dvi_6246

CDS [Dvir\GJ21875-cds]; exon [dvir_GLEANR_7201:2]; exon [dvir_GLEANR_7201:1]; CDS [Dvir\GJ21875-cds]; intron [Dvir\GJ21875-in]

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GTTGCGTTGCAAAGTTTTTGTTTTTCTGGACGACCTGCCTGGTTATTGCCGTAGATTTCCAAACTTATCTAAGGTACTTGCAAGTGAACGAACCATTGCCTTCTTTTCAGCCAAGTTCATCGCAGAAAAGAAGTGCTTGCGGGTGTCAAGCTTTATGACAGCCTTATAGACGCATCCACAACGAATAACAAGAGGTTGTCTCGAACAAAGGATTAGCCATTAACCTCTTTATTGATCTCTTAATTGCAGCAGCTCAAGGAAGGCAAGGGGGAGAAGCCGCCTACCATTGTTGGAATGGC ************************************************.(((((..........)))))((((.((((((((((.............(((((((((.((..........)).)))))))))))))))))))(((((.......))))))))).......(((...............((((((((((((........))))........))))))))...............)))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V053 head	SRR1106730 embryo_16-30h	V116 male body	SRR1106729 mixed whole adult body	SRR060656 9x160_ovaries_total	SRR060682 9x140_0-2h_embryos_total
.................TTGTTTTTCTGGACGACC........................................................................................................................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................TATGACAACCTTATTGACGC..............................................................................................................................	20	2	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................TAGGACAGCCTTATTGACGCG.............................................................................................................................	21	3	2	0.50	1	1	0	0	0	0	0
.............................................................................................................................................................................ATCCACAACGTAAAAGAAGAG.........................................................................................................	21	3	4	0.25	1	0	0	1	0	0	0
...................................................................................CTGAACGAACCATTGCT.......................................................................................................................................................................................................	17	2	10	0.10	1	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................GAAGGGGGAGAAACGGCCT.................	19	3	11	0.09	1	1	0	0	0	0	0
......TTGCCAAGATTTTGTTTTTCTA...............................................................................................................................................................................................................................................................................	22	3	14	0.07	1	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................TAGGCCAGGGGGGGAAGC......................	18	3	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................AAAGAAGTGGTTCCTGGTG..........................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	1

CAACGCAACGTTTCAAAAACAAAAAGACCTGCTGGACGGACCAATAACGGCATCTAAAGGTTTGAATAGATTCCATGAACGTTCACTTGCTTGGTAACGGAAGAAAAGTCGGTTCAAGTAGCGTCTTTTCTTCACGAACGCCCACAGTTCGAAATACTGTCGGAATATCTGCGTAGGTGTTGCTTATTGTTCTCCAACAGAGCTTGTTTCCTAATCGGTAATTGGAGAAATAACTAGAGAATTAACGTCGTCGAGTTCCTTCCGTTCCCCCTCTTCGGCGGATGGTAACAACCTTACCG ************************************************.(((((..........)))))((((.((((((((((.............(((((((((.((..........)).)))))))))))))))))))(((((.......))))))))).......(((...............((((((((((((........))))........))))))))...............)))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM1528803 follicle cells	SRR060680 9xArg_testes_total	SRR060684 140x9_0-2h_embryos_total	V116 male body	V047 embryo	SRR060686 Argx9_0-2h_embryos_total	SRR060682 9x140_0-2h_embryos_total	SRR060666 160_males_carcasses_total	SRR060658 140_ovaries_total	V053 head
...................................................................................CACTTGCTTGGTAACGGAAGAAAA................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................CTTCCCGAACGGCCACAG........................................................................................................................................................	18	2	2	0.50	1	0	1	0	0	0	0	0	0	0	0
........................................................AAGGTTTGTATAGATTCCG................................................................................................................................................................................................................................	19	2	4	0.25	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................GGAAAGTCGGTTCAAGTGG..................................................................................................................................................................................	19	2	5	0.20	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................GGAAAGGCGGTTCAAGTGGC.................................................................................................................................................................................	20	3	5	0.20	1	0	0	0	1	0	0	0	0	0	0
...................................................................................................GTAGAAAATTCGGTTCAAGTAA..................................................................................................................................................................................	22	3	5	0.20	1	0	0	1	0	0	0	0	0	0	0
.........................................CAATAACGGAGTCTGAAGGT..............................................................................................................................................................................................................................................	20	3	10	0.10	1	0	0	0	1	0	0	0	0	0	0
......................................................................................................GGAAAGGCGGTTCACGTAGC.................................................................................................................................................................................	20	3	10	0.10	1	0	0	0	0	0	1	0	0	0	0
.............................TGCTCTTCGGACCAATAAC...........................................................................................................................................................................................................................................................	19	3	12	0.08	1	0	0	0	0	0	0	1	0	0	0
....................................................ACCAAAGGTTTGACTAGATT...................................................................................................................................................................................................................................	20	3	15	0.07	1	0	0	0	0	0	0	0	1	0	0
.......................................................................................................GAAAGGCGGTTCAAGTGGC.................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................AACGGAATATGTGCGTAGG..........................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	0	1
.................................................................................................CGGAAGAAAATTCGTTTC........................................................................................................................................................................................	18	2	20	0.05	1	0	0	0	0	0	0	0	0	1	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_12875:11889821-11890119 +	dvi_6246	GTTGCGTTGCAAAGTTTTTGTTTTTCTGGACGACCTGCCTGGTTATTGCCGTAGATTTCCAAACTTATCTAAGGTACTTGCAAGTGAACGAACCATTGCCTTCTTTTCAGCCAAGTTCATCGCAGAAAAGAAGTGCTTGCGGGTGTCAAGCTTTATGACAGCCTTATAGACGCATCCACAACGAATAACAAGAGGTTGTCTCGAACAAAGGATTAGCCATTAACCTCTTTATTGATCTCTTAATTGCAGCAGCTCAAGGAAGGCAAGGGGGAGAAGCCGCCTACCATTGTTGGAATGGC
droGri2	scaffold_15245:18282163-18282257 -		GTTAAGATCCAACATTTTTGTCTACCTGGATGATCTG-TTGATAATAGCTCCAGATTTTACAACCCATATAAAATATTTAATAAAA-GTGG----GAGAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	Unknown_singleton_2625:805-903 +		GCTCCGATCAAACGTTTTCGTTTATTTGGACGATCTT-TTGGTGATAGCCCCGGATTTCCAGACGCATCTGCGGTATCTGCGATTG-GTGGCCCAGTGCCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_4:6486624-6486722 +		GCTCCGATCAAACGTTTTCGTTTATTTGGACGATCTT-TTGGTGATAGCCCCGGATTTCCAGACGCATCTGCGGTATCTGCGATTG-GTGGCCCAGTGCCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000448684:1316-1394 -		GCTGAGGACCAACGTCTTCGTCTACCTAGATGACCTG-TTGATTTTGGCTCCAGACTTCCAGACGCATCTGAAGTACTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000760278:967-1044 -		GATCCGCTCCAACGTTTTTGTCTACCTCGATGATCTG-CTGATACTGGCTCCAGATATCCAGACCCACTTCAGGTACCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000415053:26111-26188 +		GATCCGTTCGAACGTTTTCGTTTTCCTAGATGATCTG-TTGATACTGGCCCCAGATATCCAAACCCATTTCAAGTACCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	2R:287108-287185 +		GTTGAGATCGAACGTCTTTGTGTACCTGGACGACCTG-CTAATCATCGCTCCAGACTTCGAGACCCATCTAAAGTATCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4929:25665162-25665237 +		GTTGAGATCGAACGTTTTTGTCTACCTTGACCATCTG-CTCATCATCGTACCGGACTTCGAAACCCATCTGATGTAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

GTTGCGTTGCAAAGTTTTTGTTTTTCTGGACGACCTGCCTGGTTATTGCCGTAGATTTCCAAACTTATCTAAGGTACTTGCAAGTGAACGAACCATTGCCTTCTTTTCAGCCAAGTTCATCGCAGAAAAGAAGTGCTTGCGGGTGTCAAGCTTTATGACAGCCTTATAGACGCATCCACAACGAATAACAAGAGGTTGTCTCGAACAAAGGATTAGCCATTAACCTCTTTATTGATCTCTTAATTGCAGCAGCTCAAGGAAGGCAAGGGGGAGAAGCCGCCTACCATTGTTGGAATGGC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................TTGTTTTTCTGGACGACC........................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0

droGri2

GTTAAGATCCAACATTTTTGTCTACCTGGATGATCTG-TTGATAATAGCTCCAGATTTTACAACCCATATAAAATATTTAATAAAA-GTGG----GAGAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dp5

GCTCCGATCAAACGTTTTCGTTTATTTGGACGATCTT-TTGGTGATAGCCCCGGATTTCCAGACGCATCTGCGGTATCTGCGATTG-GTGGCCCAGTGCCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................................................................TGCGGTATCTGCGATTG-GTGG................................................................................................................................................................................................................	21	1	20.00	20	0	20	0	0	0	0	0	0	0	0
.....................................................................TGCGGTATCTGCGATTG-GTG.................................................................................................................................................................................................................	20	1	19.00	19	0	19	0	0	0	0	0	0	0	0
....................................T-TTGGTGATAGCCCCGGATTTCC...............................................................................................................................................................................................................................................	23	1	11.00	11	0	11	0	0	0	0	0	0	0	0
....................................T-TTGGTGATAGCCCCGGATTTC................................................................................................................................................................................................................................................	22	2	10.50	21	0	21	0	0	0	0	0	0	0	0
..TCCGATCAAACGTTTTCGTTTATT.................................................................................................................................................................................................................................................................................	24	1	10.00	10	0	9	0	0	1	0	0	0	0	0
....................................T-TTGGTGATAGCCCCGGATTTCCA..............................................................................................................................................................................................................................................	24	1	9.00	9	0	8	1	0	0	0	0	0	0	0
....................................T-TTGGTGATAGCCCCGGATTT.................................................................................................................................................................................................................................................	21	2	8.50	17	0	16	1	0	0	0	0	0	0	0
....................................T-TTGGTGATAGCCCCGGATTTCCAGACG..........................................................................................................................................................................................................................................	28	1	8.00	8	0	8	0	0	0	0	0	0	0	0
.....................................................................TGCGGTATCTGCGATTG-GTGGC...............................................................................................................................................................................................................	22	1	7.00	7	0	6	1	0	0	0	0	0	0	0
.....................................................................TGCGGTATCTGCGATTG-GTGGCC..............................................................................................................................................................................................................	23	1	7.00	7	0	3	4	0	0	0	0	0	0	0
.....................................................................TGCGGTATCTGCGATTG-GT..................................................................................................................................................................................................................	19	1	6.00	6	0	5	0	0	1	0	0	0	0	0
...................................................................TCTGCGGTATCTGCGATTG-GTGG................................................................................................................................................................................................................	23	1	5.00	5	0	3	1	0	1	0	0	0	0	0
...................................................................TCTGCGGTATCTGCGATTG-GTGGCCC.............................................................................................................................................................................................................	26	1	5.00	5	0	5	0	0	0	0	0	0	0	0
.....................................................................TGCGGTATCTGCGATTG-GTGGCCCAG...........................................................................................................................................................................................................	26	1	5.00	5	0	5	0	0	0	0	0	0	0	0
...................................................................TCTGCGGTATCTGCGATTG-GT..................................................................................................................................................................................................................	21	1	4.00	4	0	4	0	0	0	0	0	0	0	0
..........................................................................TATCTGCGATTG-GTGGCCCAGT..........................................................................................................................................................................................................	22	3	3.33	10	0	8	2	0	0	0	0	0	0	0
.......TCAAACGTTTTCGTTTATTTGGACGATC........................................................................................................................................................................................................................................................................	28	5	3.20	16	0	16	0	0	0	0	0	0	0	0
.......TCAAACGTTTTCGTTTATTTGGACGA..........................................................................................................................................................................................................................................................................	26	5	3.20	16	0	15	0	0	0	0	0	1	0	0
...................................................................TCTGCGGTATCTGCGATTG-GTGGCC..............................................................................................................................................................................................................	25	1	3.00	3	0	3	0	0	0	0	0	0	0	0
....................................T-TTGGTGATAGCCCCGGATT..................................................................................................................................................................................................................................................	20	2	3.00	6	0	6	0	0	0	0	0	0	0	0
...................................................................TCTGCGGTATCTGCGATTG-GTG.................................................................................................................................................................................................................	22	1	3.00	3	0	2	0	0	1	0	0	0	0	0
......................................TTGGTGATAGCCCCGGATTTCCA..............................................................................................................................................................................................................................................	23	1	3.00	3	0	3	0	0	0	0	0	0	0	0
....................................T-TTGGTGATAGCCCCGGATTTCCAG.............................................................................................................................................................................................................................................	25	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.......................................................TTTCCAGACGCATCTGCGGTATC.............................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.................................................................CATCTGCGGTATCTGCGATTG-G...................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	2	0	0
....................................T-TTGGTGATAGCCCCGGATTTCCAGA............................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
......................TATTTGGACGATCTT-TTGGTGATAGC..........................................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................TCTGCGGTATCTGCGATTG-GTGGC...............................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
......................................................................GCGGTATCTGCGATTG-GTG.................................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.......................................TGGTGATAGCCCCGGATTTCCAGAC...........................................................................................................................................................................................................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0
.....................................................................TGCGGTATCTGCGATTG-G...................................................................................................................................................................................................................	18	1	2.00	2	0	1	0	0	1	0	0	0	0	0
.....................................................................TGCGGTATCTGCGATTG-GTGGCCC.............................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
....................................T-TTGGTGATAGCCCCGGAT...................................................................................................................................................................................................................................................	19	2	2.00	4	0	4	0	0	0	0	0	0	0	0
......................................TTGGTGATAGCCCCGGATTTC................................................................................................................................................................................................................................................	21	2	1.50	3	0	3	0	0	0	0	0	0	0	0
..........................................................................TATCTGCGATTG-GTGGCCCAGTGC........................................................................................................................................................................................................	24	3	1.33	4	0	4	0	0	0	0	0	0	0	0
..........................................................................TATCTGCGATTG-GTGGCCCAGTGCCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	26	3	1.33	4	0	4	0	0	0	0	0	0	0	0
..........................................................................TATCTGCGATTG-GTGGCCCAGTGCC.......................................................................................................................................................................................................	25	3	1.33	4	0	4	0	0	0	0	0	0	0	0
......................TATTTGGACGATCTT-TTGGTGA..............................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................TCTGCGGTATCTGCGATTG-GTGGCA..............................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................TCTGCGGTATCTGCGATTG-GTGGCTT.............................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................GGTGATAGCCCCGGATTTCCAG.............................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................TCTGCGGTATCTGCGATTG-GTAAA...............................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................TTGGACGATCTT-TTGGTGATAGCC.........................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................TGCGGTATCTGCGATTG-GTAAA...............................................................................................................................................................................................................	22	2	1.00	2	0	2	0	0	0	0	0	0	0	0
......................................TTGGTGATAGCCCCGGATTT.................................................................................................................................................................................................................................................	20	2	1.00	2	0	2	0	0	0	0	0	0	0	0
........................................................TTCCAGACGCATCTGCGGTATCT............................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................CTGCGGTATCTGCGATTG-GTGGCCC.............................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................GATAGCCCCGGATTTCCAGACGCATC......................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................TGGTGATAGCCCCGGATTTCCA..............................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................CATCTGCGGTATCTGCGATTG-GAAA................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................TGCGGTATCTGCGATTG-GTGT................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.........................................................TCCAGACGCATCTGCGGTATCTGC..........................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................TT-TTGGTGATAGCCCCGGATTTCC...............................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................TATCTGCGATTG-GTGGCCCAGTG.........................................................................................................................................................................................................	23	3	1.00	3	0	3	0	0	0	0	0	0	0	0
......................................................................GCGGTATCTGCGATTG-GTGGCCCAG...........................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..TCCGATCAAACGTTTTCGTTTATTTG...............................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................TGATAGCCCCGGATTTCCAGACGCATC......................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................ATTTGGACGATCTT-TTGGTGATAGTT.........................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................TCTGCGGTATCTGCGATTG-GTGGCCA.............................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................CATCTGCGGTATCTGCGATTG-GTG.................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................TGGACGATCTT-TTGGTGATAGCCCCGG.....................................................................................................................................................................................................................................................	27	2	1.00	2	0	1	1	0	0	0	0	0	0	0
....................................................................CTGCGGTATCTGCGATTG-G...................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................TTGGTGATAGCCCCGGATTTCCAGA............................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......................................................................CGGTATCTGCGATTG-GTGG................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................GTATCTGCGATTG-GTGGCCCAG...........................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................TTATTTGGACGATCTT-TTGGTG...............................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................TGCGGTATCTGCGATTG-GTGGCCCAGTG.........................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..TCCGATCAAACGTTTTCGTTTAT..................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................TTGGTGATAGCCCCGGATTTCCAGACGC.........................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................T-TTGGTGATAGCCCCGGATTTCCAGAC...........................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.CTCCGATCAAACGTTTTCGTTTATT.................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................TATCTGCGATTG-GTGGCCCAG...........................................................................................................................................................................................................	21	3	1.00	3	0	2	1	0	0	0	0	0	0	0
...................................TT-TTGGTGATAGCCCCGGATTTCCAGA............................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................ATCTGCGGTATCTGCGATTG-GTG.................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................TGCGGTATCTGCGATTG-GA..................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.CTCCGATCAAACGTTTTCGTTTAT..................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................CGGTATCTGCGATTG-GTG.................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................TGCGGTATCTGCGATTG-GTGGCCCA............................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................T-TTGGTGATAGCCCCGGATTTA................................................................................................................................................................................................................................................	22	2	1.00	2	0	1	1	0	0	0	0	0	0	0
........CAAACGTTTTCGTTTATTTGGACGATC........................................................................................................................................................................................................................................................................	27	5	1.00	5	0	5	0	0	0	0	0	0	0	0
.........................................................................GTATCTGCGATTG-GTGGCCCAGTGCC.......................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................GCGGTATCTGCGATTG-GTGG................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................TGGTGATAGCCCCGGATTTCCAGACG..........................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................TTGGACGATCTT-TTGGTGATAGCCC........................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................ATCTGCGGTATCTGCGATTG-G...................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.....................................................................TGCGGTATCTGCGATTG-GTA.................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................GCGGTATCTGCGATTG-GT..................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................T-TTGGTGATAGCCCCGGATA..................................................................................................................................................................................................................................................	20	2	1.00	2	0	2	0	0	0	0	0	0	0	0
.....................................................................TGCGGTATCTGCGATTG-GTGGCCT.............................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................GCGGTATCTGCGATTG-GTGGCCC.............................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......TCAAACGTTTTCGTTTATTTGGACG...........................................................................................................................................................................................................................................................................	25	5	0.80	4	0	4	0	0	0	0	0	0	0	0
.......TCAAACGTTTTCGTTTATTTGGAC............................................................................................................................................................................................................................................................................	24	5	0.80	4	0	4	0	0	0	0	0	0	0	0
............................................................................TCTGCGATTG-GTGGCCCAGTG.........................................................................................................................................................................................................	21	4	0.75	3	0	3	0	0	0	0	0	0	0	0
..........................................................................TATCTGCGATTG-GTGGCCC.............................................................................................................................................................................................................	19	3	0.67	2	0	2	0	0	0	0	0	0	0	0
....................................T-TTGGTGATAGCCCCGGATAA.................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................T-TTGGTGATAGCCCCGGATAAA................................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
............................................................................TCTGCGATTG-GTGGCCCAGT..........................................................................................................................................................................................................	20	4	0.50	2	0	2	0	0	0	0	0	0	0	0
..................................CTT-TTGGTGATAGCCCCGGATT..................................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................TGCGGTATCTGCGATTG-GTAA................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................TTGGTGATAGCCCCGGATT..................................................................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................TCGTTTATTTGGACGATCTT-TTGG.................................................................................................................................................................................................................................................................	24	5	0.40	2	0	2	0	0	0	0	0	0	0	0
.......TCAAACGTTTTCGTTTATTTGGACGATA........................................................................................................................................................................................................................................................................	28	5	0.40	2	0	2	0	0	0	0	0	0	0	0
.........AAACGTTTTCGTTTATTTGGACGATC........................................................................................................................................................................................................................................................................	26	5	0.40	2	0	2	0	0	0	0	0	0	0	0
............................GACGATCTT-TTGGTGATAGCCC........................................................................................................................................................................................................................................................	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...............................GATCTT-TTGGTGATAGCC.........................................................................................................................................................................................................................................................	18	3	0.33	1	0	1	0	0	0	0	0	0	0	0
............................GACGATCTT-TTGGTGATAG...........................................................................................................................................................................................................................................................	19	3	0.33	1	0	1	0	0	0	0	0	0	0	0
....................................T-TTGGTGATAGCCCCGGA....................................................................................................................................................................................................................................................	18	3	0.33	1	0	0	1	0	0	0	0	0	0	0
..........................................................................TATCTGCGATTG-GTGGCCCA............................................................................................................................................................................................................	20	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..............................................................................TGCGATTG-GTGGCCCAGTGC........................................................................................................................................................................................................	20	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.............................................................................CTGCGATTG-GTGGCCCAGTG.........................................................................................................................................................................................................	20	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...........................................................................ATCTGCGATTG-GTGGCCCAGT..........................................................................................................................................................................................................	21	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..............................................................................TGCGATTG-GTGGCCCAGTGCCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	22	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.....GATCAAACGTTTTCGTTTATTTGGACG...........................................................................................................................................................................................................................................................................	27	5	0.20	1	0	1	0	0	0	0	0	0	0	0
...............TTTCGTTTATTTGGACGATCTT-TTGG.................................................................................................................................................................................................................................................................	26	5	0.20	1	0	0	0	0	0	0	0	1	0	0
......................................................................GCGGTATCTGCGATTG-GTAAA...............................................................................................................................................................................................................	21	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.......TCAAACGTTTTCGTTTATTTGGACA...........................................................................................................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0
...............TTTCGTTTATTTGGACGATCTT-TTG..................................................................................................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0
..........AACGTTTTCGTTTATTTGGACGATC........................................................................................................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0
........CAAACGTTTTCGTTTATTTGGA.............................................................................................................................................................................................................................................................................	22	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.......TCAAACGTTTTCGTTTATTTGGACGATCT.......................................................................................................................................................................................................................................................................	29	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.......TCAAACGTTTTCGTTTATTTGGAAA...........................................................................................................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.............GTTTTCGTTTATTTGGACG...........................................................................................................................................................................................................................................................................	19	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.............................................TAGCCCCGGATTTCCAGACG..........................................................................................................................................................................................................................................	20	5	0.20	1	0	1	0	0	0	0	0	0	0	0
...................................................CGGATTTCCAGACGCATCTG....................................................................................................................................................................................................................................	20	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.......TCAAACGTTTTCGTTTATTTGGACGATT........................................................................................................................................................................................................................................................................	28	5	0.20	1	0	1	0	0	0	0	0	0	0	0
........CAAACGTTTTCGTTTATTTGGACG...........................................................................................................................................................................................................................................................................	24	5	0.20	1	0	1	0	0	0	0	0	0	0	0
..........................................................................TATCTGCGATTG-GTGGCAA.............................................................................................................................................................................................................	19	6	0.17	1	0	1	0	0	0	0	0	0	0	0

droPer2

GCTCCGATCAAACGTTTTCGTTTATTTGGACGATCTT-TTGGTGATAGCCCCGGATTTCCAGACGCATCTGCGGTATCTGCGATTG-GTGGCCCAGTGCCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......TCAAACGTTTTCGTTTATTTGGACGATC........................................................................................................................................................................................................................................................................	28	8	0.88	7	2	5	0	0	0	0
..........................................................................TATCTGCGATTG-GTGGCCCAGTG.........................................................................................................................................................................................................	23	10	0.80	8	1	3	0	0	0	4
..........................................................................TATCTGCGATTG-GTGGCCCAGTGC........................................................................................................................................................................................................	24	10	0.70	7	0	6	0	0	0	1
.......TCAAACGTTTTCGTTTATTTGGACGA..........................................................................................................................................................................................................................................................................	26	8	0.50	4	0	4	0	0	0	0
.....................................................................TGCGGTATCTGCGATTG-GTGGC...............................................................................................................................................................................................................	22	6	0.50	3	0	3	0	0	0	0
..........................................................................TATCTGCGATTG-GTGGCCCAGTGCC.......................................................................................................................................................................................................	25	10	0.40	4	0	4	0	0	0	0
...................................................................TCTGCGGTATCTGCGATTG-GTGG................................................................................................................................................................................................................	23	6	0.33	2	0	2	0	0	0	0
.....................................................................TGCGGTATCTGCGATTG-GTGGCC..............................................................................................................................................................................................................	23	6	0.33	2	1	1	0	0	0	0
.....................................................................TGCGGTATCTGCGATTG-GTA.................................................................................................................................................................................................................	20	6	0.33	2	0	2	0	0	0	0
............................................................................TCTGCGATTG-GTGGCCCAGTGC........................................................................................................................................................................................................	22	10	0.30	3	0	3	0	0	0	0
.....................................................................TGCGGTATCTGCGATTG-G...................................................................................................................................................................................................................	18	6	0.17	1	0	1	0	0	0	0
..................................................................ATCTGCGGTATCTGCGATTG-GTG.................................................................................................................................................................................................................	23	6	0.17	1	0	1	0	0	0	0
.....................................................................TGCGGTATCTGCGATTG-GTGGCCA.............................................................................................................................................................................................................	24	6	0.17	1	0	1	0	0	0	0
...................................................................TCTGCGGTATCTGCGATTG-GTGGCCT.............................................................................................................................................................................................................	26	6	0.17	1	1	0	0	0	0	0
.....................................................................TGCGGTATCTGCGATTG-GTG.................................................................................................................................................................................................................	20	6	0.17	1	0	1	0	0	0	0
.....................................................................TGCGGTATCTGCGATTG-GTGG................................................................................................................................................................................................................	21	6	0.17	1	0	1	0	0	0	0
.................TCGTTTATTTGGACGATCTT-TTGGTG...............................................................................................................................................................................................................................................................	26	6	0.17	1	0	0	1	0	0	0
....................TTTATTTGGACGATCTT-TTGGTGA..............................................................................................................................................................................................................................................................	24	6	0.17	1	0	1	0	0	0	0
....................................T-TTGGTGATAGCCCCGGATTTCCA..............................................................................................................................................................................................................................................	24	6	0.17	1	0	1	0	0	0	0
.....................TTATTTGGACGATCTT-TTGGTGATAGC..........................................................................................................................................................................................................................................................	27	6	0.17	1	0	1	0	0	0	0
...................................................................TCTGCGGTATCTGCGATTG-G...................................................................................................................................................................................................................	20	6	0.17	1	0	1	0	0	0	0
......................TATTTGGACGATCTT-TTGGTGATAGCCC........................................................................................................................................................................................................................................................	28	6	0.17	1	0	1	0	0	0	0
.................................................................CATCTGCGGTATCTGCGATTG-....................................................................................................................................................................................................................	21	6	0.17	1	0	1	0	0	0	0
...............................................................CGCATCTGCGGTATCTGCGATTG-GTGG................................................................................................................................................................................................................	27	6	0.17	1	0	1	0	0	0	0
.....................................................................TGCGGTATCTGCGATTG-GT..................................................................................................................................................................................................................	19	6	0.17	1	0	1	0	0	0	0
...................................................................TCTGCGGTATCTGCGATTG-GTGGCCC.............................................................................................................................................................................................................	26	6	0.17	1	0	0	1	0	0	0
......................TATTTGGACGATCTT-TTGGTGATAG...........................................................................................................................................................................................................................................................	25	6	0.17	1	0	1	0	0	0	0
..TCCGATCAAACGTTTTCGTTTATT.................................................................................................................................................................................................................................................................................	24	6	0.17	1	0	0	1	0	0	0
...................................................................TCTGCGGTATCTGCGATTG-GT..................................................................................................................................................................................................................	21	6	0.17	1	0	1	0	0	0	0
....................................T-TTGGTGATAGCCCCGGATTTCC...............................................................................................................................................................................................................................................	23	6	0.17	1	0	1	0	0	0	0
....................TTTATTTGGACGATCTT-TTGGTGATAG...........................................................................................................................................................................................................................................................	27	6	0.17	1	0	1	0	0	0	0
....................................T-TTGGTGATAGCCCCGGATT..................................................................................................................................................................................................................................................	20	7	0.14	1	0	1	0	0	0	0
.......................................TGGTGATAGCCCCGGATT..................................................................................................................................................................................................................................................	18	7	0.14	1	0	1	0	0	0	0
....................................T-TTGGTGATAGCCCCGGATTTC................................................................................................................................................................................................................................................	22	7	0.14	1	0	1	0	0	0	0
....................................T-TTGGTGATAGCCCCGGATTT.................................................................................................................................................................................................................................................	21	7	0.14	1	0	1	0	0	0	0
.........AAACGTTTTCGTTTATTTGGACGATC........................................................................................................................................................................................................................................................................	26	8	0.13	1	0	1	0	0	0	0
.....GATCAAACGTTTTCGTTTATTTGGACGA..........................................................................................................................................................................................................................................................................	28	8	0.13	1	0	1	0	0	0	0
.......TCAAACGTTTTCGTTTATTTGGAC............................................................................................................................................................................................................................................................................	24	8	0.13	1	1	0	0	0	0	0
.....GATCAAACGTTTTCGTTTATTTGGACG...........................................................................................................................................................................................................................................................................	27	8	0.13	1	0	1	0	0	0	0
..........................................................................TATCTGCGATTG-GTGGCCCA............................................................................................................................................................................................................	20	10	0.10	1	0	1	0	0	0	0
..............................................................................TGCGATTG-GTGGCCCAGTGCCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	22	10	0.10	1	0	1	0	0	0	0
..........................................................................TATCTGCGATTG-GTGGCCCAG...........................................................................................................................................................................................................	21	10	0.10	1	0	1	0	0	0	0
...............................................................................GCGATTG-GTGGCCCAGTGC........................................................................................................................................................................................................	19	10	0.10	1	0	1	0	0	0	0
..........................................................................TATCTGCGATTG-GTGGCCCAGTGAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	26	10	0.10	1	0	1	0	0	0	0
..............................................................................TGCGATTG-GTGGCCCAGTGC........................................................................................................................................................................................................	20	10	0.10	1	0	1	0	0	0	0
.............................................................................CTGCGATTG-GTGGCCCAGTGCA.......................................................................................................................................................................................................	22	10	0.10	1	0	1	0	0	0	0
..........................................................................TATCTGCGATTG-GTGGCCC.............................................................................................................................................................................................................	19	10	0.10	1	0	1	0	0	0	0
..........................................................................TATCTGCGATTG-GTGGCCCAGT..........................................................................................................................................................................................................	22	10	0.10	1	0	0	0	0	0	1
............................................................................TCTGCGATTG-GTGGCCCAGTG.........................................................................................................................................................................................................	21	10	0.10	1	0	1	0	0	0	0
..................................................................................ATTG-GTGGCCCAGTGCCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	18	11	0.09	1	0	1	0	0	0	0
..........................................................................TATCTGCGATTG-GTGGCTT.............................................................................................................................................................................................................	19	11	0.09	1	0	0	0	0	0	1

droFic1

GCTGAGGACCAACGTCTTCGTCTACCTAGATGACCTG-TTGATTTTGGCTCCAGACTTCCAGACGCATCTGAAGTACTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GATCCGCTCCAACGTTTTTGTCTACCTCGATGATCTG-CTGATACTGGCTCCAGATATCCAGACCCACTTCAGGTACCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GATCCGTTCGAACGTTTTCGTTTTCCTAGATGATCTG-TTGATACTGGCCCCAGATATCCAAACCCATTTCAAGTACCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droYak3

GTTGAGATCGAACGTCTTTGTGTACCTGGACGACCTG-CTAATCATCGCTCCAGACTTCGAGACCCATCTAAAGTATCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..........AACGTCTTTGTGTACCTGGACGACC........................................................................................................................................................................................................................................................................	25	7	1.00	7	0	3	3	0	1	0	0	0	0	0	0
...................................TG-CTAATCATCGCTCCAGACTTCGAGA............................................................................................................................................................................................................................................	27	9	0.67	6	0	0	0	0	0	0	0	0	0	0	6
.......................................TAATCATCGCTCCAGACTTCGAGACCC.........................................................................................................................................................................................................................................	27	9	0.33	3	0	2	1	0	0	0	0	0	0	0	0
.......................................TAATCATCGCTCCAGACTTCGAGACC..........................................................................................................................................................................................................................................	26	9	0.33	3	0	0	3	0	0	0	0	0	0	0	0
........................................AATCATCGCTCCAGACTTCGAGACC..........................................................................................................................................................................................................................................	25	9	0.22	2	0	1	1	0	0	0	0	0	0	0	0
.........................CTGGACGACCTG-CTAATCATCGCT.........................................................................................................................................................................................................................................................	24	9	0.22	2	0	2	0	0	0	0	0	0	0	0	0
..........AACGTCTTTGTGTACCTGGAC............................................................................................................................................................................................................................................................................	21	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
...................GTGTACCTGGACGACCTG-CTAAT................................................................................................................................................................................................................................................................	23	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
..............TCTTTGTGTACCTGGACGACCTG-.....................................................................................................................................................................................................................................................................	23	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
..........AACGTCTTTGTGTACCTGGACGACCT.......................................................................................................................................................................................................................................................................	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
...........ACGTCTTTGTGTACCTGGACGACC........................................................................................................................................................................................................................................................................	24	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
............CGTCTTTGTGTACCTGGACGACCTG-C....................................................................................................................................................................................................................................................................	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
......................TACCTGGACGACCTG-CTAATCATCGC..........................................................................................................................................................................................................................................................	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
...........ACGTCTTTGTGTACCTGGAC............................................................................................................................................................................................................................................................................	20	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
............CGTCTTTGTGTACCTGGACGAC.........................................................................................................................................................................................................................................................................	22	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
..................TGTGTACCTGGACGACCTG-CTAATCA..............................................................................................................................................................................................................................................................	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
..............TCTTTGTGTACCTGGACGACC........................................................................................................................................................................................................................................................................	21	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
..TGAGATCGAACGTCTTTGTGTACCTGG..............................................................................................................................................................................................................................................................................	27	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
..............TCTTTGTGTACCTGGACGACCTG-C....................................................................................................................................................................................................................................................................	24	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
..........AACGTCTTTGTGTACCTGGACGACCTG-C....................................................................................................................................................................................................................................................................	28	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
..........................................TCATCGCTCCAGACTTCGAGACCC.........................................................................................................................................................................................................................................	24	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
...................................TG-CTAATCATCGCTCCAGACTTC................................................................................................................................................................................................................................................	23	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0
.......TCGAACGTCTTTGTGTACCTG...............................................................................................................................................................................................................................................................................	21	9	0.11	1	0	0	0	0	0	0	1	0	0	0	0
.......................................TAATCATCGCTCCAGACTTCGA..............................................................................................................................................................................................................................................	22	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
..TGAGATCGAACGTCTTTGTGTACCT................................................................................................................................................................................................................................................................................	25	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
.........................................ATCATCGCTCCAGACTTCGAGA............................................................................................................................................................................................................................................	22	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
.........................CTGGACGACCTG-CTAATCATCGCTCC.......................................................................................................................................................................................................................................................	26	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
..TGAGATCGAACGTCTTTGTGTACCTG...............................................................................................................................................................................................................................................................................	26	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................GACTTCGAGACCCATCTAAAGTA...............................................................................................................................................................................................................................	23	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
....................................G-CTAATCATCGCTCCAGACTTCGAGACC..........................................................................................................................................................................................................................................	28	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

GTTGAGATCGAACGTTTTTGTCTACCTTGACCATCTG-CTCATCATCGTACCGGACTTCGAAACCCATCTGATGTAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dvi_6246

scaffold_12875:11889871-11890069 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads