dvi_603

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TCCCAACAGCTACAACAGTGTGCCACAACGACGACGGAGTGAAAACGAAGGTTAGTTAAACTTTTTGTTAAGGACTTTCAGAGGGCGGTATATTTATAAAACTATGTAACATGCCGGAGCAGACAAATTCAGCCCCAAAAAGGATATTTCATAATTTCTGTTTTACTGGCTTGCTGTTTCTCAATCCCTCTGTCTCAGTCTTGTGCTAAGTTAATTTCTATTGATTTTTTCATCTCTTCCTTGTTATACCC ************************************************.....................(((((..(((((((((((((..(((((......))))).))))))(((.(((((.....((((..((((.(((.(((....))).))).))))...))))...))))))))...)))))))....)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060679 140x9_testes_total	M047 female body	SRR060659 Argentina_testes_total	SRR060663 160_0-2h_embryos_total	SRR060664 9_males_carcasses_total	V053 head	SRR060656 9x160_ovaries_total	SRR060681 Argx9_testes_total	V047 embryo
.............................GACGACGGAGTGAAAACGAAGGT.......................................................................................................................................................................................................	23	0	1	2.00	2	0	0	1	1	0	0	0	0	0
..............................ACGACGGAGTGAAAACGAAGGCCC.....................................................................................................................................................................................................	24	3	1	1.00	1	0	1	0	0	0	0	0	0	0
................................GACGGAGTGAAAACGAAG.........................................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0
...........................ACGACGACGGAGTGAAAACGA...........................................................................................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0	0	0
..................................................................................................AAACTATGTAACATGCCGGAGCA..................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0
........................................................................................................................AGACAAATTCAGCCCCAAAAA..............................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0
............................CGACGACGGAGTGAAAACGAAG.........................................................................................................................................................................................................	22	0	1	1.00	1	0	0	0	1	0	0	0	0	0
...................GTGCCACAACGACGACGGA.....................................................................................................................................................................................................................	19	0	1	1.00	1	0	0	0	0	1	0	0	0	0
.................................................................TGTAAAGGACTTTCGGCGGG......................................................................................................................................................................	20	3	5	0.20	1	0	0	0	0	0	1	0	0	0
............................................................................TTCAGAAGGCGCTATATTTG...........................................................................................................................................................	20	3	7	0.14	1	0	0	0	0	0	0	1	0	0
...........ACATCAATGTACCACAACGA............................................................................................................................................................................................................................	20	3	8	0.13	1	0	0	0	0	0	0	0	1	0
..................................................................GTAAAGCACTTTCGGAGGG......................................................................................................................................................................	19	3	14	0.07	1	0	0	0	0	0	0	0	0	1
......................................................................................................................................................................................AATCCCTCTGTCTCCGCCA..................................................	19	3	16	0.06	1	1	0	0	0	0	0	0	0	0
...........................................................ACTTCTTGATAAGGATTTTC............................................................................................................................................................................	20	3	20	0.05	1	0	0	0	0	0	0	0	0	1

AGGGTTGTCGATGTTGTCACACGGTGTTGCTGCTGCCTCACTTTTGCTTCCAATCAATTTGAAAAACAATTCCTGAAAGTCTCCCGCCATATAAATATTTTGATACATTGTACGGCCTCGTCTGTTTAAGTCGGGGTTTTTCCTATAAAGTATTAAAGACAAAATGACCGAACGACAAAGAGTTAGGGAGACAGAGTCAGAACACGATTCAATTAAAGATAACTAAAAAAGTAGAGAAGGAACAATATGGG ************************************************.....................(((((..(((((((((((((..(((((......))))).))))))(((.(((((.....((((..((((.(((.(((....))).))).))))...))))...))))))))...)))))))....)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060665 9_females_carcasses_total	M027 male body	SRR060669 160x9_females_carcasses_total	V116 male body	M047 female body	SRR060666 160_males_carcasses_total	SRR060673 9_ovaries_total	SRR060663 160_0-2h_embryos_total
....................................................................................................................TTCGTCTGTTTAAGTCGGGGTT.................................................................................................................	22	1	1	1.00	1	1	0	0	0	0	0	0	0
...............................................................................................................................................................................CAACGAGTTAGGCAGACCGAG.......................................................	21	3	3	0.33	1	0	1	0	0	0	0	0	0
...............................................................................................................................................................................CAACGAGTTAGGCAGACCGA........................................................	20	3	10	0.30	3	0	1	1	0	0	1	0	0
..................................................................................CCCTCTATAGAAATATTTTGAT...................................................................................................................................................	22	3	6	0.17	1	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................TAAAGATCACTTAAAGAGTAG.................	21	3	9	0.11	1	0	0	1	0	0	0	0	0
................................................................................................................................................................................AACGAGTTAGGCAGACCGAG.......................................................	20	3	9	0.11	1	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................AAAAAGTATTGAAGGAACCAT.....	21	3	12	0.08	1	0	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................AAGAAGTAGAGTAGGAAC........	18	2	14	0.07	1	0	0	0	0	0	0	0	1
............................................................................................................................................................................CGACAACTAGTTAGGTAGAC...........................................................	20	3	17	0.06	1	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................AAAGAGTAGAGAAGGAAAAAGA....	22	3	20	0.05	1	0	0	0	0	0	1	0	0
AGGGTTGTCGATGTAGTT.........................................................................................................................................................................................................................................	18	2	20	0.05	1	0	1	0	0	0	0	0	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_10322:325453-325703 -	dvi_603	TCCCAACAGCTAC-AACA-GT----------------GTGCCACAACGACGACGGAGTGAAAACGAAGGTTAGTTAAACTTTTTGTTAAGGACTTTCAGAGGGCGGTATATTTAT------------------AAA--ACTATGTAACATGCCGGAGCAGACAAATTCAGCCC-----CAAAAAGGATA--------TTTCATAATTT-------------CTGTTTTACTGGCTTGCTGTTTCTCAATCCC-------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTCT-----------------------C-----------------AGT---------------C-------------------------------------TT-------------------------------------------GT-----GCTAA---------------------GTTAATT---------------------------TCTA-----------------------------------------------------TTGA-----------TTTTTTCATCTCTTCCTTGTTATACCC
droMoj3	scaffold_90:1167-1348 +		AAATACTTTCATAAACATATC------TGTAGGTCAA----------------------------------------------T-----------ATAAAAGGAGA-------------AAGCCAATTTAGCCAAA--AATAGCTAGAATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTATTTATTTACTTATTGTTAAAAAGAATTTTAAATAACAAGTTTCAAGCCA-------------------------------------------GA-----GCAAC-----------GGAGGCTTTC----A--------------ATTCAATTTT----------------------------------------------------------------CA-----------ATG----TTTGTTCTCTTTTTATACCC
droGri2	scaffold_15126:8296166-8296271 -		ATTTTTTATAGCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCTCTGATTTTACGTTCTTA----------------------------------------------------------------------AG--TCCTTTTATAC-----------------------C-----------------TGCTGT-----------------------------------------------------------------------------------------------TT------------------ATTTA-------TGTCATTT---------------------------TTTGTAGGGCTT----C----------------------------------------------------------CC-AGTATTTGCTTTTTTATACCC
droWil2	scf2_1100000004954:2239841-2240050 +		AAATAAAGGATTT-------ATACATTG----CTTAT-------------------------------------------------TATACCCTTGCAGTGGGTATTATAAAATTG--------------GTCAGA--TGTCTGTAACGCACAGAAGCAGACGTTTCCGACCG-----CATGAAGTATATAC--ATATA-----------------------------------------------------------------------------------------TATAGCATGAG-------AGCTGAGTCGATCTATCCATGCGATTTACTCAGCCATCTTAAGAGCTA-------------------------------------------------TCGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTG------------------------------A---ATTTTT-TTTCTGTGCTTTTTATACCA
dp5	Unknown_group_290:6191-6347 +		TTTATATCTTTAT-ATATTAT-----------------------------------------------------------------------------------GTT------GTA--------------TTTAAA--AAATTTTGGTATTTTGA----------------------------AATATATAT--ATATA-----------------------------------------------------------------------------------------TTCTGTTTT---------------------------------------------------------------------TTATTTT-TATT----------------------------------------------------------------------------------------TAT--------------------------------------TAATCTTTTTTAGCCTA-----------------------------T-----CCTTATGAACTTTTTGTTCCTT----ATTT------------------------------------------------------------------------------------------------------TTCTTATTCTTTGTAATTATTATACCC
droPer2	scaffold_2881:705-918 -		TTACTTGAACACA------TT------TGTTGCT---------------------------------------------------------AGTTCCGGACAACGGAATTC--CTA--------------GACAAC--AATATACGGCTTCCTGA-GCAGATATCTCAGTGCC-----AGAA--AT------AAATTTGTGACCAATATG--CTGTAGCTTTTGTCTAATCGTGTAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------TG--CCCCCTTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCGCATAAGCTTTGAAATACCCCTT-----------------------------------------------------------------TGG----------GTT----TTATTTATATAATTATACCC
droAna3	scaffold_13022:10661-10876 -		AATTTGTTTTTAT----------------------------------------------------------------------------ACCCTTGCAGAGGGTATTATAATTTTG--------------ATCAAA--AGTGTGCAACGCAGTGAACGAGACATCTCCAACCC-----TAAA--GT------ATATATA-----------------------------------------------------------------------------------------TTCTGGATCAGGATCACCTCCTGAGTCGATATGAGCA----------------------------------------------------------------------TG--TCCGTCTGTCC-----AT----------------C----------------TGTCTGTCTGTCCGTCTGTCTGTTTCTAC----------------------------------------------------------------------------------------------------------GCA-------AACTAGAA------------------------------------------------------------------------AGTTAG----------CTT----TCCTTTCTTTTTTTATACCC
droBip1	scf7180000396554:2151637-2151815 -		CTTGCA--------------------------------------------------------------------------------------------GAGGGCACTATAATTTTG--------------TCAAAA--AATGTGCAACGCAGTGAAGGAGACTTCTCCGACCT-----TATA---C------ATATATA-----------------------------------------------------------------------------------------TTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCA----------------------------------------------------------------------TG--TCCGTCTGTC---------------------------------------------------------TGTCTATTTCTAC----------------------------------------------------------------------------------------------------------GCTGCTTTTCTACTT------------------------------------------------------------------------------TA-----------AC----GCTACCCTGTTTGTTATACCC
droKik1	scf7180000302686:913467-913648 +		TATATTTATTTTA-------------------------------------------------------------------------------------------------AAAATA--------------TT-------------------------AAAAATTCTTTAATTTTGATACGAAAAAAACA--------CTGTGCATCTTTTGTT-----TGC------TGCT----CT----CTCCCGG------------------------------------------------------------------------------------------------------TCTC-------------------------------------------------TCAGTTT------------------------------------------------------------------------------------------------------------------------------------ATC--------------------------------------TC----A--------------GCTCCACTCTCAATTCTTGTTCTCTTTGCCGTTTTACTTGTCGGAG----CCG------------------------------GCTTTTTTCAACATTTCTGTTTTTTATACCC
droFic1	scf7180000453813:193732-193844 -		GCCCAAAGAAAAA----T--C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAGAAATTCTGAT-----TTT------TGCT----TTCTATCCTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTAGATCTGAATGTGTCAAATTTTTGCAAAAAA---------------------------------------------------------TAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAG----------TGT-------TCCACTTTTTTATACCC
droEle1	scf7180000490770:20874-21063 -		TTAAACT--------------------------------------------------------------------------------------TTTCGTTAGGCGGTATAAATATATTCAACCCAACTCTGTCAGA--AGTTTGCAATAAATAAATTAAAAAAAATATAATTT-----CGCT----------------------------------------------GTT----T------------------------------------------------------------T---------------------------------------------------------------------TAAATTTTTGTTTTTTAAAATTACGTTTTCGTGTCATTAAAATC------------------------------------------------------------------------------------------------------------------------------------------------------CTAT-----------GGAAACTATC----G-------------------------------------------------------------------------------------GAATAGCTTATGA---AATA---ATTATAACTTCGTTGTTTTT
droRho1	scf7180000778140:1646-1850 -		TGAAAACAACGTA----GTTA------TACGGACTTT-------------------------------------------------TATAGATTTTCATTTTGTGATATAGATATT--------------TT-GAA--GAT------------------AAGGTCTTCAACGT-----TATGCCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT----------------------------------------------TCTTTTA---------------------------------------------------------------------------------------------------------------------------------------TTTTTAATTTCT------------------AATTT-------TCCTATTT---------------------------TTCCTATGTCAG----CTTACCATAT---AGTCGTCCGATTTTTATCAAAACGAAGATATAG----------TTTTTATTCTTGTTACTTGTTATACCC
droBia1	scf7180000301495:246829-247002 +		AAGCCGAAGTTTG------TT------T-------------------------------------------------------------ACCCTTGTTGTTAAACTTTCAACTTT---------------AGTAAC--ACCATGTGACATTTCTAA--------------------------------------------------------------------------------------------------GGATTGTTGCTGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAATGATGTTACAAAAAATTATTTCATTTTTT------ATTTT------------TATAAC--------------A---------------------------TCTA-----------------TATGTTAGAGTAATCCG------------------------------A---TTT-TTATTCCCTTTCTTGTTTTACCC
droTak1	scf7180000415599:438-646 +		AAATAATGATTATTTTGATTC---ATTG----ATCAT-----------------------------------------------------TATTTTTGAGGAATATTATAAAAATC--------------TT-AAA--AATAAAAGTCATGGTGAAAATAGATAGATTAACCC-----A-AGAGGATTA--------CTATGGTGTTT-------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------TCTTTTTTGCGTACGTCGATCCTAA---------------------------------------------------------------G-----------------------------------------------------------------------------------------------------------------------------TGCTTAATTTTTGGTTCAAAAAATTGATC----------AACCA--------------------------TCATTATTTACGGTCCCTGGTAGTTATACCC
droEug1	scf7180000409554:4040407-4040595 -		GAATTAAAAAGAA----AATT------TGCAACTAAA----------------------------------------------TGTTAATCAATTT----GTACTTTTCGTTTTT------------------AA---------------------------------------------------------------------------------------------------------------------AATAATGAAATAAAGGATCAGATAAATAAA--ATTATATTAT--------------------------------------------------------ATTATTATTATGTTATATTTTTA-AATT----------------------------------------------------------------------------------------TAT--------------------------------------TTACCATTTCAAAAATG-----------------------------T-----AACAA---------------------TTTA------------------------------CTTGTTCCCTTT----C----------------------------------------------------------CC--TTTCTTTGATAATTATACCC
dm3	chr3L:2534706-2534763 -		CCACGGAGGCAAC---------------------------------------------------------------------------------------------TACAACAGTG--------------TTCCCA--GG-CGACGACGCAGCGAAAATGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTGAG
droSim2	node_13110:566-686 -		AAAATTTTGTTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATAAT-------------TTGTGTAAATTTTGTTCTATCTCCCACTCCCACTAGTGGTATCTGGTATCTGATAGTCGAATAACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAG----------CGTTCT-CTCTTGTACATTTTATACCT
droSec2	scaffold_29:116479-116613 -		AAAAAAAAAATTT---------------------------------------------------------------------------------------------TTTAATTTTG--------------TTTC-------------------------------------------------------------------ATATAAT-------------TTGTGTAAATTTTGTTCTATCTCCCACTCCCACTAGTGGTATCTGGTATCTGATAGTCGAATAACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAG----------TGTTCT-CTCTTGTACATTTTATACCC
droYak3	v2_chr2h_random_001:50528-50693 -		AAATTAGTCAAAT----T--C------------------------------------------------------------CGTATAAAGGAATAGTAGAGGCATGTC-------G--------------GTTAAGAAAATGGGCAGATTGGCGAAA--------------CC-----AGTGCGGA-----A--ATATC-------------------------------------------TCCTA----------------------ATTTGTAGAATAATATCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACTTATT----------------------------TTCT------CTCTT------------TATATA------------------------------------------------CCTT-------------------------------------------------ATA----------C-TGTACATATTTTCATTTTTATACCC
droEre2	scaffold_4929:10279237-10279341 -		ATCCTTTGCAATATTCGTTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC------TGCT----TT----TTTAAGA------------------------------------------------------------------------------------------------------TTTA-------------------------------------------------TCTGTCTTTC--AT------------------------------------------------------------------------------------------TT-------------------------------------------GTCCTTC--------------------------AAGA------------------------------CCTTTCCCTT-------------------------------------------------TTG----------CGGTTTCCCCCCTACATTGTTATACCC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

TCCCAACAGCTAC-AACA-GT----------------GTGCCACAACGACGACGGAGTGAAAACGAAGGTTAGTTAAACTTTTTGTTAAGGACTTTCAGAGGGCGGTATATTTAT------------------AAA--ACTATGTAACATGCCGGAGCAGACAAATTCAGCCC-----CAAAAAGGATA--------TTTCATAATTT-------------CTGTTTTACTGGCTTGCTGTTTCTCAATCCC-------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTCT-----------------------C-----------------AGT---------------C-------------------------------------TT-------------------------------------------GT-----GCTAA---------------------GTTAATT---------------------------TCTA-----------------------------------------------------TTGA-----------TTTTTTCATCTCTTCCTTGTTATACCC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...............................................GACGACGGAGTGAAAACGAAGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................ACGACGGAGTGAAAACGAAGGCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GACGGAGTGAAAACGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................ACGACGACGGAGTGAAAACGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................AA--ACTATGTAACATGCCGGAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................AGACAAATTCAGCCC-----CAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................CGACGACGGAGTGAAAACGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................GTGCCACAACGACGACGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AAATACTTTCATAAACATATC------TGTAGGTCAA----------------------------------------------T-----------ATAAAAGGAGA-------------AAGCCAATTTAGCCAAA--AATAGCTAGAATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTATTTATTTACTTATTGTTAAAAAGAATTTTAAATAACAAGTTTCAAGCCA-------------------------------------------GA-----GCAAC-----------GGAGGCTTTC----A--------------ATTCAATTTT----------------------------------------------------------------CA-----------ATG----TTTGTTCTCTTTTTATACCC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
................................................................................................TAAAAGGAGA-------------AAGCCAATTTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	4	0.25	1	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT----------------------------------------------------------------CA-----------ATG----TTTGTTCTCT..........	18	6	0.17	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCA-------------------------------------------GA-----GCAAC-----------GGAGGC.........................................................................................................................................	19	9	0.11	1	0	0	0	0	1	0
....ACTTTCATAAACATATC------TGTAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	9	0.11	1	0	0	0	0	1	0
..ATACTTTCATAAACATATC------TGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	9	0.11	1	0	0	0	0	1	0
........TCATAAACATATC------TGTAGGTCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	9	0.11	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCA-------------------------------------------GA-----GCAAC-----------GGAGGC.........................................................................................................................................	18	9	0.11	1	0	0	0	0	1	0

droGri2

ATTTTTTATAGCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCTCTGATTTTACGTTCTTA----------------------------------------------------------------------AG--TCCTTTTATAC-----------------------C-----------------TGCTGT-----------------------------------------------------------------------------------------------TT------------------ATTTA-------TGTCATTT---------------------------TTTGTAGGGCTT----C----------------------------------------------------------CC-AGTATTTGCTTTTTTATACCC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

AAATAAAGGATTT-------ATACATTG----CTTAT-------------------------------------------------TATACCCTTGCAGTGGGTATTATAAAATTG--------------GTCAGA--TGTCTGTAACGCACAGAAGCAGACGTTTCCGACCG-----CATGAAGTATATAC--ATATA-----------------------------------------------------------------------------------------TATAGCATGAG-------AGCTGAGTCGATCTATCCATGCGATTTACTCAGCCATCTTAAGAGCTA-------------------------------------------------TCGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTG------------------------------A---ATTTTT-TTTCTGTGCTTTTTATACCA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............................................................................................................................................................................................................................................................................................................................CTATCCATGCGATTTACTCAGCCATCT.....................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................ATTTACTCAGCCATCTTAAGAGCTA-------------------------------------------------TCG........................................................................................................................................................................................................................................................................................................................	28	14	0.07	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................TACTCAGCCATCTTAAGAGCTA-------------------------------------------------TCGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C...............................................................	28	20	0.05	1	0	1	0	0	0
..............................................................................................................................................TGTAACGCACAGAAGCAGACGTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................GCCATCTTAAGAGCTA-------------------------------------------------TCGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C...............................................................	22	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................ACTCAGCCATCTTAAGAGCTA-------------------------------------------------TCGG.......................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................TTACTCAGCCATCTTAAGAGCTA-------------------------------------------------TCGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------................................................................	28	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................TTTACTCAGCCATCTTAAGAGC..............................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................CATCTTAAGAGCTA-------------------------------------------------TCGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT..............................................................	21	20	0.05	1	0	0	0	1	0

dp5

TTTATATCTTTAT-ATATTAT-----------------------------------------------------------------------------------GTT------GTA--------------TTTAAA--AAATTTTGGTATTTTGA----------------------------AATATATAT--ATATA-----------------------------------------------------------------------------------------TTCTGTTTT---------------------------------------------------------------------TTATTTT-TATT----------------------------------------------------------------------------------------TAT--------------------------------------TAATCTTTTTTAGCCTA-----------------------------T-----CCTTATGAACTTTTTGTTCCTT----ATTT------------------------------------------------------------------------------------------------------TTCTTATTCTTTGTAATTATTATACCC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................................................................................................................................................TTTTGA----------------------------AATATATAT--ATATA-----------------------------------------------------------------------------------------TTCTGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	2	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCTTTTTTAGCCTA-----------------------------T-----CCTTATG........................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	2	0
..................TAT-----------------------------------------------------------------------------------GTT------GTA--------------TTTAAA--AAATTTTGGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	2	0	0
..TATATCTTTAT-ATATTAT-----------------------------------------------------------------------------------GTT------GTA--------------TT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0

droPer2

TTACTTGAACACA------TT------TGTTGCT---------------------------------------------------------AGTTCCGGACAACGGAATTC--CTA--------------GACAAC--AATATACGGCTTCCTGA-GCAGATATCTCAGTGCC-----AGAA--AT------AAATTTGTGACCAATATG--CTGTAGCTTTTGTCTAATCGTGTAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------TG--CCCCCTTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCGCATAAGCTTTGAAATACCCCTT-----------------------------------------------------------------TGG----------GTT----TTATTTATATAATTATACCC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCGCA.............................................................................................................................	25	20	6.75	135	17	118	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCGCA.............................................................................................................................	26	20	4.35	87	2	85	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCGC..............................................................................................................................	25	20	1.70	34	0	34	0	0	0	0
TTACTTGAACACA------TT------TGTTGCT---------------------------------------------------------AGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	19	1.37	26	0	26	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCGCAT............................................................................................................................	26	20	0.95	19	1	18	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCGCATA...........................................................................................................................	27	20	0.80	16	1	14	1	0	0	0
..................................................................................................................TA--------------GACAAC--AATATACGGCTTCCTGA-GC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.80	16	0	16	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCG...............................................................................................................................	24	20	0.80	16	1	15	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGCTTTGAAATACCCCTT-----------------------------------------------------------------TGG----------G..........................	24	20	0.50	10	0	10	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGC................................................................................................................................	22	20	0.45	9	0	9	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................GAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCGCA.............................................................................................................................	24	20	0.45	9	0	9	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGCTTTGAAATACCCCTT-----------------------------------------------------------------TGG----------...........................	23	20	0.45	9	0	9	0	0	0	0
TTACTTGAACACA------TT------TGTTGCT---------------------------------------------------------AG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	19	0.42	8	0	8	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGC................................................................................................................................	23	20	0.40	8	0	8	0	0	0	0
...................................................................................................................................................................................................TTTGTGACCAATATG--CTGTAGCTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.40	8	8	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCGCAT............................................................................................................................	27	20	0.40	8	0	8	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCGCAA............................................................................................................................	26	20	0.35	7	3	4	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGCTTTGAAATACCCCTT-----------------------------------------------------------------TGG----------GTT----T...................	27	20	0.35	7	0	7	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................TG--CCCCCTTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCG..........................................................................................................................................	24	15	0.33	5	0	5	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGCTTTGAAATACCCCTT-----------------------------------------------------------------TGG----------GTT----....................	26	20	0.25	5	0	5	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCGC..............................................................................................................................	24	20	0.25	5	4	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGCTTTGAAATACCCCTT-----------------------------------------------------------------TGG----------GT.........................	25	20	0.25	5	0	5	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCG.................................................................................................................................	22	20	0.25	5	0	3	0	0	0	2
...................................................................................................................................................................................................TTTGTGACCAATATG--CTGTAGCTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.25	5	5	0	0	0	0	0
TTACTTGAACACA------TT------TGTTGCT---------------------------------------------------------AGTTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	19	0.21	4	0	4	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCG...............................................................................................................................	23	20	0.20	4	1	0	3	0	0	0
.......................................................................................................................................C--AATATACGGCTTCCTGA-GCAGATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.20	4	0	4	0	0	0	0
..................................................................................................................TA--------------GACAAC--AATATACGGCTTCCTGA-GCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.20	4	0	4	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................TG--CCCCCTTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CT...................................................................................................................................	27	15	0.20	3	1	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCGC..............................................................................................................................	19	20	0.20	4	0	3	1	0	0	0
..........................................................................................................................................................................................................................................TAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------TG--CCCCCTTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGC............................................................................................................................................	26	12	0.17	2	0	2	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCGT..............................................................................................................................	24	20	0.15	3	0	3	0	0	0	0
...........................TGTTGCT---------------------------------------------------------AGTTCCGGACAACGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.15	3	0	3	0	0	0	0
............................................................................................................................................TATACGGCTTCCTGA-GCAGATATCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.15	3	0	3	0	0	0	0
.....................................................................................................................................................TCCTGA-GCAGATATCTCAGTGCC-----AG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.15	3	0	3	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................GAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGC................................................................................................................................	21	20	0.15	3	0	3	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCGCAA............................................................................................................................	27	20	0.15	3	0	3	0	0	0	0
.............................................................................................................................................................CAGATATCTCAGTGCC-----AGAA--AT------AAATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	15	0.13	2	0	2	0	0	0	0
.................................................................................................................................................................TATCTCAGTGCC-----AGAA--AT------AAATTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	15	0.13	2	0	2	0	0	0	0
.TACTTGAACACA------TT------TGTTGCT---------------------------------------------------------AGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	19	0.11	2	0	2	0	0	0	0
.TACTTGAACACA------TT------TGTTGCT---------------------------------------------------------AGTTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	19	0.11	2	0	2	0	0	0	0
TTACTTGAACACA------TT------TGTTGCT---------------------------------------------------------AGTTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	19	0.11	2	0	2	0	0	0	0
.TACTTGAACACA------TT------TGTTGCT---------------------------------------------------------AG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	19	0.11	2	0	2	0	0	0	0
TTACTTGAACACA------TT------TGTTGCT---------------------------------------------------------AGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	19	0.11	2	2	0	0	0	0	0
.....TGAACACA------TT------TGTTGCT---------------------------------------------------------AGTTCCGGACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.10	2	0	2	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTC..................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTTTGAAATACCCCTT-----------------------------------------------------------------TGG----------GTT----T...................	26	20	0.10	2	0	2	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CT...................................................................................................................................	25	20	0.10	2	0	2	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................GAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCG...............................................................................................................................	22	20	0.10	2	0	2	0	0	0	0
..............................................................................................................................................TACGGCTTCCTGA-GCAGATATCTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCGCATA...........................................................................................................................	28	20	0.10	2	1	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCGC..............................................................................................................................	26	20	0.10	2	0	2	0	0	0	0
.....................................................................................................................................AAC--AATATACGGCTTCCTGA-GCAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CT...................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0
..................................................................................................................TA--------------GACAAC--AATATACGGCTTCCTGA-G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGCATAAGCTTTGAAATACCCCTT-----------------------------------------------------------------........................................	26	20	0.10	2	0	2	0	0	0	0
..................................................................................................................TA--------------GACAAC--AATATACGGCTTCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	1	0	0	0	1
........................................................................................................................................................................................................................................TGTAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------TG--CCCCCTTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------...............................................................................................................................................	25	11	0.09	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................TAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------TG--CCCCCTTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------T..............................................................................................................................................	24	12	0.08	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................AAT-------------------------------------------------------------------------------------------------------------------------------------------------------------TG--CCCCCTTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------...............................................................................................................................................	22	13	0.08	1	0	1	0	0	0	0
..............................................................................................................................................................................................................TATG--CTGTAGCTTTTGTCTAATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	14	0.07	1	0	1	0	0	0	0
..............................................................................................................................................................................................................TATG--CTGTAGCTTTTGTCTAATCGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	14	0.07	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................T-------------------------------------------------------------------------------------------------------------------------------------------------------------TG--CCCCCTTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCG..........................................................................................................................................	25	15	0.07	1	0	1	0	0	0	0
............................................................................................................................................................GCAGATATCTCAGTGCC-----AGAA--AT------AAATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	15	0.07	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................TG--CCCCCTTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CC...................................................................................................................................	27	15	0.07	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................TG--CCCCCTTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCG.................................................................................................................................	29	15	0.07	1	0	1	0	0	0	0
.................................................................................................................................................................TATCTCAGTGCC-----AGAA--AT------AAATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	16	0.06	1	0	1	0	0	0	0
...............................................................................................................................................................GATATCTCAGTGCC-----AGAA--AT------AAATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	16	0.06	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................T-------------------------------------------------------------------------------------------------------------------------------------------------------------TG--CCCCCTTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGC............................................................................................................................................	23	16	0.06	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................TG--CCCCCTTGAA---------------------------------------------------------CTTCTT......................................................................................................................................................................................................................................................	18	16	0.06	1	0	1	0	0	0	0
.........................................................................................................................................................................................T------AAATTTGTGACCAATATG--CTGTAGCTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	18	0.06	1	0	1	0	0	0	0
.........................................................................................................................................................................................T------AAATTTGTGACCAATATG--..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	18	0.06	1	0	0	0	0	0	1
................................................................................................................................................................................................AAATTTGTGACCAATATG--CTGTAGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	18	0.06	1	0	0	0	0	0	1
TTACTTGAACACA------TT------TGTTGCT---------------------------------------------------------A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	19	0.05	1	0	1	0	0	0	0
.TACTTGAACACA------TT------TGTTGCT---------------------------------------------------------AGTTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	19	0.05	1	0	1	0	0	0	0
.TACTTGAACACA------TT------TGTTGCT---------------------------------------------------------AGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	19	0.05	1	0	1	0	0	0	0
TTACTTGAACACA------TT------TGTTGCT---------------------------------------------------------AGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	19	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTTTGAAATACCCCTT-----------------------------------------------------------------TGG----------GTT----....................	25	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCGCAT............................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................GAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCGCAA............................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CT...................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCGCATT...........................................................................................................................	28	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................CCCTTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CT...................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGCTTTGAAATACCCCTT-----------------------------------------------------------------........................................	20	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCGCATT...........................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................GAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCGCT.............................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGC----CTCGCGCATAAGCTTTGAAATAC..............................................................................................................	26	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................TGA-GCAGATATCTCAGTGCC-----AGAA--A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGC----CTCGCGCATAAGCTTTGAA..................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCGCATAAGCTT......................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................CCCTTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCGCA.............................................................................................................................	29	20	0.05	1	0	1	0	0	0	0
TTACTTGAACACA------TT------TGTTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
.....TGAACACA------TT------TGTTGCT---------------------------------------------------------AGTTCCGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAATACCCCTT-----------------------------------------------------------------TGG----------GTT----TTAT................	23	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................CCTTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CT...................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
...................................................................................................................A--------------GACAAC--AATATACGGCTTCCTGA-G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGC----CTCGCGCATAAGCTTTGAA..................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................CTTCCTGA-GCAGATATCTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCGCATAAGCTT......................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
......GAACACA------TT------TGTTGCT---------------------------------------------------------AGTTCCGGACAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................CCTTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCG.................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................TCCTGA-GCAGATATCTCAGTGCC-----AGAA--......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----.....................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCGCATA...........................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................CCCTTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCG.................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCGCATAAGC........................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................TGTGACCAATATG--CTGTAGCTTTTGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
...................TT------TGTTGCT---------------------------------------------------------AGTTCCGGACAACGGAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCGCATAAG.........................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................TATACGGCTTCCTGA-GCAGATATCTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................TATACGGCTTCCTGA-GCAGATATCTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
..............................................................................................................................................TACGGCTTCCTGA-GCAGATATCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTC..................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
.....TGAACACA------TT------TGTTGCT---------------------------------------------------------AGTTCCGGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCATAAGCTTTGAAATACCCCTT-----------------------------------------------------------------........................................	25	20	0.05	1	0	1	0	0	0	0
....................T------TGTTGCT---------------------------------------------------------AGTTCCGGACAACGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
..................................................................................................................TA--------------GACAAC--AATATACGGCTTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAATACCCCTT-----------------------------------------------------------------TGG----------GTT----TTATT...............	24	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................TATACGGCTTCCTGA-GCAGATATCTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCGT..............................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGT................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CT...................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................GAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCGCATA...........................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCGCAC............................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
............A------TT------TGTTGCT---------------------------------------------------------AGTTCCGGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
..................................................................................................................TA--------------GACAAC--AATATACGGCTTCCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGCTTTGAAATACCCCTT-----------------------------------------------------------------TGG----------GTT----T...................	28	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----CTCGCGCATAAGCTTTGAAATACCC............................................................................................................	26	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA---------------------------------------------------------CTTCTTT------------------------------------------------------------------------------------------------------TGCCGC----CTCGCGG..............................................................................................................................	25	20	0.05	1	1	0	0	0	0	0

droAna3

AATTTGTTTTTAT----------------------------------------------------------------------------ACCCTTGCAGAGGGTATTATAATTTTG--------------ATCAAA--AGTGTGCAACGCAGTGAACGAGACATCTCCAACCC-----TAAA--GT------ATATATA-----------------------------------------------------------------------------------------TTCTGGATCAGGATCACCTCCTGAGTCGATATGAGCA----------------------------------------------------------------------TG--TCCGTCTGTCC-----AT----------------C----------------TGTCTGTCTGTCCGTCTGTCTGTTTCTAC----------------------------------------------------------------------------------------------------------GCA-------AACTAGAA------------------------------------------------------------------------AGTTAG----------CTT----TCCTTTCTTTTTTTATACCC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGTCTGTTTCTAC----------------------------------------------------------------------------------------------------------GCA-------...........................................................................................................................	24	20	0.15	3	3	0	0	0	0	0
......................................................................................................................................AA--AGTGTGCAACGCAGTGAACGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	14	0.07	1	0	0	1	0	0	0
...........................................................................................................................................GTGTGCAACGCAGTGAACGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	14	0.07	1	0	0	1	0	0	0
..............................................................................................................................................TGCAACGCAGTGAACGAGACATCTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	14	0.07	1	0	0	0	1	0	0
..........................................................................................................................................AGTGTGCAACGCAGTGAACGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	14	0.07	1	1	0	0	0	0	0
...............................................................................................................................................GCAACGCAGTGAACGAGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	15	0.07	1	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................TATGAGCA----------------------------------------------------------------------TG--TCCGTCTGTCC-----AT----------------C----------------............................................................................................................................................................................................................................................................................	24	15	0.07	1	0	1	0	0	0	0
.............................................................................................................................................GTGCAACGCAGTGAACGAGACAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	15	0.07	1	0	0	0	0	1	0
.............................................................................................................................................GTGCAACGCAGTGAACGAGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	15	0.07	1	0	1	0	0	0	0
......................................................................................................................................................................................................A-----------------------------------------------------------------------------------------TTCTGGATCAGGATCACCTCC.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	16	0.06	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................GAGCA----------------------------------------------------------------------TG--TCCGTCTGTCC-----AT----------------C----------------............................................................................................................................................................................................................................................................................	21	16	0.06	1	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................TGGATCAGGATCACCTCC.........................................................................................................................................................................................................................................................................................................................................................................................................................	18	18	0.06	1	0	1	0	0	0	0
.........................................................................................................TTATAATTTTG--------------ATCAAA--AGTGTGCAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
..............................................................................................................ATTTTG--------------ATCAAA--AGTGTGCAACGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0

droBip1

CTTGCA--------------------------------------------------------------------------------------------GAGGGCACTATAATTTTG--------------TCAAAA--AATGTGCAACGCAGTGAAGGAGACTTCTCCGACCT-----TATA---C------ATATATA-----------------------------------------------------------------------------------------TTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCA----------------------------------------------------------------------TG--TCCGTCTGTC---------------------------------------------------------TGTCTATTTCTAC----------------------------------------------------------------------------------------------------------GCTGCTTTTCTACTT------------------------------------------------------------------------------TA-----------AC----GCTACCCTGTTTGTTATACCC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TATATTTATTTTA-------------------------------------------------------------------------------------------------AAAATA--------------TT-------------------------AAAAATTCTTTAATTTTGATACGAAAAAAACA--------CTGTGCATCTTTTGTT-----TGC------TGCT----CT----CTCCCGG------------------------------------------------------------------------------------------------------TCTC-------------------------------------------------TCAGTTT------------------------------------------------------------------------------------------------------------------------------------ATC--------------------------------------TC----A--------------GCTCCACTCTCAATTCTTGTTCTCTTTGCCGTTTTACTTGTCGGAG----CCG------------------------------GCTTTTTTCAACATTTCTGTTTTTTATACCC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCCCAAAGAAAAA----T--C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAGAAATTCTGAT-----TTT------TGCT----TTCTATCCTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTAGATCTGAATGTGTCAAATTTTTGCAAAAAA---------------------------------------------------------TAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAG----------TGT-------TCCACTTTTTTATACCC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTAAACT--------------------------------------------------------------------------------------TTTCGTTAGGCGGTATAAATATATTCAACCCAACTCTGTCAGA--AGTTTGCAATAAATAAATTAAAAAAAATATAATTT-----CGCT----------------------------------------------GTT----T------------------------------------------------------------T---------------------------------------------------------------------TAAATTTTTGTTTTTTAAAATTACGTTTTCGTGTCATTAAAATC------------------------------------------------------------------------------------------------------------------------------------------------------CTAT-----------GGAAACTATC----G-------------------------------------------------------------------------------------GAATAGCTTATGA---AATA---ATTATAACTTCGTTGTTTTT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGAAAACAACGTA----GTTA------TACGGACTTT-------------------------------------------------TATAGATTTTCATTTTGTGATATAGATATT--------------TT-GAA--GAT------------------AAGGTCTTCAACGT-----TATGCCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT----------------------------------------------TCTTTTA---------------------------------------------------------------------------------------------------------------------------------------TTTTTAATTTCT------------------AATTT-------TCCTATTT---------------------------TTCCTATGTCAG----CTTACCATAT---AGTCGTCCGATTTTTATCAAAACGAAGATATAG----------TTTTTATTCTTGTTACTTGTTATACCC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AAGCCGAAGTTTG------TT------T-------------------------------------------------------------ACCCTTGTTGTTAAACTTTCAACTTT---------------AGTAAC--ACCATGTGACATTTCTAA--------------------------------------------------------------------------------------------------GGATTGTTGCTGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAATGATGTTACAAAAAATTATTTCATTTTTT------ATTTT------------TATAAC--------------A---------------------------TCTA-----------------TATGTTAGAGTAATCCG------------------------------A---TTT-TTATTCCCTTTCTTGTTTTACCC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AAATAATGATTATTTTGATTC---ATTG----ATCAT-----------------------------------------------------TATTTTTGAGGAATATTATAAAAATC--------------TT-AAA--AATAAAAGTCATGGTGAAAATAGATAGATTAACCC-----A-AGAGGATTA--------CTATGGTGTTT-------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------TCTTTTTTGCGTACGTCGATCCTAA---------------------------------------------------------------G-----------------------------------------------------------------------------------------------------------------------------TGCTTAATTTTTGGTTCAAAAAATTGATC----------AACCA--------------------------TCATTATTTACGGTCCCTGGTAGTTATACCC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GAATTAAAAAGAA----AATT------TGCAACTAAA----------------------------------------------TGTTAATCAATTT----GTACTTTTCGTTTTT------------------AA---------------------------------------------------------------------------------------------------------------------AATAATGAAATAAAGGATCAGATAAATAAA--ATTATATTAT--------------------------------------------------------ATTATTATTATGTTATATTTTTA-AATT----------------------------------------------------------------------------------------TAT--------------------------------------TTACCATTTCAAAAATG-----------------------------T-----AACAA---------------------TTTA------------------------------CTTGTTCCCTTT----C----------------------------------------------------------CC--TTTCTTTGATAATTATACCC	Size	Hit Count	Total Norm	Total
No Reads

dm3

CCACGGAGGCAAC---------------------------------------------------------------------------------------------TACAACAGTG--------------TTCCCA--GG-CGACGACGCAGCGAAAATGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTGAG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................................................................................................AGTG--------------TTCCCA--GG-CGACGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................ACAGTG--------------TTCCCA--GG-CGACGACGCAGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................CCA--GG-CGACGACGCAGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CCACGGAGGCAAC---------------------------------------------------------------------------------------------TACAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................GTG--------------TTCCCA--GG-CGACGACGCAGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................CGCAGCGAAAATGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTGA.	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................GACGCAGCGAAAATGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGT...	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................CGACGACGCAGCGAAAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CACGGAGGCAAC---------------------------------------------------------------------------------------------TACAACAGTG--------------TTCCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................TG--------------TTCCCA--GG-CGACGACGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TCCCA--GG-CGACGACGCAGCGAAAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................G--------------TTCCCA--GG-CGACGACGCAGCGAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................TG--------------TTCCCA--GG-CGACGACGCAGCGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................G--------------TTCCCA--GG-CGACGACGCAGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................GTG--------------TTCCCA--GG-CGACGACGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................CCCA--GG-CGACGACGCAGCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................GACGCAGCGAAAATGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTCGC	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................A--GG-CGACGACGCAGCGAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................G--------------TTCCCA--GG-CGACGACGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................AACAGTG--------------TTCCCA--GG-CGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................CAGTG--------------TTCCCA--GG-CGACGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GACGACGCAGCGAAAATGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGT...	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CACGGAGGCAAC---------------------------------------------------------------------------------------------TACAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................CGACGCAGCGAAAATGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG.....	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AAAATTTTGTTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATAAT-------------TTGTGTAAATTTTGTTCTATCTCCCACTCCCACTAGTGGTATCTGGTATCTGATAGTCGAATAACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAG----------CGTTCT-CTCTTGTACATTTTATACCT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......TGTTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATAAT-------------TTGTGTAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	1.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GTGTAAATTTTGTTCTATCTCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	1.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................AACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAG----------CGTTCT-CT..................	21	3	1.00	3	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................GTGGTATCTGGTATCTGATAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAG----------CGTTCT-CTCTTGTACA..........	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAG----------CGTTCT-CTCTTGTACATT........	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................AACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAG----------CT.........................	15	17	0.06	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAG----------CGTTCT-CTCT................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

AAAAAAAAAATTT---------------------------------------------------------------------------------------------TTTAATTTTG--------------TTTC-------------------------------------------------------------------ATATAAT-------------TTGTGTAAATTTTGTTCTATCTCCCACTCCCACTAGTGGTATCTGGTATCTGATAGTCGAATAACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAG----------TGTTCT-CTCTTGTACATTTTATACCC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

AAATTAGTCAAAT----T--C------------------------------------------------------------CGTATAAAGGAATAGTAGAGGCATGTC-------G--------------GTTAAGAAAATGGGCAGATTGGCGAAA--------------CC-----AGTGCGGA-----A--ATATC-------------------------------------------TCCTA----------------------ATTTGTAGAATAATATCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACTTATT----------------------------TTCT------CTCTT------------TATATA------------------------------------------------CCTT-------------------------------------------------ATA----------C-TGTACATATTTTCATTTTTATACCC

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

ATCCTTTGCAATATTCGTTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC------TGCT----TT----TTTAAGA------------------------------------------------------------------------------------------------------TTTA-------------------------------------------------TCTGTCTTTC--AT------------------------------------------------------------------------------------------TT-------------------------------------------GTCCTTC--------------------------AAGA------------------------------CCTTTCCCTT-------------------------------------------------TTG----------CGGTTTCCCCCCTACATTGTTATACCC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dvi_603

scaffold_10322:325503-325653 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-35.5	-35.5	-35.4