dvi_6125

ACCATTATGTCCGCGGTACCTTTGCAGCTGTCCTGAGTGCCGCTCAGTTCCACTCACTTAACAAGATTGATCGTAACTCTTCGACTTGTTTCGACTTTAGACCAAATCAAACACGAAAACAAGTATCATAATTAAATTTAAAACTGAAAGCTAAAGAGTTATTGGCGCAAAGTATCAGAAATTAGCGTACAAAGCAAATGAATGATAATAATGATAAAATAAATACACGTCGAAGACATTAACATCGAAAT ************************************************.((((.((((((....((((((.(((....((((......))))..))))))))).((((.(((((.........))))).))))..............))))))))))......(((...(((.((........)))))...))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	SRR060669 160x9_females_carcasses_total	V116 male body	SRR060659 Argentina_testes_total
........................................................................................................................................................................AAAGTATCAGAAATTAGCGT...............................................................	20	0	1	1.00	1	1	0	0	0
......................................................................................TGTTTCGACTTTAGACCAAAT................................................................................................................................................	21	0	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................GGAAAAAGCAAGTGAATGATAA...........................................	22	3	6	0.17	1	0	0	1	0
.................................................................................................................................................................................GTAATTAGGGTACAAAGAAAA.....................................................	21	3	12	0.08	1	1	0	0	0
...............................................................................................................................................................TAGTTGCGGAAAGTATCAG.........................................................................	19	3	20	0.05	1	0	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_12875:11410066-11410316 +	dvi_6125	TGGTAATACAGGCGCCATGGAAACGTCGACAGGACTCACGGCGAGTCAAGGTGAGTGAATTG------------TTCTAACTAGCATTGAGAAGCTGA---------------------------------------------------------------AC------AAAGCTGAAATCTGGTTTAGTTTGTGCTT--------------------------------------------TTGTTCATAGTATTAATTTAAATTTTGACTTTCGATTTCTCAATAACCGCGTTTCATAGTC---TTTAATCGCATGTTTCGT------------------------TTA----CTTACTATTATTACTATTTTATTTATGTGCAGCTTC--TGTAA--------TTGTAGCTTTA
droMoj3	scaffold_6496:15515638-15515943 -		TGGTAATGCAGGCGCCATGGAAACGTCGACAGGACTCGCGGCGTGTCAAGGTAAGTCGAGTGTGAATAT--------------GAATGTG-AATATGA------------------------------ATACGAATACGAATACGAATACTTGGACTCTAATCCAGTCCAAAGCTGA-----------------CAGTCGAAAGGTTTATTTGATACAGTGGCAACAAAACCAGCTTAAGTATTTTTTTTAGTA---TGTTTTGTTTCAGCTTTAAGTTTCTCC--------------------------ATCGCATGCTACCTCTACCAATTAGTTTTAAGTATTGCGCATATGTCTGT-----------------ATGTGTGCAGCTTAAATGTAGAAGTC---TTTTAGCTCTA
droGri2	scaffold_15245:13314062-13314302 -		TGGTAATACAGCGGCCCTGGATACGACGACAGGAGTCGCGGCGAGTCAAGGTGAGTGTATTTTGTATTT--------------GTATTTGTTAACTAG---------------------------------------------------------------CCTTTT-----------------TCTAGTTTGTGATTAGAGAA--------------------------------------TTGTTATTATTATTATTTTTTATTT--GTTGTAGGCTTTTTA-AAATCGCGTTTCATAGTTCAATTGAATTGCATGTTTTAC------------------------ATATTTATTTAT-----------------TATTATTTTTTTTTTATATTTTATTTTATATTTAGTTCTA
droWil2	scf2_1100000004513:1639674-1639899 +		TGGTATTGCAGGCGCCATGGAAACGTCGACAGGACTCGAGGCGTGTGAAGGTAAGTTGAAGG--AAG---------------------------TTGAAATTCTATAAATATACATGCATATATTTAACTAGTAAGATGTAT-TGAGTTGCTGCAACCTGTCTCGGTCGAAAGTTGAATTCAAGTTTA-TTTGAGCTA------------------------------------------------------------------CATGCACTTTCGACTTTGC----ACCAAGTTACAAAGTTCGTTGTAATCGCATGTTTCGC------------------------ATA------------------------------------------------------------------
dp5	3:13705696-13705751 +		TGGTCCTGCAGAAGCCATGGCAGCGACGACAGGACTCGCGCCGAGTCAAGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_4:1615399-1615454 -		TGGTCCTGCAGAAGCCATGGCAGCGACGACAGGACTCGCGCCGAGTGAAGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13266:1448544-1448600 -		TGGTCCTGCAACAGCCATGGAAGCGTCGACAGGACTCTCGCCGTGTGAAGGTAAGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396730:2443765-2443862 -		TGGTCCTGCAACAGCCATGGAAGCGTCGACAGGATTCGCGGCGAGTGAAGGTAAGCAGTCTC------------CTCTAAGCGGTACTAACTAACTAG---------------------------------------------------------------GCAG-------------------TTTAGTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000299654:15379-15434 -		TGGTGTTCCAAAAGCCCTGGAAACGCCGGCAGGACTCGCGCCGGGTGAAGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000453851:1753600-1753656 -		TGGTTCTGCAACAGCCCTGGAAACGCCGACAGGACTCGCGCCGTGTGAAGGTAGGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491240:1426305-1426400 +		TGGTTATGCAGAAGCCCTGGAAACGCCGGCAGGACTCTCGTCGAGTAAAGGTAAGCGTGCTG--A-CAGGATGCCAACAAACTTTAATAG----CTGA---------------------------------------------------------------AA------AAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000779971:103605-103659 +		TGGTGCTGCAGAAACCCTGGAAACGCCGGCAGGACTCTCGTCGAGTTAAGGTGAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302291:2484480-2484535 +		TGGTACTGCAGAAACCCTGGAAACGCCGACAGGACTCGCGCCGGGTGAAGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000415379:684132-684188 +		TGGTGCTGCAGAAACCCTGGAAACGCCGGCAGGACTCGCGTCGCGTGAAGGTGAGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409183:221262-221318 +		TGGTGCTGCAAAAACCCTGGAAACGCCGGCAGGACTCGCGTCGCGTTAAGGTAAGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3	chr2R:4564063-4564124 +		TGGTGCTGCAGAAGCCCTGGAAACGCCGTCAGGACTCGCGTCGCGTGAAGGTGAGTGCTTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	2r:5375526-5375587 +		TGGTGCTCCAGAAGCCCTGGAAACGCCGTCAGGACTCGCGTCGCGTGAAGGTAAGTGCTTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_1:2208569-2208625 +		TGGTGCTCCAGAAGCCCTGGAAACGCCGTCAGGACTCGCGTCGCGTGAAGGTAAGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	2L:17224457-17224518 +		TGGTGCTGCAAAAGCCCTGGAAACGCCGCCAGGACTCGCGCCGAGTGAAGGTAAGTGCGTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4929:18076972-18077028 -		TGGTGCTGCAACAGCCCTGGAAACGCCGCCAGGACTCGCGTCGAGTTAAGGTAAGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

TGGTAATACAGGCGCCATGGAAACGTCGACAGGACTCACGGCGAGTCAAGGTGAGTGAATTG------------TTCTAACTAGCATTGAGAAGCTGA---------------------------------------------------------------AC------AAAGCTGAAATCTGGTTTAGTTTGTGCTT--------------------------------------------TTGTTCATAGTATTAATTTAAATTTTGACTTTCGATTTCTCAATAACCGCGTTTCATAGTC---TTTAATCGCATGTTTCGT------------------------TTA----CTTACTATTATTACTATTTTATTTATGTGCAGCTTC--TGTAA--------TTGTAGCTTTA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.......ACAGGCGCCATGGAAACGTC......................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....AATACAGGCGCCATGGAAA..........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CGACAGGACTCACGGCGA.....................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............CGCCATGGAAACGTCGACAGGACT.............................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
........................GTCGACAGGACTCACGGCGAGTCAAGG..............................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................CGACAGGACTCACGGCGAGT...................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GTCGACAGGACTCACGGCGAGT...................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....ATACAGGCGCCATGGAAACGTCGA....................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....ATACAGGCGCCATGGAAACGTC......................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............CGCCATGGAAACGTCGACAGGACTCAC..........................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............GCCATGGAAACGTCGACAG.................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CATGGAAACGTCGACAGGAT..............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AACGTCGACAGGACTCACGGCGAGT...................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droMoj3

TGGTAATGCAGGCGCCATGGAAACGTCGACAGGACTCGCGGCGTGTCAAGGTAAGTCGAGTGTGAATAT--------------GAATGTG-AATATGA------------------------------ATACGAATACGAATACGAATACTTGGACTCTAATCCAGTCCAAAGCTGA-----------------CAGTCGAAAGGTTTATTTGATACAGTGGCAACAAAACCAGCTTAAGTATTTTTTTTAGTA---TGTTTTGTTTCAGCTTTAAGTTTCTCC--------------------------ATCGCATGCTACCTCTACCAATTAGTTTTAAGTATTGCGCATATGTCTGT-----------------ATGTGTGCAGCTTAAATGTAGAAGTC---TTTTAGCTCTA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................GACAGGACTCGCGGCGTGTCAAGGC.............................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0
.....ATGCAGGCGCCATGGAAACGT.......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................AGGTTTATTTGATACAGTGG...................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...................GAAACGTCGACAGGACTCGC..........................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...............CATGGAAACGTCGACAGGACTCGC..........................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.....ATGCAGGCGCCATGGAAAC.........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................AACAAAACCAGCTTAAGTATTTTTT.........................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
........................GTCGACAGGACTCGCGGCGT.....................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0

droGri2

TGGTAATACAGCGGCCCTGGATACGACGACAGGAGTCGCGGCGAGTCAAGGTGAGTGTATTTTGTATTT--------------GTATTTGTTAACTAG---------------------------------------------------------------CCTTTT-----------------TCTAGTTTGTGATTAGAGAA--------------------------------------TTGTTATTATTATTATTTTTTATTT--GTTGTAGGCTTTTTA-AAATCGCGTTTCATAGTTCAATTGAATTGCATGTTTTAC------------------------ATATTTATTTAT-----------------TATTATTTTTTTTTTATATTTTATTTTATATTTAGTTCTA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

TGGTATTGCAGGCGCCATGGAAACGTCGACAGGACTCGAGGCGTGTGAAGGTAAGTTGAAGG--AAG---------------------------TTGAAATTCTATAAATATACATGCATATATTTAACTAGTAAGATGTAT-TGAGTTGCTGCAACCTGTCTCGGTCGAAAGTTGAATTCAAGTTTA-TTTGAGCTA------------------------------------------------------------------CATGCACTTTCGACTTTGC----ACCAAGTTACAAAGTTCGTTGTAATCGCATGTTTCGC------------------------ATA------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................CGACAGGACTCGAGGCGTGT...................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	2	1	0
..........................CGACAGGACTCGAGGCGTGTGAAGGCC............................................................................................................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	0	2	1	0
....ATTGCAGGCGCCATGGAAAC.........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	1	1	0
.GGTATTGCAGGCGCCATGGA............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	2	0
.......................CGTCGACAGGACTCGAGGC.......................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	2	0
................ATGGAAACGTCGACAGGACTCGA..........................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	1	1	0
................................GACTCGAGGCGTGTGAAGGCC............................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	2	0	0
......TGCAGGCGCCATGGAAACGT.......................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	2	0
..GTATTGCAGGCGCCATGGAAACG........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
.................TGGAAACGTCGACAGGACT.............................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
.....................AACGTCGACAGGACTCGA..........................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0
..........................CGACAGGACTCGAGGCGTG....................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
.GGTATTGCAGGCGCCATGGAAACGT.......................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
..GTATTGCAGGCGCCATGGAAACGT.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
....ATTGCAGGCGCCATGGAAACGTC......................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
................................GACTCGAGGCGTGTGAAGGC.............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
............CGCCATGGAAACGTCGACAGGACT.............................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
..........................CGACAGGACTCGAGGCGTGTGAAGGC.............................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
...TATTGCAGGCGCCATGGA............................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
............................................................................................................................................AT-TGAGTTGCTGCAACCTGTCTCGGTCG........................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
........................GTCGACAGGACTCGAGGCGTGTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
..........................CGACAGGACTCGAGGCGTGTGA.................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
..GTATTGCAGGCGCCATGGAAAC.........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
............................ACAGGACTCGAGGCGTGTGAAGGC.............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
..................................................................................................................................................GTTGCTGCAACCTGTCTCGGTC.........................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
...............CATGGAAACGTCGACAGGAC..............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.....TTGCAGGCGCCATGGAAACGT.......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.............GCCATGGAAACGTCGACAGGA...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1
..GTATTGCAGGCGCCATGGA............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
................ATGGAAACGTCGACAGGACTCGAGGC.......................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0
.....................AACGTCGACAGGACTCGAGGC.......................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
.......GCAGGCGCCATGGAAACGT.......................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
...........................GACAGGACTCGAGGCGTGT...................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
..........................CGACAGGACTCGAGGCGTGTGAAG...............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
.....................AACGTCGACAGGACTCGAGGCGT.....................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0

dp5

TGGTCCTGCAGAAGCCATGGCAGCGACGACAGGACTCGCGCCGAGTCAAGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..GTCCTGCAGAAGCCATGGCAGCG........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................GCGACGACAGGACTCGCGCCGAGT...................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................GCGACGACAGGACTCGCGCCGAGTCAAG...............................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................GGCAGCGACGACAGGACTCGCGCCGAGT...................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............CATGGCAGCGACGACAGGACTCGCGC........................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................ACAGGACTCGCGCCGAGT...................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................GACGACAGGACTCGCGCCGAGT...................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............CATGGCAGCGACGACAGGACTCG...........................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................GCAGCGACGACAGGACTCGCGCCGA.....................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............CATGGCAGCGACGACAGGACT.............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

TGGTCCTGCAGAAGCCATGGCAGCGACGACAGGACTCGCGCCGAGTGAAGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................AGCGACGACAGGACTCGCGCC.......................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	3	0	0	0	0	0
.....................AGCGACGACAGGACTCGC..........................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0
...............CATGGCAGCGACGACAGGACTCGCGC........................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...............CATGGCAGCGACGACAGGAC..............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
...............CATGGCAGCGACGACAGGACC.............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.......................CGACGACAGGACTCGCGC........................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..............................AGGACTCGCGCCGAGTGAAGGC.............................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.............................CAGGACTCGCGCCGAGTGAAGGC.............................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...................GCAGCGACGACAGGACTCGCGCCGAGT...................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.........AGAAGCCATGGCAGCGACGACAGGACTCG...........................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
...............CATGGCAGCGACGACAGGACTCGC..........................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.......GCAGAAGCCATGGCAGCGAC......................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
.........AGAAGCCATGGCAGCGACGACAGGACT.............................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
................................GACTCGCGCCGAGTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..................GGCAGCGACGACAGGACTCGCGC........................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
.......................CGACGACAGGACTCGCGCCGAGT...................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
...............CATGGCAGCGACGACAGGACT.............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

droAna3

TGGTCCTGCAACAGCCATGGAAGCGTCGACAGGACTCTCGCCGTGTGAAGGTAAGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..GTCCTGCAACAGCCATGGAAGCGT.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	5.00	5	0	1	1	0	3	0
....CCTGCAACAGCCATGGAAGCGT.......................................................................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	1	0	0	0	2	0
..........................CGACAGGACTCTCGCCGTGTGAAGGC.............................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	1	0	0	0	1	0
..GTCCTGCAACAGCCATGGAAGCGTC......................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0
............AGCCATGGAAGCGTCGACAGGACT.............................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	1	0	0	0	1
................................GACTCTCGCCGTGTGAAGGCC............................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	1	1	0	0	0	0
.GGTCCTGCAACAGCCATGGAAGCGT.......................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..GTCCTGCAACAGCCATGGAAGC.........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
..............................AGGACTCTCGCCGTGTGAAG...............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
..........................CGACAGGACTCTCGCCGTGTGAA................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
................ATGGAAGCGTCGACAGGA...............................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
................ATGGAAGCGTCGACAGGACT.............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.........AACAGCCATGGAAGCGTCGACAGG................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.........AACAGCCATGGAAGCGTCGACAGGA...............................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.......GCAACAGCCATGGAAGCGTC......................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.....CTGCAACAGCCATGGAAGCGTC......................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
...........................GACAGGACTCTCGCCGTGT...................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0
......................GCGTCGACAGGACTCTCGCC.......................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..GTCCTGCAACAGCCATGGAAGCGTCGA....................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
...........................GACAGGACTCTCGCCGTGTGAA................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
........CAACAGCCATGGAAGCGTCGA....................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..........................CGACAGGACTCTCGCCGTGT...................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
........................GTCGACAGGACTCTCGCCGTGTGAA................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
......TGCAACAGCCATGGAAGCGT.......................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.......................CGTCGACAGGACTCTCGCCGTGT...................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
...............................GGACTCTCGCCGTGTGAAG...............................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..........................CGACAGGACTCTCGCCGTGTG..................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.............................CAGGACTCTCGCCGTGTGAA................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.....................AGCGTCGACAGGACTCTCGCCGT.....................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
....CCTGCAACAGCCATGGAAGC.........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.......................CGTCGACAGGACTCTCGCCGTGTGAAGGC.............................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	1
............AGCCATGGAAGCGTCGACAGGA...............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...........................GACAGGACTCTCGCCGTGTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.......................CGTCGACAGGACTCTCGCCGTGTGAAGGCC............................................................................................................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	1	0
...........................GACAGGACTCTCGCCGTGTGAAGGC.............................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..........................CGACAGGACTCTCGCCGTGTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
............................ACAGGACTCTCGCCGTGTGAAGGC.............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0

droBip1

TGGTCCTGCAACAGCCATGGAAGCGTCGACAGGATTCGCGGCGAGTGAAGGTAAGCAGTCTC------------CTCTAAGCGGTACTAACTAACTAG---------------------------------------------------------------GCAG-------------------TTTAGTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGGTGTTCCAAAAGCCCTGGAAACGCCGGCAGGACTCGCGCCGGGTGAAGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGGTTCTGCAACAGCCCTGGAAACGCCGACAGGACTCGCGCCGTGTGAAGGTAGGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGGTTATGCAGAAGCCCTGGAAACGCCGGCAGGACTCTCGTCGAGTAAAGGTAAGCGTGCTG--A-CAGGATGCCAACAAACTTTAATAG----CTGA---------------------------------------------------------------AA------AAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGGTGCTGCAGAAACCCTGGAAACGCCGGCAGGACTCTCGTCGAGTTAAGGTGAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TGGTACTGCAGAAACCCTGGAAACGCCGACAGGACTCGCGCCGGGTGAAGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TGGTGCTGCAGAAACCCTGGAAACGCCGGCAGGACTCGCGTCGCGTGAAGGTGAGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TGGTGCTGCAAAAACCCTGGAAACGCCGGCAGGACTCGCGTCGCGTTAAGGTAAGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

TGGTGCTGCAGAAGCCCTGGAAACGCCGTCAGGACTCGCGTCGCGTGAAGGTGAGTGCTTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............GCCCTGGAAACGCCGTCAGG................................................................................................................................................................................................................................................................................................................................................................................................	20	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........AGAAGCCCTGGAAACGCCGTC...................................................................................................................................................................................................................................................................................................................................................................................................	21	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................GAAACGCCGTCAGGACTCGCGT........................................................................................................................................................................................................................................................................................................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.......................CGCCGTCAGGACTCGCGTCGCGTGAA................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CGTCAGGACTCGCGTCGCGTGAAG...............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................ACGCCGTCAGGACTCGCGTCGCGTG..................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................GGAAACGCCGTCAGGACTCGCGTCGCG....................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............CCCTGGAAACGCCGTCAGGA...............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................ACTCGCGTCGCGTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CAGGACTCGCGTCGCGTGA.................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TGGTGCTCCAGAAGCCCTGGAAACGCCGTCAGGACTCGCGTCGCGTGAAGGTAAGTGCTTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................CAGGACTCGCGTCGCGTGAAGGC.............................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................GGAAACGCCGTCAGGACTC............................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............AGCCCTGGAAACGCCGTCAGGACT.............................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............AGCCCTGGAAACGCCGTCAGGACTCGC..........................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GCCCTGGAAACGCCGTCAGGACT.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................GTCAGGACTCGCGTCGCGTG..................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................AACGCCGTCAGGACTCGCGG........................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CGTCAGGACTCGCGTCGCGTG..................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
................CTGGAAACGCCGTCAGGACTCGCG.........................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CTGGAAACGCCGTCAGGACTC............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................GGAAACGCCGTCAGGACT.............................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CTGGAAACGCCGTCAGGA...............................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GAAGCCCTGGAAACGCCGTCAGGA...............................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

TGGTGCTCCAGAAGCCCTGGAAACGCCGTCAGGACTCGCGTCGCGTGAAGGTAAGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........................GTCAGGACTCGCGTCGCGTGAA................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	1	1
...........AAGCCCTGGAAACGCCGTCAG.................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0
..........................CGTCAGGACTCGCGTCGCGTG..................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
....................AAACGCCGTCAGGACTCGC..........................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
........CAGAAGCCCTGGAAACGCC......................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
......................ACGCCGTCAGGACTCGCGTCGCGT...................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
.............................CAGGACTCGCGTCGCGTGAAGGC.............................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
.............GCCCTGGAAACGCCGTCA..................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1
....GCTCCAGAAGCCCTGGAAACGCCGTC...................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0

droYak3

TGGTGCTGCAAAAGCCCTGGAAACGCCGCCAGGACTCGCGCCGAGTGAAGGTAAGTGCGTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.....CTGCAAAAGCCCTGGAAACGCCGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	2	0	0	0	0	1	0	0	0	0
.........AAAAGCCCTGGAAACGCCGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
.....CTGCAAAAGCCCTGGAAACGCCGCC...................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..................GGAAACGCCGCCAGGACT.............................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..............................AGGACTCGCGCCGAGTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............AGCCCTGGAAACGCCGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
......TGCAAAAGCCCTGGAAACGCCGC....................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................GCCAGGACTCGCGCCGAGTGAA................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................CTGGAAACGCCGCCAGGACTCGCGCCG......................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................CTGGAAACGCCGCCAGGACT.............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......TGCAAAAGCCCTGGAAACGCCGCCAGGA...............................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......TGCAAAAGCCCTGGAAACGC.......................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................AAACGCCGCCAGGACTCGCGCC.......................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....CTGCAAAAGCCCTGGAAACGC.......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........CAAAAGCCCTGGAAACGCCGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............AGCCCTGGAAACGCCGCCA..................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................CAGGACTCGCGCCGAGTGAAGG..............................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..GTGCTGCAAAAGCCCTGGAAACGCCGCC...................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..GTGCTGCAAAAGCCCTGGAAACGC.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....CTGCAAAAGCCCTGGAAACGCCGCCA..................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

TGGTGCTGCAACAGCCCTGGAAACGCCGCCAGGACTCGCGTCGAGTTAAGGTAAGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................GAAACGCCGCCAGGACTCGC..........................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	2	0	0	0
.....................AACGCCGCCAGGACTCGCGTCGAGTTAAG...............................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0
.........AACAGCCCTGGAAACGCCGC....................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
.....CTGCAACAGCCCTGGAAACGCCGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1	0
..................GGAAACGCCGCCAGGACTCGCGTC.......................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
..GTGCTGCAACAGCCCTGGAAACGCCGC....................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0

dvi_6125

scaffold_12875:11410116-11410266 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads