dvi_5930

TTTTACAAATTAAAAGTCGAATATGTAAAAGATCATATCAAGATGGTTAAATAGCTCTCCCGTCGAGATCCAAATCTTCGTTAAGTTTGTTACACAAATTTAGCTAAAAAAGCTGTTGGGTTATAAATTTTACGTTTATGATATCCAACTGTTCTAGCTATGCTCCACTGTTAACATAAGTACAAAAGACAAGTGGTTATCTACCGCAAAACGTGGCACCGACGGAATACCTGTGCCTGCTACATGAGAAA ************************************************..............((...((..((((((((......(((((((......(((((((((.(((((.......(((((.......)))))......))))).)))))))))........))).)))).....))))).)))....))...))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060662 9x160_0-2h_embryos_total	SRR060682 9x140_0-2h_embryos_total	SRR060684 140x9_0-2h_embryos_total	V116 male body
.........................................................................................................AAAGAAGCTGTAGGGTTA................................................................................................................................	18	2	9	0.33	3	0	1	1	1
..................................................................................................................................................................................................................TGGTGGCACCGACGGAAT.......................	18	2	4	0.25	1	1	0	0	0
...................................TTTCCAGATGGTTCAATAG.....................................................................................................................................................................................................	19	3	20	0.05	1	0	1	0	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_12875:10271892-10272142 -	dvi_5930	AAAATGTTTAATTTTCAGCTTATACATTTTCTAGTATAGTTCTACCAATTTATCGAGAGGGCAGCTCTAGGTTTAGAAGCAATTCAAACAATGTGTTTAAATCGATTTTTTCGACAACCCAATATTTAAAATGCAAATACTATAGGTTGACAAGATCGATACGAGGTGACAATTG-----------TATTCA---TGTTTTCTGTTCACCAATAGATGGCGTTTTGCACCGTGGCTGCCTTATGGACACGGACGATGTACT------CTTT
droMoj3	scaffold_6496:16729719-16729775 +		C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATAGATGGCGTTTTACGGCGAGGCTGCCTCATGGACACAGCCGACGACCT------CTAC
droGri2	scaffold_15245:3419108-3419185 -		AA---------------------------------------------------------------------------------------------------------------------------------------------------------------TT----------------------T------TATTTTCTTCTACCTGGCAATAGATGGTGTTTTGCACCGTGGCTGTTTGATGGACAAGGATGACGAACT------CTTT
droWil2	scf2_1100000004514:2998769-2998822 -		A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGATGGCGTTTTGACCCGTGATTGTGTTATGAAAGCCGATGATGATCT------ATTT
dp5	3:15265962-15266063 -		TG---------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGGTGACGGGTCTGCCTGAGTGCTACTCG---CGTGTC-------CTGTCCGACGGCAGCACCGAGCGCGGCTGCCTGTCCAGCCTGGAGGATGACGAGTTCCTCTCC
droPer2	scaffold_4:3785458-3785559 +		TG---------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGGTGACGGGTCTGCCTGAGTGCTACTCG---CGTGTC-------CTGTCCGACGGCAGCACCGAGCGCGGCTGCCTGTCCAGCCTGGAGGATGACGAGTTCCTCTCC
droAna3	scaffold_13266:11090703-11090755 -		T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATGGCGTCTTGAACCGTGGCTGCCTCATGGACACGGACGACGACGT------CTTC
droBip1	scf7180000396547:1377702-1377754 +		T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATGGCGTCTTGAATCGTGGTTGCCTCGTGGATACGGACGACGACGT------CTTT
droKik1	scf7180000302366:242721-242772 +		---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATGGCGTCCTGCAGCGCGGCTGTCTCATGGACACGGATGACGCCGT------CTTC
droFic1	scf7180000453858:121510-121561 -		---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATGGCGTTTTGCTGCGTGGTTGCCTTATGGACACGGATGACGAAGT------CTTT
droEle1	scf7180000491211:56659-56721 -		TG---------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------------TCATTACCAGATGGTGTTTTGCACCGAGGTTGCCTAATGGATACGGATGACGATCT------CTTC
droRho1	scf7180000768041:13675-13744 -		TG---------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------TTTTTTATAATTTCCAGATGGTGTTTTGCTCCGTGGTTGCCTAATGGATACGGATGATGACCT------CTTT
droBia1	scf7180000301754:4814111-4814188 -		AA---------------------------------------------------------------------------------------------------------------------------------------------------------------TT----------------------G------CAATGGTTTCTATCCTTCCCCAGATGGCATCACCCAGCGCAGTTGTCTGAGCAGCTTGCCTCGAGAGCA------ATTG
droTak1	scf7180000415681:284764-284815 -		---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATGGCGTTTTGGTGCGTGGTTGCCTTATGGACACCGAAGATGACCT------CTTC
droEug1	scf7180000409672:7541054-7541123 -		TG---------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------TCTCTAATCGTTTCTAGATGGCGTTTTGCTGCGTGGTTGCCTCTTGAACACTGAGGATGACGT------CTTC
dm3	chr2R:17715165-17715239 -		TG---------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------AATCCTCTTTTGTCTCTGATAGGTGGCAGAACCCAGCGTAGTTGTCTGAGCAGCTTAGAACGTGAGCA------ATTG
droSim2	2r:18253569-18253642 -		GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCCTCTTTTGTGTTTCATAGATGGCAGAACTCAGCGTAGTTGCCTGAGCAGCTTAGAACGTGAGAA------TTTG
droSec2	scaffold_9:1030228-1030301 -		GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCCTCTTTTGTGTTTCATAGATGGCAGAACTCAGCGTAGTTGCCTGAGCAGCTTAGAACGTGAGAA------TTTG
droYak3	2R:11473853-11473903 +		----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGGCGTTCTGCTGCGTGGTTGCCTTAAGGATACCGATGATGAGCT------CTTC
droEre2	scaffold_4845:11845215-11845265 -		----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGGCGTTTTGCTGCGTGGTTGCCTTATGGATACCGATGACGAGCT------CTTC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

AAAATGTTTAATTTTCAGCTTATACATTTTCTAGTATAGTTCTACCAATTTATCGAGAGGGCAGCTCTAGGTTTAGAAGCAATTCAAACAATGTGTTTAAATCGATTTTTTCGACAACCCAATATTTAAAATGCAAATACTATAGGTTGACAAGATCGATACGAGGTGACAATTG-----------TATTCA---TGTTTTCTGTTCACCAATAGATGGCGTTTTGCACCGTGGCTGCCTTATGGACACGGACGATGTACT------CTTT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................................................................................................................................................................................GATGGCGTTTTGCACCGTGGC....................................	21	1	4.00	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................GATGGCGTTTTGCACCGTGGCTGC.................................	24	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................GCCTTATGGACACGGACGAT...............	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
......................................................................................................................................................................................................................................GTGGCTGCCTTATGGACACGGA...................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TGGCGTTTTGCACCGTGGCTGCC................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TGCCTTATGGACACGGACGATGT.............	23	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GGCGTTTTGCACCGTGGC....................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TTTCAGCTTATACATTTTCTAGT............................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................CTTATGGACACGGACGATGTACT------....	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................TATGGACACGGACGATGTACT------C...	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................GTGGCTGCCTTATGGACAC......................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................GATGGCGTTTTGCACC.........................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................CACCGTGGCTGCCTTATGGACACG.....................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................GTGGCTGCCTTATGGACACGGACGAT...............	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TGCCTTATGGACACGGACGA................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................CTGCCTTATGGACACGGAC..................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................ATGGCGTTTTGCACCGTGGCT...................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................ATGGACACGGACGATGTACT------CTTT	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................GCCTTATGGACACGGACGATGTACT------....	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0

droMoj3

C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATAGATGGCGTTTTACGGCGAGGCTGCCTCATGGACACAGCCGACGACCT------CTAC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................................................................................................................................................................................GATGGCGTTTTACGGCGAGGCTGCCTC..............................	27	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................GTTTTACGGCGAGGCTGCCTCATG...........................	24	1	1.00	1	0	0	0	0	0	1

droGri2

AA---------------------------------------------------------------------------------------------------------------------------------------------------------------TT----------------------T------TATTTTCTTCTACCTGGCAATAGATGGTGTTTTGCACCGTGGCTGTTTGATGGACAAGGATGACGAACT------CTTT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.......................................................................................................................................................................................................................ATGGTGTTTTGCACCGTGGCTGTTTGAT............................	28	1	1.00	1	1	0
............................................................................................................................................................................................................................GTTTTGCACCGTGGCTGTT................................	19	1	1.00	1	1	0

droWil2

A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGATGGCGTTTTGACCCGTGATTGTGTTATGAAAGCCGATGATGATCT------ATTT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.................................................................................................................................................................................................................................................ATGAAAGCCGATGATGAT............	18	1	22.00	22	0	0	0	22	0
........................................................................................................................................................................................................................................GATTGTGTTATGAAAGCCGATGATGAT............	27	1	15.00	15	0	1	9	5	0
................................................................................................................................................................................................................................................TATGAAAGCCGATGATGAT............	19	1	10.00	10	0	0	1	9	0
........................................................................................................................................................................................................................................GATTGTGTTATGAAAGCCGATGAT...............	24	1	9.00	9	0	0	4	5	0
............................................................................................................................................................................................................................GTTTTGACCCGTGATTGTGT...............................	20	1	9.00	9	0	0	3	6	0
..............................................................................................................................................................................................................................................GTTATGAAAGCCGATGATGAT............	21	1	7.00	7	0	0	2	5	0
........................................................................................................................................................................................................................................GATTGTGTTATGAAAGCCGAT..................	21	1	7.00	7	0	0	0	7	0
........................................................................................................................................................................................................................................GATTGTGTTATGAAAGCC.....................	18	1	6.00	6	0	0	0	6	0
............................................................................................................................................................................................................................GTTTTGACCCGTGATTGT.................................	18	1	5.00	5	0	0	2	3	0
.....................................................................................................................................................................................................................AGATGGCGTTTTGACCCGT.......................................	19	1	5.00	5	0	0	0	5	0
......................................................................................................................................................................................................................GATGGCGTTTTGACCCGT.......................................	18	1	4.00	4	0	0	0	4	0
............................................................................................................................................................................................................................GTTTTGACCCGTGATTGTGTT..............................	21	1	4.00	4	0	0	2	2	0
........................................................................................................................................................................................................................................GATTGTGTTATGAAAGCCGATGATG..............	25	1	4.00	4	0	2	1	1	0
.....................................................................................................................................................................................................................................CGTGATTGTGTTATGAAAGCCGAT..................	24	1	3.00	3	1	0	1	1	0
......................................................................................................................................................................................................................GATGGCGTTTTGACCCGTGATTGTGTT..............................	27	1	3.00	3	0	0	0	3	0
......................................................................................................................................................................................................................GATGGCGTTTTGACCCGTGATTGTGT...............................	26	1	3.00	3	0	0	1	2	0
...........................................................................................................................................................................................................................................TGTGTTATGAAAGCCGATGATG..............	22	1	3.00	3	0	0	0	3	0
.........................................................................................................................................................................................................................GGCGTTTTGACCCGTGATTGTGTT..............................	24	1	3.00	3	0	1	1	1	0
......................................................................................................................................................................................................................................GTGATTGTGTTATGAAAGC......................	19	1	3.00	3	0	0	0	3	0
.........................................................................................................................................................................................................................................ATTGTGTTATGAAAGCCGATGATGAT............	26	1	3.00	3	0	0	1	2	0
.....................................................................................................................................................................................................................................CGTGATTGTGTTATGAAAGCCGATG.................	25	1	2.00	2	0	0	0	2	0
..............................................................................................................................................................................................................................TTTGACCCGTGATTGTGT...............................	18	1	2.00	2	0	0	1	1	0
...........................................................................................................................................................................................................................CGTTTTGACCCGTGATTGTGT...............................	21	1	2.00	2	0	0	0	2	0
.......................................................................................................................................................................................................................ATGGCGTTTTGACCCGTGATTGTGT...............................	25	1	2.00	2	0	0	1	1	0
.................................................................................................................................................................................................................................GACCCGTGATTGTGTTATGAAAGC......................	24	1	2.00	2	0	0	1	1	0
.........................................................................................................................................................................................................................................ATTGTGTTATGAAAGCCGATGATG..............	24	1	2.00	2	0	0	1	1	0
................................................................................................................................................................................................................................................TATGAAAGCCGATGATGA.............	18	1	2.00	2	0	0	0	2	0
......................................................................................................................................................................................................................GATGGCGTTTTGACCCGTGATTGT.................................	24	1	2.00	2	0	0	0	2	0
........................................................................................................................................................................................................................................GATTGTGTTATGAAAGCCGATGATGA.............	26	1	2.00	2	0	0	0	2	0
..........................................................................................................................................................................................................................................TTGTGTTATGAAAGCCGATGATG..............	23	1	2.00	2	0	0	1	1	0
......................................................................................................................................................................................................................................GTGATTGTGTTATGAAAGCCGAT..................	23	1	2.00	2	0	0	0	2	0
.........................................................................................................................................................................................................................GGCGTTTTGACCCGTGATTGTGT...............................	23	1	2.00	2	0	0	2	0	0
.............................................................................................................................................................................................................................................TGTTATGAAAGCCGATGATGA.............	21	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................TTTGACCCGTGATTGTGTT..............................	19	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................GCGTTTTGACCCGTGATTGT.................................	20	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................ATGGCGTTTTGACCCGTGATTGTG................................	24	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................................ATTGTGTTATGAAAGCCGATG.................	21	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................TGGCGTTTTGACCCGTGATTGT.................................	22	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................GTTATGAAAGCCGATGAT...............	18	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................GACCCGTGATTGTGTTATGAAAGCCG....................	26	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................................TTGTGTTATGAAAGCCGATGATGATC...........	26	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................................TTGTGTTATGAAAGCCGATGAT...............	22	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................GTGTTATGAAAGCCGATGATG..............	21	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................................................................................GACCCGTGATTGTGTTATGAAA........................	22	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................GACCCGTGATTGTGTTATGAAAGCC.....................	25	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................GCGTTTTGACCCGTGATTGTGT...............................	22	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................CCCGTGATTGTGTTATGAAAGCCGAT..................	26	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................................CGTTTTGACCCGTGATTGTGTT..............................	22	1	1.00	1	0	0	1	0	0
................................................................................................................................................................................................................................................TATGAAAGCCGATGATGATCT------....	21	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................GTTTTGACCCGTGATTGTGTTATGAAAGC......................	29	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................................................................ATTGTGTTATGAAAGCCGA...................	19	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................TGATTGTGTTATGAAAGCCGATGATG..............	26	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................................................ACCCGTGATTGTGTTATGAAAGCCGA...................	26	1	1.00	1	0	0	1	0	0
......................................................................................................................................................................................................................GATGGCGTTTTGACCCGTGAT....................................	21	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................TTTTGACCCGTGATTGTGT...............................	19	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................................................TGTGTTATGAAAGCCGATGAT...............	21	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................TGGCGTTTTGACCCGTGATTGTGTT..............................	25	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................GTGATTGTGTTATGAAAGCCGATGATG..............	27	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................................................................................TGTTATGAAAGCCGATGATGAT............	22	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................GTTATGAAAGCCGATGATG..............	19	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................TTGACCCGTGATTGTGTT..............................	18	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................AGATGGCGTTTTGACCCGTGAT....................................	22	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................TTGTGTTATGAAAGCCGATGATGAT............	25	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................................................................CGTGATTGTGTTATGAAAGCCG....................	22	1	1.00	1	1	0	0	0	0
..........................................................................................................................................................................................................................................TTGTGTTATGAAAGCCGATGATGA.............	24	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................TTATGAAAGCCGATGATGAT............	20	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................................CGTGATTGTGTTATGAAAGCC.....................	21	1	1.00	1	0	0	1	0	0
......................................................................................................................................................................................................................................GTGATTGTGTTATGAAAGCCG....................	21	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................GTGATTGTGTTATGAAAGCCGA...................	22	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................CGTTTTGACCCGTGATTGT.................................	19	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................GATGGCGTTTTGACCCGTGATTGTG................................	25	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................................ATTGTGTTATGAAAGCCGAT..................	20	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................GTGATTGTGTTATGAAAGCC.....................	20	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................TTTTGACCCGTGATTGTGTTATGAA.........................	25	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................TGTTATGAAAGCCGATGATG..............	20	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................................................................GTTATGAAAGCCGATGATGATCT------ATT.	26	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................ATGAAAGCCGATGATGATC...........	19	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................AGATGGCGTTTTGACCCGTGATTGTGT...............................	27	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................................CCGTGATTGTGTTATGAAAGCCGATGA................	27	1	1.00	1	1	0	0	0	0

dp5

TG---------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGGTGACGGGTCTGCCTGAGTGCTACTCG---CGTGTC-------CTGTCCGACGGCAGCACCGAGCGCGGCTGCCTGTCCAGCCTGGAGGATGACGAGTTCCTCTCC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................................................................................................................................................................................GTGCTACTCG---CGTGTC-------CTGTC..........................................................	21	1	7.00	7	0	6	0	0	1	0	0	0	0	0
..................................................................................................................................................................GAGGTGACGGGTCTGCCTG..........................................................................................	19	1	5.00	5	0	5	0	0	0	0	0	0	0	0
..................................................................................................................................................................GAGGTGACGGGTCTGCCTGA.........................................................................................	20	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................AGTGCTACTCG---CGTGTC-------CTGT...........................................................	21	1	3.00	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................GTGTC-------CTGTCCGACGGCA..................................................	18	1	3.00	3	0	3	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CG---CGTGTC-------CTGTCCGACGGC...................................................	20	1	2.00	2	0	1	0	0	1	0	0	0	0	0
......................................................................................................................................................................................GTGCTACTCG---CGTGTC-------CTGT...........................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................GCCTGTCCAGCCTGGAGGATGACG...........	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................GAGGTGACGGGTCTGCCT...........................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................GCTACTCG---CGTGTC-------CTGTCCGACGGCA..................................................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.G---------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGGTGACGGGTCTGCCTG..........................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................CTGAGTGCTACTCG---CGTGTC-------CT.............................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................CTGCCTGAGTGCTACTCG---C...........................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................CGGCAGCACCGAGCGCGGCTGC.................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................CGACGGCAGCACCGAGCGCGGC....................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................GCCTGTCCAGCCTGGAGGATGACGAGT........	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................GCTACTCG---CGTGTC-------CTGTC..........................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................AGTGCTACTCG---CGTGTC-------CTGTCCGACGG....................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................GCGCGGCTGCCTGTCCAGCC.......................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................GTGTC-------CTGTCCGACGGCAGC................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................GTCTGCCTGAGTGCTACTCG---C...........................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TGCCTGTCCAGCCTGGAGGATGACGA..........	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................CTACTCG---CGTGTC-------CTGTCCGACGGCAGC................................................	28	1	1.00	1	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................................................AGCACCGAGCGCGGCTGCCT...............................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................AGCACCGAGCGCGGCTGCCTGTCC...........................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................AGTGCTACTCG---CGTGTC-------CT.............................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................CCAGCCTGGAGGATGACGA..........	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................GCGGCTGCCTGTCCAGCCTGGAGG.................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................CTCG---CGTGTC-------CTGTCCGACGGC...................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
TG---------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGGTGACGGGTCTGCCTGA.........................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................AGCACCGAGCGCGGCTGCCTGTCCA..........................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CG---CGTGTC-------CTGTCCGACGGCAGCACCG............................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................GGTCTGCCTGAGTGCTACT.................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
TG---------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGGTGACGGGTCTGCCTG..........................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................AGCGCGGCTGCCTGTCCAGCCTG.....................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................CGGGTCTGCCTGAGTGCTACT.................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................GCTACTCG---CGTGTC-------CTGTCCGACGGC...................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................CTACTCG---CGTGTC-------CTGTCC.........................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................CGAGGTGACGGGTCTGCCTG..........................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................CGACGGCAGCACCGAGCGCGG.....................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................................GAGTGCTACTCG---CGTGTC-------CTGTCCGA.......................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.G---------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGGTGACGGGTCTGCCTGA.........................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................CGAGGTGACGGGTCTGCCTGA.........................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GCACCGAGCGCGGCTGCCTGTC............................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................GCCTGTCCAGCCTGGAGG.................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................GTC-------CTGTCCGACGGCAGCACCGAGCGC.......................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................GTC-------CTGTCCGACGGCAGCACCGA...........................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................CACCGAGCGCGGCTGCCTGTC............................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................CTGCCTGAGTGCTACTCG---CGTGTC-------CTGT...........................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................AGCACCGAGCGCGGCTGC.................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................AGCGCGGCTGCCTGTCCAGCCTGGA...................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TGCCTGTCCAGCCTGGAGG.................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TGCCTGTCCAGCCTGGAG..................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................ACGGGTCTGCCTGAGTGCTACTCG---CGT.........................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................CGCGGCTGCCTGTCCAGCCTGGAGG.................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................CTGCCTGAGTGCTACTCG---CGT.........................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................GCCTGAGTGCTACTCG---CGTGTC-------CT.............................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................GCTGCCTGTCCAGCCTGGAGGAT...............	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................CTACTCG---CGTGTC-------CTGTCCGACGGCA..................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................AGCCTGGAGGATGACGAGTTCCT....	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................AGTGCTACTCG---CGTGTC-------CTGTC..........................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................GAGGTGACGGGTCTGCCTGAG........................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................GAGGTGACGGGTCTGCCTGAGTG......................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................CTGCCTGTCCAGCCTGGAGG.................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GCACCGAGCGCGGCTGCCTGT.............................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................CTCG---CGTGTC-------CTGTCCGACGGCA..................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GACGGGTCTGCCTGAGTGC.....................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

TG---------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGGTGACGGGTCTGCCTGAGTGCTACTCG---CGTGTC-------CTGTCCGACGGCAGCACCGAGCGCGGCTGCCTGTCCAGCCTGGAGGATGACGAGTTCCTCTCC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................................................................................................................CGAGGTGACGGGTCTGCCTG..........................................................................................	20	1	10.00	10	9	1	0	0	0	0
.G---------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGGTGACGGGTCTGCCTGA.........................................................................................	22	1	4.00	4	1	0	1	0	0	2
.G---------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGGTGACGGGTCTGCCTG..........................................................................................	21	1	4.00	4	4	0	0	0	0	0
..................................................................................................................................................................GAGGTGACGGGTCTGCCTG..........................................................................................	19	1	3.00	3	3	0	0	0	0	0
.......................................................................................................................................................................GACGGGTCTGCCTGAGTGC.....................................................................................	19	1	3.00	3	3	0	0	0	0	0
..............................................................................................................................................................................................CG---CGTGTC-------CTGTCCGACGGC...................................................	20	1	3.00	3	3	0	0	0	0	0
..................................................................................................................................................................GAGGTGACGGGTCTGCCTGA.........................................................................................	20	1	2.00	2	0	0	2	0	0	0
.............................................................................................................................................................................................................................GCACCGAGCGCGGCTGCCTGTCC...........................	23	1	2.00	2	1	1	0	0	0	0
......................................................................................................................................................................................GTGCTACTCG---CGTGTC-------CTGTC..........................................................	21	1	2.00	2	0	1	1	0	0	0
.......................................................................................................................................................................................................................................................CTGGAGGATGACGAGTTCCT....	20	1	2.00	2	0	1	1	0	0	0
.......................................................................................................................................................................GACGGGTCTGCCTGAGTGCTACTCG---CGT.........................................................................	28	1	2.00	2	0	0	0	0	0	2
.......................................................................................................................................................................GACGGGTCTGCCTGAGTGCT....................................................................................	20	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................GGCTGCCTGTCCAGCCTGGAGGATGA.............	26	1	1.00	1	0	1	0	0	0	0
.G---------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGGTGACGGGTCTGC.............................................................................................	18	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................GTC-------CTGTCCGACGGCAGCAC..............................................	20	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................GCCTGTCCAGCCTGGAGGATGA.............	22	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................GTCTGCCTGAGTGCTACT.................................................................................	18	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................CGACGGCAGCACCGAGCGCGGC....................................	22	1	1.00	1	0	0	1	0	0	0
..................................................................................................................................................................................................................................GAGCGCGGCTGCCTGTCCAGCCTGGAG..................	27	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................GTGCTACTCG---CGTGTC-------CTGT...........................................................	20	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................GCTACTCG---CGTGTC-------CTGTCCGAC......................................................	23	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................CCGAGCGCGGCTGCCTGTCCAGCCTGG....................	27	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................GAGGTGACGGGTCTGCCTGAG........................................................................................	21	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................GTGCTACTCG---CGTGTC-------CTGTCCGACG.....................................................	26	1	1.00	1	1	0	0	0	0	0
TG---------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGGTGACGGGTCTGC.............................................................................................	19	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................GTGCTACTCG---CGTGTC-------CTGTCCGAC......................................................	25	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................CACCGAGCGCGGCTGCCT...............................	18	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................GGAGGATGACGAGTTCCTCT..	20	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................CGACGGCAGCACCGAGCGC.......................................	19	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................GTCCAGCCTGGAGGATGACGA..........	21	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................CGACGGCAGCACCGAGCGCGG.....................................	21	1	1.00	1	0	1	0	0	0	0
.G---------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGGTGACGGGTCTGCCTGAG........................................................................................	23	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................AGTGCTACTCG---CGTGTC-------CTG............................................................	20	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................................................................................CG---CGTGTC-------CTGTCCGACGGCAGC................................................	23	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................TGCCTGTCCAGCCTGGAG..................	18	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................GACGGGTCTGCCTGAGTGCTACT.................................................................................	23	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................GTGACGGGTCTGCCTGAGT.......................................................................................	19	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................GTGCTACTCG---CGTGTC-------CTGTCC.........................................................	22	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................TGCCTGAGTGCTACTCG---CGTGTC-------C..............................................................	24	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................TGCCTGAGTGCTACTCG---CGTGT.......................................................................	22	1	1.00	1	0	1	0	0	0	0
.G---------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGGTGACGGGTCTGT.............................................................................................	18	1	1.00	1	1	0	0	0	0	0

droAna3

T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATGGCGTCTTGAACCGTGGCTGCCTCATGGACACGGACGACGACGT------CTTC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................................................................................................................................................................................................................................CATGGACACGGACGACGAC............	19	1	4.00	4	1	0	0	0	3	0
..............................................................................................................................................................................................................................CTTGAACCGTGGCTGCCTCATGGA.........................	24	1	4.00	4	3	1	0	0	0	0
........................................................................................................................................................................................................................................GGCTGCCTCATGGACACGGAC..................	21	1	4.00	4	1	3	0	0	0	0
............................................................................................................................................................................................................................................GCCTCATGGACACGGACGACGACGT------CTT.	28	1	3.00	3	0	0	0	0	2	1
................................................................................................................................................................................................................................................CATGGACACGGACGACGACGT------CTT.	24	1	3.00	3	0	0	1	0	2	0
...........................................................................................................................................................................................................................................TGCCTCATGGACACGGACGACGACGT------....	26	1	2.00	2	0	0	0	0	1	1
...........................................................................................................................................................................................................................................TGCCTCATGGACACGGACGACGACGT------CTT.	29	1	2.00	2	0	1	0	0	1	0
..............................................................................................................................................................................................................................CTTGAACCGTGGCTGCCTCATGGACAC......................	27	1	2.00	2	1	1	0	0	0	0
........................................................................................................................................................................................................................................GGCTGCCTCATGGACACGGACGACGAC............	27	1	2.00	2	0	0	0	0	0	2
.................................................................................................................................................................................................................................GAACCGTGGCTGCCTCATGGA.........................	21	1	2.00	2	2	0	0	0	0	0
..........................................................................................................................................................................................................................GCGTCTTGAACCGTGGCTGC.................................	20	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................TGCCTCATGGACACGGACGACGACGT------C...	27	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................CGTGGCTGCCTCATGGACACGGAC..................	24	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................GCCTCATGGACACGGACGAC...............	20	1	1.00	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................................CTGCCTCATGGACACGGACGACGAC............	25	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................CATGGACACGGACGACGACGT------C...	22	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................GATGGCGTCTTGAACCGT.......................................	18	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................................................................................................................CTTGAACCGTGGCTGCCTCATGG..........................	23	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................GTCTTGAACCGTGGCTGCCT...............................	20	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................GGCTGCCTCATGGACACGGACGA................	23	1	1.00	1	0	0	1	0	0	0
............................................................................................................................................................................................................................GTCTTGAACCGTGGCTGCCTCATGG..........................	25	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................GCCTCATGGACACGGACGACGACGT------....	25	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................CTCATGGACACGGACGACGACGT------CTT.	26	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................................CTCATGGACACGGACGACGACGT------....	23	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................TTGAACCGTGGCTGCCTCATGGA.........................	23	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................GTGGCTGCCTCATGGACACGGACGAC...............	26	1	1.00	1	0	1	0	0	0	0

droBip1

T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATGGCGTCTTGAATCGTGGTTGCCTCGTGGATACGGACGACGACGT------CTTT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATGGCGTCCTGCAGCGCGGCTGTCTCATGGACACGGATGACGCCGT------CTTC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATGGCGTTTTGCTGCGTGGTTGCCTTATGGACACGGATGACGAAGT------CTTT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TG---------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------------TCATTACCAGATGGTGTTTTGCACCGAGGTTGCCTAATGGATACGGATGACGATCT------CTTC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TG---------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------TTTTTTATAATTTCCAGATGGTGTTTTGCTCCGTGGTTGCCTAATGGATACGGATGATGACCT------CTTT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AA---------------------------------------------------------------------------------------------------------------------------------------------------------------TT----------------------G------CAATGGTTTCTATCCTTCCCCAGATGGCATCACCCAGCGCAGTTGTCTGAGCAGCTTGCCTCGAGAGCA------ATTG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATGGCGTTTTGGTGCGTGGTTGCCTTATGGACACCGAAGATGACCT------CTTC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TG---------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------TCTCTAATCGTTTCTAGATGGCGTTTTGCTGCGTGGTTGCCTCTTGAACACTGAGGATGACGT------CTTC	Size	Hit Count	Total Norm	Total
No Reads

dm3

TG---------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------AATCCTCTTTTGTCTCTGATAGGTGGCAGAACCCAGCGTAGTTGTCTGAGCAGCTTAGAACGTGAGCA------ATTG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................................................................................................................................................................................................................CTGAGCAGCTTAGAACGTGAGC...........	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................GTAGTTGTCTGAGCAGCTT......................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................GAACCCAGCGTAGTTGTCTGAGC...........................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................AGCTTAGAACGTGAGCA------AT..	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TTGTCTGAGCAGCTTAGAA..................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CCAGCGTAGTTGTCTGAGC...........................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................AGCGTAGTTGTCTGAGCA..........................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................AGTTGTCTGAGCAGCTTAG....................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.........................................................................................................................................................................................................................................GTTGTCTGAGCAGCTTAG....................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................AGCGTAGTTGTCTGAGCAGC........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................GTAGTTGTCTGAGCAGCTTAGAA..................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................CCCAGCGTAGTTGTCTGAGCA..........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCCTCTTTTGTGTTTCATAGATGGCAGAACTCAGCGTAGTTGCCTGAGCAGCTTAGAACGTGAGAA------TTTG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..................................................................................................................................................................................................................................CAGCGTAGTTGCCTGAGC...........................	18	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................ACTCAGCGTAGTTGCCTG..............................	18	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................ATGGCAGAACTCAGCGTAGT....................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GGCAGAACTCAGCGTAGT....................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................CAGCGTAGTTGCCTGAGCAGC........................	21	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................AGAACTCAGCGTAGTTGCCTGAGCA..........................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GGCAGAACTCAGCGTAGTTGCCTGAGC...........................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................GTTGCCTGAGCAGCTTAGAACGTGA.............	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................GTAGTTGCCTGAGCAGCTTAGAACG................	25	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................TAGTTGCCTGAGCAGCTTAGAACGTGA.............	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GGCAGAACTCAGCGTAGTT...................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TGCCTGAGCAGCTTAGAACGTGA.............	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................AGTTGCCTGAGCAGCTTAGAACGTGA.............	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................GCAGAACTCAGCGTAGTTGCCT...............................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................CAGCGTAGTTGCCTGAGCA..........................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................CCTGAGCAGCTTAGAACGTGAGAA------TTT.	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TGGCAGAACTCAGCGTAGTTGCCTGAGCA..........................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................CAGCGTAGTTGCCTGAGCAGCTTAGA...................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................AGAACTCAGCGTAGTTGCCTGAGCAGCT.......................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................GCAGAACTCAGCGTAGTTGCCTG..............................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TTGCCTGAGCAGCTTAGAACGTGA.............	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCCTCTTTTGTGTTTCATAGATGGCAGAACTCAGCGTAGTTGCCTGAGCAGCTTAGAACGTGAGAA------TTTG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..................................................................................................................................................................................................................................CAGCGTAGTTGCCTGAGCAGCT.......................	22	1	3.00	3	0	1	2	0
.................................................................................................................................................................................................................................TCAGCGTAGTTGCCTGAGC...........................	19	1	2.00	2	0	0	2	0
..................................................................................................................................................................................................................................CAGCGTAGTTGCCTGAGCA..........................	19	1	2.00	2	2	0	0	0
........................................................................................................................................................................................................................TGGCAGAACTCAGCGTAGT....................................	19	1	1.00	1	1	0	0	0
...................................................................................................................................................................................................................................AGCGTAGTTGCCTGAGCAGCT.......................	21	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................TAGATGGCAGAACTCAGCGTAGT....................................	23	1	1.00	1	0	1	0	0
............................................................................................................................................................................................................................................GCCTGAGCAGCTTAGAACGTGAGA...........	24	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................TGCCTGAGCAGCTTAGAACGTGA.............	23	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................AGCGTAGTTGCCTGAGCAGCTT......................	22	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................ACTCAGCGTAGTTGCCTG..............................	18	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................CTCAGCGTAGTTGCCTGAGCA..........................	21	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................TGCCTGAGCAGCTTAGAACGTGAG............	24	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................AGCGTAGTTGCCTGAGCAGC........................	20	1	1.00	1	1	0	0	0
..............................................................................................................................................................................................................................................CTGAGCAGCTTAGAACGTGAGA...........	22	1	1.00	1	0	1	0	0
............................................................................................................................................................................................................................AGAACTCAGCGTAGTTGCCTGAGCA..........................	25	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................TGCCTGAGCAGCTTAGAACGTGAGAA------TT..	28	1	1.00	1	0	1	0	0
...................................................................................................................................................................................................................................AGCGTAGTTGCCTGAGCAG.........................	19	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................CAGCGTAGTTGCCTGAGCAGCTTAGA...................	26	1	1.00	1	0	1	0	0
........................................................................................................................................................................................................................................AGTTGCCTGAGCAGCTTAGAACGTGA.............	26	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................TGCCTGAGCAGCTTAGAACGT...............	21	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................................................................GTTGCCTGAGCAGCTTAGAACGT...............	23	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................CAGCGTAGTTGCCTGAGCAGCTTA.....................	24	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................................................ATGGCAGAACTCAGCGTAGT....................................	20	1	1.00	1	0	1	0	0
..................................................................................................................................................................................................................................CAGCGTAGTTGCCTGAGCAGC........................	21	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................................GCCTGAGCAGCTTAGAACGT...............	20	1	1.00	1	0	1	0	0
..................................................................................................................................................................................................................................................GCAGCTTAGAACGTGAGA...........	18	2	0.50	1	0	0	1	0

droYak3

----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGGCGTTCTGCTGCGTGGTTGCCTTAAGGATACCGATGATGAGCT------CTTC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............................................................................................................................................................................................................................GTTCTGCTGCGTGGTTGC.................................	18	1	5.00	5	0	2	3	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................CTTAAGGATACCGATGATGA.............	20	1	3.00	3	0	2	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................CTTAAGGATACCGATGATGAGCT------C...	24	1	3.00	3	0	2	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................AGGATACCGATGATGAGCT------C...	20	1	3.00	3	0	2	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................GCTGCGTGGTTGCCTTAAGG..........................	20	1	3.00	3	0	1	1	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................CTTAAGGATACCGATGATGAGCT------....	23	1	3.00	3	0	1	1	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................GTTCTGCTGCGTGGTTGCCTTAAGG..........................	25	1	3.00	3	0	1	1	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................CTGCTGCGTGGTTGCCTTAAGG..........................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................AGGATACCGATGATGAGCT------CTT.	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................ATGGCGTTCTGCTGCGTGGTTGCCT...............................	25	1	2.00	2	0	0	0	1	0	0	1	0	0	0	0
............................................................................................................................................................................................................................GTTCTGCTGCGTGGTTGCCTTAAGGATA.......................	28	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.....................................................................................................................................................................................................................................................ATACCGATGATGAGCT------CTTC	20	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................CTGCTGCGTGGTTGCCTTAAGGA.........................	23	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................CTGCGTGGTTGCCTTAAGGATAC......................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................CGTTCTGCTGCGTGGTTGC.................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................GATGGCGTTCTGCTGCGTGGTTGC.................................	24	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................CTGCTGCGTGGTTGCCTTAAGGATACC.....................	27	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................GATACCGATGATGAGCT------CTT.	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................AAGGATACCGATGATGAGCT------C...	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................CTTAAGGATACCGATGATGAGCT------CTTC	27	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................GTTCTGCTGCGTGGTTGCC................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GGCGTTCTGCTGCGTGGT....................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................CTGCTGCGTGGTTGCCTTAAGGATA.......................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................GCTGCGTGGTTGCCTTAAGGATACC.....................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TGCCTTAAGGATACCGATGATGAGCT------....	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TGCCTTAAGGATACCGATGATGAGCT------C...	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................GATGGCGTTCTGCTGCGTGGT....................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................ATGGCGTTCTGCTGCGTGGTTGC.................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................CTGCTGCGTGGTTGCCTTAAGGAT........................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................CTTAAGGATACCGATGATGAG............	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................GCTGCGTGGTTGCCTTAAGGA.........................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TCTGCTGCGTGGTTGCCTTAAG...........................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................GATGGCGTTCTGCTGCGTGGTTGCCT...............................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................GCTGCGTGGTTGCCTTAAGGATAC......................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TGCGTGGTTGCCTTAAGGAT........................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GGCGTTCTGCTGCGTGGTTGC.................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................TGCTGCGTGGTTGCCTTAAGGATA.......................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................GCCTTAAGGATACCGATGA................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................GTTCTGCTGCGTGGTTGCCTC..............................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................GTTCTGCTGCGTGGTTGCCT...............................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................TTAAGGATACCGATGATGAG............	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................GATGGCGTTCTGCTGCGT.......................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................AAGGATACCGATGATGAGCT------CTTC	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................GTTCTGCTGCGTGGTTGCCTTAAGGAT........................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................GTTGCCTTAAGGATACCGATGATGA.............	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................GCTGCGTGGTTGCCTTAAGGATACCGAT..................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................GCTGCGTGGTTGCCTTAAGGAT........................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................CTTAAGGATACCGATGATGAGCT------CTT.	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................CTTAAGGATACCGATGATGAGCT------CC..	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................AAGGATACCGATGATGAGCT------CTT.	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................TGCTGCGTGGTTGCCTTAAGG..........................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGGCGTTTTGCTGCGTGGTTGCCTTATGGATACCGATGACGAGCT------CTTC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................................................................................................................................................................................................................................................GATACCGATGACGAGCT------CTT.	20	1	4.00	4	0	0	0	0	3	1	0
.....................................................................................................................................................................................................................................................ATACCGATGACGAGCT------CTT.	19	1	2.00	2	0	0	0	0	1	1	0
.......................................................................................................................................................................................................................ATGGCGTTTTGCTGCGTGG.....................................	19	1	2.00	2	1	0	0	0	1	0	0
...................................................................................................................................................................................................................................................GGATACCGATGACGAGCT------CTT.	21	1	2.00	2	1	0	0	0	1	0	0
..............................................................................................................................................................................................................................................CTTATGGATACCGATGACGAGCT------CTT.	26	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................TATGGATACCGATGACGAGCC------....	21	1	1.00	1	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................GCTGCGTGGTTGCCTTATGG..........................	20	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................GCCTTATGGATACCGATGACGAGCT------....	25	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................................................................................TGGCGTTTTGCTGCGTGGTTGC.................................	22	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................TTGCCTTATGGATACCGAT..................	19	1	1.00	1	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................TTTGCTGCGTGGTTGCCTTATGGAT........................	25	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................TGCTGCGTGGTTGCCTTATGGA.........................	22	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TGCCTTATGGATACCGATGACGAGC...........	25	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................CTTATGGATACCGATGACGAGCC------....	23	1	1.00	1	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................TATGGATACCGATGACGAGCT------CTT.	24	1	1.00	1	0	0	0	1	0	0	0

dvi_5930

scaffold_12875:10271942-10272092 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads