----G...................2411.001000000000000000000000000000000000000000000000000000000000000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTAAAGGTCTTGG--GC...........................1811.001000000000000001000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGTCTTGG--GCAGT----GGA-------AC........2011.001010000000000000000000000000000000000000000000000000000000000000
.......ATTACGAAATA-TAAACACCGAAATCCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................TTC------------------G--CTAAACCGTT---G---TTGCTGATGTC------------------------C..........................................................................................................................................................................................................................................................................................................2711.001000010000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAGTTCTAAAGGTCTTGG--GCAGT----G...................2711.001000000000000000000000000000100000000000000000000000000000000000
................TA-TAAACACCGAAATCCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACACATTTTTGGTAATTATCGCCA........................................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTTCTAAAGGTCTTGG--GCA..........................2211.001000000000000000000000000000000000000000000000000000000000000100
......................................................................................................................................................................................................................................CCGTT---G---TTGCTGATGTC------------------------CTA-.......................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGATGTCGTCGTTTCT.................................................1911.001000000000000000000000000000000000000000000000000000000000000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTCTAAAGGTCTTGG--GCAC.........................2211.001010000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGTCGTCGTTTCTAAG..............................................1911.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCGTCGTTTCTAAG..............................................1811.001000000000000000000000000000000000000000000000000000000000000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTTGG--GCAGT----GGA-------AC........1811.001000000000000000000000000000000000000000000000000000000000000100
................................................................................................................................................................................................TACTTA--CTTC------------------G--CTAAACCGTT---..................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTAAAGGTCTTGG--GCAGT----GGA-------A.........2511.001000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAGTTCTAAAGGTCTTGG--GCAGT----GG..................2711.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTAAAGGTCTTGG--GCAGT----GGA-------ACA.......2711.001010000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................TTC------------------G--CTAAACCGTT---G---TTGCTGATGTC------------------------...........................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000100000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGATGTCGTCGTTTCTAAGTTC...........................................2511.001000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCGTCGTTTCTAAGTTC...........................................2011.001000010000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTAAAGGTCTTGG--GCAG.........................1911.001010000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGGTCTTGG--GCAGT----GGA-------ACAA------2411.001000000000000000000000000000000000000000000000000000000000000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTCGTTTCTAAGTTCTAAA.......................................2211.001000000000000000000100000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTGGTAATTATCGCCAA.......................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................T----TAGTACACACATTTTTGGTAATTAT.............................................................................................................2611.001000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAAGGTCTTGG--GCAGT----....................1911.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGATGTCGTCGTTTCTAAG..............................................2411.001010000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTAAAGGTCTTGG--GCAGT----G...................2111.001000000000000000000000000000000000000000000000000000000000000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTTCTAAGTTCTAAAGGTCT..................................2311.001001000000000000000000000000000000000000000000000000000000000000
.......ATTACGAAATA-TAAACACCGAAATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGATGTCGTCGTTTC..................................................2011.001010000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTCTAAAGGTCTTGG--GCAGT----GGA-------A.........2711.001000000000000000010000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGATGTCGTCGTT....................................................1811.001010000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCGTCGTTTCTAAGTTC...........................................2111.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................T---G---TTGCTGATGTC------------------------CTA-C-----CAATC------CTT...................................................................................................................................................................................................................................................................................2511.001000000000000000000000000010000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTAAAGGTCTTGG--GCAGT----GG..................2211.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTAAAGGTCTTGG--GCAGT----GGA-------AC........2611.001000000000000000000100000000000000000000000000000000000000000000
.........TACGAAATA-TAAACACCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000100000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................TTCATTC-CAATTT--TAGTTTGC............................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTTGG--GCAGT----GGA-------ACA.......1911.001010000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................TTA--CTTC------------------G--CTAAACCGTT---G---TTGCTG........................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.......................................................TTTTA--A---------------------A---------------------------------------C-------------------------------------------------------GAAGCAGCATAGTACTTA--C.......................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000010
..........ACGAAATA-TAAACACCGAAATCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.........TACGAAATA-TAAACACCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
AT----AAATACGAAATA-TAAACACTGAAATCCGAAA----TGGTCTA----CTTATTA--A---------------------A---------------------------------------C----GAT---AATCCAA------CCCA----------------------CCGAACGAAGCCGCCGAGTATTCGG-CTTC------------------G--CCAAACCGTAGCTGCCGCTGATGATGTC--------CACCTGCCC----------CTCCT-----C-C-----TCTGCATTCCAAGCTCCAAGATTTGCCAATTGCTGCATTGGTTTGCTGCTTTTTTTTCAATTTTTATT-----------------------------------------------------------------------T----GGCTTGATCATTTTTCGGTAACTAT---------ATTTCGCCCA---TTATTATT-ATTATTTAGTTCCTGATGTCGTCGTTGATAAATGGTAAAGGTCAGCG--TATCG----CACGCA-CACACAC------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTAAAGGTCAGCG--TATCG----CA..................2311.001000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGTAAAGGTCAGCG--TATCG----CA..................2411.001000100
..........ACGAAATA-TAAACACTGAAATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTCGTTGATAAATGGTAAAGGTC...................................2511.001000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTGATGTCGTCGTTGATAA...............................................2211.001000100
droGri2
AT----GATAACGAAATA-TAAACACTGAACCCCGAAC---TCTACTGGTCTACTTTTTA--A---------------------A---------------------------------------T-----------------------------GAAGCGTAAATGTAGTCGTCAT----GT-----------AGTTGG-CT-------------------GA--ATAAACCG---------TTGCTGACGTCCTACTGTATA-CTGCCC----------ACCCT-----T-C-----CCTTCGTTATAAAATT--TGGTTTGCAG---AACGCTTTGGTTTCC---------TTTACTTT-TTGTTGGTTAC-----------------------------------------------------------ATT-TAT------------ACATATTGGTAATTATCGACAATATTATTTGTGT--------------GTATTTAGTTCCTGATACCGTCATTGATAAATGGTAAAGGTCTTGG--TCATT----GGA-------ACGA------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AT----AATAATAAAAAA-AAAACCAAGAAATCCGAAA----TGATCCTTGTATCTTTATT-----CCATCCATCATCATGTAATGCAACTTGC-----AAATTTTATACCCACA----TCTATATA--GAG---AATATAT------TTATATATATTGTTACGATGATCACCA------AA---------AACC-GA-TCTC--------------CCC-G--ATAAACGAT------------------C--------TAA-----------------------------------------------------------------CTGGAGCTGCC--------------------------T----A-ATCAATCCTTATTCAGATGCCTCATCCCATTTGCCTTAGTTGTATCTTAGTTTTTGGTTAC--CCA-T---CATCAAGTAATTATAATATCTAATA-TATAATTCTGTGTGTGTGTA------TATGTCTATAGTTCCTGACGTCGTCGTCGACAAGTGGTAAAGGTT-GCC--CCAATAAATACAACC-------G------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGACGTCGTCGTCGACA................................................2213.00330000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------TATGTCTATAGTTCCTGACG............................................................2111.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTAAAGGTT-GCC--CCAAT........................2011.00100001
.......................................................................................................TTTATACCCACA----TCTATATA--GAG---AAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
........................................................................................................................................................ATATATTGTTACGATGATCACCA------AA---------A...............................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
dp5
T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTAATAATCGTCACCATTGTTTGCAT--A------TAC-AAAATGTAGTTCCTGACGCCGTCGTCGACAAATGGTAACGGTTTTGC--GCACC----ATAACCGGATACGA------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGTTCCTGACGCCGTCGTCGACA................................................2611.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGTAACGGTTTTGC--GCACC----....................2211.0010000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCCGTCGTCGACAAATGGTA.........................................2311.0010000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGTAACGGTTTTGC--GCACC----ATAACC..............2811.0010001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTAACGGTTTTGC--GCA..........................1911.0010000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAATGGTAACGGTTTTGC--GCAC.........................2511.0010000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGGTTTTGC--GCACC----ATAACC..............2411.0010001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGTAACGGTTTTGC--GCAC.........................2111.0010001000000
droAna3
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTATTAACCGATAATATTATT-----------------AATAATATAGTTCCTGACGTCGTCGTCGACAAGTGGTAACGGTTTGGAGAACACC----ATAACC-GATACGA------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAACGGTTTGGAGAAC...........................1811.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGTGGTAACGGTTTGGAGAAC...........................2511.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGTAACGGTTTGGAGAACACC----....................2511.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGACGTCGTCGTCGACAAGTGGTA.........................................2711.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGACGTCGTCGTCGACA................................................2011.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGTGGTAACGGTTTGGAGA.............................2311.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGTAACGGTTTGGAGAACACC----A...................2511.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGTGGTAACGGTTTGGAGAACAC.........................2611.001000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAACGGTTTGGAGAACACC----....................2211.001000010
droFic1
AAACGTA--AACGAAATAATAAAAGAAGAAATCCGAAA---CCAGCCCGTGTACTTTTCCC-----C--TC---------------CGAGTAGCTCCATTCATTT---------------CCC-----------------AT------CCCACTAGGCTGTAAGTATGAGCCCACC----GGGTCTGCTAAATTCCAGAGCTTCGGAAGACGCAGATCGCTGATCACTGATCG---------CTGATGATGCT--------TGA-TAATCCCAAGCCCAA-T-----AAATC--CCGAT-TACCCCC-GAGTTT--TGGTTTGCT----CTTGCGTTGGT--------------------------T----G--------------------------------------------------------------C-CCC-C---GAACAAGAATCTCTGGTAATAAT-GCCACCGTTATTCGCCTC------------AAAATGTAGTTCCTGAAGTCGTCGTCGACAGGATGTAGAGGTTTGGA--CCACC----TAAGCC-GATACGA------SizeHit CountTotal NormTotal
No Reads
droEle1
TC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAATT--TGGTTTGCT----CTTGCGTTGGC--------------------------T----A------------------------------------------------------------ATC-CCCCCAAGAATCAAGAATACCTGGTAATAATCGCCACCGTTACA--------------TAT-AATATCTAGTTCCTGACGTCGTCGTCGACAGGATGTAAAGGTTTGGA--CCACC----AGAACC-GATACGAATGTGASizeHit CountTotal NormTotal
No Reads
droRho1
AAACGTAAAATCGAAATAATAAAACAAGAAATCCGAAA---CTGGCCTGTGTACTTTTCCCAATTCC--CT---------------CTAGTAGAAACATACATTT---------------CCTCCCCTTGAA---AATC----------CTACTAGGCTGTAAGTATGAACCCACC----GAAACTGCCAAATTCCAAAATTTCGGAAGCCGCAGAT--------------CG---------CTAATGACGCT--------TAGCTGGTCCTAAATCCAAATGAAAAGAACC--C-TATCCACCCAT-GAGTTT--TGGTTTGCT----CTTGCGTTGGT--------------------------T----A------------------------------------------------------------ATC-CCT-A---GATCATGAATACCCGGTAATAATTGCCACCGTTATTCGCCCA---AAAAAAAT-GAAATTTAGTTCCTGACGTCGTCGTCGACAGGATGTAAAGGTTTGGA--CCACC----AAAACC-GATACGA------SizeHit CountTotal NormTotal
No Reads
droBia1
AAACGTAAAAACGAAATAATAAAACAAGAAATCCGAAG---CTGGCCCGTGTACTCTTCCC-----CCACC---------------CCGGTAGAAACTGTCATTT---------------CCCCCC----AATCTAATCCAA------CCCACTAGGCTGTAAGTATGGGCCCACC----GAAACTGCCAAGTACCAGAATTTCGGAAGAT---------------------------GC---------CGCT--------TAACTGGTCTCCAGTTCGA-T-----ACACC--CCCAC-CACCC-C-GAGTTT--TGGTTTGCT----CTTGCGTTGGT--------------------------T----A------------------------------------------------------------GC--CCT-C---GCTCAAGAACCCCTGGTAATAATTGCCACCGTTACTCGCCC------------AAAAATGTAGTTCCTGACGTCGTCGTCGACAGGATGTAAAGGTTTGGA--CCACC----GAAACC-G------------SizeHit CountTotal NormTotal
No Reads
droTak1
AAACGTAAAAACGAAATAATAAAACAAGAAATCCGAAGTTCCTGCTCTGTGTACTTTTCC--ATCCCCA----ACC---------CCCAGTAGAAAAACA---------CCCACC----TCCCCCCA--GAT---AATCCAA------CCCACTAGGCTGTAAGTATGAGCCCCCT----GAAACTGCCAAATTCCAGAATTTCGGAAGAC---------------------------GT---------CGCT--------TAACTGGTCCCGAGTTCAA-T-----GAACCCCCCCAT-CACCCAT-GAGTTT--TGGTTTGCT----CTTGCGTTGGT--------------------------T----A------------------------------------------------------------ACC-CCT-C---GATAAAGAACCCATGGTAATAATTGCCACCGTTATTCGCCCCCA------AA-AAAAATGTAGTTCCTGACGTCGTCGTCGACAGGATGTAAAGGTTTGGA--CCACC----AAAACC-GTTACGA------SizeHit CountTotal NormTotal
No Reads
droEug1
AAACGTAAAAACGAAATAATAAAACAAGAAATCCGAAG---CTGGCCTGTTTACTATTCCC-----CCA----TCT---------CCTAGTAGAAACACACATTT---------------CCCAC----GAA---AGTCCAAGTCAAGTTCATTAGGTTGTAAGTATAAGCCCACC----GAAACTGCAAAATTCCACAATTTCGGAAGATGCAGAT--------------CG---------CTGATGCCGCT--------TAAATGGTCCCAAGTTCAA-T-----GCCCC--A-AATCCACCCAT-GAGTTT--TGGTTTGCT----CTTGCGTTGGT--------------------------T----G------------------------------------------------------------AACTCCT-G---TATTAAGAACCCCTGGTAATAATTGCCACCGTTATTCGCCCCTTTA------CAAAACTGTAGTTCCTGAAGTCGTCGTCGACAGGATGTAAAGGTTTGGA--CCACC----AAAACC-GATACGA------SizeHit CountTotal NormTotal
No Reads
dm3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAGTTCCTGATGTCGTCGTCGACAGGATGTAGAGGTTTGGA--CCACC----AAAGCC-GATACGA------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGGATGTAGAGGTTTGGA--CCACC----AATC................3013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCCTGATGTCGTCGTCGACAGGA.............................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGATGTAGAGGTTTGGA--CCACC----ATC.................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGGATGTAGAGGTTTGGA--CCACC----AA..................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTAGAGGTTTGGA--CCACC----ATC.................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGGATGTAGAGGTTTGGA--CC...........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGACAGGATGTAGAGG.....................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACAGGATGTAGAGGTTTGGA--CC...........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGATGTAGAGGTTTGGA--CCAC.........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGGATGTAGAGGTTTGGA--CCACC----....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACAGGATGTAGAGGTTTGGA--CCACC----....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAGAGGTTTGGA--CCACC----....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGATGTAGAGGTTTGGA--CCACA----TC..................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGGATGTAGAGGTTTGGA--CA...........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGTCGTCGTCGACAGGATGTA.........................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTAGAGGTTTGGA--CC...........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGGATGTAGAGGTTTGGA--CCACC----ATC.................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGACAGGATGTAGAGGT....................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGATGTAGAGGTTTGGA--CCAAT----C...................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAGAGGTTTGGA--CCACC----AAAGCC-.............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAGAGGTTTGGA--CCACC----A...................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTGATGTCGTCGTCT...................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACAGGATGTAGAGGTTTTT................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGA--CCACC----AAAGCC-GATA.........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATGTAGAGGTTTGGA--CCACG----....................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCGACAGGATGTAGAGGT....................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACAGGATGTAGAGGTTTGGA--CCACC----ATC.................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGGATGTAGAGGTTTGGA--CCA..........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAGAGGTTTGGA--CCA..........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTAGAGGTTTGGA--CCACC----A...................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGTCGTCGTCGACAGG..............................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCCTGATGTCGTCGTCGA..................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATGTCGTCGTCGACA................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTCGTCGACAGGATGTAGAG......................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTTCCTGATGTCGTCGTCGACAGGA.............................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATGTAGAGGTTTGGA--CCACC----ATC.................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGATGTAGAGGTTTGGA--CCACC----A...................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACAGGATGTAGAGGTTTGGA--CCACC----A...................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCGTCGACAGGATGTAGAGGTTTG.................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATGTAGAGGTTTGGA--CCACC----A...................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGTCGTCGTCGACATC..............................................19110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAGTTCCTGATGTCGTCGTCGACAGGATGTAGAGGTTTGGA--CCACC----AAAGCC-GATACGA------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGATGTAGAGGTTTGGA--CCACC----....................2512.00220000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGATGTCGTCGTCGACA................................................2212.00220000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGATGTCGTCGTCGA..................................................1812.00200200000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGGATGTAGAGGTTTGGA--CC...........................2311.00110000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACAGGATGTAGAGGTTTGGA--CCACC----....................2711.00110000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGGATGTAGAGGTTTGGA--CCAC.........................2511.00101000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGGATGTAGAGGTTTGGA--CCA..........................2411.00110000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCGTCGACAGGATGTAGAG......................................2111.00100010000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGGATGTAGAGGTTTGGA--CCACC----....................2611.00101000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATGTAGAGGTTTGGA--CCACC----A...................2411.00100010000000000000
droSec2
GT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTC---------GTTATT------------------------------------------------------------------------------T----TGTAATACGATTTCTCAGTA-----------------------------------------------------ATTATCATTGGTAGTATTTAAAT--------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTT--TGGTTTGCT----CTTGCGTTGGT--------------------------T----A------------------------------------------------------------ACC-CCTTC--AGATCGAGAATCCCCGGTAATAAT-G----CG-TATTCGCCCC----------CGAAATTGTAGTTCCTGATGTCGTCGTCGACAGGATGTAGAGGTTTGGA--CCACC----AAAGCC-GATACGA------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTAGAGGTTTGGA--CCACC----A...................2313.00300000030000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGGATGTAGAGGTTTGGA--CCAC.........................2511.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTAGAGGTTTGGA--CCAC.........................2111.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAGAGGTTTGGA--CCACC----....................2011.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGAGGTTTGGA--CCACC----AAA.................2211.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGGATGTAGAGGTTTGGA--CCACC----A...................2711.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGGTTTGGA--CCACC----....................1811.00110000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTAGAGGTTTGGA--CCACC----....................2211.00101000000000
droEre2
AAACGTA--AACGAAACAATAAAACAAGAAATCCGAAC---CCGGCCTGTGTACTGTACTCAATTCCCA----CCC------AATCCAAGTAGAATCACA---------CGCACACAGAATCACCCC--TAA---ACTGCAA------TCCTCTAGGCTGTAAGTACGATCCCACC----GACGCTGCTAAATTCCAGAATTTCGGAAGAT---------------------------GC---------CGCT--------TAACTGGTCCCCAGTGCCACTCC-----AC-CGC-CATTCCCCCAC-GAGTTA--TGGTTTGCT----CTTGCGTTGGT--------------------------T----C------------------------------------------------------------ACCCCCC-C---GATCGAGAATCCCCGGTAATAATC-----CG-TATTCGCCCC-----------GAAATTGTAGTTCCTGATGTCGTCGTCGACAGGATGTAGAGGTTTGGA--CCACC----AAAGCC-G------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGATGTAGAGGTTTGGA--CCAC.........................2411.0010000100
.........................................................................................................................................................................................TGCTAAATTCCAGAATTTCGGAAG...............................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGGATGTAGAGGTTTGGA--.............................2111.0010000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATGTCGTCGTCGACAGGATG...........................................2411.0010000100
................................................................................................................................................................................................................................................................................................................................TTGCT----CTTGCGTTGGT--------------------------T----C------------------------------------------------------------ACCCC...........................................................................................................................................2311.0011000000
.................................CGAAC---CCGGCCTGTGTACTGTACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTTCCTGATGTCGTCGTC....................................................2011.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCGTCGTCGACAGGATGTAGAGGT....................................2711.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTAGTTCCTGATGTCGTCGTC....................................................2411.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCGTCGACAGGATGTAGAGGTTTGG................................2711.0010000100
......................................................................................CAAGTAGAATCACA---------CGCACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAGAGGTTTGGA--CCACC----....................2011.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACAGGATGTAGAGGTTTGGA--CCA..........................2611.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAGAGGTTTGGA--CCACC----A...................2111.0010000100
..................................................................................AATCCAAGTAGAATCACA---------CGCACACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGAGGTTTGGA--CCACC----A...................2011.0010000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTCGACAGGATGTAGA.......................................1911.0010000100
..................ATAAAACAAGAAATCCGAAA---.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010100000

Generated: 05/16/2015 at 10:19 PM