ID:

dvi_5937

 Coordinate:

scaffold_12875:10280269-10280330 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\GJ20593-cds]; CDS [Dvir\GJ20593-cds]; exon [dvir_GLEANR_6020:1]; exon [dvir_GLEANR_6020:2]; intron [Dvir\GJ20593-in]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------##################################################
ACAATGTGAGTGCGCGACAGCTGTCTTGTTTGCAGTGCACTGATACGGAGGTGAGTAAGAAGACAAAAACGATCATCATAACAAACAGAAGCTCATGATGTTACTTTTGAAGGATGAACATTGCCGTACCGCTCCGGAGCAGCTAGCACCACAAGCCTGTGG
**************************************************.............(((((..((.((((((...............))))))))..)))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060665
9_females_carcasses_total
 V116
male body		 SRR060667
160_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060664
9_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060668
160x9_males_carcasses_total
 V053
head
 SRR1106730
embryo_16-30h
..........................................................................................................................................GCAGCTAGCACCACAAGCCTGT.. 22 0 1 4.00 4 3 1 0 0 0 0 0 0 0 0
...............................................................................................................GGATGAACATTGCCGTACCGCT............................. 22 0 1 4.00 4 2 0 0 1 1 0 0 0 0 0
......................GTCTTGTTTGCAGTGCACTGATACGGAG................................................................................................................ 28 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.....................................................................................................................ACATTGCCGTACCGCTCCGGAGC...................... 23 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.CAATGTGAGTGCGCGACAGCT............................................................................................................................................ 21 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0
..................................GTGCACTGATACGGAGGAT............................................................................................................. 19 2 2 2.00 4 2 0 0 1 1 0 0 0 0 0
..AATGTGAGTGCGCGACAGCTGT.......................................................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
ACAATGTGAGTGCGCGACAGCTGT.......................................................................................................................................... 24 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0
...................................................................................................................GAACATTGCCGTACCGCTC............................ 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
......................................................................................................................CATTGCCGTACCGCTCCGGA........................ 20 0 1 2.00 2 0 1 0 0 0 1 0 0 0 0
..............................TGCAGTGCACTGATACGGA................................................................................................................. 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...................................................................................................................GAACATTGCCGTACCGCTCCGG......................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................AGCTAGCACCACAAGCCTGT.. 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.CAATGTGAGTGCGCGACAGCTGT.......................................................................................................................................... 23 0 1 2.00 2 0 0 1 0 0 1 0 0 0 0
.......................................................................................................................ATTGCCGTACCGCTCCGGAGC...................... 21 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0
....TGTGAGTGCGCGACAGCTGT.......................................................................................................................................... 20 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
...................................................................................................................GAACATTGCCGTACCGCTCCGGAGC...................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................AGCTAGCACCACAAGCCTGTGG 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................CTTGTTTGCAGTGCACTGA....................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................GTTTGCAGTGCACTGATACGGA................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................GCAGCTAGCACCACAAGCCTGTG. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................CATTGCCGTACCGCTCCGGAGC...................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................GTTTGCAGTGCACTGATACGGAGGATG............................................................................................................ 27 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............GACAGCTGTCTTGTTTGCA................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................TCTTGTTTGCAGTGCACTGATA..................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............CGCGACAGCTGTCTTGTTTGCAGTG............................................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..AATGTGAGTGCGCGACAGCTGTCTT....................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................CGGAGCAGCTAGCACCACAAGCC..... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............GCGACAGCTGTCTTGTTTGCA................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................AACATTGCCGTACCGCTCC........................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................GGATGAACATTGCCGTAC................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................GATGAACATTGCCGTACCGCT............................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
ACAATGTGAGTGCGCGACAGCT............................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...........GCGCGACAGCTGTCTTGTTTGCAGTGC............................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..AATGTGAGTGCGCGACAGCTGTCT........................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...ATGTGAGTGCGCGACAGCTGT.......................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................GCAGTGCACTGATACGGAGGAT............................................................................................................. 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................CATTGCCGTACCGCTCCGGAGCAG.................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...ATGTGAGTGCGTGACAGCTGTCT........................................................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................GCTCCGGAGCAGCTAGCACC............ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................ATGCAGTGCACTGATACGGAGGAT............................................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................GTTTGCAGTGCACTGATACGGAGGATC............................................................................................................ 27 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................CTTGTTTGCAGTGCACTGATACGGA................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................GTACCGCTCCGGAGCAGCT.................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................GGATGAACATTGCCGTACC................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....GTGAGTGCGCGACAGCTGT.......................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...ATGTGAGTGCGCGACAGCTGTCTTGT..................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................AGCTAGCACCACAAGCCT.... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................AACATTGCCGTACCGCTCCGGA........................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................GAGCAGCTAGCACCACAAGCCTGT.. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................GCTAGCACCACAAGCCTGT.. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................GGAGCAGCTAGCACCACAAGCCTGT.. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
ACAATGTGAGTGCGCGACAGC............................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............GCGACAGCTGTCTTGTTTGC................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................GATGAACATTGCCGTACCGCTCCGGAGC...................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................GCTAGCACCACAAGCCTGTGG 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................GGAGGATGAACATTGCCGTACCGCTCC........................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................GTCTTGTTTGCAGTGCACTG........................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................ACCGCTCCGGAGCAGCTAGCACCA........... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................TGTTTGCAGTGCACTGATACG................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................TGCAGTGCACTGATACGGAGGAT............................................................................................................. 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................AACATTGCCGTACCGCTCCGGAGCA..................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.........GTGCGCGACAGCTGTCTTGTTTGCAGT.............................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..AATGTGAGTGCGCGACAGC............................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................TTTGCAGTGCACTGATACGGA................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................ATGAACATTGCCGTACCGCTCCGG......................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................GCTCCGGAGCAGCTAGCACCA........... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................GGAGGATGAACATTGCCGTACCG............................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................CCGGAGCAGCTAGCACCACAAGCCTGT.. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................TTGTTTGCAGTGCACTGAT...................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................GAGGATGAACATTGCCGTACCGCTCC........................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................AACATTGCCGTACCGCTCCGGAGCAG.................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
...............GACAGCTGTCTTGTTTGCAGTGTACT......................................................................................................................... 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
................ACAGCTGTCTTGTTTGCAGTGCACT......................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............GACAGCTGTCTTGTTTGCAGT.............................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................GCCGTACCGCTCCGGAGCA..................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................ACATTGCCGTACCGCTCCGGAGCAGCT.................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................GAACATTGCCGTACCGCTCCGGA........................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.CAATGTGAGTGCGCGACAGC............................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................GGAGCAGCTAGCACCACAAGCC..... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................ATTGCCGTACCGCTCCGGAGCAGCTAG................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....GTGAGTGCGCGACAGCTGTCTTGTTTGC................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................GCTCCGGAGCAGCTAGCACCAC.......... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................AGAACATTGCCGTACCGCTCCGGAGC...................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................TTGTTTGCAGTGCACTGATACGGAG................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................TGCCGTATCGCTCCGGAGC...................... 19 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................GCTCCGGAGCAGCTAGCACCACAAGCCT.... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.............GCGACAGCTGTCTTGTTTGCAGTG............................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................TGCAGTGTATTGATACGGA................................................................................................................. 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................GTGCACTGATACGGAGGA.............................................................................................................. 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............CGCGACAGCTGTCTTGTTTGCA................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................GAACATTGCCGTACCGCTCCGGAGCA..................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......TGAGTGCGCGACAGCTGTCTTGTT.................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................AGCAGCTAGCACCACAAGCCT.... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................GCTAGCACCACAAGCCTGTG. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................GAACATTGCCGTACCGCTCC........................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........GCGCGACAGCTGTCTTGTT.................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.................................AGTGCACTGATACGGAGGA.............................................................................................................. 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.CAATGTGAGTGCACGACAGCT............................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................GTCTTGTTTGCAGTGCACT......................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................TGCAGTGCACTGATACGG.................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................GCCGTACCGCTCCGGAGC...................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................GTCTTGTTTGCAGTGCACTGATACG................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................CGGAGCAGCTAGCACTACAAGCCTAT.. 26 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...........................GTTTGCAGTGCACTGATACGGAG................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................AGTGCACTGATACGGAGGATG............................................................................................................ 21 3 3 0.67 2 0 0 2 0 0 0 0 0 0 0
......TGGGTGCGCGCCAGCTATCT........................................................................................................................................ 20 3 2 0.50 1 0 0 0 0 0 0 0 0 1 0
...................................TGCACTGATACGGAGGAT............................................................................................................. 18 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..................................GTGCACTGATACGGAGGATG............................................................................................................ 20 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................ATTTTGAAGGATTAACATT........................................ 19 2 8 0.13 1 0 0 0 0 0 0 0 0 1 0
............CGGGACAGCGTTCTTGTTT................................................................................................................................... 19 3 12 0.08 1 0 0 0 0 0 0 0 0 1 0
.......................................................................ATCATGATAACAAAGAGGAG....................................................................... 20 3 16 0.06 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................CACCACGAGCCCGTGG 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TGTTACACTCACGCGCTGTCGACAGAACAAACGTCACGTGACTATGCCTCCACTCATTCTTCTGTTTTTGCTAGTAGTATTGTTTGTCTTCGAGTACTACAATGAAAACTTCCTACTTGTAACGGCATGGCGAGGCCTCGTCGATCGTGGTGTTCGGACACC
**************************************************.............(((((..((.((((((...............))))))))..)))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 GSM1528803
follicle cells		 M047
female body
 SRR060673
9_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060679
140x9_testes_total
................................................ACCACTCATTCTTCTTTT................................................................................................ 18 2 8 0.25 2 0 1 1 0 0 0
................................................................................................................................GGTGAGGCCTTGTTGATCG............... 19 3 7 0.14 1 1 0 0 0 0 0
......................................TGACCACGCGTCCACTCATT........................................................................................................ 20 3 9 0.11 1 0 0 0 1 0 0
.................................................................................................TACACTGAGAACTACCTACT............................................. 20 3 11 0.09 1 0 0 0 0 1 0
..............................................CCACCACTAATTCTTCTTTT................................................................................................ 20 3 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:10280219-10280380 - dvi_5937 ACAATGTGAGTGCGCGACAGCTGTCTTGTTTGCAGTGCACTGATACGGAGGTGAGTAAGAAG---ACAAA-----AAC------------G-----ATCA-TCATAACAAACA--GAA----------------GCTCAT-GAT---GTTACTTTTGAAGGATGAACATTGCCGTACCGCTCCGGAGCAGCTAGCACCACAAGCCTGTGG------
droMoj3 scaffold_6496:16720911-16721072 + ACAATATTAGCCCCCCTCAGCTGTCCTGTGTGCAGTGTAAGGATACGCAGGTAAGCAAAGAG---CCAAG-----------------------A--GTTA-TTCAGTA-------TAAGCCTTAA---------GCTAAAGAGA---ATTTGTCTTCAAGGATGAACAATGTCGAACTGCTCCAGAGCAGCTGGCGGCACAAACCTGTGG------
droGri2 scaffold_15245:3426961-3427122 - ACAATGTCAGTTCCAGTCAGCTATCCTGTTTGCAGTGTCAGGACATACAGGTGAGTAAGAAA---CTAAA-----GTAGTTCAA---------C--AGC------AGAAA-------------------CTATAACTAATGC-A---TTGTCAATTGAAGGATGATCGTTGCCGTACTGCACCGGAGCAGCTGGTGCCTCAATCCTGTGG------
droWil2 scf2_1100000004514:3006054-3006217 - ATAATAAAAGC------CTAGTATCATGTGTCCAGTGTGTGGATAGTGAGGTGATAAACATA---CACAGAAAATTAA-----------------------ATTCTTTGCTTA--TGC-------AAAACTAATAATAA--AAA---TTCTTGTATTTAGGATGTAAATTGCCGCTCAAATCCTGAAAGTCTGACAGCCAAATCATGTGC------
dp5 3:15275168-15275330 - ACACTCTAGGATCTGCGAGATCCGGTTGTCTCCAGTGTGCGGAAAGTGGGGTGAATATTGTGAATAATGG-----AA------------AG-----ATTG-CTTCATTTATTA--TAACCAT-------------------TTG---ATATTTCCTACAGGATGAGCACTGTGTGGATGCCCCTCAGCTTCTAGTATCTCAAAGATGTCC------
droPer2 scaffold_4:3776211-3776373 + ACACTCTGGGATCTGCGAGAGCCGGTTGTCTCCAGTGTGCGGAAAGTGGGGTGAATTTTGTGAATAACGG-----AA------------AG-----ATTG-CTTCATTTATTA--TAACCAT-------------------TTG---ATATTTCCTACAGGACGAGCACTGTGTGGATGCCCCTCAGCTTCTAGTATCTCAAAGATGTCC------
droAna3 scaffold_13266:11097265-11097420 - ACAGAGTGGGATCCAAACACGCAGGGTGCCTCCAGTGCAACAGTGACCAGGTAGGCTTTTGA---AGATC-----AA----------------G--ATAA-AAAAATTATTA-AA------------------------TTT--ATTTCCAATTTCTAAGGACGCCCAATGTGCTGAAACACCAGAGGCTCTGAAAGCCGAACAATGTTC------
droBip1 scf7180000396547:1371114-1371269 + ACAACGTGGGATCCAAGCAGGCAGGATGTCTGCAGTGTAACAGTGACCAGGTAGGCTTGCAA---AGCTC-----AA----------------A--ATTA-TTAAAATACTT-AA------------------------TTT--ATTTTCAATCTCTAAGGACACCCAATGTACTGATCCATCTGAGACTCTACAAGCCGAACAATGCTC------
droKik1 scf7180000302366:234942-235098 + ACAATGTGGGCTCCAAGCGAGCCGGCTGTCTTCAGTGTAATAGTACAGAGGTAAATGTAATA---TAAAT-------------------------------------ATTTTT--AAA-------TACTTTTCAAATAA--T--ATATGCTTTCCCAAAGGACTCCCAATGTGCTGAAGCTCCGGGACTTCTGCAAGCCCAAGTTTGTTC------
droFic1 scf7180000453858:128663-128815 - ATAATTTGGGATCTAAACTAGCTAGCTGTCTTCAGTGCAACAATACCGTAGTGAGTATATAA---AAACC-----CT--------------TAA--ATTA-C---ACATGTT---AAA-----------------------TAC---TTATTTCTTAAAGGACTCCGAGTGTGCCGAATCTCCTGGTCTTCTAAAAGCTGTACAATGTCC------
droEle1 scf7180000488240:1146-1292 - ACAATGTGGGATCCAAAAAAGGTAGCTGTCTTCAGTGTAATAATACAGAGGTAAGTATAAGA---AATAA-----A--------------------CTTA-TCGTAAATTTT-AT------------------------TTT--ATCTATTTTCTTAAAGGACGCACAGTGTGCTGAATCCCCTGAACTTCTGAATGCT-------GTGA------
droRho1 scf7180000758756:766-936 - ACACTGTGGCGTCCAAAAGAGCAAGCTGTCATCAGTGTAATAGTACTGAGGTAATAATTAAA---AACAA-----AAA---------------TATTTTA-CCCTA---------TTG-------TACTCTTTAAATA---A--ATATTTTTTCTTTAAGGACGCACAGTGCATGGAAACTCCAGAACTTTTGAAGGCTGTACAATGTCCCATTGC
droBia1 scf7180000301754:4820134-4820289 - ACAATGTGGCGCCAAAAACCTACAGCTGTCTTCAGTGTAATAACACCGAGGTAAATAAAAGA---GTTAT-----AAT--------------A---ATAT-CCCTAAAATGTA--AAA-----------------------TAT---ATTTTTCTTCAAGGACACTCAGTGTGCTGAATCTCCAGACCTCCTAAAGGCAGTACAATGTCC------
droTak1 scf7180000415681:292872-293030 - ACAATGTGGCGCCCAAAATAGCCAGTTGTCTTCAGTGTAATAATACAGAGGTAATTATTATGGAAATAAA-----TA----------------A--ATTA-AATAAATATTT-AT------------------------TAT--ATTATTTTGCTTTAAGGACACACAGTGTGCTGAATCTCCCGAACTCCTGAAAGCTGTACAATGTCC------
droEug1 scf7180000409672:7547905-7548049 - ATAATGTGGGCTCCAAAAGAGCCAGCTGTCTACAATGTAACAATACAGAGGTAGGCATTAGA---AAAAT-----TAA--------------A---CTT--TCCAACATTTAA--AA------------------------T-G---ATTT-TTCCTCAGGATTCACAGTGTGCTGAATCTGCTGGACTCCTGAAAGCT-------GTAC------
dm3 chr2R:17720550-17720720 - ACAACGTCGCAGCCAAAAGGACTAGCTGTATTCAGTGCAACAATACAGAGGTAACTAATAGT---TAGTA-----ACTATAAAATGGAGAAAAAGTCTTAAT---TTTTTTTT--CTA-----------------------TAC---TCTTCTTCTTCAGGACGCACAGTGTGCTGAATCTCCCGGGCTACTAACGGCTGTACAATGTCC------
droSim2 2r:18258952-18259102 - ACAACGTTGCATCCAAAAGGGCTAGTTGTCTTCAGTGCAACAATACAGAGGTAACTATGGAA---AAGAG-----CAA---------------TGTCTTA-TTCGATTTATTA--AAA-----------------------AAC---TTTCCTTCTTCAGGACGCACAGTGCGCTGAATCTCCCGGGCTACTAAAGGCT-------GTAC------
droSec2 scaffold_9:1035637-1035785 - ACAACGTTGCATTCAAAAGGGCTAGTTGTCTTCAGTGCAACAATACAGAGGTAACTATAAGG---AGCAA-----AA-----------------GACTTA-TTCGATTTTTTA--AAA-----------------------AAC---TTTTCTTCTTCAGGACGCACAGTGTGCTGAATCTCCCGGGCTACTAAAGGCT-------GTAC------
droYak3 2R:11467109-11467264 + ACAATGTGGCATCCAAAAGGGCTAACTGTCTTCAGTGCAACAATACAGAGGTAACTATCACA---AGGAG-----CA--------------AAAGTCTTA-T---ATATTTTA--AAA-----------------------AAC---TTTCATCTTTCAGGACGCACAGTGTGCAGAATCTCCCGAGCTCCTGAAGGCGACACAATGTCC------
droEre2 scaffold_4845:11851875-11852030 - ACAATGTTGCATCCAAAAGGGCTAGCTGCCTTCAATGCAACAATACGGAGGTAACTATCAAA---AGAAG-----CA--------------AAAGTTTTA-C---ATTTGTTA--AAT-----------------------AAC---TTCCTTCTTTCAGGATGCACAGTGTGCTGAAACTCCCGAACTTCTAAAGGCGGTACAATGTCC------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ACAATGTGAGTGCGCGACAGCTGTCTTGTTTGCAGTGCACTGATACGGAGGTGAGTAAGAAG---ACAAA-----AAC------------G-----ATCA-TCATAACAAACA--GAA----------------GCTCAT-GAT---GTTACTTTTGAAGGATGAACATTGCCGTACCGCTCCGGAGCAGCTAGCACCACAAGCCTGTGG------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................GCAGCTAGCACCACAAGCCTGT........2214.004003000000000000100000000000000000000000000000000000000000000000
...............................................................................................................................................................GGATGAACATTGCCGTACCGCT...................................2214.004002000000000000001000010000000000000000000000000000000000000000
......................GTCTTGTTTGCAGTGCACTGATACGGAG......................................................................................................................................................................2813.003003000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................ACATTGCCGTACCGCTCCGGAGC............................2313.003003000000000000000000000000000000000000000000000000000000000000
.CAATGTGAGTGCGCGACAGCT..................................................................................................................................................................................................2113.003002000000000000000000000000000000000000000000000000000000000010
..................................GTGCACTGATACGGAGGAT...................................................................................................................................................................1922.004002000000000000001000010000000000000000000000000000000000000000
..AATGTGAGTGCGCGACAGCTGT................................................................................................................................................................................................2212.002002000000000000000000000000000000000000000000000000000000000000
ACAATGTGAGTGCGCGACAGCTGT................................................................................................................................................................................................2412.002001000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................GAACATTGCCGTACCGCTC..................................1912.002002000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................CATTGCCGTACCGCTCCGGA..............................2012.002000000000000001100000000000000000000000000000000000000000000000
..............................TGCAGTGCACTGATACGGA.......................................................................................................................................................................1912.002002000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................GAACATTGCCGTACCGCTCCGG...............................2212.002002000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................AGCTAGCACCACAAGCCTGT........2012.002002000000000000000000000000000000000000000000000000000000000000
.CAATGTGAGTGCGCGACAGCTGT................................................................................................................................................................................................2312.002000000000000001000000000000000000000000000000000000000000000010
.......................................................................................................................................................................ATTGCCGTACCGCTCCGGAGC............................2112.002001000000000000001000000000000000000000000000000000000000000000
....TGTGAGTGCGCGACAGCTGT................................................................................................................................................................................................2012.002001000000000000100000000000000000000000000000000000000000000000
...................................................................................................................................................................GAACATTGCCGTACCGCTCCGGAGC............................2512.002002000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................AGCTAGCACCACAAGCCTGTGG------2211.001001000000000000000000000000000000000000000000000000000000000000
........................CTTGTTTGCAGTGCACTGA.............................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
...........................GTTTGCAGTGCACTGATACGGA.......................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................GCAGCTAGCACCACAAGCCTGTG.......2311.001000000000000000100000000000000000000000000000000000000000000000
......................................................................................................................................................................CATTGCCGTACCGCTCCGGAGC............................2211.001001000000000000000000000000000000000000000000000000000000000000
...........................GTTTGCAGTGCACTGATACGGAGGATG..................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
...............GACAGCTGTCTTGTTTGCA......................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.......................TCTTGTTTGCAGTGCACTGATA...........................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
............CGCGACAGCTGTCTTGTTTGCAGTG...................................................................................................................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
..AATGTGAGTGCGCGACAGCTGTCTT.............................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................CGGAGCAGCTAGCACCACAAGCC...........2311.001000000000000000100000000000000000000000000000000000000000000000
.............GCGACAGCTGTCTTGTTTGCA......................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................AACATTGCCGTACCGCTCC.................................1911.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................GGATGAACATTGCCGTAC.......................................1811.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................GATGAACATTGCCGTACCGCT...................................2111.001001000000000000000000000000000000000000000000000000000000000000
ACAATGTGAGTGCGCGACAGCT..................................................................................................................................................................................................2211.001000000000000000000000010000000000000000000000000000000000000000
...........GCGCGACAGCTGTCTTGTTTGCAGTGC..................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
..AATGTGAGTGCGCGACAGCTGTCT..............................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
...ATGTGAGTGCGCGACAGCTGT................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...............................GCAGTGCACTGATACGGAGGAT...................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................CATTGCCGTACCGCTCCGGAGCAG..........................2411.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................GCTCCGGAGCAGCTAGCACC..................2011.001001000000000000000000000000000000000000000000000000000000000000
...........................GTTTGCAGTGCACTGATACGGAGGATC..................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
........................CTTGTTTGCAGTGCACTGATACGGA.......................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................GTACCGCTCCGGAGCAGCT........................1911.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................GGATGAACATTGCCGTACC......................................1911.001001000000000000000000000000000000000000000000000000000000000000
.....GTGAGTGCGCGACAGCTGT................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...ATGTGAGTGCGCGACAGCTGTCTTGT...........................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................AGCTAGCACCACAAGCCT..........1811.001000000000000000100000000000000000000000000000000000000000000000
....................................................................................................................................................................AACATTGCCGTACCGCTCCGGA..............................2211.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................GAGCAGCTAGCACCACAAGCCTGT........2411.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................GCTAGCACCACAAGCCTGT........1911.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................GGAGCAGCTAGCACCACAAGCCTGT........2511.001001000000000000000000000000000000000000000000000000000000000000
ACAATGTGAGTGCGCGACAGC...................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.............GCGACAGCTGTCTTGTTTGC.......................................................................................................................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
................................................................................................................................................................GATGAACATTGCCGTACCGCTCCGGAGC............................2811.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................GCTAGCACCACAAGCCTGTGG------2111.001001000000000000000000000000000000000000000000000000000000000000
......................GTCTTGTTTGCAGTGCACTG..............................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................ACCGCTCCGGAGCAGCTAGCACCA.................2411.001000000000000000000000000000000000000000000000000000000000000010
..........................TGTTTGCAGTGCACTGATACG.........................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..............................TGCAGTGCACTGATACGGAGGAT...................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................AACATTGCCGTACCGCTCCGGAGCA...........................2511.001000000000000000000100000000000000000000000000000000000000000000
.........GTGCGCGACAGCTGTCTTGTTTGCAGT....................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
..AATGTGAGTGCGCGACAGC...................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
............................TTTGCAGTGCACTGATACGGA.......................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................ATGAACATTGCCGTACCGCTCCGG...............................2411.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................GCTCCGGAGCAGCTAGCACCA.................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................CCGGAGCAGCTAGCACCACAAGCCTGT........2711.001001000000000000000000000000000000000000000000000000000000000000
.........................TTGTTTGCAGTGCACTGAT............................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................AACATTGCCGTACCGCTCCGGAGCAG..........................2611.001000000000000000000000100000000000000000000000000000000000000000
................ACAGCTGTCTTGTTTGCAGTGCACT...............................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...............GACAGCTGTCTTGTTTGCAGT....................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
..........................................................................................................................................................................GCCGTACCGCTCCGGAGCA...........................1911.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................ACATTGCCGTACCGCTCCGGAGCAGCT........................2711.001000000000000000100000000000000000000000000000000000000000000000
...................................................................................................................................................................GAACATTGCCGTACCGCTCCGGA..............................2311.001001000000000000000000000000000000000000000000000000000000000000
.CAATGTGAGTGCGCGACAGC...................................................................................................................................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
.......................................................................................................................................................................................GGAGCAGCTAGCACCACAAGCC...........2211.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................ATTGCCGTACCGCTCCGGAGCAGCTAG......................2711.001001000000000000000000000000000000000000000000000000000000000000
.....GTGAGTGCGCGACAGCTGTCTTGTTTGC.......................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................GCTCCGGAGCAGCTAGCACCAC................2211.001000000000000001000000000000000000000000000000000000000000000000
.........................TTGTTTGCAGTGCACTGATACGGAG......................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................GCTCCGGAGCAGCTAGCACCACAAGCCT..........2811.001000000000000000001000000000000000000000000000000000000000000000
.............GCGACAGCTGTCTTGTTTGCAGTG...................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..................................GTGCACTGATACGGAGGA....................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
............CGCGACAGCTGTCTTGTTTGCA......................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................GAACATTGCCGTACCGCTCCGGAGCA...........................2611.001000000000000000100000000000000000000000000000000000000000000000
......TGAGTGCGCGACAGCTGTCTTGTT..........................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................AGCAGCTAGCACCACAAGCCT..........2111.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................GCTAGCACCACAAGCCTGTG.......2011.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................GAACATTGCCGTACCGCTCC.................................2011.001001000000000000000000000000000000000000000000000000000000000000
...........GCGCGACAGCTGTCTTGTT..........................................................................................................................................................................................1911.001000000000000000000000100000000000000000000000000000000000000000
.................................AGTGCACTGATACGGAGGA....................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
......................GTCTTGTTTGCAGTGCACT...............................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..............................TGCAGTGCACTGATACGG........................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................GCCGTACCGCTCCGGAGC............................1811.001001000000000000000000000000000000000000000000000000000000000000
......................GTCTTGTTTGCAGTGCACTGATACG.........................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...........................GTTTGCAGTGCACTGATACGGAG......................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.................................AGTGCACTGATACGGAGGATG..................................................................................................................................................................2130.672000000000000000000000000000000000000000000000000000000000000020
...................................TGCACTGATACGGAGGAT...................................................................................................................................................................1820.501001000000000000000000000000000000000000000000000000000000000000
..................................GTGCACTGATACGGAGGATG..................................................................................................................................................................2060.171000000000000000000000000000000000000000000000000000000000000010
droMoj3
ACAATATTAGCCCCCCTCAGCTGTCCTGTGTGCAGTGTAAGGATACGCAGGTAAGCAAAGAG---CCAAG-----------------------A--GTTA-TTCAGTA-------TAAGCCTTAA---------GCTAAAGAGA---ATTTGTCTTCAAGGATGAACAATGTCGAACTGCTCCAGAGCAGCTGGCGGCACAAACCTGTGG------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................GCAGTGTAAGGATACGCAGG.....................................................................................................................................................................2014.004400000
.....................................................................................................................................................................ACAATGTCGAACTGCTCCAGAGC............................2314.004300001
......................GTCCTGTGTGCAGTGTAAGG..............................................................................................................................................................................2013.003100002
...........................GTGTGCAGTGTAAGGATACGCAGG.....................................................................................................................................................................2413.003200001
......................................................................................................................................................................CAATGTCGAACTGCTCCAGAGC............................2212.002000002
...................................................................................................................................................................GAACAATGTCGAACTGCTCCAGAGC............................2512.002100001
..............................TGCAGTGTAAGGATACGCAGG.....................................................................................................................................................................2112.002100001
.................................................................................................................................................................ATGAACAATGTCGAACTGCTC..................................2111.001100000
...................................................................................................................................................................GAACAATGTCGAACTGCTCCAGA..............................2311.001000001
................................................................................................................................................................GATGAACAATGTCGAACTG.....................................1911.001100000
...............................GCAGTGTAAGGATACGCAGGA....................................................................................................................................................................2111.001100000
.................................................................................................................................................................ATGAACAATGTCGAACTGC....................................1911.001100000
...........................GTGTGCAGTGTAAGGATACGCAGGATG..................................................................................................................................................................2711.001000001
......................GTCCTGTGTGCAGTGTAAG...............................................................................................................................................................................1911.001100000
.........................................................................................................................................................................TGTCGAACTGCTCCAGAGC............................1911.001100000
.................................................................................................................................................................ATGAACAATGTCGAACTGCTCCAGAGC............................2711.001100000
.............................................................................................................................................................................................GCTGGCGGCACAAACCTGT........1911.001100000
..........................TGTGTGCAGTGTAAGGATA...........................................................................................................................................................................1911.001000001
............CCCCTCAGCTGTCCTGTGTGCA......................................................................................................................................................................................2211.001100000
...ATATTAGCCCCCCTCAGC...................................................................................................................................................................................................1811.001100000
...............................GCAGTGTAAGGATACGCAG......................................................................................................................................................................1911.001100000
.............................................................................................................................................................................GAACTGCTCCAGAGCAGCTGGCGG...................2411.001100000
......................................................................................................................................................................................CAGAGCAGCTGGCGGCACAAACCTGT........2611.001100000
............................................................................................................................................................................................AGCTGGCGGCACAAACCTGTG.......2111.001100000
ACAATATTAGCCCCCCTCAGCT..................................................................................................................................................................................................2211.001100000
...............CTCAGCTGTCCTGTGTGCA......................................................................................................................................................................................1911.001100000
................................................................................................................................................................GATGAACAATGTCGAACTGCTCCAGAGC............................2811.001000001
..........................................................................................................................................................................GTCGAACTGCTCCAGAGCAGCTG.......................2311.001100000
..............................................................................................................................................................................................CTGGCGGCACAAACCTGT........1811.001100000
...........................GTGTGCAGTGTAAGGATACGCAG......................................................................................................................................................................2311.001000001
....................................................................................................................................................................................TCCAGAGCAGCTGGCGGCACAAACCTGT........2811.001100000
.............................GTGCAGTGTAAGGATACGCA.......................................................................................................................................................................2011.001000001
........................CCTGTGTGCAGTGTAAGG..............................................................................................................................................................................1811.001100000
.............CCCTCAGCTGTCCTGTGTGC.......................................................................................................................................................................................2011.001100000
..........................................................................................................................................................................GTCGAACTGCTCCAGAGCAGCTGGC.....................2511.001100000
..........................................................................................................................................................................GTCGAACTGCTCCAGAGCAGC.........................2111.001100000
.................................AGTGTAAGGATACGCAGGAT...................................................................................................................................................................2011.001100000
..................................................................................................................................................................................GCTCCAGAGCAGCTGGCGGC..................2011.001100000
............................................................................................................................................................................CGAACTGCTCCAGAGCAGCTGGCGGCA.................2711.001100000
...........................GTGTGCAGTGTAAGGATACGC........................................................................................................................................................................2111.001100000
droGri2
ACAATGTCAGTTCCAGTCAGCTATCCTGTTTGCAGTGTCAGGACATACAGGTGAGTAAGAAA---CTAAA-----GTAGTTCAA---------C--AGC------AGAAA-------------------CTATAACTAATGC-A---TTGTCAATTGAAGGATGATCGTTGCCGTACTGCACCGGAGCAGCTGGTGCCTCAATCCTGTGG------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................................................................................................................................................................................CAGCTGGTGCCTCAATCCTGT........2111.00110
droWil2
ATAATAAAAGC------CTAGTATCATGTGTCCAGTGTGTGGATAGTGAGGTGATAAACATA---CACAGAAAATTAA-----------------------ATTCTTTGCTTA--TGC-------AAAACTAATAATAA--AAA---TTCTTGTATTTAGGATGTAAATTGCCGCTCAAATCCTGAAAGTCTGACAGCCAAATCATGTGC------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................GTCCAGTGTGTGGATAGTGAGG.....................................................................................................................................................................2215.00500500
.............................GTCCAGTGTGTGGATAGTGAGGAT...................................................................................................................................................................2415.00500500
.............................GTCCAGTGTGTGGATAGTGAGGATG..................................................................................................................................................................2513.00300300
................................CAGTGTGTGGATAGTGAGGAT...................................................................................................................................................................2112.00200200
.............................GTCCAGTGTGTGGATAGTGA.......................................................................................................................................................................2012.00200200
.........................ATGTGTCCAGTGTGTGGATAGTGAGGAT...................................................................................................................................................................2812.00200200
...............................CCAGTGTGTGGATAGTGAGGAT...................................................................................................................................................................2212.00200110
.................CTAGTATCATGTGTCCAGTGTGTGG..............................................................................................................................................................................2511.00100100
..........................................................................................................................................................................GCCGCTCAAATCCTGAAAGTCTGACAGC..................2811.00110000
...................................................................................................................................................................GTAAATTGCCGCTCAAATCCT................................2111.00101000
....................GTATCATGTGTCCAGTGTGTGGATAGT.........................................................................................................................................................................2711.00101000
........................CATGTGTCCAGTGTGTGGATA...........................................................................................................................................................................2111.00100100
...ATAAAAGC------CTAGTATCATGTGT.........................................................................................................................................................................................2211.00100100
.............................................................................................................................................................................................TCTGACAGCCAAATCATGTG.......2011.00101000
......................ATCATGTGTCCAGTGTGTGGATAGTGA.......................................................................................................................................................................2711.00100100
......................ATCATGTGTCCAGTGTGTGGATA...........................................................................................................................................................................2311.00100100
...............................CCAGTGTGTGGATAGTGAG......................................................................................................................................................................1911.00100100
......................ATCATGTGTCCAGTGTGTGGATAGT.........................................................................................................................................................................2511.00100100
..................................GTGTGTGGATAGTGAGGA....................................................................................................................................................................1811.00100100
...........................GTGTCCAGTGTGTGGATAGTGAGGAT...................................................................................................................................................................2611.00100100
.................................AGTGTGTGGATAGTGAGGAT...................................................................................................................................................................2041.00400400
..................................................................................................................................................................................AATCCTGAAAGTCTGACA....................1811.00110000
......................................................................................................................................................................................CTGAAAGTCTGACAGCCAAAT.............2111.00100100
................................................................................................................................................................................CAAATCCTGAAAGTCTGACA....................2011.00110000
......................................................................................................................................................................AATTGCCGCTCAAATCCTGAAAGTCTGAC.....................2911.00110000
.........GC------CTAGTATCATGTGTCCAGTGTGTG...............................................................................................................................................................................2611.00100100
.............................GTCCAGTGTGTGGATAGTGAG......................................................................................................................................................................2111.00100100
....TAAAAGC------CTAGTATCATGTGT.........................................................................................................................................................................................2111.00100100
......................ATCATGTGTCCAGTGTGTGG..............................................................................................................................................................................2011.00100010
.....................................................................................................................................................................................CCTGAAAGTCTGACAGCCAAAT.............2211.00100100
............................TGTCCAGTGTGTGGATAGTGAGGAT...................................................................................................................................................................2511.00100100
.....................................................................................................................................................................AAATTGCCGCTCAAATCCTGAAAGTCT........................2711.00100100
.........GC------CTAGTATCATGTGTCCAGTGTGT................................................................................................................................................................................2511.00100100
...........................GTGTCCAGTGTGTGGATAGTGAGGA....................................................................................................................................................................2511.00100100
................................................................................................................................................................................CAAATCCTGAAAGTCTGACAGC..................2211.00101000
....................GTATCATGTGTCCAGTGTGTG...............................................................................................................................................................................2111.00100100
.................................AGTGTGTGGATAGTGAGG.....................................................................................................................................................................1811.00100100
..................................GTGTGTGGATAGTGAGGAT...................................................................................................................................................................1960.33200200
dp5
