dvi_5934

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ACAATGCCACCAAGTGCGTCACCTGCACGGGCGATGACTGCAATGTCGAAGTAAGTGCATATCTGCAGATTACTATTAAATTATATATCCTTATTATATACAAAATTTGAATCATGTTATCTGGGTTACCTTTCAAACTGGCAGCTGCCCGATATTTGAAAAAAATGTGGATATATTCAAAACTGCTTGACTACTTAGAAATTCCACACAACCAATTCAAAGCAATTCAAATAGATCGAAAATTGATGCGT ************************************************.((((((.......((((.............((((((.......)))))).....(((((((.....((((((.(((...(((((((..(((....))).....)))))))..))).)))))).))))))).)))).....))))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	V116 male body	M061 embryo	V047 embryo	SRR060665 9_females_carcasses_total	M027 male body	SRR060679 140x9_testes_total	SRR060680 9xArg_testes_total	SRR060682 9x140_0-2h_embryos_total	V053 head	SRR1106729 mixed whole adult body	GSM1528803 follicle cells
..........CAAGTGCGTCACCTGCACGGGC...........................................................................................................................................................................................................................	22	0	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0	0
.............GTGCGTCACCTGCACGGGC...........................................................................................................................................................................................................................	19	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
..............................GCGATGACTGCAATGTCGAACTGC.....................................................................................................................................................................................................	24	3	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.......................TGCACGGGCGATGACTGCAATGTC............................................................................................................................................................................................................	24	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
.................GTCACCTGCACGGGCGATGACTGC..................................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.CAATGCCACCAAGTGCGTCACCTGC.................................................................................................................................................................................................................................	25	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
.......CACCAAGTGCGTCACCTGCACGGGC...........................................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..........................AGGGGCGATGACTGCAATGTC............................................................................................................................................................................................................	21	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
............................GGGCGATGACTGCAATGTCGAACTGC.....................................................................................................................................................................................................	26	3	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.........................CACGGGCGATGACTGCAATGTCGAAC........................................................................................................................................................................................................	26	1	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
......................CTGCACGGGCGATGACTGCAATGTC............................................................................................................................................................................................................	25	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
............AGTGCGTCACCTGCACGGGC...........................................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
................................GATGACTGCAATGTCGAACTG......................................................................................................................................................................................................	21	2	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0
.........CCAAGTGCGTCACCTGCACGG.............................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
............................GGGCGATGACTGCAATGTC............................................................................................................................................................................................................	19	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
........ACCAAGTGCGTCACCTGCACGGGCGATG.......................................................................................................................................................................................................................	28	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
................................GATGACTGCAATGTCGAACT.......................................................................................................................................................................................................	20	1	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
................................GATGACTGCAATGTCGAACTGC.....................................................................................................................................................................................................	22	3	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
........................GCACGGGCGATGACTGCAATGT.............................................................................................................................................................................................................	22	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................ATTTGAAAAAGATGTGGAAA..............................................................................	20	2	7	0.14	1	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................ATGGTATCTGGGTCACCT........................................................................................................................	18	2	8	0.13	1	0	0	0	0	0	0	0	0	0	1	0	0
..............................................................................................................................................................................CTTCAAAACTTCTTGACT...........................................................	18	2	15	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................TATATACAATGTTTGAATGAT........................................................................................................................................	21	3	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0
..............................................................................AATTATATACCCTTATTTT..........................................................................................................................................................	19	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1

TGTTACGGTGGTTCACGCAGTGGACGTGCCCGCTACTGACGTTACAGCTTCATTCACGTATAGACGTCTAATGATAATTTAATATATAGGAATAATATATGTTTTAAACTTAGTACAATAGACCCAATGGAAAGTTTGACCGTCGACGGGCTATAAACTTTTTTTACACCTATATAAGTTTTGACGAACTGATGAATCTTTAAGGTGTGTTGGTTAAGTTTCGTTAAGTTTATCTAGCTTTTAACTACGCA ************************************************.((((((.......((((.............((((((.......)))))).....(((((((.....((((((.(((...(((((((..(((....))).....)))))))..))).)))))).))))))).)))).....))))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V053 head	SRR060682 9x140_0-2h_embryos_total	V116 male body	SRR060669 160x9_females_carcasses_total	SRR060684 140x9_0-2h_embryos_total	SRR060659 Argentina_testes_total	SRR060660 Argentina_ovaries_total	SRR060686 Argx9_0-2h_embryos_total	SRR060672 9x160_females_carcasses_total
TGTTACGTTGGATCATGCAGT......................................................................................................................................................................................................................................	21	3	1	1.00	1	1	0	0	0	0	0	0	0	0
...................................................................................................................CAAGAGACGCAATGGAAA......................................................................................................................	18	2	9	0.67	6	0	3	0	0	0	1	1	1	0
.....CGGTGGTTTACGAAGGGGACGT................................................................................................................................................................................................................................	22	3	3	0.33	1	0	0	1	0	0	0	0	0	0
.................................................................................................................TAGAATAGACCCACTGGAAG......................................................................................................................	20	3	4	0.25	1	0	0	0	1	0	0	0	0	0
........................................................................................................................GACCCAATGGACAGTTAGAG...............................................................................................................	20	3	5	0.20	1	0	0	0	0	1	0	0	0	0
......................................................................ATGATAATTCGATGTATAGG.................................................................................................................................................................	20	3	20	0.05	1	0	0	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_12875:10275515-10275765 -	dvi_5934	ACAATGCCACCAAGTGCGTCACCTGCACGGGCGATGACTGCAATGTCGAAGTAAGTGCATA---TCTGC-----AGATTACT-------------------ATTAAATTATATATCCTTATTATATACAAAATTTGAATCATGTTATCTGGGTTACCTTTCAAACTGGCAGCTGCCCGATATTTGAAAAAAATGTGGATATATTCAAAACTGCTTGACTACTTAGAAATTCCACACAACCAATTCAAAGCAATTCAAATAGATCGAAAATTGATGCGT
droMoj3	scaffold_6496:16726069-16726126 +		GCAATGCCACCAAGTGCAGCACCTGCAATGGCGATGCCTGTAATGTTCAGGTAAGTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15245:3422390-3422445 -		TCAATGCCACCAAATGTGTGACTTGTTCGGGCGATAACTGCAATATTAAGGTGAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004514:3001410-3001465 -		GCAACTCTACAAAATGCTCTAGTTGCTCTGGTGACAACTGTAATAAGGAGGTAGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	3:15271138-15271196 -		GCAATGCCACGCAGTGCGCCAAGTGCTCCGGAGAGAACTGCAACCTGAAGGTGAATATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_4:3780324-3780382 +		GCAATGCCACGCAATGCGCCAAGTGCTCCGGAGAGAACTGCAACCTGAAGGTGAATATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13266:11093494-11093549 -		GCAACACCACCAAGTGTCTGAAGTGTTCCGGTGAGAGCTGCAACAGTGAGGTACGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396547:1375037-1375092 +		GCAACACCACCAAGTGCCTGAAGTGTACCGGTGCGAGCTGCAACAGTGAGGTACGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302366:246657-246715 +		ATGATGC---CAACTGTACTGTGTGCTCAACTGATGGCTGCAATCGCGAGGTAATTACCC-----------------------------------------AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000453858:124161-124253 -		GCAACTCCACCAAATGTGCGAGGTGCTCTGGAGAAACTTGCAATAAGGAGGTGGGTTTGTC---TTTAATTATTATA-------AAGCACCTCTAAATTGTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491211:59823-59913 -		GCAACAGCACCAAGTGCCTGAGGTGCACTGGGGCTAATTGCAACCAGCAGGTGGGCTTATG---TTTTAGTTTTATA------TGAATTA---ATTTATATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000768041:16390-16453 -		CCAACAGCACCAAGTGCTCCAGGTGCACTGGGGCTAAATGCAACCAGGAGGTGGGTTTATG---TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000301754:4815808-4815886 -		GCAATACCACCAAGTGCCTCAGGTGCTCAGGAGAAAACTGCAACCAGCAGGTCGGTTTGGTGTTTCTTC-----AGGCGACT-------------------AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000415681:288453-288495 -		CCAACTCCACAAAGTGCTTGCGGTGCTCAGGGGAGAATTGCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409672:7543638-7543737 -		GTAATACCACAAAGTGTCTCAGGTGCACAGGAGAGAAGTGCAACCAGGAGGTGGGTTTAAT---ATCTGACATTATTGGACCATAAGTTAACCATATTTATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3	chr2R:17716500-17716544 -		GCAATATCACCAAGTGCAGCAGATGCACAGGAGAGTTGTGCAACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	2r:18254909-18254964 -		GCAATAGCACCAAGTGCAGCAGATGCACAGGAGAGTTGTGCAACGAGCAGGTGGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_9:1031578-1031622 -		GCAATAGCACCAAGTGCAGCAGATGCACAGGAGAGTTGTGCAACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	2R:11471263-11471307 +		CCAATAGCACAAAGTGCCTCAGATGCACAGGAGAGTCGTGCAACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4845:11847802-11847846 -		GCAATAGTGCGCAGTGCCTCAGATGCACAGGAGAGATGTGCAACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

ACAATGCCACCAAGTGCGTCACCTGCACGGGCGATGACTGCAATGTCGAAGTAAGTGCATA---TCTGC-----AGATTACT-------------------ATTAAATTATATATCCTTATTATATACAAAATTTGAATCATGTTATCTGGGTTACCTTTCAAACTGGCAGCTGCCCGATATTTGAAAAAAATGTGGATATATTCAAAACTGCTTGACTACTTAGAAATTCCACACAACCAATTCAAAGCAATTCAAATAGATCGAAAATTGATGCGT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..........CAAGTGCGTCACCTGCACGGGC......................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............GTGCGTCACCTGCACGGGC......................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TGCACGGGCGATGACTGCAATGTC.......................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................GTCACCTGCACGGGCGATGACTGC.............................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CAATGCCACCAAGTGCGTCACCTGC............................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......CACCAAGTGCGTCACCTGCACGGGC......................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................CACGGGCGATGACTGCAATGTCGAAC...................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CTGCACGGGCGATGACTGCAATGTC.......................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............AGTGCGTCACCTGCACGGGC......................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CCAAGTGCGTCACCTGCACGG........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GGGCGATGACTGCAATGTC.......................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........ACCAAGTGCGTCACCTGCACGGGCGATG..................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
........................GCACGGGCGATGACTGCAATGT........................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GCAATGCCACCAAGTGCAGCACCTGCAATGGCGATGCCTGTAATGTTCAGGTAAGTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............AGTGCAGCACCTGCAATGGC......................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
........................GCAATGGCGATGCCTGTAAT..........................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..............TGCAGCACCTGCAATGGC......................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0

droGri2

TCAATGCCACCAAATGTGTGACTTGTTCGGGCGATAACTGCAATATTAAGGTGAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...........AAATGTGTGACTTGTTCGG........................................................................................................................................................................................................................................................	19	1	1.00	1	1	0
.............ATGTGTGACTTGTTCGGGCGATAAC................................................................................................................................................................................................................................................	25	1	1.00	1	1	0

droWil2

GCAACTCTACAAAATGCTCTAGTTGCTCTGGTGACAACTGTAATAAGGAGGTAGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
................................GACAACTGTAATAAGGAGT...................................................................................................................................................................................................................................	19	1	6.00	6	0	0	0	6	0
......CTACAAAATGCTCTAGTT..............................................................................................................................................................................................................................................................	18	1	4.00	4	0	0	0	4	0
.............ATGCTCTAGTTGCTCTGGTGAC...................................................................................................................................................................................................................................................	22	1	4.00	4	3	0	0	1	0
......CTACAAAATGCTCTAGTTGCT...........................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	1	3	0
.......................TGCTCTGGTGACAACTGT.............................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	2	0
........................GCTCTGGTGACAACTGTAATAAGGA.....................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	2	0
...ACTCTACAAAATGCTCTAGT...............................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	2	0
....CTCTACAAAATGCTCTAGTT..............................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	1	1	0
................CTCTAGTTGCTCTGGTGAC...................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0
...........................CTGGTGACAACTGTAATAAGGA.....................................................................................................................................................................................................................................	22	1	2.00	2	0	1	0	1	0
.............................GGTGACAACTGTAATAAGGAGT...................................................................................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0
..AACTCTACAAAATGCTCTAGT...............................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	2	0
........................GCTCTGGTGACAACTGTAATAAGGAGT...................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
...........AAATGCTCTAGTTGCTCTGGT......................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
......CTACAAAATGCTCTAGTTG.............................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
.....TCTACAAAATGCTCTAGTTGCT...........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.........CAAAATGCTCTAGTTGCTCTGGTGAC...................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
...........................CTGGTGACAACTGTAATAAGGAGT...................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
.............ATGCTCTAGTTGCTCTGGTGACAACT...............................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
............AATGCTCTAGTTGCTCTGGTGACAACT...............................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
.......................TGCTCTGGTGACAACTGTAATAA........................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
............AATGCTCTAGTTGCTCTGGTGAC...................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
..................CTAGTTGCTCTGGTGACAAC................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
............AATGCTCTAGTTGCTCTGGT......................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
........ACAAAATGCTCTAGTTGCTC..........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
......CTACAAAATGCTCTAGTTGCTC..........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
............AATGCTCTAGTTGCTCTGGTGACAAC................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
......CTACAAAATGCTCTAGTTGCTCTGGT......................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
..................CTAGTTGCTCTGGTGACAACTGT.............................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
.......................TGCTCTGGTGACAACTGTAATAAGGA.....................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
....CTCTACAAAATGCTCTAGTTGCTCTGG.......................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
............AATGCTCTAGTTGCTCTG........................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
....CTCTACAAAATGCTCTAGT...............................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
..........................TCTGGTGACAACTGTAATAAGGA.....................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
...........AAATGCTCTAGTTGCTCTGGTGA....................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
..................CTAGTTGCTCTGGTGACA..................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..........AAAATGCTCTAGTTGCTCTGG.......................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.................................ACAACTGTAATAAGGAGT...................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	1	0

dp5

GCAATGCCACGCAGTGCGCCAAGTGCTCCGGAGAGAACTGCAACCTGAAGGTGAATATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............GTGCGCCAAGTGCTCCGGAGA....................................................................................................................................................................................................................................................	21	1	8.00	8	0	6	0	0	1	0	1	0	0	0
............AGTGCGCCAAGTGCTCCGG.......................................................................................................................................................................................................................................................	19	1	4.00	4	0	4	0	0	0	0	0	0	0	0
...............GCGCCAAGTGCTCCGGAGAGAACT...............................................................................................................................................................................................................................................	24	1	3.00	3	0	2	0	0	1	0	0	0	0	0
.............GTGCGCCAAGTGCTCCGGAGAGAACT...............................................................................................................................................................................................................................................	26	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.............GTGCGCCAAGTGCTCCGGAGAGAACTG..............................................................................................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............GCGCCAAGTGCTCCGGAGAGAACTGC.............................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...........................CCGGAGAGAACTGCAACCTGAA.....................................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............GCGCCAAGTGCTCCGGAGA....................................................................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.............GTGCGCCAAGTGCTCCGGAGAGAACTGC.............................................................................................................................................................................................................................................	28	1	2.00	2	0	1	0	0	1	0	0	0	0	0
.................GCCAAGTGCTCCGGAGAGAACTGC.............................................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..............TGCGCCAAGTGCTCCGGAGA....................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.CAATGCCACGCAGTGCGCCAAGTGCTCC.........................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	2	0	0	0	0	0	0	0
..AATGCCACGCAGTGCGCCAAGTGC............................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........................GCTCCGGAGAGAACTGCAAC..........................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................GCCAAGTGCTCCGGAGAGAACTGCAAC..........................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................CAAGTGCTCCGGAGAGAACTGCA............................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........GCAGTGCGCCAAGTGCTCCGGAGA....................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......CACGCAGTGCGCCAAGTGCTCCGG.......................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................CCGGAGAGAACTGCAACCT........................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................AGTGCTCCGGAGAGAACTGCAACCTGA......................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...ATGCCACGCAGTGCGCCAAGT..............................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............GCGCCAAGTGCTCCGGAGAGA..................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................GAGAGAACTGCAACCTGAA.....................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............AGTGCGCCAAGTGCTCCGGAGA....................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............GTGCGCCAAGTGCTCCGGA......................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................CGGAGAGAACTGCAACCTG.......................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................GTGCTCCGGAGAGAACTGCAACCT........................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................GTGCTCCGGAGAGAACTGC.............................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................CGCCAAGTGCTCCGGAGAGAAC................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........ACGCAGTGCGCCAAGTGCTCCGGAGA....................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..AATGCCACGCAGTGCGCCA.................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...ATGCCACGCAGTGCGCCAAGTGCT...........................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............AGTGCGCCAAGTGCTCCGGAGAGAACT...............................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0

droPer2

GCAATGCCACGCAATGCGCCAAGTGCTCCGGAGAGAACTGCAACCTGAAGGTGAATATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
........................GCTCCGGAGAGAACTGCAACCT........................................................................................................................................................................................................................................	22	1	6.00	6	5	1	0	0	0	0
...........................CCGGAGAGAACTGCAACCTGA......................................................................................................................................................................................................................................	21	1	3.00	3	3	0	0	0	0	0
................................GAGAACTGCAACCTGAAG....................................................................................................................................................................................................................................	18	1	2.00	2	1	1	0	0	0	0
..............................GAGAGAACTGCAACCTGAA.....................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
............AATGCGCCAAGTGCTCCGGAGA....................................................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0
......................GTGCTCCGGAGAGAACTGC.............................................................................................................................................................................................................................................	19	1	2.00	2	1	1	0	0	0	0
...........................CCGGAGAGAACTGCAACCTGG......................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
........................GCTCCGGAGAGAACTGCAACCTGAA.....................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
........................GCTCCGGAGAGAACTGCAAC..........................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
..........................TCCGGAGAGAACTGCAACCTGAA.....................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...................CAAGTGCTCCGGAGAGAACT...............................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
............AATGCGCCAAGTGCTCCGGA......................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.........................CTCCGGAGAGAACTGCAACCTGAAG....................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.............ATGCGCCAAGTGCTCCGGAGA....................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
................CGCCAAGTGCTCCGGAGAGAACTGC.............................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0
...............GCGCCAAGTGCTCCGGAGA....................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
...................CAAGTGCTCCGGAGAGAACTGCAACCC........................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...................CAAGTGCTCCGGAGAGAACTGCAACC.........................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..........................TCCGGAGAGAACTGCAACCT........................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...................CAAGTGCTCCGGAGAGAACTGCAACCT........................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
........................GCTCCGGAGAGAACTGCAACCG........................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
....................AAGTGCTCCGGAGAGAACT...............................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
...................CAAGTGCTCCGGAGAGAACTGCAACCTGA......................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
........................GCTCCGGAGAGAACTGCAACCTGA......................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
....................AAGTGCTCCGGAGAGAACTGC.............................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..................CCAAGTGCTCCGGAGAGAACTGC.............................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.................GCCAAGTGCTCCGGAGAGAAC................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1

droAna3

GCAACACCACCAAGTGTCTGAAGTGTTCCGGTGAGAGCTGCAACAGTGAGGTACGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............GTCTGAAGTGTTCCGGTGAGA..................................................................................................................................................................................................................................................	21	1	12.00	12	0	3	0	0	9	0
.............GTGTCTGAAGTGTTCCGGTGAGA..................................................................................................................................................................................................................................................	23	1	7.00	7	0	2	1	0	1	3
............AGTGTCTGAAGTGTTCCGGTGAGA..................................................................................................................................................................................................................................................	24	1	4.00	4	1	0	0	0	3	0
.................CTGAAGTGTTCCGGTGAGA..................................................................................................................................................................................................................................................	19	1	3.00	3	0	1	0	0	2	0
.................CTGAAGTGTTCCGGTGAGAGCT...............................................................................................................................................................................................................................................	22	1	2.00	2	0	0	1	0	1	0
................................GAGAGCTGCAACAGTGAG....................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.............................GGTGAGAGCTGCAACAGTGAG....................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
................................GAGAGCTGCAACAGTGAGC...................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
............AGTGTCTGAAGTGTTCCGGTG.....................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
...................GAAGTGTTCCGGTGAGAGCT...............................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
........ACCAAGTGTCTGAAGTGTTCC.........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
................TCTGAAGTGTTCCGGTGAGA..................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
...............GTCTGAAGTGTTCCGGTGAG...................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
...........AAGTGTCTGAAGTGTTCCGGTGAGA..................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
..............TGTCTGAAGTGTTCCGGTGAGA..................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
............AGTGTCTGAAGTGTTCCGGTGAG...................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.................CTGAAGTGTTCCGGTGAGAG.................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
..........CAAGTGTCTGAAGTGTTCCGGTGAGA..................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
..........CAAGTGTCTGAAGTGTTCC.........................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
........................GTTCCGGTGAGAGCTGCAACAGTGATC...................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
...................GAAGTGTTCCGGTGAGAGC................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0

droBip1

GCAACACCACCAAGTGCCTGAAGTGTACCGGTGCGAGCTGCAACAGTGAGGTACGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATGATGC---CAACTGTACTGTGTGCTCAACTGATGGCTGCAATCGCGAGGTAATTACCC-----------------------------------------AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCAACTCCACCAAATGTGCGAGGTGCTCTGGAGAAACTTGCAATAAGGAGGTGGGTTTGTC---TTTAATTATTATA-------AAGCACCTCTAAATTGTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCAACAGCACCAAGTGCCTGAGGTGCACTGGGGCTAATTGCAACCAGCAGGTGGGCTTATG---TTTTAGTTTTATA------TGAATTA---ATTTATATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CCAACAGCACCAAGTGCTCCAGGTGCACTGGGGCTAAATGCAACCAGGAGGTGGGTTTATG---TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCAATACCACCAAGTGCCTCAGGTGCTCAGGAGAAAACTGCAACCAGCAGGTCGGTTTGGTGTTTCTTC-----AGGCGACT-------------------AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CCAACTCCACAAAGTGCTTGCGGTGCTCAGGGGAGAATTGCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GTAATACCACAAAGTGTCTCAGGTGCACAGGAGAGAAGTGCAACCAGGAGGTGGGTTTAAT---ATCTGACATTATTGGACCATAAGTTAACCATATTTATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

GCAATATCACCAAGTGCAGCAGATGCACAGGAGAGTTGTGCAACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.................AGCAGATGCACAGGAGAGTTGTG..............................................................................................................................................................................................................................................	23	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	2	0	1	0	0	0	0	0	0	0	0
....................AGATGCACAGGAGAGTTGTG..............................................................................................................................................................................................................................................	20	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	1	0	0	0	0	0	0	0
.....................GATGCACAGGAGAGTTGTG..............................................................................................................................................................................................................................................	19	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0
.................AGCAGATGCACAGGAGAGTTGT...............................................................................................................................................................................................................................................	22	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	1	1	0	0	0	0	0	0
....................AGATGCACAGGAGAGTTGT...............................................................................................................................................................................................................................................	19	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
......................ATGCACAGGAGAGTTGTG..............................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................ACAGGAGAGTTGTGCAACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............AGTGCAGCAGATGCACAGGAGAGTTG................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................CAGATGCACAGGAGAGTTGT...............................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
....TATCACCAAGTGCAGCAGAT..............................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............GCAGCAGATGCACAGGAGAGTTGTG..............................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................ATGCACAGGAGAGTTGTGC.............................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CAGCAGATGCACAGGAGA....................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................GATGCACAGGAGAGTTGT...............................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GCAATAGCACCAAGTGCAGCAGATGCACAGGAGAGTTGTGCAACGAGCAGGTGGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.................AGCAGATGCACAGGAGAGTTGT...............................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CAAGTGCAGCAGATGCACAGGAGAGT..................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....AGCACCAAGTGCAGCAGA...............................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...........................CAGGAGAGTTGTGCAACGAGCAG....................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......GCACCAAGTGCAGCAGATGC............................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................AGATGCACAGGAGAGTTGTG..............................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
............................AGGAGAGTTGTGCAACGAGC......................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............GCAGCAGATGCACAGGAGAGT..................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GCAATAGCACCAAGTGCAGCAGATGCACAGGAGAGTTGTGCAACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................GATGCACAGGAGAGTTGTG..............................................................................................................................................................................................................................................	19	1	6.00	6	0	1	5	0
.................AGCAGATGCACAGGAGAGTTGT...............................................................................................................................................................................................................................................	22	1	4.00	4	0	2	2	0
....................AGATGCACAGGAGAGTTGTG..............................................................................................................................................................................................................................................	20	1	3.00	3	1	1	1	0
..................GCAGATGCACAGGAGAGTTGTG..............................................................................................................................................................................................................................................	22	1	3.00	3	0	2	1	0
.....................GATGCACAGGAGAGTTGT...............................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0
......................ATGCACAGGAGAGTTGTG..............................................................................................................................................................................................................................................	18	1	2.00	2	0	0	1	1
.................AGCAGATGCACAGGAGAGTTGTG..............................................................................................................................................................................................................................................	23	1	2.00	2	0	1	1	0
..................GCAGATGCACAGGAGAGTTGT...............................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
..........CAAGTGCAGCAGATGCACAGGAGAGT..................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
GCAATAGCACCAAGTGCAGCAGATGC............................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0
......................ATGCACAGGAGAGTTGTGC.............................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0
...................CAGATGCACAGGAGAGTTGTG..............................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
...ATAGCACCAAGTGCAGCAGATG.............................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
.................AGCAGATGCACAGGAGAGTTGTGC.............................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
...........AAGTGCAGCAGATGCACAGGAGAGTTGTG..............................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0
..............TGCAGCAGATGCACAGGAGAGTTGTG..............................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
....................AGATGCACAGGAGAGTTGT...............................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0
...............GCAGCAGATGCACAGGAGAGTTGTG..............................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0

droYak3

CCAATAGCACAAAGTGCCTCAGATGCACAGGAGAGTCGTGCAACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............GCCTCAGATGCACAGGAGAGTC.................................................................................................................................................................................................................................................	22	1	4.00	4	0	2	1	0	0	0	1	0	0	0	0
.................CTCAGATGCACAGGAGAGTCGTGC.............................................................................................................................................................................................................................................	24	1	4.00	4	0	1	2	0	0	0	1	0	0	0	0
...............GCCTCAGATGCACAGGAGA....................................................................................................................................................................................................................................................	19	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
...............GCCTCAGATGCACAGGAGAGTCGTG..............................................................................................................................................................................................................................................	25	1	3.00	3	0	1	1	0	0	0	1	0	0	0	0
...................CAGATGCACAGGAGAGTCGTGC.............................................................................................................................................................................................................................................	22	1	3.00	3	0	1	1	0	0	0	1	0	0	0	0
.................CTCAGATGCACAGGAGAGT..................................................................................................................................................................................................................................................	19	1	3.00	3	0	2	1	0	0	0	0	0	0	0	0
.............GTGCCTCAGATGCACAGGAGAGTCGT...............................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...........AAGTGCCTCAGATGCACAGGAGAGT..................................................................................................................................................................................................................................................	25	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
.....................GATGCACAGGAGAGTCGTG..............................................................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.....................GATGCACAGGAGAGTCGTGC.............................................................................................................................................................................................................................................	20	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
...............GCCTCAGATGCACAGGAGAGTCGT...............................................................................................................................................................................................................................................	24	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
.................CTCAGATGCACAGGAGAGTCGTGCA............................................................................................................................................................................................................................................	25	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
.................CTCAGATGCACAGGAGAGTC.................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.................CTCAGATGCACAGGAGAGTCGT...............................................................................................................................................................................................................................................	22	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
..AATAGCACAAAGTGCCTCAGATGC............................................................................................................................................................................................................................................................	24	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
.................CTCAGATGCACAGGAGAGTCGTG..............................................................................................................................................................................................................................................	23	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
....................AGATGCACAGGAGAGTCGTGCAA...........................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........AAAGTGCCTCAGATGCACAGGAGAGTCGT...............................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................TCAGATGCACAGGAGAGT..................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........AAGTGCCTCAGATGCACAGGAGA....................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
..............TGCCTCAGATGCACAGGAGAGTCGT...............................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......GCACAAAGTGCCTCAGATGCACAGGAGA....................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......CACAAAGTGCCTCAGATGCA...........................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........AAAGTGCCTCAGATGCACAGGAGA....................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..AATAGCACAAAGTGCCTCAGAT..............................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....AGCACAAAGTGCCTCAGATGC............................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................ACAGGAGAGTCGTGCAAC..........................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............TGCCTCAGATGCACAGGAGA....................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........CAAAGTGCCTCAGATGCACAGGAGA....................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............AGTGCCTCAGATGCACAGGAGAGTCGTGC.............................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........ACAAAGTGCCTCAGATGCACAGGAGAGTC.................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........AAAGTGCCTCAGATGCACAGGAGAGTC.................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........ACAAAGTGCCTCAGATGCACAGGAGAGT..................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............AGTGCCTCAGATGCACAGGAGAGTCGT...............................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......CACAAAGTGCCTCAGATGC............................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........CAAAGTGCCTCAGATGCACAGGAGAGT..................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............GCCTCAGATGCACAGGAGAGTCGTGC.............................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......CACAAAGTGCCTCAGATGCACA.........................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............TGCCTCAGATGCACAGGAGAGTC.................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............TGCCTCAGATGCACAGGAGAGTCGTGC.............................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......GCACAAAGTGCCTCAGATGCACA.........................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................AGATGCACAGGAGAGTCGTG..............................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........ACAAAGTGCCTCAGATGC............................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................CTCAGATGCACAGGAGAGTCGTGCAAC..........................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

GCAATAGTGCGCAGTGCCTCAGATGCACAGGAGAGATGTGCAACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................CAGATGCACAGGAGAGATGT...............................................................................................................................................................................................................................................	20	1	4.00	4	1	0	0	1	2	0	0
.................CTCAGATGCACAGGAGAGATGTGC.............................................................................................................................................................................................................................................	24	1	3.00	3	0	1	0	0	2	0	0
.....................GATGCACAGGAGAGATGTG..............................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	2	1	0
..AATAGTGCGCAGTGCCTCAGATGCAC..........................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	2	0	0	0
...............GCCTCAGATGCACAGGAGAG...................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
......GTGCGCAGTGCCTCAGATGCACAGGA......................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0
..................TCAGATGCACAGGAGAGATGT...............................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
....................AGATGCACAGGAGAGATGT...............................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
...................CAGATGCACAGGAGAGATGTG..............................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
GCAATAGTGCGCAGTGCCTCAGATG.............................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
..AATAGTGCGCAGTGCCTCAGATG.............................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
..............TGCCTCAGATGCACAGGAGAGA..................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
....TAGTGCGCAGTGCCTCAGATGCAC..........................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0
...ATAGTGCGCAGTGCCTCAGAT..............................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
..AATAGTGCGCAGTGCCTCAGA...............................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
GCAATAGTGCGCAGTGCCTCAGATGCA...........................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.....................GATGCACAGGAGAGATGT...............................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
..............TGCCTCAGATGCACAGGAGAGATGT...............................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0

dvi_5934

scaffold_12875:10275565-10275715 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads