dvi_607

exon [dvir_GLEANR_16467:5]; CDS [Dvir\GJ16047-cds]; CDS [Dvir\GJ16047-cds]; exon [dvir_GLEANR_16467:4]; intron [Dvir\GJ16047-in]

Species	Coordinate	ID	Alignment
droVir3	scaffold_10322:350751-351106 -	dvi_607	ACTTCAGT---GTTTACTGAACGACTGATGGATCAGAATAATGAACACAAGCGGTAAGTAGAAAT-----CTAAA-------TAAT----------TTGAA---------------CGGGAC------------------------------AT-AACATTTACA-----TTA----------AATTGCAGTCACTCCAAACCATCTATGGGCCGCAGTCTTGGAACGGAGCCACCTACGCTGCATAACAGACACGCTGTTGGTCGGCCTAAGAAGATGACTAGGAAAAGGGAGAAGTTATATTGTATATGCCGTAAGCCCTATGATGACACTAAGTAAG-TCCACATT-TAAACCAC-------------TTC-------CGGA-------------------CTTGACTTA--------AGCATAC---C-T-T--CTTCTTGTAGGTTTTATGTTGGCTGCGACTTGTGCAGCAATTGGTTCCATGGTGACTGTG
droMoj3	scaffold_6680:2385568-2385950 -		ACGTCAGT---GTTCGCTGAACGTCTGATGGATCAGAATACGGAGCACAAACGGTTAGTAGTAGTA---TATACA----TA-----TATATGTAG----TA------------------TA----------------------ATTTCTATATT-GACATCAAATATAATTTG----------TATTGCAGTCACTCGAAGCCTTCGATTGCGCGCAGTCTTGGCGCAGAGCCATCAACGTTGCACAGCCGGCACAGTGTGGGCCGACCCAAGAAGATGGCACGCAAGAAGGAGAAGCTATATTGCATATGCCGCAAGCCCTATGATGACACCAAGTAAT-ACACAATG-AATATA--TGCTTTTA-----T--A------CTAT------------------CTATATACTTA-------TCCA---TCATCATTATATAATTGTAGATTCTATGTCGGTTGCGATCTGTGCAGCAATTGGTTCCATGGTGATTGCG
droGri2	scaffold_15110:175733-176117 +		ACGACGACGATCTTTACTGAAACTCTGTCGGATAAAAATGTTGGCCACAAGCGGTGAGTGGATAAA---ATTGCT-----------AAT---TAGCCCGTT--------------------------T----AGATGAT------------------CAATTACT-----TTGTATTAT---CTGCTGCAGACATTCAAAACCTTCAATTACAAAAGGCGCTGGAACCAAACCAACATCGCTGCACAGCCGGAAAAGCGTTGGTCGGCCCAAGAAGATGTCCAGAACAAATGATAAGGTTTATTGCATATGTCGGAAACCATATGATGAAACAAAGTAAA-TAAATACA---CATT--TAA--------------------TGCA-CAACTT--T-TAATCAGCTTTTACTAAG-------TGTG---TTGCATTTTCAACTTCGCAGGTTCTATGTCGGCTGCGATATGTGTAGCAATTGGTTCCATGGCGATTGTA
droWil2	scf2_1100000004511:11401759-11402129 +		TCATCAAC---CTTTGAAGACCGTCTTACAGAGCATAATGTAGAAACTAAGCGGTAAGTTTTAT--------------------------------CCGTA---------------TGGAGAAAAAAA----TATTATTTAAT------------------TAT-------TATTTTATTTATAAATGCAGACAAGGTAAATTAACAACCAGCCGGAATCTCAGTGCAGAAACAAGTGCACCCAATAATAGACACAGTGTTGGTAGGCCAAAGAAACTGAAAAGAAAAAAAGAAAAGCTGTATTGCATTTGTCGCACACGCTATGATGAGACTAAGTAAG-ACTAAATT-G-GATA--AA------ATAAT---------------CAAGAT--CAAATCAATA------TTAA-------CAGT---TTAAAA----TTTTTACTAGGTTTTATGTCGGCTGTGACTTGTGTAGCAATTGGTTTCATGGCGATTGCG
dp5	XR_group8:1300962-1301332 -		GGATCCAT---ATTTTCCGATCGTCGCGATGAGCAAAATATTGAACAGAAGCGGTAAGTAGCGGT-----AGGAC-------TGTTT---AGTCATT----------------------GGCAACAAT----CATTGCTCATT------------------TGC-------TGTTTTCT---CAGG------TGTGTCAAGGTCAGCACCAGTCGAAATCTCCGGGAGGAAGCCCTTGCAGACAACAGCAGACATGGCGTCGGAAGGCCTAAGAAGTTGACAAGGAAAAAGGAAAAGCTATATTGCGTTTGTCGCACACCTTACGATGAAACAAAGTATG-TCCAAATC--ATATCAA-------------AAT-------TG-------------TATCAAAAT-------AATCATTTGTGCGTGC---T-TT--TTTCCACTCAGATTTTATGTGGGCTGTGACCTGTGCAGCAATTGGTTTCATGGCGATTGTG
droPer2	scaffold_32:172049-172420 +		GGATCCAT---ATTTTCCGATCGTCGCGATGAGCAAAATATTGAACAGAAGCGGTAAGTAGCGGT-----AGGAC-------TGTTT---AGTCATT----------------------GGCAACAAT----CATTGCTCATT------------------TGC-------TGTTTTCT---CAGG------TGTGTCAAGGTCAGCACCAGTCGAAATCTCCGGGAGGAAGCCCTTGCAGACAACAGCAGACATGGCGTCGGAAGGCCTAAGAAGTTGACAAGGAAAAAGGAAAAGCTATATTGCGTTTGTCGCACACCTTACGATGAAACAAAGTATG-TCCAAATC-CATATCAA-------------AAT-------TG-------------TATCAAAAT-------AATCATTTGTGCGTGC---T-TT--TTTCCACTCAGATTTTATGTGGGCTGTGACCTGTGCAGCAATTGGTTTCATGGCGATTGTG
droAna3	scaffold_13337:2173834-2174157 -		AGCT---------TCTCCGATCGACGTTCCGAGTCAAACTCGGAATTAAAAAGGTGACTATCAGTGGCTTC----TTTATCTT---G------------T---------------------T-----CCA------------T--------TGT-TATAACCATG-----------------------------------------------TTGTATCGCCAGGTCGGAGCCCAATGCCCAAAACAGCAGGATTGGAGTGGGTAGGCCCAAGAAAATGATACGGAAAAAGGAGAAATTGTACTGCGTTTGCCGCACGCCATATGATGACACAAAGTATG-TTTTACTAACAA------------------GTC-------TG---------TTTAAATTCAGAT-------ATTCA----TGTTTCC---G-ATC--TCCCTTTTAGGTTCTATGTGGGCTGCGACTTGTGCAGCAATTGGTTCCACGGCGATTGTG
droBip1	scf7180000395453:15302-15612 +		AGCT---------------------TTTCCGAGTCAAACTCGGAATTGAAGAGGTACCTATTAGTGACTTT----CACATATT---C------------T---------------------T-----GCA------------T--------TGCTATAACCCAAT-----------------------------------------------CCCTATCCCTAGGTCGGAACCGAATGCCCAAAACAGCAGGCATGGAGTAGGCAGGCCCAAGAAAATGATAAGGAAGAAGGAGAAACTATACTGCGTTTGCCGCACGCCATACGATGACACAAAGTATG-TCTACAAA-TAGGG--------------------------TG---------TTCAGATTAAGAT-------ATTCATGT----TTCC---G-ATC--TCGTTTTAAGGTTTTACGTGGGCTGCGACCTGTGCAGCAACTGGTTCCACGGCGAGTGTG
droKik1	scf7180000302510:777874-778200 -		AGCT---------TCTCAGATCGCCGTAGGGAATCAGATGTCGAACTAAAGAGGTATGTATCTAAA---CTTGTA-----------TAT---TTGTT-GT---------------------T-----CCTAATAT----------------------TGATTAT------------------------------------------------TATATATCACAGATCCGAGCCAAATTCTCACAACAACAGGCATGGTGTTGGCCGGCCAAAGAAGTTGACCAAAAGAAGGGAGAAGCTTTACTGCGTCTGCCGTACTCCATATGATGATACAAAGTATG-TATAATGA-TATTTC--AA------ATCAT---------------AAATCA--CAAATCTA-------AATCATAAATT----T---TTATGA-------TTTTTAGGTTTTACGTTGGCTGCGACTTGTGCAGCAATTGGTTCCATGGCGACTGCG
droFic1	scf7180000454105:48028-48335 -		AAAA--------------------AGTGGCGATCCAAATATAGACATTAAGCGGTAAGTTTTATAG---AAGAAT-----------TATATGAAC----T-------------------TG----------------------TTA----TTAT-TAAAGCCAAT-----------------------------------------------TAAAATTCACAGATCCGACTCAAATGCGCAGAACAGCAGACATGGTGTTGGCAGACCAAAGAAGTTGACAAAGAAAAAGGAAAAGTTATATTGCATTTGTCGTACTCCATATGATGATACAAAGTGAG-TTAATAAA-CACTTT--TAT-------------ATAAGACAGCA------------------CTTTT-----------------ACT---G-AT---AAAATTTTAGGTTTTACGTGGGATGCGACCTATGCAGCAATTGGTTTCATGGTGACTGTG
droEle1	scf7180000491249:4808-5030 -		-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACAGAGGCAAATACGCAGAACAGCAGGCATGGTGTCGGCAGGCCTAAGAAATTTACCAGGAAAAAGGAAAAGTTGTATTGCATTTGTCGTACTCCATATGATGACACAAAGTAAG-TTAACAAA---AATT--TGTTTTTT-----T--T------TTAT------------------ATCTGCCTTGA-------TT-TACA---A-C-T--GTTAATTTAGGTTTTACGTTGGGTGTGACCTATGCAGCAATTGGTTTCATGGTGATTGTG
droRho1	scf7180000777885:124874-125108 +		AG------------------------TTGCGATCCTGAGATGGATTTTAAACGGTAATTATATAAG---TGTTTT-----------TTTTTGTAA----TATTCTGTGTTATTGAA---CG----------------------ACTTATTAAAC-TAAACTGAG------------------------------------------------TAAAAATCGCAGGACAGAGGCCAATGCGCAGAACAGCAGATTTGGGGTCGGCAGACCAAAGAAATTTCCCAGAAAAAAGGAAAAATTGTACTGCATTTGTCGTACTCCATATGATGACACAAAGTAAG-CTAACCTA-CAA-------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000300910:111177-111478 +		AAGA--------------------AGTGGCGATCCAAATATGGACTTAAAACGGTAAATATTGAAA---TTTGCT-----------ATT---CAAACAATT------------------TG---------------------------------------------------------------------------------------TCACATAAATTTTCAGTTCAGAGACAAATGTGCAGAACAACAAATTTGGTGTCGGCAGGCCAAAGAAATTGACAAGAAGAAAGGAAAAATTGTATTGCATTTGTCGTACTCCATATGATGACACAAAGTAAG-CTTAAATG-CATTTT--TAA-------------TAAACACCTCA------------------CTTTTAATTAA-------CAAT---TTATA---------ATTTAGGTTTTACGTGGGGTGCGACTTATGCAGCAATTGGTTTCATGGTGATTGTG
droTak1	scf7180000415208:80098-80414 +		A---------------------------GTGAGCCAAATATAGACTTAAAAAGGTACGTGTTTAAA---TGTGAT-----------TTT---CAA----TT------------------TG----------------------ACATAATTAA------------------------------------------------CTAAACACTACAAAAATTCGCAGGGCAGAGGCAAATGCGCAGCACAGCAAACATGGTATTGGCAGACCAAAAAAATTGACAAGAAGAAAGGAAAAATTGTATTGCATTTGTCGTACTCCATATGATGACACAAAGTGAG-ATTTAATA-CATTTTAAT---------------GTAAGACAGCAC------TTT----------TTATAATGA-------TATT---TTATAATT--ATCAATTTAGGTTTTACGTGGGGTGTGACTTATGCAGCAATTGGTTCCATGGGGATTGTG
droEug1	scf7180000409184:102594-102904 +		AAGA--------------------AGTGGCGAGCCAGCAACTGACTTTAAAGGGTAAGAATTTGCGATGTA----TATATATT---T------------A---------------------T-----------------------------AA------------------------------------------------CTAAATATAAGAACAAATCTCAGGCCAGAGGACAATACACAGAACAGTAGGCATTGTGTTGGCAGACCAAAGAAATTAACAAGAA-AAAGGAAAAATTGTATTGTATTTGTCGTACTCCATATGATGACACAAAGTAAG-TTTAAATA-TACATAGC-----------------------CGCAA------TTTTAATTTAGTT-------AATTAATT----TTCC---A-A-T--GTTTATTAAGGTTTTACGTGGGGTGTGACTTATGCAGCAATTGGTTCCATGGAGATTGTG
dm3	chr3L:235296-235608 -		AA-----------------------GTGGCGAACCAAATTTAGATTTTAAACGGTACGTATACTCA---TGCACT-----------TGTGTGCAA----TA------------------TG----------------------ATATATCTAAT-AATACCTAAA------------------------------------------------TCAAATCGTAGGACAGAG------GTGCAGAACCCCAGACATGGCGCAGGCCGACCAAAAAAGTTGACAAGAAAAAAGGAAAAGTTGTATTGCATTTGCCGTACTCCATATGATGACACAAAGTAATGCAGAAATG-CATATTCTTAA--------------------CGCG------------------CTTTTAATTAA-------TATA---TTGTAATTGTGTCTATGTAGGTTTTACGTGGGGTGCGACTTGTGCAGCAATTGGTTCCATGGGGATTGTG
droSim2	3l:205757-206072 -		AAGA--------------------AGTGGCGAACCAAATTTAGATTTTAAACGGTACTTATACGCG---TAGACT-----------TGTGTGAAA----TA------------------TG----------------------ATATATCTAAT-AAAACCTAAA------------------------------------------------TCAAATTGTAGGACAGAG------GTGCAGAACCCCAGACATGGCGCCGGCCGACCAAAAAAGTTGACAAGAAAAAAGGAAAAGTTGTATTGCATTTGCCGTACTCCATATGATGACACAAAGTAATGCAGAAATG-CATATTCTTAA--------------------CGCA------------------CTGTTAATTAA-------TATA---TTTTAATTGTTTCTATGTAGGTTTTACGTGGGGTGCGACTTGTGCAGCAATTGGTTCCATGGGGATTGTG
droSec2	scaffold_2:262822-263137 -		AAGA--------------------AGTGGCGAACCAAATTTAGATTTTAAACGGTACGTATACGCG---TGGACT-----------TGTGTGAAA----TA------------------TG----------------------ATATATCTAAT-AAAACCTAAA------------------------------------------------TCAAATTGTAGGACAGAG------GTGCAGAACCCCAGACATGGCGCCGGCCGACCAAAAAAGTTGACAAGAAAAAAGGAAAAGTTGTATTGCATTTGCCGTACTCCATATGATGACACAAAGTAATGCAGAAATG-CATATTCTTAA--------------------CGCA------------------CTGTTAATTAA-------TATA---TTGTAATTGTGTCTATGTAGGTTTTACGTGGGGTGCGACTTGTGCAGCAATTGGTTCCATGGGGATTGCG
droYak3	3L:213790-214102 -		AAGA--------------------AGTGGCGAAGCAAATATAGATTTTAAACGGTACGTATAAGAA---TGGGCT-----------TCTGTGACA----TT------------------TA----------------------ATGTATTAAAT-TAATCCCAA------------------------------------------------AACAAATCGCAGGTCAGA------TGCGCAGAACCCCAGACATGGCGCCGGCCGACCAAAAAAGTTGACAAGAAAAAAGGAAAAGTTGTATTGCATTTGCCGTACTCCATACGACGACACAAAGTAAT-TATAATTG-TATATTCCTAA--------------------CGCA------------------CTGTTAATTAA-------TATA---TTGTAATT--GTCCTTGTAGGTTTTACGTGGGGTGCGACTTGTGCAGCAATTGGTTCCATGGGGATTGTG
droEre2	scaffold_4784:224062-224376 -		AAGA--------------------AGTGGCGAACCCAATTCAGATTTTAAACGGTACGTATACAAA---TGGTCT-----------TTTGAGCCA----TT------------------AGCT--------------------ATATATTTTAT-AAAAACCAAA------------------------------------------------ACAAATCGCAGATCAGAG------GCGCAAAACCCCAGACATGGCGCCGGCCGACCAAAAAAGTTGACAAGAAAAAAGGAAAAGTTGTATTGTATTTGCCGTACTCCATATGATGACACAAAGTAAT-TATAAATG-CACATTCCTAA--------------------CGCA------------------TTGTTAATTAA-------TATA---TTGTAATT--GTCCATGTAGGTTTTACGTGGGGTGCGACTTGTGCAGCAATTGGTTCCATGGGGATTGTG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

ACTTCAGT---GTTTACTGAACGACTGATGGATCAGAATAATGAACACAAGCGGTAAGTAGAAAT-----CTAAA-------TAAT----------TTGAA---------------CGGGAC------------------------------AT-AACATTTACA-----TTA----------AATTGCAGTCACTCCAAACCATCTATGGGCCGCAGTCTTGGAACGGAGCCACCTACGCTGCATAACAGACACGCTGTTGGTCGGCCTAAGAAGATGACTAGGAAAAGGGAGAAGTTATATTGTATATGCCGTAAGCCCTATGATGACACTAAGTAAG-TCCACATT-TAAACCAC-------------TTC-------CGGA-------------------CTTGACTTA--------AGCATAC---C-T-T--CTTCTTGTAGGTTTTATGTTGGCTGCGACTTGTGCAGCAATTGGTTCCATGGTGACTGTG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...............................................................................................................................................................................................................................................................................AGAAGATGACTAGGAAAAGG...............................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................T-AACATTTACA-----TTA----------AATTGCAGAA.................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TGATGGATCAGAATAATGAACACAAGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAATTGGTTCCATGGTGA.....	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................ACGCTGTTGGTCGGCCTA...................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GAACGGAGCCACCTACGCTGC..............................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GACTGATGGATCAGAATAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................T-AACATTTACA-----TTA----------AATTGCAG...................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................AACGGAGCCACCTACGCTGCATAAC.........................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................ATT-TAAACCAC-------------TTC-------CGGA-------------------C.............................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................AAGATGACTAGGAAAAGGGAGAAGTTA......................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................CAGAATAATGAACACAAGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................ACAGACACGCTGTTGGTCG........................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TCCAAACCATCTATGGGCCGCA.........................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................ATTGTATATGCCGTAAGCCCTATGAT...........................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................AGAAGATGACTAGGAAAAGGGAGAA..........................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TGGGCCGCAGTCTTGGAACGG.............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................CTAGGAAAAGGGAGAAGT........................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GATGGATCAGAATAATGAACACAAGCGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................GACACGCTGTTGGTCGGCCTAAGAAGAT............................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................TATGGGCCGCAGTCTTGGAAC...............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCTGCGACTTGTGCA........................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................ATGGGCCGCAGTCTTGGAACGGAGCCACC......................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................CGGGAC------------------------------AT-AACATTTACA-----TTA----------AATTGCAGAA.................................................................................................................................................................................................................................................................................................................	31	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GATGGATCAGAATAATGAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TTTACTGAACGACTGATGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................A---------------CGGGAC------------------------------AT-AACATTTACA-----TTA----------AATTGCAG...................................................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.....................CGACTGATGGATCAGAATAATGAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TCCAAACCATCTATGGGCCGC..........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................GATGACTAGGAAAAGGGAGAAGT........................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................CAGTCTTGGAACGGAGCCACC......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGGTTCCATGGTGACTGTG	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................TTC-------CGGA-------------------CTTGACTTA--------AGCAT........................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................CTCCAAACCATCTATGGGCCG...........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TCACTCCAAACCATCTATGGGC.............................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................CGGGAC------------------------------AT-AACATTTACA-----TTA----------AATTGCAG...................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................CTGCATAACAGACACGCTGTT.............................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................CCAAACCATCTATGGGCCGCAGTCT.....................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................AGCCACCTACGCTGCATAAC.........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TATGGGCCGCAGTCTTGGAA................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................GCCACCTACGCTGCATAACA........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGTGCAGCAATTGGT...............	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................AGTCTTGGAACGGAGCCACCTACGCTGC..............................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................GTTGGTCGGCCTAAGAAGATGAC.........................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................ACAGACACGCTGTTGGTCGGC......................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................TATATGCCGTAAGCCCTATGATGACAC......................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................AACGGAGCCACCTACGCTGCA.............................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................CTTGGAACGGAGCCACCTACG..................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................AGAAGATGACTAGGAAAA.................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................TAAGAAGATGACTAGGAAAAG................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................GTTATATTGTATATGCCGTAAGCC..................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAGGTTTTATGTTGG......................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ACGTCAGT---GTTCGCTGAACGTCTGATGGATCAGAATACGGAGCACAAACGGTTAGTAGTAGTA---TATACA----TA-----TATATGTAG----TA------------------TA----------------------ATTTCTATATT-GACATCAAATATAATTTG----------TATTGCAGTCACTCGAAGCCTTCGATTGCGCGCAGTCTTGGCGCAGAGCCATCAACGTTGCACAGCCGGCACAGTGTGGGCCGACCCAAGAAGATGGCACGCAAGAAGGAGAAGCTATATTGCATATGCCGCAAGCCCTATGATGACACCAAGTAAT-ACACAATG-AATATA--TGCTTTTA-----T--A------CTAT------------------CTATATACTTA-------TCCA---TCATCATTATATAATTGTAGATTCTATGTCGGTTGCGATCTGTGCAGCAATTGGTTCCATGGTGATTGCG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................................................................................................................................................................................................................................CAACGTTGCACAGCCGGCACAGT................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
.........................TGATGGATCAGAATACGGAGCACAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
...................................GAATACGGAGCACAAACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0
.........................TGATGGATCAGAATACGGAGCACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................CCAAGAAGATGGCACGCAAGAAGGAG............................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0
..........................GATGGATCAGAATACGGAGCACAAACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................TCGAAGCCTTCGATTGCGCGCAGTCT.....................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TCCA---TCATCATTATATAATTG.....................................................	21	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTTGCGATCTGTGCAGCA.....................	20	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................CAGTGTGGGCCGACCCAAGAAGATGG..........................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0

droGri2

ACGACGACGATCTTTACTGAAACTCTGTCGGATAAAAATGTTGGCCACAAGCGGTGAGTGGATAAA---ATTGCT-----------AAT---TAGCCCGTT--------------------------T----AGATGAT------------------CAATTACT-----TTGTATTAT---CTGCTGCAGACATTCAAAACCTTCAATTACAAAAGGCGCTGGAACCAAACCAACATCGCTGCACAGCCGGAAAAGCGTTGGTCGGCCCAAGAAGATGTCCAGAACAAATGATAAGGTTTATTGCATATGTCGGAAACCATATGATGAAACAAAGTAAA-TAAATACA---CATT--TAA--------------------TGCA-CAACTT--T-TAATCAGCTTTTACTAAG-------TGTG---TTGCATTTTCAACTTCGCAGGTTCTATGTCGGCTGCGATATGTGTAGCAATTGGTTCCATGGCGATTGTA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...............................................................................................................................................................................................................................................................AGCGTTGGTCGGCCCAAGAAGATGT..........................................................................................................................................................................................................................	25	1	1.00	1	0	1
............................................................................................................................................................................................................................................................................................................................AACCATATGATGAAACAAAGT.................................................................................................................................................................	21	1	1.00	1	0	1

droWil2

TCATCAAC---CTTTGAAGACCGTCTTACAGAGCATAATGTAGAAACTAAGCGGTAAGTTTTAT--------------------------------CCGTA---------------TGGAGAAAAAAA----TATTATTTAAT------------------TAT-------TATTTTATTTATAAATGCAGACAAGGTAAATTAACAACCAGCCGGAATCTCAGTGCAGAAACAAGTGCACCCAATAATAGACACAGTGTTGGTAGGCCAAAGAAACTGAAAAGAAAAAAAGAAAAGCTGTATTGCATTTGTCGCACACGCTATGATGAGACTAAGTAAG-ACTAAATT-G-GATA--AA------ATAAT---------------CAAGAT--CAAATCAATA------TTAA-------CAGT---TTAAAA----TTTTTACTAGGTTTTATGTCGGCTGTGACTTGTGTAGCAATTGGTTTCATGGCGATTGCG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTAGCAATTGGTTTCATGGC.......	24	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................CTCAGTGCAGAAACAAGTGC...................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................AACAACCAGCCGGAATCTCAGTGC...............................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
............TTTGAAGACCGTCTTACAGAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
...........................ACAGAGCATAATGTAGAAACTAAGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................GTGCAGAAACAAGTGCACC................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................ACAGTGTTGGTAGGCCAAA..................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTTTCATGGCGATTGC.	20	1	1.00	1	0	0	0	1	0

dp5

GGATCCAT---ATTTTCCGATCGTCGCGATGAGCAAAATATTGAACAGAAGCGGTAAGTAGCGGT-----AGGAC-------TGTTT---AGTCATT----------------------GGCAACAAT----CATTGCTCATT------------------TGC-------TGTTTTCT---CAGG------TGTGTCAAGGTCAGCACCAGTCGAAATCTCCGGGAGGAAGCCCTTGCAGACAACAGCAGACATGGCGTCGGAAGGCCTAAGAAGTTGACAAGGAAAAAGGAAAAGCTATATTGCGTTTGTCGCACACCTTACGATGAAACAAAGTATG-TCCAAATC--ATATCAA-------------AAT-------TG-------------TATCAAAAT-------AATCATTTGTGCGTGC---T-TT--TTTCCACTCAGATTTTATGTGGGCTGTGACCTGTGCAGCAATTGGTTTCATGGCGATTGTG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................TGAGCAAAATATTGAACAGAAGCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	0	0	0	0	0	0	0	4	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCTGTGACCTGTGCAGCAATTGG................	26	1	2.00	2	0	0	0	0	0	0	0	2	0	0
....................................................GGTAAGTAGCGGT-----AGGAC-------TGT.............................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................TGAGCAAAATATTGAACAGAAGCGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGCTGTGACCTGTGCAGCAA....................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................GAAGTTGACAAGGAAAAAGGAAAAGC........................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................TGGCGTCGGAAGGCCTAAGAAGTTGACA........................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TCTCCGGGAGGAAGCCCTTGCAGAC...............................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................CGTCGGAAGGCCTAAGAAGTT............................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

GGATCCAT---ATTTTCCGATCGTCGCGATGAGCAAAATATTGAACAGAAGCGGTAAGTAGCGGT-----AGGAC-------TGTTT---AGTCATT----------------------GGCAACAAT----CATTGCTCATT------------------TGC-------TGTTTTCT---CAGG------TGTGTCAAGGTCAGCACCAGTCGAAATCTCCGGGAGGAAGCCCTTGCAGACAACAGCAGACATGGCGTCGGAAGGCCTAAGAAGTTGACAAGGAAAAAGGAAAAGCTATATTGCGTTTGTCGCACACCTTACGATGAAACAAAGTATG-TCCAAATC-CATATCAA-------------AAT-------TG-------------TATCAAAAT-------AATCATTTGTGCGTGC---T-TT--TTTCCACTCAGATTTTATGTGGGCTGTGACCTGTGCAGCAATTGGTTTCATGGCGATTGTG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............................................................................................................................................................................................................AGCACCAGTCGAAATCTGG...................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................CATGGCGTCGGAAGGCCTAAGAA...............................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................GCAGACAACAGCAGACATGGCG...............................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................CGTTTGTCGCACACCTTAC..............................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCTGTGCAGCAATTGGTTTCAT..........	25	1	1.00	1	0	1	0	0	0	0

droAna3

AGCT---------TCTCCGATCGACGTTCCGAGTCAAACTCGGAATTAAAAAGGTGACTATCAGTGGCTTC----TTTATCTT---G------------T---------------------T-----CCA------------T--------TGT-TATAACCATG-----------------------------------------------TTGTATCGCCAGGTCGGAGCCCAATGCCCAAAACAGCAGGATTGGAGTGGGTAGGCCCAAGAAAATGATACGGAAAAAGGAGAAATTGTACTGCGTTTGCCGCACGCCATATGATGACACAAAGTATG-TTTTACTAACAA------------------GTC-------TG---------TTTAAATTCAGAT-------ATTCA----TGTTTCC---G-ATC--TCCCTTTTAGGTTCTATGTGGGCTGCGACTTGTGCAGCAATTGGTTCCACGGCGATTGTG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....................................................................................................................................................................................................................................................................................................................TTGCCGCACGCCATATGATGACACAA....................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
................................GTCAAACTCGGAATTAAAAAGGTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................ATACGGAAAAAGGAGAAATT.......................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0

droBip1

AGCT---------------------TTTCCGAGTCAAACTCGGAATTGAAGAGGTACCTATTAGTGACTTT----CACATATT---C------------T---------------------T-----GCA------------T--------TGCTATAACCCAAT-----------------------------------------------CCCTATCCCTAGGTCGGAACCGAATGCCCAAAACAGCAGGCATGGAGTAGGCAGGCCCAAGAAAATGATAAGGAAGAAGGAGAAACTATACTGCGTTTGCCGCACGCCATACGATGACACAAAGTATG-TCTACAAA-TAGGG--------------------------TG---------TTCAGATTAAGAT-------ATTCATGT----TTCC---G-ATC--TCGTTTTAAGGTTTTACGTGGGCTGCGACCTGTGCAGCAACTGGTTCCACGGCGAGTGTG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGCT---------TCTCAGATCGCCGTAGGGAATCAGATGTCGAACTAAAGAGGTATGTATCTAAA---CTTGTA-----------TAT---TTGTT-GT---------------------T-----CCTAATAT----------------------TGATTAT------------------------------------------------TATATATCACAGATCCGAGCCAAATTCTCACAACAACAGGCATGGTGTTGGCCGGCCAAAGAAGTTGACCAAAAGAAGGGAGAAGCTTTACTGCGTCTGCCGTACTCCATATGATGATACAAAGTATG-TATAATGA-TATTTC--AA------ATCAT---------------AAATCA--CAAATCTA-------AATCATAAATT----T---TTATGA-------TTTTTAGGTTTTACGTTGGCTGCGACTTGTGCAGCAATTGGTTCCATGGCGACTGCG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAAA--------------------AGTGGCGATCCAAATATAGACATTAAGCGGTAAGTTTTATAG---AAGAAT-----------TATATGAAC----T-------------------TG----------------------TTA----TTAT-TAAAGCCAAT-----------------------------------------------TAAAATTCACAGATCCGACTCAAATGCGCAGAACAGCAGACATGGTGTTGGCAGACCAAAGAAGTTGACAAAGAAAAAGGAAAAGTTATATTGCATTTGTCGTACTCCATATGATGATACAAAGTGAG-TTAATAAA-CACTTT--TAT-------------ATAAGACAGCA------------------CTTTT-----------------ACT---G-AT---AAAATTTTAGGTTTTACGTGGGATGCGACCTATGCAGCAATTGGTTTCATGGTGACTGTG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACAGAGGCAAATACGCAGAACAGCAGGCATGGTGTCGGCAGGCCTAAGAAATTTACCAGGAAAAAGGAAAAGTTGTATTGCATTTGTCGTACTCCATATGATGACACAAAGTAAG-TTAACAAA---AATT--TGTTTTTT-----T--T------TTAT------------------ATCTGCCTTGA-------TT-TACA---A-C-T--GTTAATTTAGGTTTTACGTTGGGTGTGACCTATGCAGCAATTGGTTTCATGGTGATTGTG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AG------------------------TTGCGATCCTGAGATGGATTTTAAACGGTAATTATATAAG---TGTTTT-----------TTTTTGTAA----TATTCTGTGTTATTGAA---CG----------------------ACTTATTAAAC-TAAACTGAG------------------------------------------------TAAAAATCGCAGGACAGAGGCCAATGCGCAGAACAGCAGATTTGGGGTCGGCAGACCAAAGAAATTTCCCAGAAAAAAGGAAAAATTGTACTGCATTTGTCGTACTCCATATGATGACACAAAGTAAG-CTAACCTA-CAA-------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AAGA--------------------AGTGGCGATCCAAATATGGACTTAAAACGGTAAATATTGAAA---TTTGCT-----------ATT---CAAACAATT------------------TG---------------------------------------------------------------------------------------TCACATAAATTTTCAGTTCAGAGACAAATGTGCAGAACAACAAATTTGGTGTCGGCAGGCCAAAGAAATTGACAAGAAGAAAGGAAAAATTGTATTGCATTTGTCGTACTCCATATGATGACACAAAGTAAG-CTTAAATG-CATTTT--TAA-------------TAAACACCTCA------------------CTTTTAATTAA-------CAAT---TTATA---------ATTTAGGTTTTACGTGGGGTGCGACTTATGCAGCAATTGGTTTCATGGTGATTGTG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

A---------------------------GTGAGCCAAATATAGACTTAAAAAGGTACGTGTTTAAA---TGTGAT-----------TTT---CAA----TT------------------TG----------------------ACATAATTAA------------------------------------------------CTAAACACTACAAAAATTCGCAGGGCAGAGGCAAATGCGCAGCACAGCAAACATGGTATTGGCAGACCAAAAAAATTGACAAGAAGAAAGGAAAAATTGTATTGCATTTGTCGTACTCCATATGATGACACAAAGTGAG-ATTTAATA-CATTTTAAT---------------GTAAGACAGCAC------TTT----------TTATAATGA-------TATT---TTATAATT--ATCAATTTAGGTTTTACGTGGGGTGTGACTTATGCAGCAATTGGTTCCATGGGGATTGTG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AAGA--------------------AGTGGCGAGCCAGCAACTGACTTTAAAGGGTAAGAATTTGCGATGTA----TATATATT---T------------A---------------------T-----------------------------AA------------------------------------------------CTAAATATAAGAACAAATCTCAGGCCAGAGGACAATACACAGAACAGTAGGCATTGTGTTGGCAGACCAAAGAAATTAACAAGAA-AAAGGAAAAATTGTATTGTATTTGTCGTACTCCATATGATGACACAAAGTAAG-TTTAAATA-TACATAGC-----------------------CGCAA------TTTTAATTTAGTT-------AATTAATT----TTCC---A-A-T--GTTTATTAAGGTTTTACGTGGGGTGTGACTTATGCAGCAATTGGTTCCATGGAGATTGTG	Size	Hit Count	Total Norm	Total
No Reads

dm3

AA-----------------------GTGGCGAACCAAATTTAGATTTTAAACGGTACGTATACTCA---TGCACT-----------TGTGTGCAA----TA------------------TG----------------------ATATATCTAAT-AATACCTAAA------------------------------------------------TCAAATCGTAGGACAGAG------GTGCAGAACCCCAGACATGGCGCAGGCCGACCAAAAAAGTTGACAAGAAAAAAGGAAAAGTTGTATTGCATTTGCCGTACTCCATATGATGACACAAAGTAATGCAGAAATG-CATATTCTTAA--------------------CGCG------------------CTTTTAATTAA-------TATA---TTGTAATTGTGTCTATGTAGGTTTTACGTGGGGTGCGACTTGTGCAGCAATTGGTTCCATGGGGATTGTG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACGTGGGGTGCGACTTGTGCAGC......................	26	1	34.00	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	1	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	2	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCAATTGGTTCCATGGGGATTG..	26	1	19.00	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACGTGGGGTGCGACTTGTGC.........................	23	1	18.00	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACGTGGGGTGCGACTTGTGCAGC......................	27	1	16.00	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
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...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGCAGCAATTGGTTCCATGGG.......	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCAGCAATTGGTTCCATGG........	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAATTGGTTCCATGGGGATT...	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................ACAGAG------GTGCAGAACCCCAGACAT...................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................TTGACAAGAAAAAAGGAAAAGTTGTATT..................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TA---TTGTAATTGTGTCTATGTAGGT................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................ACCAAAAAAGTTGACAAGAAAAAAGGA.............................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AAGA--------------------AGTGGCGAACCAAATTTAGATTTTAAACGGTACTTATACGCG---TAGACT-----------TGTGTGAAA----TA------------------TG----------------------ATATATCTAAT-AAAACCTAAA------------------------------------------------TCAAATTGTAGGACAGAG------GTGCAGAACCCCAGACATGGCGCCGGCCGACCAAAAAAGTTGACAAGAAAAAAGGAAAAGTTGTATTGCATTTGCCGTACTCCATATGATGACACAAAGTAATGCAGAAATG-CATATTCTTAA--------------------CGCA------------------CTGTTAATTAA-------TATA---TTTTAATTGTTTCTATGTAGGTTTTACGTGGGGTGCGACTTGTGCAGCAATTGGTTCCATGGGGATTGTG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................................................................................................................................................................................................................................TGCAGAACCCCAGACATGGCGCCGGC..........................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................AGAG------GTGCAGAACCCCAGACATGGCGC..............................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
.....................................................................TAGACT-----------TGTGTGAAA----TA------------------TG----------------------AT.................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGACTTGTGCAGCAATTGGTTCCA...........	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCGACTTGTGCAGCAATTGGT...............	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................GAG------GTGCAGAACCCCAGACATGGCGC..............................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................AGAG------GTGCAGAACCCCAGACATGGCG...............................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGGTTCCATGGGGATT...	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TGCAGAACCCCAGACATGGCGCCGGCCGA.......................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................CCAGACATGGCGCCGGCCGAC......................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TGCAGAACCCCAGACATGGCGCCGG...........................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................TGCAGAACCCCAGACATGGCGCCGGCCGAC......................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................AAAAGTTGACAAGAA....................................................................................................................................................................................................................	15	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................AAAAAGTTGACAAGA.....................................................................................................................................................................................................................	15	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCGACTTGTGCAGCGTC...................	20	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

AAGA--------------------AGTGGCGAACCAAATTTAGATTTTAAACGGTACGTATACGCG---TGGACT-----------TGTGTGAAA----TA------------------TG----------------------ATATATCTAAT-AAAACCTAAA------------------------------------------------TCAAATTGTAGGACAGAG------GTGCAGAACCCCAGACATGGCGCCGGCCGACCAAAAAAGTTGACAAGAAAAAAGGAAAAGTTGTATTGCATTTGCCGTACTCCATATGATGACACAAAGTAATGCAGAAATG-CATATTCTTAA--------------------CGCA------------------CTGTTAATTAA-------TATA---TTGTAATTGTGTCTATGTAGGTTTTACGTGGGGTGCGACTTGTGCAGCAATTGGTTCCATGGGGATTGCG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.......................................................ACGTATACGCG---TGGACT-----------TGTG........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGTGGGGTGCGACTTGTGCAGC......................	25	1	1.00	1	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTGGGGTGCGACTTGTGCAG.......................	23	1	1.00	1	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................TGCCGTACTCCATATGATGACACAAAG..................................................................................................................................................................	27	1	1.00	1	1	0	0	0
.....................................................................................................................................................................................................................................................................................................AAAGTTGTATTGCATTTGCC.........................................................................................................................................................................................	20	1	1.00	1	1	0	0	0
..............................................................................................................................................................................................................................................................................................AAAAGGAAAAGTTGTATTGCATTTGCC.........................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACGTGGGGTGCGACTTGTGCAGC......................	27	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTGGGGTGCGACTTGTGCAGCA.....................	25	1	1.00	1	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAATTGTGTCTATGTAG..................................................	20	1	1.00	1	0	0	0	1

droYak3

AAGA--------------------AGTGGCGAAGCAAATATAGATTTTAAACGGTACGTATAAGAA---TGGGCT-----------TCTGTGACA----TT------------------TA----------------------ATGTATTAAAT-TAATCCCAA------------------------------------------------AACAAATCGCAGGTCAGA------TGCGCAGAACCCCAGACATGGCGCCGGCCGACCAAAAAAGTTGACAAGAAAAAAGGAAAAGTTGTATTGCATTTGCCGTACTCCATACGACGACACAAAGTAAT-TATAATTG-TATATTCCTAA--------------------CGCA------------------CTGTTAATTAA-------TATA---TTGTAATT--GTCCTTGTAGGTTTTACGTGGGGTGCGACTTGTGCAGCAATTGGTTCCATGGGGATTGTG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACGTGGGGTGCGACTTGTGCAGC......................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................ATA---TTGTAATT--GTCCTTGTAGAAA...............................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGACTTGTGCAGCAATTGGTTCC............	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...A--------------------AGTGGCGAAGCAAATATAGATTTTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................AGTGGCGAAGCAAATATAGATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

AAGA--------------------AGTGGCGAACCCAATTCAGATTTTAAACGGTACGTATACAAA---TGGTCT-----------TTTGAGCCA----TT------------------AGCT--------------------ATATATTTTAT-AAAAACCAAA------------------------------------------------ACAAATCGCAGATCAGAG------GCGCAAAACCCCAGACATGGCGCCGGCCGACCAAAAAAGTTGACAAGAAAAAAGGAAAAGTTGTATTGTATTTGCCGTACTCCATATGATGACACAAAGTAAT-TATAAATG-CACATTCCTAA--------------------CGCA------------------TTGTTAATTAA-------TATA---TTGTAATT--GTCCATGTAGGTTTTACGTGGGGTGCGACTTGTGCAGCAATTGGTTCCATGGGGATTGTG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCAGCAATTGGTTCCATGGGGAT....	26	1	3.00	3	0	0	0	0	0	0	3
..................................................................................................................................................................................................................................................AAACCCCAGACATGGCGCCGGCCGACC.....................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTTTTACGTGGGGTGCGACTTG............................	26	1	1.00	1	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................TTTGCCGTACTCCATATGATGACACAAAG..................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................TTGCCGTACTCCATATGATGACACAAAGT.................................................................................................................................................................	29	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACGTGGGGTGCGACTTGTGCA........................	24	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................TATTTGCCGTACTCCATATGATGACAC......................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................GTTGTATTGTATTTGCCGTACTCCATAT..............................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................AAACCCCAGACATGGCGCCGGCC.........................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................AGAAAAAAGGAAAAGTTGTATTGTATT.............................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAATTGGTTCCATGG........	19	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTGGGGTGCGACTTGTGCAGCA.....................	25	1	1.00	1	0	0	0	0	0	1	0

dvi_607

scaffold_10322:350801-351056 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

TGAAGTCACAAATGACTTGCTGACTACCTAGTCTTATTACTTGTGTTCGCCATTCATCTTTAGATTTATTAAACTTGCCCTGTATTGTAAATGTAATTTAACGTCAGTGAGGTTTGGTAGATACCCGGCGTCAGAACCTTGCCTCGGTGGATGCGACGTATTGTCTGTGCGACAACCAGCCGGATTCTTCTACTGATCCTTTTCCCTCTTCAATATAACATATACGGCATTCGGGATACTACTGTGATTCATTCAGGTGTAAATTTGGTGAAGGCCTGAACTGAATTCGTATGGAAGAAGAACATCCAAAATACAACCGACGCTGAACACGTCGTTAACCAAGGTACCACTGACAC *****************************************************************************************************************************************************...........((((.((((..((((((.....))))))..)))).............))))......***************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V116 male body	SRR060683 160_testes_total	SRR060668 160x9_males_carcasses_total	SRR060679 140x9_testes_total	SRR060680 9xArg_testes_total	SRR060681 Argx9_testes_total	SRR060655 9x160_testes_total	SRR060659 Argentina_testes_total	SRR060667 160_females_carcasses_total	SRR060675 140x9_ovaries_total	SRR060672 9x160_females_carcasses_total	SRR060682 9x140_0-2h_embryos_total	M027 male body	SRR060671 9x160_males_carcasses_total	M047 female body	V053 head	M028 head	SRR060662 9x160_0-2h_embryos_total	SRR060664 9_males_carcasses_total	SRR060673 9_ovaries_total	SRR060677 Argx9_ovaries_total	SRR060689 160x9_testes_total	SRR060684 140x9_0-2h_embryos_total	GSM1528803 follicle cells
.....................................................................................................................................................................TGTGCGACAACCAGCCGGATT..........................................................................................................................................................................	21	0	1	2.00	2	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TGGTGGCTACCTAGACTTATTA.............................................................................................................................................................................................................................................................................................................................	22	3	2	2.00	4	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
........................................................................................................................................................GCGCCTTATTGTCTGTGCGGC.......................................................................................................................................................................................	21	3	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................GGTGGGTGCGACGTATTGTCT..............................................................................................................................................................................................	21	1	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TGAAGTCACAAATGACTTGCT...............................................................................................................................................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................GCGTCAGGGCCTTGCCTCGGT................................................................................................................................................................................................................	21	2	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TGTGCGACAACCAGCCGGGTT..........................................................................................................................................................................	21	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................CTGTGATTCATTCAGGTGTAAA.............................................................................................	22	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................CTCGGTGGATGCGGCGTATT..................................................................................................................................................................................................	20	1	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......CACAGATGACTTGCTGACTAC.........................................................................................................................................................................................................................................................................................................................................	21	1	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................TTTGGTGAAGGCCTGGACTGAAT......................................................................	23	1	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................CTTGTGTTCGCCATTCATCTT........................................................................................................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................TGGGATACTACTGTGATTCATTC......................................................................................................	23	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................CGGGGGATGCGACGTATTGTC...............................................................................................................................................................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TACGGCATTCGGGATACTACT.................................................................................................................	21	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......CACAAATGACTTGCTGACTAC.........................................................................................................................................................................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................ACTACTGTGATTCATTCAGGT..................................................................................................	21	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................TGTGCTACAACCAGCCGGATT..........................................................................................................................................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................ACGTCAGTGAGGTTTGGTAGA...........................................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......CACAAATGACTTGCTGACTA..........................................................................................................................................................................................................................................................................................................................................	20	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................GGCGTTCGGGATACTACTGTG..............................................................................................................	21	1	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................CTGTGCGACAACCAGCCGGGT...........................................................................................................................................................................	21	1	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................CGTGCGACAACCAGCCGGATT..........................................................................................................................................................................	21	1	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................GAACTGAATTCGTATGGAAGG..........................................................	21	1	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................GCATTCGGGATACTACTGTGA.............................................................................................................	21	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................CTGTGCGGCAACCAGCCGGAT...........................................................................................................................................................................	21	1	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................CGGCGTCAGGACCTTGCCTCG..................................................................................................................................................................................................................	21	1	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ACTTGCTGGCTACCTAGTCTT.................................................................................................................................................................................................................................................................................................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................ATATACGGCATTCGGGGTACT....................................................................................................................	21	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................CAGCCGGGTTCTTCTACTGAT...............................................................................................................................................................	21	1	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...................CTGACTACCTAGTCTTGTTAC............................................................................................................................................................................................................................................................................................................................	21	1	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................CCCGGCGTCAGGACCTTGCCT....................................................................................................................................................................................................................	21	1	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................TTACTTGTGTTCGCCATTCAT...........................................................................................................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................TCAGGTGTAAATTTGGTGAAG...................................................................................	21	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................CGTCAGGACCTTGCCTCGGTG...............................................................................................................................................................................................................	21	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CGTCGTTAACCGAGGTACCAC......	21	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................GCTGAACGCGTCGTTGACCAA..............	21	2	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................GCGTAAGTGAAGTTTGGTAGA...........................................................................................................................................................................................................................................	21	3	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................CTCAAAACGTCGTTAACCGAG.............	21	3	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................TGAAGGCTTGATCTGAAT......................................................................	18	2	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........................................................................................................TTTGAGGTTTGGTAGATA.........................................................................................................................................................................................................................................	18	2	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................GTAAGTGAAGTTTGGTAG............................................................................................................................................................................................................................................	18	2	6	0.17	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TGGCTACCTAGACTTATTAA............................................................................................................................................................................................................................................................................................................................	20	3	13	0.15	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................TGGTGCTGGCCTTAACTGA........................................................................	19	3	8	0.13	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................CGTTAGCCAAGGAACCTCTG....	20	3	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................GTCACGGAGGTTTGGAAGA...........................................................................................................................................................................................................................................	19	3	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................AACCGCCGCTGAACTTGTCGT.....................	21	3	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..............................................................................................................GGTTTAGTAGCTACCAGGC...................................................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............CGCCTGGCTGACTACCTAG.....................................................................................................................................................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TGATTCATCTACTGCTCCT............................................................................................................................................................	19	3	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

-10.3	-10.1	-9.7