ID:

dvi_6160

 Coordinate:

scaffold_12875:11645267-11645540 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-43.1 -43.1 -43.1

Flybase annnotation

CDS [Dvir\GJ20490-cds]; exon [dvir_GLEANR_5923:4]; CDS [Dvir\GJ20490-cds]; exon [dvir_GLEANR_5923:3]; intron [Dvir\GJ20490-in]

Repeatable elements

NameClassFamilyStrand
A-richLow_complexityLow_complexity+
(GA)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCGGAGAGCGGCAGCAGCGGGAGCGTGAAAAGCAAAGCGGCTAATCTTAGGTAAGTCTCTCTCTCTCTGTCTCTCCCTCTCTAAAATGGGGCAGCTTCCGATCGGGATCGTCCCACCAAGATATGTGTAACTATTTCTTATGGTTTTTTTTTTTAATTTATAACTTTTTGTAACATATTTATATATGTTTGTAATTTTGTATTTTGTATTTTGAATTTTTGTACATGTTTTTTGTATATTTTTGCATATTTTTTTGTTTTTGGTTTCTTTGCCGGGCATTTTGGTTAAACCCCAATTCCACCAATCGAACCGACACATCCACAGTATCTCGTTAGGCAATAGTTTTGTAAATAGTTCAATTACAAAAACAACAA
**************************************************................((((................((((((....(((.....)))..))))))..(((((((((..((((((.....))))))........(((..(((((..((....(((((((....)))))))...))..)))))..))).............((((((.......)))))).....)))))))))..(((..(((((((..(((..(((.(((..(((...)))..))))))..)))..))))))).)))...))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060661
160x9_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060689
160x9_testes_total
 SRR1106719
embryo_8-10h
 V047
embryo
 V053
head
 SRR060668
160x9_males_carcasses_total
 SRR060679
140x9_testes_total
 SRR060683
160_testes_total
 SRR060665
9_females_carcasses_total
 SRR060666
160_males_carcasses_total
..........................................................................................................................................................................................................................................................................................................CACCAATCGAACCGACACATCCACAG.................................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................ACATCCACAGTATCTCGTTA........................................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................CCAATCGAACCGACACATCCACAG.................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................CGTTAGGCAATAGTTTTGTAA........................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........GCAGCAGCGGGAGCGTGAAA........................................................................................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................GTTAGGCAATAGTTTTGT.......................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................GTCTTATGGTATTTTTTTTTGATTT....................................................................................................................................................................................................................... 25 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................TTCTTATGGTATTTTTTTTTTATTCA...................................................................................................................................................................................................................... 26 3 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................TTTATGTTCGTAATTATGTATTTT......................................................................................................................................................................... 24 3 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................................CCCCAATTTCTCCAAGCGA.................................................................. 19 3 16 0.13 2 0 0 0 0 0 0 0 0 0 0 0 1 1
..................................................................................................................................................................................TTATATATGTGTGTAATGTTG............................................................................................................................................................................... 21 2 9 0.11 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................................................................TTTGGCGGGCCTTTTGGT......................................................................................... 18 2 10 0.10 1 0 0 0 0 0 0 0 1 0 0 0 0 0
............AGGAGCGGGAGTGTGAATAG...................................................................................................................................................................................................................................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................TTCTTATGGTATTTTGTTTTTAT......................................................................................................................................................................................................................... 23 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................TTCTTATGGTATTTGTTTTTTAT......................................................................................................................................................................................................................... 23 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

AGCCTCTCGCCGTCGTCGCCCTCGCACTTTTCGTTTCGCCGATTAGAATCCATTCAGAGAGAGAGAGACAGAGAGGGAGAGATTTTACCCCGTCGAAGGCTAGCCCTAGCAGGGTGGTTCTATACACATTGATAAAGAATACCAAAAAAAAAAATTAAATATTGAAAAACATTGTATAAATATATACAAACATTAAAACATAAAACATAAAACTTAAAAACATGTACAAAAAACATATAAAAACGTATAAAAAAACAAAAACCAAAGAAACGGCCCGTAAAACCAATTTGGGGTTAAGGTGGTTAGCTTGGCTGTGTAGGTGTCATAGAGCAATCCGTTATCAAAACATTTATCAAGTTAATGTTTTTGTTGTT
**************************************************................((((................((((((....(((.....)))..))))))..(((((((((..((((((.....))))))........(((..(((((..((....(((((((....)))))))...))..)))))..))).............((((((.......)))))).....)))))))))..(((..(((((((..(((..(((.(((..(((...)))..))))))..)))..))))))).)))...))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 SRR060686
Argx9_0-2h_embryos_total
 V116
male body		 SRR060685
9xArg_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060678
9x140_testes_total
 SRR060679
140x9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 V047
embryo
 SRR060687
9_0-2h_embryos_total
.............................................................................AGAAATATTACCCCGTCGAA..................................................................................................................................................................................................................................................................................... 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................TGCCTCTGTAGGTGTAATAGAGC........................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................AAACCAATTTGGGGATAAT............................................................................ 19 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................TGTGGGGTTAAGGAGGTT...................................................................... 18 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................AGCTTGGGTGTGCAGGAGT................................................... 19 3 13 0.46 6 0 0 0 0 4 0 0 1 1 0 0
................................................................................................................................................................................................................................................................................................................................................GTTGTCAAAACATTTATTAGGT................ 22 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................AAAACCAATGGGGGGTTAAT............................................................................ 20 3 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................................................CAAAGATACCGCCCGTAA.............................................................................................. 18 2 15 0.07 1 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................AAAAAAAAAAATTAAATATCG.................................................................................................................................................................................................................. 21 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
...................................TCGCAGATTAGAACCCAG................................................................................................................................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................AGCTTGGGTGTGCAGGAG.................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
................................................................................................................................TTGAAAAAGAAGACCAAAA................................................................................................................................................................................................................................... 19 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:11645217-11645590 - dvi_6160 TCGGAGAGCGGCAGC------A---------------------GCGGGAGCGTGAAAAGCAAAGCGGCTAATCTTAGGTAAGTCTC-TCTCTC-TCTGT--CTCTCCCTCTCTAAAATGGGGCA------G-----------------CT-TCCGAT-------CGGGATCG------------------------------------------TCCC---------------------------------------------------------------------------------------------------AC----CAA-----------GATAT-------------------GTGTAACTATTTCTTATGGTTTTTTTTTTTAATTTATAACTTTTTGT-----------------------------------AACATATTTATAT--------ATGTTTG---------TAATTTTGT--------------ATT--------------------------------------------------------------------------------------------TTGTATTTTGAATTTTTG---TACATGT-----------------------------------------------TTTTTGTATATTTT--------------------------TGCATATTTTTTTGTTTT-----------T----G-------------G-TTTC-TTTGCCGGGCAT-----T-TTGGTTAAACC-C-------------CAATTCC-----------------------------------------A------C---------------------------------CAAT--CGAACCGACA-------------------------------------------------------------------------------------CAT--CC-ACAGTATCTCGTTAGGCAATAGTTTTGTAAATAGTTCAATTACAAA------AACAACAA
droMoj3 scaffold_6496:15223424-15223802 + TCGGAGAGCGGCAGCAACAGCA---------------------GCGGCAGCGTGAAGAGCAAAGCGGCTAATCTTAGGTGAGTCCCATCTCAA-TCTGG--CC-----------AACTGGCGGAATGCCTG-----------------CT-TGGGTGC-------GGGC-----------------------------------------------TG------------------------------------------------------------------------------------------------------------------------AAAC-------------------------GGA----------------------------------------------------------------------------------------------ATGTTTG---------TAATTATGTTTGATATATTTCAATTTTTGAATTTTG-CATTTTTTGTATTTCTCTAATTTTATTCCTT----------------------------------------------------------------------------------TTTTA------------------------------TG-AATTTTTTT-GAAAATTTA------------AA---------A---------TTTTTTGTTTT-----------T----T-------------GGTTTC-TTTGCCGGGACTTT---AATTGGTTAACAA-CTC------------------------------------------------------------------------------------CTGGTCCAAA-TACACCA--CACACACACACAC--AC------------A-----------------------CACA---------------------CA-CG----CATACACACCTGT--AC-ACAGTATCTCGTTAGGCAATAGTTTTGTAAATAGTTCAATTACAAA------AACAACAA
droGri2 scaffold_15245:6581514-6581816 + TCGGAGAGCAGCAGC------A---------------------GCGGGAGCGTGAAAGCCAAGGCGGCAAATCTTAGGTGAGTTTT----------------------------------------G--GTGTTCGAA----------T-TGGGTTTTTTTTTTTGGGATCT------------------------------------------GATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCT-----------------------------------GA-----------------------------------------------------------TCTGGTTTCTTGACATTATTTG-ATTTTTCACATTTAATTTCTTTTTGTATAATTT---------TGT-TTT------------------------------------------------------------------------------------------------------GTAAATTGT------------T-GC-------A--------TTTGTTTGTTTTC----------T----T-------------GGTTTC-TTTGCCGGGCATATACACTTTGGTTCAAAT-CCCAA---TCCAAC-----------------------------------------------------------------------------------------CAAT--AT-ATCCAC-------------------------------------------------------------------------------A------CAT--CCAACAGTATCTCGTTAGGCAATAGTTTTGTAAATAGTTCAATTACAAA--------------
droWil2 scf2_1100000004513:4906019-4906402 + TCGGATAGCGGGAGCAACAGCA---------------------GTGGCAGTGTCAAGAGCAAGGCAGCCAATTTGAAGTAAGTTTT-TTTTGCATATATGTAT-----------AT---ATGGCATG-TTGTTTGGGTTGATTAGATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT------------------TATACAAA-TAATATACATATACATATACATCTATTGTTACGTAAAAATTTTGATATAC--------------------------------------------------------------------------------------------------------------------------------------AAGAAATTTTATTT--------------CGGTTTTTGTA-------------------------------CATTTTTGT-TAAAATTTG-----------------------ATT---ATATCTTTTTATTT---------------------------------TTTC-TTTATCGGGAAT-----TTGT-GTTATCCTACACAC---AC-AC---------------------------------------------------------T-ACTACTA------------------------------------C-AAC--TCTGTTCACATTACCCACAATATCCTT------------------------------------------ACCTGAA-----CCACCACA-ACAGTATCTCGTTAGGCAATAATTTTGTAAATAATTCGATTGCAAAATCGAAATCAACAT
dp5 3:19361233-19361593 + TCGGAGAGCGGCAGCAACAGCA---------------------GTGGCAGCGTCAAGAGAAAGGCGGGCAATCTGAAGTAAGTTTA-------------------------------------------TGCTTGGATCCACCAGCAGT-CCG--------------GCACC------------------------------------------TCC------------------------------------------------------------------------------------------------------------------------GACAT---------------------------------------------------------------------------------------------------------------------------------------------------TTGATACTCTT-----------------------------------------------------------------------------------------------------------------------------------------------TTTTATTTTTTTTTTT-ATTTTTGAAACTTTTGT-TAAAATTCC------------AC---------ATT---TTCTTTCTTTATTTT-----------CGGGTG-------------GATTTC-TTTGCCGGGCAT-----TCGTGGTTATCTT-C-------------CTATCCC-----------------------------------------A------CCCGCC--CAACCACCCACTCACCCAAACCACACCA--C-----------------------------------ACCACACACCCATCACAAATACAAACTAC----AAACGACGC-----TATCCAT----GG-TAT--CC-ACAGTATCTCGTTAGGGAATAGTTTTGTAAATAGTTCGATGGCAAA------AACCACTG
droPer2 scaffold_37:361086-361445 + TCGGAGAGCGGCAGCAACAGCA---------------------GTGGCAGCGTCAAGAGAAAGGCGGGCAATCTGAAGTAAGTTTA-------------------------------------------TGCTTGGATCCACCAGCAGT-CCG--------------GCACC------------------------------------------TCC------------------------------------------------------------------------------------------------------------------------GACAT---------------------------------------------------------------------------------------------------------------------------------------------------TTGATACTCTT-----------------------------------------------------------------------------------------------------------------------------------------------TTTTATTTTTT-TTTT-ATTTTTGAAACTTTTGT-TAAAATTCC------------AC---------ATT---TTCTTTCTTTATTTT-----------CGGGTG-------------GATTTC-TTTGCCGGGCAT-----TCGTGGTTATCTT-C-------------CTATCCC-----------------------------------------A------CCCGCC--CAACCACCCACTCACCCAAACCACACCA--C-----------------------------------ACCACACACCCATCACAAATACAAACTAC----AAACGACGC-----TATCCAT----GG-TAT--CC-ACAGTATCTCGTTAGGGAATAGTTTTGTAAATAGTTCGATGGCAAA------AACCACTG
droAna3 scaffold_13417:1439486-1439697 + TTT---------------------------------------------------------------------------------------------T--T-----ACTTTTCTAAAGTAAAGGA------G-----------------GT-TCTAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATT-TAAAAATAGCCA------------------TTAAAATATTCAAACCTATAA---------------------------------------------------------------TGACTATATTT-----------------------------------------------------------------------------------------------------------------------------------------------ATTTATTTATTTTTTAAATCATTGATAGTTATTA-TAAAATTTGGATAGAACACCATT--------ATTT---TTCTTATGTAATGTT-----------CAAAAA-------------AATT-C-TAT-TTAAACAT-----ACCTATATATTTA-C-------------ATATTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGTT----------TTTGG---------------------
droBip1 scf7180000396547:1101402-1101747 + TCGGACAGCGGGAGCAACAACAGCAGCGCCAGTGGCCATGGAGGCGGCAGCGTCAAGAGCAAAGCGGCCAATCTGAAGTGAGTATG----------------------------------------G--TGGCTGGAGCTATCACTAGC-TGGGGTTCTGACCTCGGGGTGG------------------------------------------GCCT------------------------------------------------------------------------------------------------------------------------ACACC---TGGTTCGGTTGGG-T-------------------------------------------------------------------------------------------------------------------------------------TCTCTTC------------------------------------------------------GGTTC---------TCCATTTGTAAATTTTTTGTT-----------------------------------------------------------------------------------------AAAAATA-----------------TCTCTTGATT---TT-CTTCTTTATTTT-----------T----G-------------GATTAC-TTTCCCCGGATT-----ACATGGTTATCCT-CACAC---ACCAC---------------------------------------------------------C-ACCAC--------------------------CA----------C-------------------------------------------AACCACCAACAAC----AACACA---CT-TGTAC-CATACTTGCCCAC--CC-ACAGTATCTCGTTAGGCAGTAGTTTTGTAAATAGTTC-----------------------
droKik1 scf7180000302232:86275-86480 + ATG---------------------------------------------------------------------------------------------G--T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT-------------------------------------------------------------------------------------------------------------------------------------GTTTT------------------------------------------------------GGTTTATATTTAACTTTA-TTGTAAATT---TGTT----------------------------------------------------------------------------------------------T------------------TCTCTTGATT---TT-CTTTTTTATTTT-----------C----G-------------GTTTACTTTTGACGGGACTCT---TTGTGGTTATCCT-CGCAC-ACACCAAT------------------------------------------------------------------------------------CACTCCA--CAA----AC------AC------------A------------------------------------------------CTCTGTACCCATG----C-CAC--AC-ACAGTATCTCGTTAGGCAATAGTTTTGTAAATAGTTCAAAGACATC------AGCAACAA
droFic1 scf7180000453858:434414-434896 - TCGGACAGCGGCAGCAACAGCA---GCGGGAGT------GGAGGCGGAAGCGTCAAGAGCAAGGCGGCCAACCTCAAGTAAGTGCCATCT--T-TCA-G--CC-----------A-CGAGCG-----AATG-----------------AT-TGGGTTCTGGTT----AGTGGGTATTCACTCTACAGTTTTAATGGAATATGGCTTTGAAAAGTGATTTTGTGTTTCTTTATTTATGGAACTTTATAAGTTATACTTGTTTAAAAGCAACAGTTTCGTATTGCATATAATGAAACATATTCCATTAAAGTTGTAGAGA-CCCTTCATCTATCAATGC-CCACCTTTTTGTTTGGTGGA------------------------------------------------------------------------------------------------------------------------------------------GTTTT------------------------------------------------------GGTTT---------TTCATTTGTAAATTATTCGTT-----------------------------------------------------------------------------------------AAAAAT------------------TCTCTTGATT---TT-CTTCTTTATTTT-----------C----G-------------GTTTAC-TTTGACGGAACT-----TTGTGGTTATCCT-CGCAC---ACCAAA-----------------------------------------------------------------------------------------------CACACACACAC--AC------------G------------------------------------------------AACTGTATTCATACCCAC-CAC--CC-ACAGTATCTCGTTAGGCAATAGTTTTGTAAATAGTTCAA---------------------
droEle1 scf7180000491277:489841-490059 + TTT---------------------------------------------------------------------------------------------T--T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATT----TAATTTTTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCA-TCG-----------------------AAAAACTCTTC---------------GAACACTTGTACATCTCTCTATCTCTCTCTTTC-TTTCTTTGTGTTTTTTT-TGTGTACCC------------AC---------TGC---CTCTCTTTCTGCCTA-----------TCGATG-------------TGTGTC-CAT--------------------------------------------CTCTG-------------------------------------------------TCTCT---------------------------ACT--CTA----AT-GCTATTCTTTTGA-CACTCATGC------------------------------------------------------------------------ATTATCTGTTATA-TGAAAT-TTGTTAT-----ACTCGATCACAAC------TTTAACTA
droRho1 scf7180000779876:9047-9291 - ATA---------------------------------------------------------------------------------------------T--A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTA----TACCCCTTAATGTTTACTT------------------TCTATATATCAATACTTATATACCTATACTTATATAAATACATACATATATGTGTGTGA---------------GTAGATATGC--------------AAC--------------------------------------------------------------------------------------------GAAAAATTGCATTTTATT---TGAATAA-----------------------------------------------TTTTT---------------------G-GT-------GTTTGC-------------------------------------------------------------------------------------------------TTGTTTT-----------------------------------------G------TTCTCCACGAAACGTTTATTTACAGGGACC---------------------------------------ACTAATTCCTGCGGCATTTACAAATGGATACCATTAAAAGGTG----------------------------------------------------GCGCCGA--------CAACCGCAAT------GACAACAA
droBia1 scf7180000301754:5137803-5137977 - TAT---------------------------------------------------------------------------------------------T--T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------AGTTT---------TTC-TTTGTAAATTATTCGTT-----------------------------------------------------------------------------------------AAA-TT------------------TATCTTGATT---TT-C-TCTTTATTTT-----------C----G-------------GATTAC-TTTGACGGGACC-----TTGTGGTTATCCT-CGCAC---ACCAAA-----------------------------------------------------------------------------------------------CACACGCCCAC--CC------------A------------------------------------------------CTCTGTACTCATAC----CCAC--CC-ACAGCATCTCGTTAGGCAATAGTTTTGTAAATAGTT------------------------
droTak1 scf7180000415243:157944-158142 - ATG---------------------------------------------------------------------------------------------G--T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT-------------------------------------------------------------------------------------------------------------------------------------TTTTT------------------------------------------------------GGTTC---------TTCATTTGTAAATTATTCGTT-----------------------------------------------------------------------------------------AAAATTT-----------------TCTCTTGATT---TT-CTTCTTTATTTT-----------C----G-------------GATTAC-TTTGACGGGACT-----TTGTGGTTATCCT-CGCAC---ACCAAA-----------------------------------------------------------------------------------------------CACACACACAC--ACCGCCCACCCCACC------------------------------------------------CACTGTATTCATAC----CTAC--CC-ACAGTATCTCGTTAGGCAATAGTTTTGTAAATAGTTCAA---------------------
droEug1 scf7180000409230:369486-369701 + TTT---------------------------------------------------------------------------------------------C--C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA----T------------------------------------------------------------------------------------------------------------------------TT-------------------------------------------------------------------TC---------TTCACTTTTAAGTTTAATTTTAAGTCTATTAAAAAATTCCCCT--------------AAATCTTTGTA----------------------------------------------------------------------------------------CATTTT-----------GGTTCT-------------TAGT-------------------------------------------------AAGGGTATAGCCTGTACCTTATAGATTTTAAGTCTTTTCCTTTTTTTGTGGTTTTC-ACTTTTA------------------------------------C-ATT--CCTCTTAACGATCCGCGC------------------------------------------------------------------------AGTGCGGCTTGTT-GGCAAT-GTCACGTAAGTTGCT-----GCAAC------AACAGCAA
dm3 chr2R:17998409-17998598 - TGT---------------------------------------------------------------------------------------------T--T----------------------------------GGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGTT-------------------------------------------------------------------------------------------------------------------------------------ACATTTT------------------------------------------------------GGTTT---------TTCATTTGTAAATTATTTGTT-----------------------------------------------------------------------------------------AAAATT------------------TATCTTAATT---TT-CTTCTTTATTTT-----------C----G-------------GATTAC-TTTGACGGGACT-----TTGTGGTTATCCT-CGCAC---ACCAAA-----------------------------------------------------------------------------------------------CACACACACAC------------------------------------------------------------------ACTGTATCTAAAT----CCAC--CC-ACAGTATCTCGTTAGGCAATAGTTTTGTAAATAGTTCAA---------------------
droSim2 2r:18535918-18536104 - dsi_21144 TGT---------------------------------------------------------------------------------------------T--T----------------------------------GGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGTT-------------------------------------------------------------------------------------------------------------------------------------ACATTTT------------------------------------------------------GGTTT---------TTCATTTGTAAATTATTCGTT-----------------------------------------------------------------------------------------AAAATG------------------TATCTTAATT---TT-CTTCTTTATTTT-----------C----G-------------GATTAC-TTTGACGGGACT-----T-TTGGTTATCCT-CGCAC---ACCAAA-----------------------------------------------------------------------------------------------CACACACAC--------------------------------------------------------------------ACTGTATCTAAAT----CCAC--CC-ACAGCATCTCGTTAGGCAATAGTTTTGTAAATAGTTCAA---------------------
droSec2 scaffold_0:9119104-9119330 - ATA---------------------------------------------------------------------------------------------T--A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTA----TACCTCTTAATGTTTACTT------------------TCTATATATCAATACCCATATACCTATACTTATATAAATACATACTTATATGTGTGTGC---------------GTAGATTTGC--------------ATC--------------------------------------------------------------------------------------------TAGAAATTGCATTTTATT---TAAATAA-----------------------------------------------TTTTT---------------------G-GT-------GTTTGC-------------------------------------------------------------------------------------------------TTGTTTT-----------------------------------------G------TTCTCCACGAAACGTTTATTTACAGGGACC---------------------------------------ACTAATTCCTGCGGCATTTACAAATGGATACCATTAAAAGGTG------------------------------------------------------------------------------------GCGCCGA
droYak3 3L:4193362-4193652 + CTAAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCAGAAAATACAGATTATTTTCTTTTATATATTATAATATTTTTT-----------------------------------AACATTTTTGTTGCCCTATACATGGCCATAACATTCGTAAACCCAT--------------TAA--------------------------------------------------------------------------------------------GCTGTTTTGTATTTTTTTCGTAATATAC-----------------------------------------------TTTTC---------------------A-AT-------GCTAACACATTTTCTCGCTGTGTTTTTCCTCATTGGCAGTCCCCGGAACTGGACTAT-CGGCACGAGCTG-----A-TGGGTCGTCTG-CATAAA--ATCGAG-----------------------------------------------------------------------------------------------CCCGCCGAT--------------------------------------------------------------------GTTGAGCTTGAGG----TT-C--TG-GCAGCGGCCGCTGCAG--------CCGCG--------------AAT------AACAACAA
droEre2 scaffold_4784:16783336-16783590 + ATA---------------------------------------------------------------------------------------------T--A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATGTATACCTCTTAATGTTTACTT------------------TCTATATATCAATACCCATATACCTATACTTATATAAATACATACTTATATGTGTGTGC---------------GTAGCTATGC--------------AAC--------------------------------------------------------------------------------------------TAGAAATTGCATTTTACT---TAAATAA-----------------------------------------------TTTTT---------------------G-GT-------GTTTGC-------------------------------------------------------------------------------------------------TCGTTTT-----------------------------------------G------TTCTCCACGAAACGTTTATTTACAGGGACC---------------------------------------ACTAATTCCTGCGGCATTTACAAATGGATACCATTAAAAGGTG----------------------------------------------------GCGCCGACA--------ACCGCAATGACAACAGCAACAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TCGGAGAGCGGCAGC------A---------------------GCGGGAGCGTGAAAAGCAAAGCGGCTAATCTTAGGTAAGTCTC-TCTCTC-TCTGT--CTCTCCCTCTCTAAAATGGGGCA------G-----------------CT-TCCGAT-------CGGGATCG------------------------------------------TCCC---------------------------------------------------------------------------------------------------AC----CAA-----------GATAT-------------------GTGTAACTATTTCTTATGGTTTTTTTTTTTAATTTATAACTTTTTGT-----------------------------------AACATATTTATAT--------ATGTTTG---------TAATTTTGT--------------ATT--------------------------------------------------------------------------------------------TTGTATTTTGAATTTTTG---TACATGT-----------------------------------------------TTTTTGTATATTTT--------------------------TGCATATTTTTTTGTTTT-----------T----G-------------G-TTTC-TTTGCCGGGCAT-----T-TTGGTTAAACC-C-------------CAATTCC-----------------------------------------A------C---------------------------------CAAT--CGAACCGACA-------------------------------------------------------------------------------------CAT--CC-ACAGTATCTCGTTAGGCAATAGTTTTGTAAATAGTTCAATTACAAA------AACAACAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----------------------------------------A------C---------------------------------CAAT--CGAACCGACA-------------------------------------------------------------------------------------CAT--CC-ACAG........................................................2611.001000000000000000000000000000000000000000000000001000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------------------------------------------------------------------------------CAT--CC-ACAGTATCTCGTTA..............................................2011.001000000000000000000000010000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------------------CAAT--CGAACCGACA-------------------------------------------------------------------------------------CAT--CC-ACAG........................................................2411.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTAGGCAATAGTTTTGTAA..............................2111.001000000000000000000000000000000000000000100000000000000000000000
..........GCAGC------A---------------------GCGGGAGCGTGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGCAATAGTTTTGT................................1811.001000000000001000000000000000000000000000000000000000000000000000
droMoj3
TCGGAGAGCGGCAGCAACAGCA---------------------GCGGCAGCGTGAAGAGCAAAGCGGCTAATCTTAGGTGAGTCCCATCTCAA-TCTGG--CC-----------AACTGGCGGAATGCCTG-----------------CT-TGGGTGC-------GGGC-----------------------------------------------TG------------------------------------------------------------------------------------------------------------------------AAAC-------------------------GGA----------------------------------------------------------------------------------------------ATGTTTG---------TAATTATGTTTGATATATTTCAATTTTTGAATTTTG-CATTTTTTGTATTTCTCTAATTTTATTCCTT----------------------------------------------------------------------------------TTTTA------------------------------TG-AATTTTTTT-GAAAATTTA------------AA---------A---------TTTTTTGTTTT-----------T----T-------------GGTTTC-TTTGCCGGGACTTT---AATTGGTTAACAA-CTC------------------------------------------------------------------------------------CTGGTCCAAA-TACACCA--CACACACACACAC--AC------------A-----------------------CACA---------------------CA-CG----CATACACACCTGT--AC-ACAGTATCTCGTTAGGCAATAGTTTTGTAAATAGTTCAATTACAAA------AACAACAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
TCGGAGAGCGGCAGCAACAGCA---------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.....................A---------------------GCGGCAGCGTGAAGAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100
...........................................................CAAAGCGGCTAATCTTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
..................................................CGTGAAGAGCAAAGCGGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
.............................................GGCAGCGTGAAGAGCAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
.............................................GGCAGCGTGAAGAGCAAAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAC--AC------------A-----------------------CACA---------------------CA-CG----CATAC.........................................................................22200.051100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCA--CACACACACACAC--AC------------........................................................................................................................................21200.051100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--AC------------A-----------------------CACA---------------------CA-CG----CATACA........................................................................18200.051000001
droGri2
TCGGAGAGCAGCAGC------A---------------------GCGGGAGCGTGAAAGCCAAGGCGGCAAATCTTAGGTGAGTTTT----------------------------------------G--GTGTTCGAA----------T-TGGGTTTTTTTTTTTGGGATCT------------------------------------------GATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCT-----------------------------------GA-----------------------------------------------------------TCTGGTTTCTTGACATTATTTG-ATTTTTCACATTTAATTTCTTTTTGTATAATTT---------TGT-TTT------------------------------------------------------------------------------------------------------GTAAATTGT------------T-GC-------A--------TTTGTTTGTTTTC----------T----T-------------GGTTTC-TTTGCCGGGCATATACACTTTGGTTCAAAT-CCCAA---TCCAAC-----------------------------------------------------------------------------------------CAAT--AT-ATCCAC-------------------------------------------------------------------------------A------CAT--CCAACAGTATCTCGTTAGGCAATAGTTTTGTAAATAGTTCAATTACAAA--------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......AGCAGCAGC------A---------------------GCGGGAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18100.10101
.......GCAGCAGC------A---------------------GCGGGAGCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101
droWil2
TCGGATAGCGGGAGCAACAGCA---------------------GTGGCAGTGTCAAGAGCAAGGCAGCCAATTTGAAGTAAGTTTT-TTTTGCATATATGTAT-----------AT---ATGGCATG-TTGTTTGGGTTGATTAGATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT------------------TATACAAA-TAATATACATATACATATACATCTATTGTTACGTAAAAATTTTGATATAC--------------------------------------------------------------------------------------------------------------------------------------AAGAAATTTTATTT--------------CGGTTTTTGTA-------------------------------CATTTTTGT-TAAAATTTG-----------------------ATT---ATATCTTTTTATTT---------------------------------TTTC-TTTATCGGGAAT-----TTGT-GTTATCCTACACAC---AC-AC---------------------------------------------------------T-ACTACTA------------------------------------C-AAC--TCTGTTCACATTACCCACAATATCCTT------------------------------------------ACCTGAA-----CCACCACA-ACAGTATCTCGTTAGGCAATAATTTTGTAAATAATTCGATTGCAAAATCGAAATCAACATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTT------------------------------------------ACCTGAA-----CCACCACA-ACAG........................................................2212.00220000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGAA-----CCACCACA-ACAG........................................................1811.00110000
...............AACAGCA---------------------GTGGCAGTGTCAAGAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCCTT------------------------------------------ACCTGAA-----CCACCACA-ACAG........................................................2811.00101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAATTCGATTGCAAAAT............2011.00100100
dp5
TCGGAGAGCGGCAGCAACAGCA---------------------GTGGCAGCGTCAAGAGAAAGGCGGGCAATCTGAAGTAAGTTTA-------------------------------------------TGCTTGGATCCACCAGCAGT-CCG--------------GCACC------------------------------------------TCC------------------------------------------------------------------------------------------------------------------------GACAT---------------------------------------------------------------------------------------------------------------------------------------------------TTGATACTCTT-----------------------------------------------------------------------------------------------------------------------------------------------TTTTATTTTTTTTTTT-ATTTTTGAAACTTTTGT-TAAAATTCC------------AC---------ATT---TTCTTTCTTTATTTT-----------CGGGTG-------------GATTTC-TTTGCCGGGCAT-----TCGTGGTTATCTT-C-------------CTATCCC-----------------------------------------A------CCCGCC--CAACCACCCACTCACCCAAACCACACCA--C-----------------------------------ACCACACACCCATCACAAATACAAACTAC----AAACGACGC-----TATCCAT----GG-TAT--CC-ACAGTATCTCGTTAGGGAATAGTTTTGTAAATAGTTCGATGGCAAA------AACCACTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................CGTCAAGAGAAAGGCGGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...................................................GTCAAGAGAAAGGCGGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
.....................A---------------------GTGGCAGCGTCAAGAGAAAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000001
..............................................GCAGCGTCAAGAGAAAGGCGGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100000
droPer2
TCGGAGAGCGGCAGCAACAGCA---------------------GTGGCAGCGTCAAGAGAAAGGCGGGCAATCTGAAGTAAGTTTA-------------------------------------------TGCTTGGATCCACCAGCAGT-CCG--------------GCACC------------------------------------------TCC------------------------------------------------------------------------------------------------------------------------GACAT---------------------------------------------------------------------------------------------------------------------------------------------------TTGATACTCTT-----------------------------------------------------------------------------------------------------------------------------------------------TTTTATTTTTT-TTTT-ATTTTTGAAACTTTTGT-TAAAATTCC------------AC---------ATT---TTCTTTCTTTATTTT-----------CGGGTG-------------GATTTC-TTTGCCGGGCAT-----TCGTGGTTATCTT-C-------------CTATCCC-----------------------------------------A------CCCGCC--CAACCACCCACTCACCCAAACCACACCA--C-----------------------------------ACCACACACCCATCACAAATACAAACTAC----AAACGACGC-----TATCCAT----GG-TAT--CC-ACAGTATCTCGTTAGGGAATAGTTTTGTAAATAGTTCGATGGCAAA------AACCACTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................GCA---------------------GTGGCAGCGTCAAGAGAAAGGCGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
..........................................................GAAAGGCGGGCAATCTGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
................ACAGCA---------------------GTGGCAGCGTCAAGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
............AGCAACAGCA---------------------GTGGCAGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.331010000
droAna3
TTT---------------------------------------------------------------------------------------------T--T-----ACTTTTCTAAAGTAAAGGA------G-----------------GT-TCTAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATT-TAAAAATAGCCA------------------TTAAAATATTCAAACCTATAA---------------------------------------------------------------TGACTATATTT-----------------------------------------------------------------------------------------------------------------------------------------------ATTTATTTATTTTTTAAATCATTGATAGTTATTA-TAAAATTTGGATAGAACACCATT--------ATTT---TTCTTATGTAATGTT-----------CAAAAA-------------AATT-C-TAT-TTAAACAT-----ACCTATATATTTA-C-------------ATATTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGTT----------TTTGG---------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TCGGACAGCGGGAGCAACAACAGCAGCGCCAGTGGCCATGGAGGCGGCAGCGTCAAGAGCAAAGCGGCCAATCTGAAGTGAGTATG----------------------------------------G--TGGCTGGAGCTATCACTAGC-TGGGGTTCTGACCTCGGGGTGG------------------------------------------GCCT------------------------------------------------------------------------------------------------------------------------ACACC---TGGTTCGGTTGGG-T-------------------------------------------------------------------------------------------------------------------------------------TCTCTTC------------------------------------------------------GGTTC---------TCCATTTGTAAATTTTTTGTT-----------------------------------------------------------------------------------------AAAAATA-----------------TCTCTTGATT---TT-CTTCTTTATTTT-----------T----G-------------GATTAC-TTTCCCCGGATT-----ACATGGTTATCCT-CACAC---ACCAC---------------------------------------------------------C-ACCAC--------------------------CA----------C-------------------------------------------AACCACCAACAAC----AACACA---CT-TGTAC-CATACTTGCCCAC--CC-ACAGTATCTCGTTAGGCAGTAGTTTTGTAAATAGTTC-----------------------SizeHit CountTotal NormTotal
No Reads
droKik1
ATG---------------------------------------------------------------------------------------------G--T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT-------------------------------------------------------------------------------------------------------------------------------------GTTTT------------------------------------------------------GGTTTATATTTAACTTTA-TTGTAAATT---TGTT----------------------------------------------------------------------------------------------T------------------TCTCTTGATT---TT-CTTTTTTATTTT-----------C----G-------------GTTTACTTTTGACGGGACTCT---TTGTGGTTATCCT-CGCAC-ACACCAAT------------------------------------------------------------------------------------CACTCCA--CAA----AC------AC------------A------------------------------------------------CTCTGTACCCATG----C-CAC--AC-ACAGTATCTCGTTAGGCAATAGTTTTGTAAATAGTTCAAAGACATC------AGCAACAASizeHit CountTotal NormTotal
No Reads
droFic1
TCGGACAGCGGCAGCAACAGCA---GCGGGAGT------GGAGGCGGAAGCGTCAAGAGCAAGGCGGCCAACCTCAAGTAAGTGCCATCT--T-TCA-G--CC-----------A-CGAGCG-----AATG-----------------AT-TGGGTTCTGGTT----AGTGGGTATTCACTCTACAGTTTTAATGGAATATGGCTTTGAAAAGTGATTTTGTGTTTCTTTATTTATGGAACTTTATAAGTTATACTTGTTTAAAAGCAACAGTTTCGTATTGCATATAATGAAACATATTCCATTAAAGTTGTAGAGA-CCCTTCATCTATCAATGC-CCACCTTTTTGTTTGGTGGA------------------------------------------------------------------------------------------------------------------------------------------GTTTT------------------------------------------------------GGTTT---------TTCATTTGTAAATTATTCGTT-----------------------------------------------------------------------------------------AAAAAT------------------TCTCTTGATT---TT-CTTCTTTATTTT-----------C----G-------------GTTTAC-TTTGACGGAACT-----TTGTGGTTATCCT-CGCAC---ACCAAA-----------------------------------------------------------------------------------------------CACACACACAC--AC------------G------------------------------------------------AACTGTATTCATACCCAC-CAC--CC-ACAGTATCTCGTTAGGCAATAGTTTTGTAAATAGTTCAA---------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TTT---------------------------------------------------------------------------------------------T--T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATT----TAATTTTTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCA-TCG-----------------------AAAAACTCTTC---------------GAACACTTGTACATCTCTCTATCTCTCTCTTTC-TTTCTTTGTGTTTTTTT-TGTGTACCC------------AC---------TGC---CTCTCTTTCTGCCTA-----------TCGATG-------------TGTGTC-CAT--------------------------------------------CTCTG-------------------------------------------------TCTCT---------------------------ACT--CTA----AT-GCTATTCTTTTGA-CACTCATGC------------------------------------------------------------------------ATTATCTGTTATA-TGAAAT-TTGTTAT-----ACTCGATCACAAC------TTTAACTASizeHit CountTotal NormTotal
No Reads
droRho1
ATA---------------------------------------------------------------------------------------------T--A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTA----TACCCCTTAATGTTTACTT------------------TCTATATATCAATACTTATATACCTATACTTATATAAATACATACATATATGTGTGTGA---------------GTAGATATGC--------------AAC--------------------------------------------------------------------------------------------GAAAAATTGCATTTTATT---TGAATAA-----------------------------------------------TTTTT---------------------G-GT-------GTTTGC-------------------------------------------------------------------------------------------------TTGTTTT-----------------------------------------G------TTCTCCACGAAACGTTTATTTACAGGGACC---------------------------------------ACTAATTCCTGCGGCATTTACAAATGGATACCATTAAAAGGTG----------------------------------------------------GCGCCGA--------CAACCGCAAT------GACAACAASizeHit CountTotal NormTotal
No Reads
droBia1
TAT---------------------------------------------------------------------------------------------T--T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------AGTTT---------TTC-TTTGTAAATTATTCGTT-----------------------------------------------------------------------------------------AAA-TT------------------TATCTTGATT---TT-C-TCTTTATTTT-----------C----G-------------GATTAC-TTTGACGGGACC-----TTGTGGTTATCCT-CGCAC---ACCAAA-----------------------------------------------------------------------------------------------CACACGCCCAC--CC------------A------------------------------------------------CTCTGTACTCATAC----CCAC--CC-ACAGCATCTCGTTAGGCAATAGTTTTGTAAATAGTT------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
ATG---------------------------------------------------------------------------------------------G--T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT-------------------------------------------------------------------------------------------------------------------------------------TTTTT------------------------------------------------------GGTTC---------TTCATTTGTAAATTATTCGTT-----------------------------------------------------------------------------------------AAAATTT-----------------TCTCTTGATT---TT-CTTCTTTATTTT-----------C----G-------------GATTAC-TTTGACGGGACT-----TTGTGGTTATCCT-CGCAC---ACCAAA-----------------------------------------------------------------------------------------------CACACACACAC--ACCGCCCACCCCACC------------------------------------------------CACTGTATTCATAC----CTAC--CC-ACAGTATCTCGTTAGGCAATAGTTTTGTAAATAGTTCAA---------------------SizeHit CountTotal NormTotal
No Reads
droEug1
TTT---------------------------------------------------------------------------------------------C--C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA----T------------------------------------------------------------------------------------------------------------------------TT-------------------------------------------------------------------TC---------TTCACTTTTAAGTTTAATTTTAAGTCTATTAAAAAATTCCCCT--------------AAATCTTTGTA----------------------------------------------------------------------------------------CATTTT-----------GGTTCT-------------TAGT-------------------------------------------------AAGGGTATAGCCTGTACCTTATAGATTTTAAGTCTTTTCCTTTTTTTGTGGTTTTC-ACTTTTA------------------------------------C-ATT--CCTCTTAACGATCCGCGC------------------------------------------------------------------------AGTGCGGCTTGTT-GGCAAT-GTCACGTAAGTTGCT-----GCAAC------AACAGCAASizeHit CountTotal NormTotal
No Reads
dm3
TGT---------------------------------------------------------------------------------------------T--T----------------------------------GGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGTT-------------------------------------------------------------------------------------------------------------------------------------ACATTTT------------------------------------------------------GGTTT---------TTCATTTGTAAATTATTTGTT-----------------------------------------------------------------------------------------AAAATT------------------TATCTTAATT---TT-CTTCTTTATTTT-----------C----G-------------GATTAC-TTTGACGGGACT-----TTGTGGTTATCCT-CGCAC---ACCAAA-----------------------------------------------------------------------------------------------CACACACACAC------------------------------------------------------------------ACTGTATCTAAAT----CCAC--CC-ACAGTATCTCGTTAGGCAATAGTTTTGTAAATAGTTCAA---------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCGTTAGGCAATAGTTTTGT................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTATCTCGTTAGGCAATAGTTT...................................2411.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGTTAGGCAATAGTTTTGTAAATAGT.........................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAC-TTTGACGGGACT-----TTGTGG........................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-----------C----G-------------GATTAC-TTTGACG........................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCGTTAGGCAATAGTTTTGTA...............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-TTTGACGGGACT-----TTGTGGTTATCCT-CT..............................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-----------C----G-------------GATTAC-TTTGACGGGA.....................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGGACT-----TTGTGGTTATCC..................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGACGGGACT-----TTGTGGTTATCCT-C...............................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAC------------------------------------------------------------------ACTGTATCTAAAT----CCAC--CC-ACAG........................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATCTCGTTAGGCAATAGTT....................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TGT---------------------------------------------------------------------------------------------T--T----------------------------------GGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGTT-------------------------------------------------------------------------------------------------------------------------------------ACATTTT------------------------------------------------------GGTTT---------TTCATTTGTAAATTATTCGTT-----------------------------------------------------------------------------------------AAAATG------------------TATCTTAATT---TT-CTTCTTTATTTT-----------C----G-------------GATTAC-TTTGACGGGACT-----T-TTGGTTATCCT-CGCAC---ACCAAA-----------------------------------------------------------------------------------------------CACACACAC--------------------------------------------------------------------ACTGTATCTAAAT----CCAC--CC-ACAGCATCTCGTTAGGCAATAGTTTTGTAAATAGTTCAA---------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTATCTAAAT----CCAC--CC-A...........................................................2011.00100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCT-CGCAC---ACCAAA-----------------------------------------------------------------------------------------------CACACACAC--------------------------------------------------------------------ACT...................................................................................2911.00100010000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------------------------------------------------------------------ACTGTATCTAAAT----CCAC--CC-AC..........................................................2211.00101000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGTTAGGCAATAGTTTTGTAAA.............................2511.00100000001000000000
droSec2
ATA---------------------------------------------------------------------------------------------T--A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTA----TACCTCTTAATGTTTACTT------------------TCTATATATCAATACCCATATACCTATACTTATATAAATACATACTTATATGTGTGTGC---------------GTAGATTTGC--------------ATC--------------------------------------------------------------------------------------------TAGAAATTGCATTTTATT---TAAATAA-----------------------------------------------TTTTT---------------------G-GT-------GTTTGC-------------------------------------------------------------------------------------------------TTGTTTT-----------------------------------------G------TTCTCCACGAAACGTTTATTTACAGGGACC---------------------------------------ACTAATTCCTGCGGCATTTACAAATGGATACCATTAAAAGGTG------------------------------------------------------------------------------------GCGCCGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CTAAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCAGAAAATACAGATTATTTTCTTTTATATATTATAATATTTTTT-----------------------------------AACATTTTTGTTGCCCTATACATGGCCATAACATTCGTAAACCCAT--------------TAA--------------------------------------------------------------------------------------------GCTGTTTTGTATTTTTTTCGTAATATAC-----------------------------------------------TTTTC---------------------A-AT-------GCTAACACATTTTCTCGCTGTGTTTTTCCTCATTGGCAGTCCCCGGAACTGGACTAT-CGGCACGAGCTG-----A-TGGGTCGTCTG-CATAAA--ATCGAG-----------------------------------------------------------------------------------------------CCCGCCGAT--------------------------------------------------------------------GTTGAGCTTGAGG----TT-C--TG-GCAGCGGCCGCTGCAG--------CCGCG--------------AAT------AACAACAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAT-CGGCACGAGCTG-----A-T...........................................................................................................................................................................................................................................................................................1911.00100100000000
droEre2
ATA---------------------------------------------------------------------------------------------T--A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATGTATACCTCTTAATGTTTACTT------------------TCTATATATCAATACCCATATACCTATACTTATATAAATACATACTTATATGTGTGTGC---------------GTAGCTATGC--------------AAC--------------------------------------------------------------------------------------------TAGAAATTGCATTTTACT---TAAATAA-----------------------------------------------TTTTT---------------------G-GT-------GTTTGC-------------------------------------------------------------------------------------------------TCGTTTT-----------------------------------------G------TTCTCCACGAAACGTTTATTTACAGGGACC---------------------------------------ACTAATTCCTGCGGCATTTACAAATGGATACCATTAAAAGGTG----------------------------------------------------GCGCCGACA--------ACCGCAATGACAACAGCAACAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTCCTGCGGCATTTA..................................................................................................................1811.0010001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTCCTGCGGCATTTACAAATGG...........................................................................................................2511.0011000000

Generated: 05/16/2015 at 08:48 PM