ACACTCTAGGATCTGCGAGATCCGGTTGTCTCCAGTGTGCGGAAAGTGGGGTGAATATTGTGAATAATGG-----AA------------AG-----ATTG-CTTCATTTATTA--TAACCAT-------------------TTG---ATATTTCCTACAGGATGAGCACTGTGTGGATGCCCCTCAGCTTCTAGTATCTCAAAGATGTCC------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........ATCTGCGAGATCCGGTTGT...........................................................................................................................................................................................1912.0020200000000
.........................................................................................................................................................................TGTGTGGATGCCCCTCAGCTT..........................2111.0010100000000
.............................CTCCAGTGTGCGGAAAGTGGGG.....................................................................................................................................................................2211.0010100000000
.....................CCGGTTGTCTCCAGTGTGCGG..............................................................................................................................................................................2111.0010000001000
...........................GTCTCCAGTGTGCGGAAAGTGGG......................................................................................................................................................................2311.0010100000000
...........................GTCTCCAGTGTGCGGAAAGTGGGGA....................................................................................................................................................................2511.0010000001000
............................................................................................................................................................................GTGGATGCCCCTCAGCTT..........................1811.0010100000000
..........................................................................................................................................................................GTGTGGATGCCCCTCAGCT...........................1911.0010100000000
droPer2
ACACTCTGGGATCTGCGAGAGCCGGTTGTCTCCAGTGTGCGGAAAGTGGGGTGAATTTTGTGAATAACGG-----AA------------AG-----ATTG-CTTCATTTATTA--TAACCAT-------------------TTG---ATATTTCCTACAGGACGAGCACTGTGTGGATGCCCCTCAGCTTCTAGTATCTCAAAGATGTCC------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........GATCTGCGAGAGCCGGTTGTCTCCA......................................................................................................................................................................................2511.001010000
..............................TCCAGTGTGCGGAAAGTGGG......................................................................................................................................................................2011.001000001
..................................................................................................................................................................CGAGCACTGTGTGGATGCCCCTCAGCTT..........................2811.001000001
ACACTCTGGGATCTGCGAGAGC..................................................................................................................................................................................................2211.001010000
.............................CTCCAGTGTGCGGAAAGTGGG......................................................................................................................................................................2111.001010000
droAna3
ACAGAGTGGGATCCAAACACGCAGGGTGCCTCCAGTGCAACAGTGACCAGGTAGGCTTTTGA---AGATC-----AA----------------G--ATAA-AAAAATTATTA-AA------------------------TTT--ATTTCCAATTTCTAAGGACGCCCAATGTGCTGAAACACCAGAGGCTCTGAAAGCCGAACAATGTTC------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................CACGCAGGGTGCCTCCAGT....................................................................................................................................................................................1912.002200000
..............................................................................................................................................................................................CTGAAAGCCGAACAATGTT.......1911.001000001
....AGTGGGATCCAAACACGCAGGGTG............................................................................................................................................................................................2411.001100000
...................................................................................................................................................................GCCCAATGTGCTGAAACACCAGAGGCT..........................2711.001100000
.................CACGCAGGGTGCCTCCAGTGCAA................................................................................................................................................................................2311.001100000
......................................................................................................................................................................CAATGTGCTGAAACACCAGAGGCT..........................2411.001000010
..............................................................................................................................................................................TGAAACACCAGAGGCTCTGAAAGCCG................2611.001000010
.............CAAACACGCAGGGTGCCTCCA......................................................................................................................................................................................2111.001100000
............CCAAACACGCAGGGTGCCTCCA......................................................................................................................................................................................2211.001100000
................................................................................................................................................................................AAACACCAGAGGCTCTGAAAGA..................2220.501100000
..................................GTGCAACAGTGACCAGGAC...................................................................................................................................................................1940.251100000
droBip1
ACAACGTGGGATCCAAGCAGGCAGGATGTCTGCAGTGTAACAGTGACCAGGTAGGCTTGCAA---AGCTC-----AA----------------A--ATTA-TTAAAATACTT-AA------------------------TTT--ATTTTCAATCTCTAAGGACACCCAATGTACTGATCCATCTGAGACTCTACAAGCCGAACAATGCTC------SizeHit CountTotal NormTotal
No Reads
droKik1
ACAATGTGGGCTCCAAGCGAGCCGGCTGTCTTCAGTGTAATAGTACAGAGGTAAATGTAATA---TAAAT-------------------------------------ATTTTT--AAA-------TACTTTTCAAATAA--T--ATATGCTTTCCCAAAGGACTCCCAATGTGCTGAAGCTCCGGGACTTCTGCAAGCCCAAGTTTGTTC------SizeHit CountTotal NormTotal
No Reads
droFic1
ATAATTTGGGATCTAAACTAGCTAGCTGTCTTCAGTGCAACAATACCGTAGTGAGTATATAA---AAACC-----CT--------------TAA--ATTA-C---ACATGTT---AAA-----------------------TAC---TTATTTCTTAAAGGACTCCGAGTGTGCCGAATCTCCTGGTCTTCTAAAAGCTGTACAATGTCC------SizeHit CountTotal NormTotal
No Reads
droEle1
ACAATGTGGGATCCAAAAAAGGTAGCTGTCTTCAGTGTAATAATACAGAGGTAAGTATAAGA---AATAA-----A--------------------CTTA-TCGTAAATTTT-AT------------------------TTT--ATCTATTTTCTTAAAGGACGCACAGTGTGCTGAATCCCCTGAACTTCTGAATGCT-------GTGA------SizeHit CountTotal NormTotal
No Reads
droRho1
ACACTGTGGCGTCCAAAAGAGCAAGCTGTCATCAGTGTAATAGTACTGAGGTAATAATTAAA---AACAA-----AAA---------------TATTTTA-CCCTA---------TTG-------TACTCTTTAAATA---A--ATATTTTTTCTTTAAGGACGCACAGTGCATGGAAACTCCAGAACTTTTGAAGGCTGTACAATGTCCCATTGCSizeHit CountTotal NormTotal
No Reads
droBia1
ACAATGTGGCGCCAAAAACCTACAGCTGTCTTCAGTGTAATAACACCGAGGTAAATAAAAGA---GTTAT-----AAT--------------A---ATAT-CCCTAAAATGTA--AAA-----------------------TAT---ATTTTTCTTCAAGGACACTCAGTGTGCTGAATCTCCAGACCTCCTAAAGGCAGTACAATGTCC------SizeHit CountTotal NormTotal
No Reads
droTak1
ACAATGTGGCGCCCAAAATAGCCAGTTGTCTTCAGTGTAATAATACAGAGGTAATTATTATGGAAATAAA-----TA----------------A--ATTA-AATAAATATTT-AT------------------------TAT--ATTATTTTGCTTTAAGGACACACAGTGTGCTGAATCTCCCGAACTCCTGAAAGCTGTACAATGTCC------SizeHit CountTotal NormTotal
No Reads
droEug1
ATAATGTGGGCTCCAAAAGAGCCAGCTGTCTACAATGTAACAATACAGAGGTAGGCATTAGA---AAAAT-----TAA--------------A---CTT--TCCAACATTTAA--AA------------------------T-G---ATTT-TTCCTCAGGATTCACAGTGTGCTGAATCTGCTGGACTCCTGAAAGCT-------GTAC------SizeHit CountTotal NormTotal
No Reads
dm3
ACAACGTCGCAGCCAAAAGGACTAGCTGTATTCAGTGCAACAATACAGAGGTAACTAATAGT---TAGTA-----ACTATAAAATGGAGAAAAAGTCTTAAT---TTTTTTTT--CTA-----------------------TAC---TCTTCTTCTTCAGGACGCACAGTGTGCTGAATCTCCCGGGCTACTAACGGCTGTACAATGTCC------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........AGCCAAAAGGACTAGCTGT...........................................................................................................................................................................................1915.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000100000000
..................................GTGCAACAATACAGAGGTCG..................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................CACAGTGTGCTGAATCTCCCGGGC............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..........................................................................................................TTTTTTT--CTA-----------------------TAC---TCTTC................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................GCACAGTGTGCTGAATCT...................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................ATTCAGTGCAACAATACAGAGGAC...................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...................................................................................................................................................................................CTCCCGGGCTACTAACGGCT.................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................ATTCAGTGCAACAATACAGAG......................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................ATTCAGTGCAACAATACAGA.......................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................GCACAGTGTGCTGAATCTCCCGGG.............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GCCAAAAGGACTAGCTGTA..........................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...........GCCAAAAGGACTAGCTGT...........................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.................................AGTGCAACAATACAGAGGACG..................................................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.....................................................................................................................................................TTCTTCTTCAGGACGCCG.................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ACAACGTTGCATCCAAAAGGGCTAGTTGTCTTCAGTGCAACAATACAGAGGTAACTATGGAA---AAGAG-----CAA---------------TGTCTTA-TTCGATTTATTA--AAA-----------------------AAC---TTTCCTTCTTCAGGACGCACAGTGCGCTGAATCTCCCGGGCTACTAAAGGCT-------GTAC------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................CAGTGCAACAATACAGAGGAC...................................................................................................................................................................2112.00202000000000000000
......................................................................................................................................................................CAGTGCGCTGAATCTCCCGGG.............................2111.00101000000000000000
..................................GTGCAACAATACAGAGGAC...................................................................................................................................................................1911.00101000000000000000
...............AAAGGGCTAGTTGTCTTCAGTG...................................................................................................................................................................................2211.00100010000000000000
...............................................................................................................................................................................GAATCTCCCGGGCTACTAAAGGCT-------..........2411.00100010000000000000
........................GTTGTCTTCAGTGCAACAATACAGAGGAC...................................................................................................................................................................2911.00101000000000000000
ACAACGTTGCATCCAAAAGGGCTA................................................................................................................................................................................................2411.00100010000000000000
droSec2
ACAACGTTGCATTCAAAAGGGCTAGTTGTCTTCAGTGCAACAATACAGAGGTAACTATAAGG---AGCAA-----AA-----------------GACTTA-TTCGATTTTTTA--AAA-----------------------AAC---TTTTCTTCTTCAGGACGCACAGTGTGCTGAATCTCCCGGGCTACTAAAGGCT-------GTAC------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................AGGACGCACAGTGTGCTGAAT.....................................2112.0020200
........................................................................................................................................................................GTGTGCTGAATCTCCCGGGCT...........................2111.0010100
..........ATTCAAAAGGGCTAGTTGA...........................................................................................................................................................................................1911.0010100
.........CATTCAAAAGGGCTAGTTGT...........................................................................................................................................................................................2011.0010100
................AAGGGCTAGTTGTCTTCAGTGC..................................................................................................................................................................................2211.0010100
............TCAAAAGGGCTAGTTGTCTTCAGTG...................................................................................................................................................................................2511.0010100
........GCATTCAAAAGGGCTAGTTGT...........................................................................................................................................................................................2111.0010100
..................................GTGCAACAATACAGAGGAC...................................................................................................................................................................1920.5010100
..................................GTGCAACAATACAGAGGACG..................................................................................................................................................................2050.2010100
droYak3
ACAATGTGGCATCCAAAAGGGCTAACTGTCTTCAGTGCAACAATACAGAGGTAACTATCACA---AGGAG-----CA--------------AAAGTCTTA-T---ATATTTTA--AAA-----------------------AAC---TTTCATCTTTCAGGACGCACAGTGTGCAGAATCTCCCGAGCTCCTGAAGGCGACACAATGTCC------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................CAGTGCAACAATACAGAGGAC...................................................................................................................................................................2117.00760000010000
.............CAAAAGGGCTAACTGTCTTCAGT....................................................................................................................................................................................2314.00410000030000
..............AAAAGGGCTAACTGTCTTCAGT....................................................................................................................................................................................2214.00400000040000
.................................................................................................................................................................................ATCTCCCGAGCTCCTGAAGGC..................2114.00400000040000
..............AAAAGGGCTAACTGTCTTCAGTGC..................................................................................................................................................................................2413.00300000030000
.................................AGTGCAACAATACAGAGGAC...................................................................................................................................................................2013.00320000010000
...................................................................................................................................................................................CTCCCGAGCTCCTGAAGGC..................1913.00300000120000
.................AGGGCTAACTGTCTTCAGTG...................................................................................................................................................................................2012.00200000020000
..........................................................................................................................................................................GTGCAGAATCTCCCGAGCTCCT........................2212.00200000020000
...................................................................................................................................................................GCACAGTGTGCAGAATCTCCCGAGCT...........................2612.00200000020000
.CAATGTGGCATCCAAAAGGG...................................................................................................................................................................................................2012.00200000020000
..........ATCCAAAAGGGCTAACTGTCTTCAGTGC..................................................................................................................................................................................2812.00200000020000
..............................................................................................................................................................................AGAATCTCCCGAGCTCCTGAAGGC..................2412.00200000020000
..........ATCCAAAAGGGCTAACTGTCTTCAGTGCA.................................................................................................................................................................................2912.00200000020000
.........CATCCAAAAGGGCTAACTGTCTTCAGTG...................................................................................................................................................................................2812.00200000020000
............CCAAAAGGGCTAACTGTCTTCAGT....................................................................................................................................................................................2412.00200000020000
..............................TTCAGTGCAACAATACAGAGGAC...................................................................................................................................................................2312.00220000000000
.............................................................................................................................................................................CAGAATCTCCCGAGCTCCTGAAG....................2311.00100000010000
..........................................................................................................................................................................................GCTCCTGAAGGCGACACAAT..........2011.00100000010000
.................................................................................................................................................................................ATCTCCCGAGCTCCTGAAG....................1911.00100000010000
........................................................................................................................................................................GTGTGCAGAATCTCCCGAG.............................1911.00110000000000
..AATGTGGCATCCAAAAGGGCTA................................................................................................................................................................................................2211.00101000000000
................AAGGGCTAACTGTCTTCAGTGCAAC...............................................................................................................................................................................2511.00100000010000
............CCAAAAGGGCTAACTGTCTTC.......................................................................................................................................................................................2111.00100000010000
.............................CTTCAGTGCAACAATACAGA.......................................................................................................................................................................2011.00100000010000
..........ATCCAAAAGGGCTAACTGTCTTCAGTG...................................................................................................................................................................................2711.00100000010000
...................................................................................................................................................................................CTCCCGAGCTCCTGAAGGCGACACAAT..........2711.00100000010000
.............CAAAAGGGCTAACTGTCTTCAG.....................................................................................................................................................................................2211.00100000010000
........................................................................................................................................................................GTGTGCAGAATCTCCCGAGCTC..........................2211.00100000010000
...ATGTGGCATCCAAAAGGGC..................................................................................................................................................................................................1911.00100000010000
..................................................................................................................................................................CGCACAGTGTGCAGAATCTCCCGAGCTCCT........................3011.00100000010000
..........................................................................................................................................................................GTGCAGAATCTCCCGAGCTCCTGA......................2411.00100000010000
............................................................................................................................................................................GCAGAATCTCCCGAGCTCCTGAAGGC..................2611.00100000010000
..........ATCCAAAAGGGCTAACTGT...........................................................................................................................................................................................1911.00100000010000
.........................................................................................................................................................................TGTGCAGAATCTCCCGAGCTCCTGAA.....................2611.00100000010000
............CCAAAAGGGCTAACTGTCTTCA......................................................................................................................................................................................2211.00100000010000
..........ATCCAAAAGGGCTAACTGTCTTCA......................................................................................................................................................................................2411.00100000010000
..........................................................................................................................................................................GTGCAGAATCTCCCGAGCTCCTGAAGG...................2711.00100000010000
....................................................................................................................................................................CACAGTGTGCAGAATCTCCCGAGCTCCT........................2811.00100000010000
.............................................................................................................................................................................................CCTGAAGGCGACACAATGTC.......2011.00100000010000
............CCAAAAGGGCTAACTGTCTTCAGTGCAACA..............................................................................................................................................................................3011.00100000010000
......................TAACTGTCTTCAGTGCAACAATACAGAG......................................................................................................................................................................2811.00100000010000
..........ATCCAAAAGGGCTAACTGTCTTCAGT....................................................................................................................................................................................2611.00100000010000
...................................................................................................................................................................................CTCCCGAGCTCCTGAAGGCGACACA............2511.00100000010000
..AATGTGGCATCCAAAAGGGC..................................................................................................................................................................................................2011.00100000010000
..AATGTGGCATCCAAAAGGG...................................................................................................................................................................................................1911.00100000010000
..................................GTGCAACAATACAGAGGACG..................................................................................................................................................................20140.14200000020000
...................................TGCAACAATACAGAGGACG..................................................................................................................................................................19200.05100000010000
droEre2
ACAATGTTGCATCCAAAAGGGCTAGCTGCCTTCAATGCAACAATACGGAGGTAACTATCAAA---AGAAG-----CA--------------AAAGTTTTA-C---ATTTGTTA--AAT-----------------------AAC---TTCCTTCTTTCAGGATGCACAGTGTGCTGAAACTCCCGAACTTCTAAAGGCGGTACAATGTCC------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................TCAATGCAACAATACGGAGGATG..................................................................................................................................................................2313.0030000300
.............................................................................................................................................................................CTGAAACTCCCGAACTTCTAAAGGC..................2513.0031000110
.............................CTTCAATGCAACAATACGGAGGATG..................................................................................................................................................................2512.0021000100
..........ATCCAAAAGGGCTAGCTGC...........................................................................................................................................................................................1912.0021000010
..................................................................................................................................................................................ACTCCCGAACTTCTAAAGGC..................2011.0011000000
.........CATCCAAAAGGGCTAGCT.............................................................................................................................................................................................1811.0011000000
.............................CTTCAATGCAACAATACGGA.......................................................................................................................................................................2011.0010000100
.....................................................................................................................................................................ACAGTGTGCTGAAACTCCCGAAC............................2311.0011000000
..........................TGCCTTCAATGCAACAATACGG........................................................................................................................................................................2211.0011000000
.CAATGTTGCATCCAAAAGGGCTAGCTGC...........................................................................................................................................................................................2811.0010000100
.................................................GGTAACTATCAAA---AGAAG-----CA--------------AAAGT........................................................................................................................2511.0010000010
.........CATCCAAAAGGGCTAGCTGCCTT........................................................................................................................................................................................2311.0011000000
.............................CTTCAATGCAACAATACGGAGG.....................................................................................................................................................................2211.0010000100
................................CAATGCAACAATACGGAGGATG..................................................................................................................................................................2211.0010000010
.CAATGTTGCATCCAAAAGG....................................................................................................................................................................................................1911.0011000000
.................................................................................................................................................................................AACTCCCGAACTTCTAAAGGCGGTA..............2511.0011000000
....TGTTGCATCCAAAAGGGCT.................................................................................................................................................................................................1911.0010000100
....................................................................................................................................................................CACAGTGTGCTGAAACTCCCGA..............................2211.0010000010
..............................TTCAATGCAACAATACGGAGGA....................................................................................................................................................................2211.0010000100
ACAATGTTGCATCCAAAAGGGCTAGC..............................................................................................................................................................................................2611.0010000100
..............................................................................................................................................................................TGAAACTCCCGAACTTCTAAAGGC..................2411.0011000000
.............................CTTCAATGCAACAATACGGAGGC....................................................................................................................................................................2311.0010000010
.........CATCCAAAAGGGCTAGCTGC...........................................................................................................................................................................................2011.0011000000
..............................TTCAATGCAACAATACGGAGGATG..................................................................................................................................................................2411.0010000100
...........................................................................................................................................................................................CTTCTAAAGGCGGTACAAT..........1911.0011000000
.....................CTAGCTGCCTTCAATGCAACAATAC..........................................................................................................................................................................2511.0011000000
.................................................................................................................................................................................AACTCCCGAACTTCTAAAGGCG.................2211.0010000100
........GCATCCAAAAGGGCTAGCT.............................................................................................................................................................................................1911.0010000100
...................................................................................................................................................................GCACAGTGTGCTGAAACTCCCGA..............................2311.0011000000
.................................AATGCAACAATACGGAGGAT...................................................................................................................................................................2021.0020000200
..........................TGCCTTCAATGCAACAATAC..........................................................................................................................................................................2011.0011000000
..................................ATGCAACAATACGGAGGATG..................................................................................................................................................................2040.5020000200
.................................AATGCAACAATACGGAGGATG..................................................................................................................................................................2130.3310000100

Generated: 05/16/2015 at 11:36 PM