ID:

dvi_5920

 Coordinate:

scaffold_12875:10122790-10122940 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.4 -5.3 -5.2

Flybase annnotation

CDS [Dvir\GJ20606-cds]; exon [dvir_GLEANR_6032:2]; intron [Dvir\GJ20606-in]; Antisense to intron [Dvir\GJ21745-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTCGGGTAGTAGGCGGTACGGTACGGCCCGGCCTGGGCAAAAGTATAAAGCCGAACCGGCGCCAGTCGCTGCTGACTAAAGCCACAAAGCGGACGTTCAACTAAAGATACGAGGAAAATGGGCACGTAGATCGACGGTTCGAGACTTTCAGACACTATCAATAACGCTCTCTCGTCTCTCTCTCTCTCTGTGTAATTGCAGCCAAGCCTGGTTTATTGCTATTGTTGCTGGCGGTGATTGGCACCTGTGTG
***************************************************************************(((..(((.((.......(((((.......)).))).......)))))...)))......******************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR1106729
mixed whole adult body
 M027
male body		 M028
head
 SRR1106728
larvae
 SRR1106727
larvae
 M047
female body
 SRR060682
9x140_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 V116
male body		 V053
head
 SRR060684
140x9_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060657
140_testes_total
 SRR060667
160_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060679
140x9_testes_total
 SRR060681
Argx9_testes_total
 SRR060687
9_0-2h_embryos_total
 SRR060688
160_ovaries_total
 V047
embryo
 M061
embryo
 SRR1106715
embryo_4-6h
 SRR060680
 9xArg_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR1106716
embryo_4-6h
 SRR060676
9xArg_ovaries_total
 GSM1528803
follicle cells		 SRR060658
140_ovaries_total
 SRR1106730
embryo_16-30h
................................................................................................................................GGTCGACAGTTCGAGACT......................................................................................................... 18 2 2 28.50 57 19 10 7 6 1 3 4 3 0 0 2 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................CGACAGTTCGAGACT......................................................................................................... 15 1 3 20.33 61 40 0 0 9 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................GGTCGACAGTTCGAGACTGT....................................................................................................... 20 3 3 17.67 53 17 11 4 1 1 3 3 2 0 1 2 3 0 0 0 0 0 3 0 0 1 0 1 0 0 0 0 0 0
...................................................................................................................................CGACAGTTCGAGACTGT....................................................................................................... 17 2 15 2.53 38 25 0 0 10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
................................................................................................................................GGTCGACAGTTCGAGACTGTC...................................................................................................... 21 3 1 2.00 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGGGCACGTAGATCGAC.................................................................................................................... 18 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................GATCGACAGTTCGAGACTGT....................................................................................................... 20 2 1 2.00 2 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................GACTAAAGCCACGAAGCGGA.............................................................................................................................................................. 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GCACGTAGATCGACGGTTCGA............................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................CGACGGTTCGAGACTTTCAGACA................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................TGACTAAAGCCACGAAGCGGAC............................................................................................................................................................. 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TTGCTGGCGGTGATTGGCACC...... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................AAAGATACGAGGAAAATGGG................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................ATACGAGGAAAATGGGCACGTAGAT........................................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTTCAACTAAAGATACGAGGAAAATGGCC................................................................................................................................ 29 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................CTAAAGCCACAAAGCGGACGTTC......................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................GGTCGACGGTTCGAGACT......................................................................................................... 18 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................GACTAAAGCCACGAAGCGGACG............................................................................................................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................GACTAAAGCCACGAAGCGGAC............................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................CGCTGCTGACTAAAGCCACGAAGCGGAC............................................................................................................................................................. 28 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................CTGACTAAAGCCACAAAGCGGA.............................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................GAAAATGGGCACGTAGATCGAC.................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CTGGTTTATTGCTATTGTTGCTGGC................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CACGTAGATCGACGGTTCGAGACT......................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................AAAATGGGCACGTAGATCGAC.................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................GCCGAACCGGCGCCAGTCGCTGCTGACT.............................................................................................................................................................................. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGGGCACGTAGATCGACGGTT................................................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................GGTGATTGGCACCTGTGT. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................AGGTCGACAGTTCGAGACTGT....................................................................................................... 21 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................AAGATACGAGGAAAATGGG................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................GGTCGACAGTTCGAGACTG........................................................................................................ 19 3 8 0.88 7 0 2 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0
..................................................................................................................................TCGACAGTTCGAGACTGT....................................................................................................... 18 2 5 0.80 4 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................GGATCGACAGTTCGAGACT......................................................................................................... 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GGATCGACAGTTCGAGACTGT....................................................................................................... 21 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................AGGTCGACAGTTCGAGAC.......................................................................................................... 18 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................CGACAGTTCGAGACTGTC...................................................................................................... 18 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................GAGGATCGACAGTTCGAGACT......................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................CGGCGGTGTTTGGCACCT..... 18 2 6 0.33 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0
........................................................CGTCTCCAGTCGCTGCTGACC.............................................................................................................................................................................. 21 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................AGGTCGTCGGTTCGAGAC.......................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................TGGGTCATCGCTATTGTTGCTG..................... 22 3 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................GATCGACAGTTCGAGACTGC....................................................................................................... 20 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................AGCCGCAAAGAGGACGTT.......................................................................................................................................................... 18 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................CGTAGGTCGGCGGTTCGA............................................................................................................. 18 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
............................................................................................................................CGTAGGTCGAGGGTTCGA............................................................................................................. 18 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CCGTAGGTCGAGGGTTCG.............................................................................................................. 18 3 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................GAGGTCGACAGTTCGAGAC.......................................................................................................... 19 3 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TGTGTACTTGTAGCCAGGCC........................................... 20 3 12 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................GTCGACAGTTCGAGACT......................................................................................................... 17 2 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................GAGGTCGATGGTTCGAGAC.......................................................................................................... 19 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................CGGCGGTGTTTGGCACC...... 17 2 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

AAGCCCATCATCCGCCATGCCATGCCGGGCCGGACCCGTTTTCATATTTCGGCTTGGCCGCGGTCAGCGACGACTGATTTCGGTGTTTCGCCTGCAAGTTGATTTCTATGCTCCTTTTACCCGTGCATCTAGCTGCCAAGCTCTGAAAGTCTGTGATAGTTATTGCGAGAGAGCAGAGAGAGAGAGAGACACATTAACGTCGGTTCGGACCAAATAACGATAACAACGACCGCCACTAACCGTGGACACAC
********************************************************************************************************************(((..(((.((.......(((((.......)).))).......)))))...)))......*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060682
9x140_0-2h_embryos_total
 V116
male body		 SRR060687
9_0-2h_embryos_total
 V047
embryo
 V053
head
..................................................GGCTTGGGCTCGGTCAGCGAC.................................................................................................................................................................................... 21 2 2 0.50 1 0 1 0 0 0
.................................................................................................GTTGATTTCTCTGCTCGTTT...................................................................................................................................... 20 2 3 0.33 1 0 0 1 0 0
...........................................................GCGGTGAGCGACGATTGAATT........................................................................................................................................................................... 21 3 6 0.33 2 2 0 0 0 0
............................................................CGGTGAGCGACGATTGAATTC.......................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0
..................................................................................................................................TGCTGCCACGTTCTGAAAGTC.................................................................................................... 21 3 11 0.09 1 0 0 0 1 0
...........................................................................................................................................................GTAGTGATTGCAAGAGAGC............................................................................. 19 3 12 0.08 1 0 0 0 0 1
......................................TGTTTATATTTCTGCTTGGC................................................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 1
......................................................TGGCCGCGGGCTGCGACGA.................................................................................................................................................................................. 19 2 20 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:10122740-10122990 - dvi_5920 TTCGGG----TAGTAGGCGGT-------ACG----GTACGGCCC-GGCCTGGGCA-AAAGTATAAAGCCGAACCGGCGCCAGTCGCTGCTGACTAAAGCCACAAAGCGGACGTTCAACTAAA------------GATACGAGGAAAATGGGCACGTA--------GATC-------------------------------------------------------------------GACGGTTCG---------A--GA---CTTTCAGAC-----------------ACTATCAATAACG-----C-------------------------TCTCTCG---TCTCTCTCTC-------TCT-----------------------------------CTGTG-------------TAATTGCAGCCAAGCCTGGTTTATTGCTATTGTTGCTGGCGGTGATTGGCACCTGTGTG
droMoj3 scaffold_6496:16900001-16900255 + TTCGAG----TAGTAGGCGGT-------ACGACCAG---GGACTGAGCCTGAGTA-GCAGTATAAAGCCCAACTGACGCCAGTCGCTGTTAGCGAAGGCAACGAAGCGGACGTTCAACTGGA-----------ATA--CTAGGAAAATGGGTACGTA--------GATC-------------------------------------------------------------------GATAGT-----------------------------------------TCGAGACTATCACTCACT-----AAC-TCTCTCTC--------------TCTCTCTCTCCCTCTCTCTC-------TTT-----------------------------------CTCTT-------------TTACTATAGCTAAACCTGGTTTTGTGCTCTTGCTGCTGGCTGTATTGGGCGCCTGTCTG
droGri2 scaffold_15245:3283082-3283356 - TTCGAG----TAGCAGGCTGAATCGCAGCGGATCGGTTCGGATCGGGTCTGGGCAAAAAGTATAAAGTCGAACCGGCGACAGTCGCAGTTAACTAAAGCAACGAAACGGACGTTCAACGACAACAA---AGAAATACTCAAGAAAAATGGGCAAGTACTTGGCGGGGC---------------------------------------------------------------------------------------------------------------AGACGGGAGGCTTC--------------------------------------------CA-------------GGAAACCCATTGATATAACTCTCTCTCTTTGTATTTAATTGTT----A--C------------TCATTACAGCCAAGTTTATG------CTGTTGTTGTTGGCTTTGATTGGCGTCTTTGTG
droWil2 scf2_1100000004514:957397-957678 + TTCAG-------------------------GCTCT---------------AGGCA-TTCATATAAAGCTCGATCCACGCCAGTCGGTCTTGAATTTAACAACGAAGCGGACGTTCAACTGTTCGA------------------AAAACAAATACAAA--------TACCAACAATTTCAATAGAAAGAAATCATGGGTAGGTTCAC-A--------TA---------------------------------------------GTTTGCTA--AAAAGAAAATGCGGAAATCTGCAAAATGAAAAGCGTTTCTCTATCTCTATTATGCACGGTCTTTCT-------------TTTCA--TAT------------------------TCCCA-----------A-------AC---GATTTGTAGTTAAATTGAGTTTCGTTTTACTATT---------AATTGGAGCCTGTATG
dp5 3:5030097-5030348 + TTCGGTCAGATCGAAACGG---------CTGTG------------------TGTC-GGCATATAAAGCCCGACGAGCGGCAGTCGATGTTGACTATAGTAACCAAGCGGACGTTCAACTGTTCAAA---ACAAATAT-----------------------------ACCAACAATTA----------TAATCATGGGTAGGTGTT--------------------------------------AT------GAAAGC-G---AATGAGTGC-------CAAATGCGGAACCATAAAGAATG-----CGG-----------------------C-TTTCA-------------TTAAA--CGT------------------------TCACAT-----TCAA---------------ATTTACAGTTCGACTGTGCTTTCTATCGCTCCT---------GATTGCTGCCTGTGTG
droPer2 scaffold_2:5229519-5229770 + TTCGGTCAGATCGAAACGG---------CTGTG------------------TGTC-GGCATATAAAGCCCGACGAGCGGCAGTCGATGTTGACTATAGTAACCAAGCGGACGTTCAACTGTTCAAA---ACAAATAT-----------------------------ACCAACAATTA----------TAATCATGGGTAGGTGTT--------------------------------------AT------GAAAGC-G---AATGAGTGC-------CAAATGCGGAACCATAAAGAATG-----CGG-----------------------C-TTTCA-------------TTAAA--CAT------------------------TCACAT-----TCAA---------------ATTTACAGTTCGACTGTGCTTTCTATCGCTCCT---------GATTGCTGCCTGTGTG
droAna3 scaffold_13266:14726153-14726383 + ----------------------------CCGATCG---------------G-----GGCATATAAAGCCCGATGAACGACAGTCGATGTTGACTATAGTAGCGAAGCGGACGTTCAACTAACCAA--------AT-------------------------------ATCCACAACTA----------TAATTATGGGTAGGTCTAAAA--------TG--------A--------AAAA----AA---------A--AATACAATTCGCAC-------GAAATGCGGAACCGGTGAGAATT-----TGG-----------------------C-TTT--------------A-------ACA-----------------------TTAACATCCC----A--C------------ATGTTGCAGCTAAACTGGGCTTTGTCTTTCTCCT---------GCTGGCCGCCTGTGTG
droBip1 scf7180000396428:100393-100628 - ----------------------------CCGATCG---------------G-----GGCATATAAAGCCCGATGAACGCCAGTCGATGTTGACTATAGTAGCGAAGCGGACGTTCAACTGGCCAAATATCCAACTAT-----------------------------ATCCACAACTA----------TAATTATGGGTAGGTCTAA-A--------TA--------------------------A---------A--AA---AATTCGCAC-------GAAATGCGGAACCGGTGAGAATT-----TGG-----------------------T-TAT--------------A-------ACA-----------------------TTAACATCC----------AACATCCC---ATGTTGCAGCTAAACTGGGCTTTGTCTTTCTCCT---------GATGGCCGCCTGTGTG
droKik1 scf7180000302470:1700724-1701000 - TTCGAC----TCGAAACAG---------CCGATCG---------------G-----GGCATATAAAGCCCGATGAACGCCAGTCGAAGTTGACTATAGTAGCGAAGCGGACGTTCAACTTGCCAA----ATAAATAC------------------------------CCCCCAACTA----------TCATCATGGGTATGTCCCAACTACATATATATATATATATATATATATATACAGCTATATCTATAAATGTAA---AATTCGCAC-------GAAATGCGGAACAACTAAGAATT-----TGC-----------------------T-TTT--------------C-------CAC-----------------------------------TT----------------TCGTTGCAGTTAAGCTGGGCTTTCTTTCTCTGCT---------GATTGCTGCCTGTGTG
droFic1 scf7180000453778:854460-854684 - TTCGAC----TCGAAACCG---------GCGATCG---------------C-----GGCATATAAAGCCCGATCAACGCCAGTCGAAGTTGACTATAGTAACGAAGCGGACGTTCAACTATC-------------------------------------------------------------------ATCATGGGTACGTCCAA-A--------TA--------T--------ATAAAGCTAC---------A--AA---TATTCGCAC-------GAAATGCGGAACCATTAAGAATT-----GGC-----------------------T-TTT--------------A-------CAT------------------------TTATTT-------A--C-------T----CATTGGCAGTTAAGCTTGGCTTTCTTTCCCTGTT---------AATTGCGGCCTTTGTG
droEle1 scf7180000491349:468463-468694 - TTCGAC----TCGAAACCG---------CCGATCG---------------G-----GGCATATAAAGCCCGATGAACGCCAGTCGATGTTGACTATAGTAACGAAGCGGACGTTCAACTATC-------------------------------------------------------------------ACGATGGGTAGGTCCAA-A--------TA------------------TATAGCTAT---------A--AA---TATTCGCAT-------GAAATGCGGAACCATTAAGAATT-----CGC-----------------------T-TTT--------------A-------CAT-----------------------------------CTATATGAACATTGTATGTTATTGCAGTTAAGCTGGGCTTTCTTTCTCTGTT---------GATTGCTGCCTGTGTG
droRho1 scf7180000779318:220999-221193 + ------------------------------------------------------------TATAAAGCCCGATGAACGCTAGTCGATGTTGACTACAGTAACGAAGCGGACGTTCAACTATC-------------------------------------------------------------------ATCATGGGTAGGTCCAA-A--------TA------------------TATAGCTAT---------A--GA---TATTCGCAA-------GAAATGCGGAACCACTAAGAATT-----CGC-----------------------T-TTT--------------A-------CAT-----------------------------------TTATAC-------GT---ATGTTGCAGTTAAGCTGGGCTTTCTTTCTCTGTT---------GATTGCTGCCTTTCTG
droBia1 scf7180000301754:2257084-2257301 - TTCGAC----TCGAAACCG---------CCGATCG---------------G-----GGCATATAAAGCCCGATGAACGGCAGTCGGAGTTGACTATAGTAACACAGCGGACGTTCAACTATC-------------------------------------------------------------------ATCATGGGTAGGTCCAA-G--------TA------------------AACAGCGAT---------A--AA---AATTCGCAC-------GAAATGCGGAACCCC-CAGAATT-----TGC-----------------------T-TTT--------------A-------CAT-----------------------------------TTATA-------------TAATTTCAGTTAAGCTGGGCTTTCTTGCGCTGTT---------AATGGCCGCCTGTGTG
droTak1 scf7180000415272:252111-252339 + TTCGAC----TCGAAACCG---------CCGATCG---------------G-----GGCATATAAAGCCCGATGAACGCCAGTCGATGTTAACTATAGTAACGAAGCGGACGTTCAACTATC------------------------------------------------------A----------TCATCATGGGTAGGTCCAA-A--------TA--------T----ACATATATGGCTAT------C--A--AA---TATTCGCAC-------GAAATGCGGAACCACTCAGAATT-----TGC-----------------------T-TTT--------------A-------CAT-----------------------------------TTATG-------------TAATTTCAGTTAAGCTGGGCTTTCTTTCTCTGTT---------AATTGCTGCCTGTGTG
droEug1 scf7180000409462:2448946-2449171 - ----------------------------CCGATCG---------------G-----GGCATATAAAGCCCGATGAACGGCAGTCGATGTTGACTATAGTAACAAAGCGGACGTTCAACTATC-------------------------------------------------------------------ATCATGGGTAGGTCCAA-A--------TATCTATATATAAAAATATATATAGCTAT---------A--AA---TATTCGCAC-------GAAATGCGGAACCACTAAGAATT-----CGG-----------------------T-TTT--------------A-------CAC----------------------------AT---TTTTATA-------------TAATTTCAGTTAAGCTGGGCTTTCTTTTGCTAAT---------AATTGCTGCCTGTGTG
dm3 chr2R:10401494-10401698 + TTCGAC----TCGAAACCG---------CCGATCG---------------G-----GGCATATAAAGCCCGTTGAACGCCAGTCGATGTTAACTATAGTAACGTAGCGGACGTTCAACTATC-------------------------------------------------------------------ATCATGGGTG-----------------------------------------GCTAT---------A--AA---TATTCGCAT-------GAGATGCGGAACCACTAAGAATT-----CGC-----------------------C-TAT--------------A-------AAT-----------------------------------TTATA-------------TAATTTCAGTTAAGCTCGGCTTTCTTTCACTGTT---------AATTGCTGCCTGTGTG
droSim2 2r:11100429-11100650 + TTCGAC----TCGAAACCG---------CCGATCG---------------G-----GGCATATAAAGCCCGTTGAACGCCAGTCGATGTTAACTATAGTAACGTAGCGGACGTTCAACTATC-------------------------------------------------------------------ATCATGGGTAGGTTTCACA--------TA--------C--------AAATCGCTAT---------A--AA---TATTCGCAC-------GAAATGCGGAACCACTAAGAATT-----CGC-----------------------C-TAT--------------A-------AAT-----------------------------------TTATA-------------TAATTTCAGTTAAGCTCGGCTTTCTTTCACTGTT---------AATTGCTGCCTGTGTG
droSec2 scaffold_1:7912042-7912263 + TTCGAC----TCGAAACCG---------CCGATCG---------------G-----GGCATATAAAGCCCGTTGAACGCCAGTCGATGTTAACTATAGTAACGTAGCGGACGTTCAACTATC-------------------------------------------------------------------ATCATGGGTAGGTTTCACA--------TA--------C--------AAATCGCTAT---------A--AA---TATTCGCTC-------GAAATGCGGAACCACTAAGAATT-----CGC-----------------------C-TAT--------------A-------AAT-----------------------------------TTATA-------------TAATTTCAGTTAAGCTCGGCTTTCTTTCACTGTT---------AATTGCTTCCTTTGTG
droYak3 2R:10327166-10327401 + TTCGAC----TCGAAACCG---------CCGATCG---------------G-----GGCATATAAAGCCCGTTGAACGCCAGTCGATGTTAACTATAGTAACGCAGCGGACGTTCAACTATC-------------------------------------------------------------------ATCATGGGTAGGTCCAA-A--------TA--------CAAATTCATATATAGCTAT---------A--AA---TACTCGTACGAAATGCGAAATGCGGAACCACTAAGAATT-----TGC-----------------------C-TTT--------------A-------CAT-----------------------------------TTATA-------------TAATTTCAGTTAAGCTCGGCTTTCTTTCTCTGTT---------AATTGCTGCCTGTGTG
droEre2 scaffold_4845:15454002-15454222 - TTCGAC----TCGAAACCG---------CCGATAG---------------G-----GGCATATAAAGCCCGTTGAACGCCAGTCGATGTTAACTCTAGTAACGTAGCGGACGTTCAACTATC-------------------------------------------------------------------ATCATGGGTAGGTCCAA-A--------TA--------C--------AAATGGCAAT---------A--AA---TACTCGCAC-------GAAATGCGGAACCAGTAAGAATT-----CGC-----------------------C-CAT--------------A-------CGT-----------------------------------TTATA-------------TAATTTCAGTTAAGCTCGGCTTTCTTTCACTGCT---------AATTGCTGCCTGTGTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TTCGGG----TAGTAGGCGGT-------ACG----GTACGGCCC-GGCCTGGGCA-AAAGTATAAAGCCGAACCGGCGCCAGTCGCTGCTGACTAAAGCCACAAAGCGGACGTTCAACTAAA------------GATACGAGGAAAATGGGCACGTA--------GATC-------------------------------------------------------------------GACGGTTCG---------A--GA---CTTTCAGAC-----------------ACTATCAATAACG-----C-------------------------TCTCTCG---TCTCTCTCTC-------TCT-----------------------------------CTGTG-------------TAATTGCAGCCAAGCCTGGTTTATTGCTATTGTTGCTGGCGGTGATTGGCACCTGTGTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................ATGGGCACGTA--------GATC-------------------------------------------------------------------GAC...........................................................................................................................................................................................................................................1812.002100000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................GCACGTA--------GATC-------------------------------------------------------------------GACGGTTCG---------A--.........................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000100
........................................................................................................................................................................C-------------------------------------------------------------------GACGGTTCG---------A--GA---CTTTCAGAC-----------------A.........................................................................................................................................................................................2311.001100000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTGGCGGTGATTGGCACC......2111.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................AAA------------GATACGAGGAAAATGGG...................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000100
.......................................................................................................................................ATACGAGGAAAATGGGCACGTA--------GAT..................................................................................................................................................................................................................................................................................................................2511.001000000000000000000100000000000000000000000000000000000000000000
............................................................................................CTAAAGCCACAAAGCGGACGTTC.......................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
........................................................................................CTGACTAAAGCCACAAAGCGGA............................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................GAAAATGGGCACGTA--------GATC-------------------------------------------------------------------GAC...........................................................................................................................................................................................................................................2211.001100000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGTTTATTGCTATTGTTGCTGGC...................2511.001000000000000000000000000000000000000000000000000000000000000100
.......................................................................................................................................................CACGTA--------GATC-------------------------------------------------------------------GACGGTTCG---------A--GA---CT..................................................................................................................................................................................................................2411.001010000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................AAAATGGGCACGTA--------GATC-------------------------------------------------------------------GAC...........................................................................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
..................................................................GCCGAACCGGCGCCAGTCGCTGCTGACT............................................................................................................................................................................................................................................................................................................................................................................................2811.001010000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................ATGGGCACGTA--------GATC-------------------------------------------------------------------GACGGTT.......................................................................................................................................................................................................................................2211.001010000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATTGGCACCTGTGT.1811.001000000010000000000000000000000000000000000000000000000000000000
........................................................................................................................AA------------GATACGAGGAAAATGGG...................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
droMoj3
TTCGAG----TAGTAGGCGGT-------ACGACCAG---GGACTGAGCCTGAGTA-GCAGTATAAAGCCCAACTGACGCCAGTCGCTGTTAGCGAAGGCAACGAAGCGGACGTTCAACTGGA-----------ATA--CTAGGAAAATGGGTACGTA--------GATC-------------------------------------------------------------------GATAGT-----------------------------------------TCGAGACTATCACTCACT-----AAC-TCTCTCTC--------------TCTCTCTCTCCCTCTCTCTC-------TTT-----------------------------------CTCTT-------------TTACTATAGCTAAACCTGGTTTTGTGCTCTTGCTGCTGGCTGTATTGGGCGCCTGTCTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................TGTTAGCGAAGGCAACGAAGCGGACG..........................................................................................................................................................................................................................................................................................................................................................................2611.001001000
...................................................................................................................AACTGGA-----------ATA--CTAGGAAAATGGC...................................................................................................................................................................................................................................................................................................................................2311.001000001
.....................................................................................................CGAAGCGGACGTTCAACTGGA-----------AG...................................................................................................................................................................................................................................................................................................................................................2311.001000100
......................................................................................................................................................GTACGTA--------GATC-------------------------------------------------------------------GATAGT-----------------------------------------TCGAGACTA......................................................................................................................................................................................2611.001000001
.....................................................................................................CGAAGCGGACGTTCAACTGGA-----------.....................................................................................................................................................................................................................................................................................................................................................2111.001000001
.............................................................................................GAAGGCAACGAAGCGGACGTTC.......................................................................................................................................................................................................................................................................................................................................................................2211.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCTGCTGGCTGTATTGGGCG........2311.001000001
..........................................................................................AGCGAAGGCAACGAAGCGGAC...........................................................................................................................................................................................................................................................................................................................................................................2111.001000100
.....................................................................................CTGTTAGCGAAGGCAACGAAGCGGAC...........................................................................................................................................................................................................................................................................................................................................................................2611.001000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATTGGGCGCCTGTCTG1911.001000001
...................................................................................................AACGAAGCGGACGTTCAACTGGA-----------ATA--................................................................................................................................................................................................................................................................................................................................................2611.001100000
droGri2
TTCGAG----TAGCAGGCTGAATCGCAGCGGATCGGTTCGGATCGGGTCTGGGCAAAAAGTATAAAGTCGAACCGGCGACAGTCGCAGTTAACTAAAGCAACGAAACGGACGTTCAACGACAACAA---AGAAATACTCAAGAAAAATGGGCAAGTACTTGGCGGGGC---------------------------------------------------------------------------------------------------------------AGACGGGAGGCTTC--------------------------------------------CA-------------GGAAACCCATTGATATAACTCTCTCTCTTTGTATTTAATTGTT----A--C------------TCATTACAGCCAAGTTTATG------CTGTTGTTGTTGGCTTTGATTGGCGTCTTTGTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TATG------CTGTTGTTGTTGGCTT.................2011.00101
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGTTGGCTTTGATTGGCG........2311.00110
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGGCTTTGATTGGCGT.......1911.00101
...................................................................................................................................................................................................................................................................................................................................................................................................TAATTGTT----A--C------------TCATTACAGCC................................................2111.00110
....................................................................................................ACGAAACGGACGTTCAACGACAAC..............................................................................................................................................................................................................................................................................................................................................................2411.00110
......................................................................................................GAAACGGACGTTCAACGACA................................................................................................................................................................................................................................................................................................................................................................2011.00110
.........................................................................................................................................................AGTACTTGGCGGGGC---------------------------------------------------------------------------------------------------------------AGA................................................................................................................................................................................................1811.00110
...................................................................................................................................AAATACTCAAGAAAAATG.....................................................................................................................................................................................................................................................................................................................................1811.00110
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGGCTTTGATTGGCGTCTTTGTG2711.00101
..................................................................................TCGCAGTTAACTAAAGCAACG...................................................................................................................................................................................................................................................................................................................................................................................2111.00101
........................................................................................................AACGGACGTTCAACGACAACA.............................................................................................................................................................................................................................................................................................................................................................2111.00110
....................................................................................................ACGAAACGGACGTTCAACG...................................................................................................................................................................................................................................................................................................................................................................1911.00101
..................................................................................................................................................................................................................................................................................................................................................................................................................................................G------CTGTTGTTGTTGGCTTTG...............1940.25101
droWil2
TTCAG-------------------------GCTCT---------------AGGCA-TTCATATAAAGCTCGATCCACGCCAGTCGGTCTTGAATTTAACAACGAAGCGGACGTTCAACTGTTCGA------------------AAAACAAATACAAA--------TACCAACAATTTCAATAGAAAGAAATCATGGGTAGGTTCAC-A--------TA---------------------------------------------GTTTGCTA--AAAAGAAAATGCGGAAATCTGCAAAATGAAAAGCGTTTCTCTATCTCTATTATGCACGGTCTTTCT-------------TTTCA--TAT------------------------TCCCA-----------A-------AC---GATTTGTAGTTAAATTGAGTTTCGTTTTACTATT---------AATTGGAGCCTGTATGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................TTTAACAACGAAGCGGACGT.........................................................................................................................................................................................................................................................................................................................................................................2013.00330000
..............................................................................................TTAACAACGAAGCGGACGT.........................................................................................................................................................................................................................................................................................................................................................................1913.00330000
....................................................................................................ACGAAGCGGACGTTCAAC....................................................................................................................................................................................................................................................................................................................................................................1813.00330000
..................................................................................................CAACGAAGCGGACGTTCAACTGTTCGA------------------AA.........................................................................................................................................................................................................................................................................................................................................2912.00220000
.............................................................................................TTTAACAACGAAGCGGAC...........................................................................................................................................................................................................................................................................................................................................................................1812.00220000
.........................................................................................................GCGGACGTTCAACTGTTC...............................................................................................................................................................................................................................................................................................................................................................1812.00220000
................................................................................................AACAACGAAGCGGACGTT........................................................................................................................................................................................................................................................................................................................................................................1812.00220000
.............................................................ATAAAGCTCGATCCACGCCAGTCGGTC..................................................................................................................................................................................................................................................................................................................................................................................................2712.00220000
............................................................................................ATTTAACAACGAAGCGGACGT.........................................................................................................................................................................................................................................................................................................................................................................2112.00220000
......................................................................................................GAAGCGGACGTTCAACTGTTC...............................................................................................................................................................................................................................................................................................................................................................2112.00220000
..............................................................................................TTAACAACGAAGCGGACGG.........................................................................................................................................................................................................................................................................................................................................................................1911.00110000
...................................................................................................AACGAAGCGGACGTTCAACTG..................................................................................................................................................................................................................................................................................................................................................................2111.00100100
...............................................................................................................................................................................TTCAATAGAAAGAAATCATGG......................................................................................................................................................................................................................................................................................2111.00101000
........................................................................................TTGAATTTAACAACGAAGCGGACGTT........................................................................................................................................................................................................................................................................................................................................................................2611.00110000
........................................................................................................AGCGGACGTTCAACTGTTC...............................................................................................................................................................................................................................................................................................................................................................1911.00110000
.......................................................................................................AAGCGGACGTTCAACTGTT................................................................................................................................................................................................................................................................................................................................................................1911.00110000
.....................................................................................................CGAAGCGGACGTTCAACTGTTCGA------------------...........................................................................................................................................................................................................................................................................................................................................2411.00110000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTTTCGTTTTACTATT---------AATTGGAG........2711.00100100
............................................................................................ATTTAACAACGAAGCGGACG..........................................................................................................................................................................................................................................................................................................................................................................2011.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTCGTTTTACTATT---------AATTGGAG........2611.00101000
................................................................................................................TTCAACTGTTCGA------------------AAAAC......................................................................................................................................................................................................................................................................................................................................1811.00110000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGAGTTTCGTTTTACT............................2011.00110000
.............................................................................................TTTAACAACGAAGCGGACGG.........................................................................................................................................................................................................................................................................................................................................................................2011.00110000
.............................................................................................TTTAACAACGAAGCGGACGTTCAACTGC.................................................................................................................................................................................................................................................................................................................................................................2811.00110000
................................................................................................AACAACGAAGCGGACGTTCAACTGTTC...............................................................................................................................................................................................................................................................................................................................................................2711.00110000
..............................................................................................TTAACAACGAAGCGGACGTTCAAC....................................................................................................................................................................................................................................................................................................................................................................2411.00110000
.............................................................................................TTTAACAACGAAGCGGACGTTCAACTGT.................................................................................................................................................................................................................................................................................................................................................................2811.00110000
...............................................................................................TAACAACGAAGCGGACGT.........................................................................................................................................................................................................................................................................................................................................................................1811.00110000
...................................................................................................................................................................................ATAGAAAGAAATCATGGG.....................................................................................................................................................................................................................................................................................1811.00100001
.................................................................................................ACAACGAAGCGGACGTTCAACT...................................................................................................................................................................................................................................................................................................................................................................2211.00110000
......................................................................................................GAAGCGGACGTTCAACTGTTCGA------------------A..........................................................................................................................................................................................................................................................................................................................................2411.00110000
...............................................................................................................................................................................TTCAATAGAAAGAAATCATGGT.....................................................................................................................................................................................................................................................................................2211.00100100
.............................................................................................TTTAACAACGAAGCGGACGTTCAAC....................................................................................................................................................................................................................................................................................................................................................................2511.00110000
...............................................................................................................................................................................TTCAATAGAAAGAAATCATG.......................................................................................................................................................................................................................................................................................2011.00101000
dp5
TTCGGTCAGATCGAAACGG---------CTGTG------------------TGTC-GGCATATAAAGCCCGACGAGCGGCAGTCGATGTTGACTATAGTAACCAAGCGGACGTTCAACTGTTCAAA---ACAAATAT-----------------------------ACCAACAATTA----------TAATCATGGGTAGGTGTT--------------------------------------AT------GAAAGC-G---AATGAGTGC-------CAAATGCGGAACCATAAAGAATG-----CGG-----------------------C-TTTCA-------------TTAAA--CGT------------------------TCACAT-----TCAA---------------ATTTACAGTTCGACTGTGCTTTCTATCGCTCCT---------GATTGCTGCCTGTGTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................GATGTTGACTATAGTAACCAAGCGGA............................................................................................................................................................................................................................................................................................................................................................................2612.0020000000011
.......................................................................................GTTGACTATAGTAACCAAGC...............................................................................................................................................................................................................................................................................................................................................................................2011.0010000000001
..........................................................................................................................................................................ACAATTA----------TAATCATGGGTA...................................................................................................................................................................................................................................................................................1911.0010100000000
.TCGGTCAGATCGAAACGG---------CTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................................................................................CTATAGTAACCAAGCGGACGTT........................................................................................................................................................................................................................................................................................................................................................................2211.0010000001000
...........................................................................................ACTATAGTAACCAAGCGGACGTTCAACTG..................................................................................................................................................................................................................................................................................................................................................................2911.0010000001000
.................................................................................................GTAACCAAGCGGACGTTCAACTG..................................................................................................................................................................................................................................................................................................................................................................2311.0010000001000
......................................................................................TGTTGACTATAGTAACCAAGCGGAC...........................................................................................................................................................................................................................................................................................................................................................................2511.0010000000001
..................................................................................................TAACCAAGCGGACGTTCAACTGTTCAAA---.........................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
...........................................................................................ACTATAGTAACCAAGCGGACGTTC.......................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
................................................................AAGCCCGACGAGCGGCAGTCGATG..................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
......................................................................................TGTTGACTATAGTAACCAAGC...............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCT---------GATTGCTGCCTGTGTG2011.0010100000000
droPer2
TTCGGTCAGATCGAAACGG---------CTGTG------------------TGTC-GGCATATAAAGCCCGACGAGCGGCAGTCGATGTTGACTATAGTAACCAAGCGGACGTTCAACTGTTCAAA---ACAAATAT-----------------------------ACCAACAATTA----------TAATCATGGGTAGGTGTT--------------------------------------AT------GAAAGC-G---AATGAGTGC-------CAAATGCGGAACCATAAAGAATG-----CGG-----------------------C-TTTCA-------------TTAAA--CAT------------------------TCACAT-----TCAA---------------ATTTACAGTTCGACTGTGCTTTCTATCGCTCCT---------GATTGCTGCCTGTGTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................AGTAACCAAGCGGACGTTC.......................................................................................................................................................................................................................................................................................................................................................................1911.001000010
....................................................................................................................................................................................................................................................T------GAAAGC-G---AATGAGTGC-------CAAAT...............................................................................................................................................................................................2211.001000010
...................................................................................................AACCAAGCGGACGTTCAAC....................................................................................................................................................................................................................................................................................................................................................................1911.001100000
................................................................................................AGTAACCAAGCGGACGTTCAACT...................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...............................................................................................................................................................................................................................................................GC-G---AATGAGTGC-------CAAATGCGG...........................................................................................................................................................................................2111.001000001
....................................................................................................ACCAAGCGGACGTTCAACT...................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...........................................................................................ACTATAGTAACCAAGCGGACGTTCAAC....................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.............................................................................................TATAGTAACCAAGCGGACGTTCAACT...................................................................................................................................................................................................................................................................................................................................................................2611.001100000
droAna3
----------------------------CCGATCG---------------G-----GGCATATAAAGCCCGATGAACGACAGTCGATGTTGACTATAGTAGCGAAGCGGACGTTCAACTAACCAA--------AT-------------------------------ATCCACAACTA----------TAATTATGGGTAGGTCTAAAA--------TG--------A--------AAAA----AA---------A--AATACAATTCGCAC-------GAAATGCGGAACCGGTGAGAATT-----TGG-----------------------C-TTT--------------A-------ACA-----------------------TTAACATCCC----A--C------------ATGTTGCAGCTAAACTGGGCTTTGTCTTTCTCCT---------GCTGGCCGCCTGTGTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................GACTATAGTAGCGAAGCGGA............................................................................................................................................................................................................................................................................................................................................................................2012.002000002
..........................................................................................GACTATAGTAGCGAAGCGGACGTTCAAC....................................................................................................................................................................................................................................................................................................................................................................2811.001000001
...................................................................................................AGCGAAGCGGACGTTCAACTAACC...............................................................................................................................................................................................................................................................................................................................................................2411.001100000
..........................................................................................GACTATAGTAGCGAAGCGGACGT.........................................................................................................................................................................................................................................................................................................................................................................2311.001000001
.................................................................................................................TCAACTAACCAA--------AT-------------------------------ATCCACAACTA----------T..............................................................................................................................................................................................................................................................................................2611.001010000
.........................................................................................TGACTATAGTAGCGAAGCGGACGTTCA......................................................................................................................................................................................................................................................................................................................................................................2711.001000001
.......................................................................................GTTGACTATAGTAGCGAAGCGGACG..........................................................................................................................................................................................................................................................................................................................................................................2511.001000001
...................................................................................CGATGTTGACTATAGTAGCGAAGCG..............................................................................................................................................................................................................................................................................................................................................................................2511.001000010
..........................................................................................GACTATAGTAGCGAAGCGGAC...........................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.................................................................................................................TCAACTAACCAA--------AT-------------------------------ATCCACAACTA----------TA.............................................................................................................................................................................................................................................................................................2711.001010000
............................................................................................CTATAGTAGCGAAGCGGACGTTCA......................................................................................................................................................................................................................................................................................................................................................................2411.001000001
..........................................................................................GACTATAGTAGCGAAGCGGACGTT........................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..........................................................................................GACTATAGTAGCGAAGCGGACGTTCA......................................................................................................................................................................................................................................................................................................................................................................2611.001100000
droBip1
----------------------------CCGATCG---------------G-----GGCATATAAAGCCCGATGAACGCCAGTCGATGTTGACTATAGTAGCGAAGCGGACGTTCAACTGGCCAAATATCCAACTAT-----------------------------ATCCACAACTA----------TAATTATGGGTAGGTCTAA-A--------TA--------------------------A---------A--AA---AATTCGCAC-------GAAATGCGGAACCGGTGAGAATT-----TGG-----------------------T-TAT--------------A-------ACA-----------------------TTAACATCC----------AACATCCC---ATGTTGCAGCTAAACTGGGCTTTGTCTTTCTCCT---------GATGGCCGCCTGTGTGSizeHit CountTotal NormTotal
No Reads
droKik1
TTCGAC----TCGAAACAG---------CCGATCG---------------G-----GGCATATAAAGCCCGATGAACGCCAGTCGAAGTTGACTATAGTAGCGAAGCGGACGTTCAACTTGCCAA----ATAAATAC------------------------------CCCCCAACTA----------TCATCATGGGTATGTCCCAACTACATATATATATATATATATATATATATACAGCTATATCTATAAATGTAA---AATTCGCAC-------GAAATGCGGAACAACTAAGAATT-----TGC-----------------------T-TTT--------------C-------CAC-----------------------------------TT----------------TCGTTGCAGTTAAGCTGGGCTTTCTTTCTCTGCT---------GATTGCTGCCTGTGTGSizeHit CountTotal NormTotal
No Reads
droFic1
TTCGAC----TCGAAACCG---------GCGATCG---------------C-----GGCATATAAAGCCCGATCAACGCCAGTCGAAGTTGACTATAGTAACGAAGCGGACGTTCAACTATC-------------------------------------------------------------------ATCATGGGTACGTCCAA-A--------TA--------T--------ATAAAGCTAC---------A--AA---TATTCGCAC-------GAAATGCGGAACCATTAAGAATT-----GGC-----------------------T-TTT--------------A-------CAT------------------------TTATTT-------A--C-------T----CATTGGCAGTTAAGCTTGGCTTTCTTTCCCTGTT---------AATTGCGGCCTTTGTGSizeHit CountTotal NormTotal
No Reads
droEle1
TTCGAC----TCGAAACCG---------CCGATCG---------------G-----GGCATATAAAGCCCGATGAACGCCAGTCGATGTTGACTATAGTAACGAAGCGGACGTTCAACTATC-------------------------------------------------------------------ACGATGGGTAGGTCCAA-A--------TA------------------TATAGCTAT---------A--AA---TATTCGCAT-------GAAATGCGGAACCATTAAGAATT-----CGC-----------------------T-TTT--------------A-------CAT-----------------------------------CTATATGAACATTGTATGTTATTGCAGTTAAGCTGGGCTTTCTTTCTCTGTT---------GATTGCTGCCTGTGTGSizeHit CountTotal NormTotal
No Reads
droRho1
------------------------------------------------------------TATAAAGCCCGATGAACGCTAGTCGATGTTGACTACAGTAACGAAGCGGACGTTCAACTATC-------------------------------------------------------------------ATCATGGGTAGGTCCAA-A--------TA------------------TATAGCTAT---------A--GA---TATTCGCAA-------GAAATGCGGAACCACTAAGAATT-----CGC-----------------------T-TTT--------------A-------CAT-----------------------------------TTATAC-------GT---ATGTTGCAGTTAAGCTGGGCTTTCTTTCTCTGTT---------GATTGCTGCCTTTCTGSizeHit CountTotal NormTotal
No Reads
droBia1
TTCGAC----TCGAAACCG---------CCGATCG---------------G-----GGCATATAAAGCCCGATGAACGGCAGTCGGAGTTGACTATAGTAACACAGCGGACGTTCAACTATC-------------------------------------------------------------------ATCATGGGTAGGTCCAA-G--------TA------------------AACAGCGAT---------A--AA---AATTCGCAC-------GAAATGCGGAACCCC-CAGAATT-----TGC-----------------------T-TTT--------------A-------CAT-----------------------------------TTATA-------------TAATTTCAGTTAAGCTGGGCTTTCTTGCGCTGTT---------AATGGCCGCCTGTGTGSizeHit CountTotal NormTotal
No Reads
droTak1
TTCGAC----TCGAAACCG---------CCGATCG---------------G-----GGCATATAAAGCCCGATGAACGCCAGTCGATGTTAACTATAGTAACGAAGCGGACGTTCAACTATC------------------------------------------------------A----------TCATCATGGGTAGGTCCAA-A--------TA--------T----ACATATATGGCTAT------C--A--AA---TATTCGCAC-------GAAATGCGGAACCACTCAGAATT-----TGC-----------------------T-TTT--------------A-------CAT-----------------------------------TTATG-------------TAATTTCAGTTAAGCTGGGCTTTCTTTCTCTGTT---------AATTGCTGCCTGTGTGSizeHit CountTotal NormTotal
No Reads
droEug1
----------------------------CCGATCG---------------G-----GGCATATAAAGCCCGATGAACGGCAGTCGATGTTGACTATAGTAACAAAGCGGACGTTCAACTATC-------------------------------------------------------------------ATCATGGGTAGGTCCAA-A--------TATCTATATATAAAAATATATATAGCTAT---------A--AA---TATTCGCAC-------GAAATGCGGAACCACTAAGAATT-----CGG-----------------------T-TTT--------------A-------CAC----------------------------AT---TTTTATA-------------TAATTTCAGTTAAGCTGGGCTTTCTTTTGCTAAT---------AATTGCTGCCTGTGTGSizeHit CountTotal NormTotal
No Reads
dm3
TTCGAC----TCGAAACCG---------CCGATCG---------------G-----GGCATATAAAGCCCGTTGAACGCCAGTCGATGTTAACTATAGTAACGTAGCGGACGTTCAACTATC-------------------------------------------------------------------ATCATGGGTG-----------------------------------------GCTAT---------A--AA---TATTCGCAT-------GAGATGCGGAACCACTAAGAATT-----CGC-----------------------C-TAT--------------A-------AAT-----------------------------------TTATA-------------TAATTTCAGTTAAGCTCGGCTTTCTTTCACTGTT---------AATTGCTGCCTGTGTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................GTAGCGGACGTTCAACTA..................................................................................................................................................................................................................................................................................................................................................................1817.0070000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000100000000000000000000000000000
...........................................................................................................................................................................................................................................................................GCAT-------GAGATGCGGAACCA......................................................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................AACTATAGTAACGTAGCGGACG..........................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000100000000000
..........................................................................................................................................................................................................................................................................................TGCGGAACCACTAAGAATT-----CG......................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
................................................................................................AGTAACGTAGCGGACGTT........................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................................................................................CTATAGTAACGTAGCGGAC...........................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000
..........................................................................................AACTATAGTAACGTAGCGGAC...........................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGCTTTCTTTCACTGTT---------AATTGC..........2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................ATAGTAACGTAGCGGACG..........................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.....................................................................................................CGTAGCGGACGTTCAACTA..................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
................................................................................AGTCGATGTTAACTATAGTAACG...................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTCGGCTTTCTTTCACTGTT---------AAT.............2611.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTTCACTGTT---------AATTGCTGCCTGTGT.2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................ACGTTCAACTATC-------------------------------------------------------------------ATCATGG......................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..............................................................................................ATAGTAACGTAGCGGACGTTC.......................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................GCAT-------GAGATGCGGAACCC......................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................ATGTTAACTATAGTAACGTAGCGG.............................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.....................................................................................................CGTAGCGGACGTTCAACTAT.................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................AACTATAGTAACGTAGCG..............................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................TAGCGGACGTTCAACTATC-------------------------------------------------------------------ATCATGGT.....................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTTCACTGTT---------AATTGCT.........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
................................................................................AGTCGATGTTAACTATAGTA......................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................CCGTTGAACGCCAGTCGA....................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................ATGCGGAACCACTAAGAATT-----CG......................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TTATA-------------TAATTTCAGTTAAGCTCG.........................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
................................................................................AGTCGATGTTAACTATAGTAACGTAG................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TCGAC----TCGAAACCG---------CCGATCG---------------T-----..................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTTAAGCTCGGCTTTCTT.................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCACTGTT---------AATTGCTGCC......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................ATAGTAACGTAGCGGACGTTCAAC....................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................GTAGCGGACGTTCAACTATC-------------------------------------------------------------------.............................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
....................................................................................................ACGTAGCGGACGTTCAACTATC-------------------------------------------------------------------AT...........................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................CGCAT-------GAGATGCGGAACCACTAAGAATT-----CG......................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................AACTATAGTAACGTAGCGGACGTT........................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................GAACCACTAAGAATT-----CGC-----------------------C-............................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................C-------------------------------------------------------------------ATCATGGGTG-----------------------------------------GCTAT---------A--AA---TAT.................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TTCGAC----TCGAAACCG---------CCGATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............ACCG---------CCGATCG---------------G-----GGCATATAA.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................AGATGCGGAACCACTAAGAAT..............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................AGCGGACGTTCAACTATC-------------------------------------------------------------------ATCA.........................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................AACTATAGTAACGTAGCGGACGTTT.......................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
TTCGAC----TCGAAACCG---------CCGATCG---------------........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
......................................................................................TGTTAACTATAGTAACGTAGCGGA............................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................GCGGACGTTCAACTATC-------------------------------------------------------------------A............................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................................................................................CTATAGTAACGTAGCGGA............................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................CGTAGCGGACGTTCAACTATC-------------------------------------------------------------------ATCATGG......................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTCACTGTT---------AATTGCTGCC......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................ATGCGGAACCACTAAGAAT..............................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGGCTTTCTTTCACTGTT---------AA..............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................GAGATGCGGAACCACTAAGA................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAGTTAAGCTCGGCTTT....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGCTCGGCTTTCTTTCACTGTT---------AATTG...........3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................GCGGACGTTCAACTATC-------------------------------------------------------------------ATCATGGGT....................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...................................................................................CGATGTTAACTATAGTAACGTAGC...............................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................GTTAACTATAGTAACGTAGCGGACG..........................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
......................................................................................................GTAGCGGACGTTCAACTATC-------------------------------------------------------------------ATCATG.......................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................................................................................AACTATAGTAACGTAGCGGACGTTC.......................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.............................................................................GCCAGTCGATGTTAACTATAGTAACG...................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................................................................................................AGTAACGTAGCGGACGTTATC.....................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TTCGAC----TCGAAACCG---------CCGATCG---------------G-----GGCATATAAAGCCCGTTGAACGCCAGTCGATGTTAACTATAGTAACGTAGCGGACGTTCAACTATC-------------------------------------------------------------------ATCATGGGTAGGTTTCACA--------TA--------C--------AAATCGCTAT---------A--AA---TATTCGCAC-------GAAATGCGGAACCACTAAGAATT-----CGC-----------------------C-TAT--------------A-------AAT-----------------------------------TTATA-------------TAATTTCAGTTAAGCTCGGCTTTCTTTCACTGTT---------AATTGCTGCCTGTGTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................GTAGCGGACGTTCAACTA..................................................................................................................................................................................................................................................................................................................................................................1813.00330000000000000000
........................................................................................................AGCGGACGTTCAACTATC-------------------------------------------------------------------.............................................................................................................................................................................................................................................................................................1812.00220000000000000000
..............................................................................................ATAGTAACGTAGCGGACG..........................................................................................................................................................................................................................................................................................................................................................................1812.00220000000000000000
................................................................................................AGTAACGTAGCGGACGTTCAAC....................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCACTGTT---------AATTGCTGCCC.....2111.00101000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTTCACTGTT---------AATTGCTGCCT.....2511.00100100000000000000
..................................................................................................TAACGTAGCGGACGTTCAACT...................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
..................................................................................................................CAACTATC-------------------------------------------------------------------ATCATGGGTAGGTTTC.............................................................................................................................................................................................................................................................................2411.00100000100000000000
..........................................................................................AACTATAGTAACGTAGCGGACG..........................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
........................................................................................................AGCGGACGTTCAACTATC-------------------------------------------------------------------ATC..........................................................................................................................................................................................................................................................................................2111.00110000000000000000
droSec2
TTCGAC----TCGAAACCG---------CCGATCG---------------G-----GGCATATAAAGCCCGTTGAACGCCAGTCGATGTTAACTATAGTAACGTAGCGGACGTTCAACTATC-------------------------------------------------------------------ATCATGGGTAGGTTTCACA--------TA--------C--------AAATCGCTAT---------A--AA---TATTCGCTC-------GAAATGCGGAACCACTAAGAATT-----CGC-----------------------C-TAT--------------A-------AAT-----------------------------------TTATA-------------TAATTTCAGTTAAGCTCGGCTTTCTTTCACTGTT---------AATTGCTTCCTTTGTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................AGTAACGTAGCGGACGTTCAA.....................................................................................................................................................................................................................................................................................................................................................................2111.0010001
..................................................................................................TAACGTAGCGGACGTTCAACTATC-------------------------------------------------------------------.............................................................................................................................................................................................................................................................................................2411.0010100
..........................................................................................AACTATAGTAACGTAGCGGACGTTC.......................................................................................................................................................................................................................................................................................................................................................................2511.0011000
............................................................................................CTATAGTAACGTAGCGGACGTTC.......................................................................................................................................................................................................................................................................................................................................................................2311.0010001
............................................................................................................................................................................................................................................AATCGCTAT---------A--AA---TATTCGCTC-------GAAATG..............................................................................................................................................................................................2711.0011000
..............................................................................................ATAGTAACGTAGCGGACG..........................................................................................................................................................................................................................................................................................................................................................................1811.0010001
.......................................................................................................TAGCGGACGTTCAACTATC-------------------------------------------------------------------.............................................................................................................................................................................................................................................................................................1911.0010001
..............................................................................................ATAGTAACGTAGCGGACGTTC.......................................................................................................................................................................................................................................................................................................................................................................2111.0010001
droYak3
TTCGAC----TCGAAACCG---------CCGATCG---------------G-----GGCATATAAAGCCCGTTGAACGCCAGTCGATGTTAACTATAGTAACGCAGCGGACGTTCAACTATC-------------------------------------------------------------------ATCATGGGTAGGTCCAA-A--------TA--------CAAATTCATATATAGCTAT---------A--AA---TACTCGTACGAAATGCGAAATGCGGAACCACTAAGAATT-----TGC-----------------------C-TTT--------------A-------CAT-----------------------------------TTATA-------------TAATTTCAGTTAAGCTCGGCTTTCTTTCTCTGTT---------AATTGCTGCCTGTGTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................GCAGCGGACGTTCAACTA..................................................................................................................................................................................................................................................................................................................................................................1816.00660000000000
............................................................................................CTATAGTAACGCAGCGGACGTTCAACTA..................................................................................................................................................................................................................................................................................................................................................................2813.00330000000000
......................................................................................................GCAGCGGACGTTCAACTATC-------------------------------------------------------------------.............................................................................................................................................................................................................................................................................................2012.00220000000000
..............................................................................................ATAGTAACGCAGCGGACGTTCAACT...................................................................................................................................................................................................................................................................................................................................................................2512.00220000000000
....................................................................................GATGTTAACTATAGTAACGCAGCGGAC...........................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.....................................................................................................CGCAGCGGACGTTCAACTA..................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
.......................................................................................GTTAACTATAGTAACGCAGCGGACGTT........................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
............................................................................................CTATAGTAACGCAGCGGACGTTC.......................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.........................................................................................TAACTATAGTAACGCAGCGGACG..........................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
droEre2
TTCGAC----TCGAAACCG---------CCGATAG---------------G-----GGCATATAAAGCCCGTTGAACGCCAGTCGATGTTAACTCTAGTAACGTAGCGGACGTTCAACTATC-------------------------------------------------------------------ATCATGGGTAGGTCCAA-A--------TA--------C--------AAATGGCAAT---------A--AA---TACTCGCAC-------GAAATGCGGAACCAGTAAGAATT-----CGC-----------------------C-CAT--------------A-------CGT-----------------------------------TTATA-------------TAATTTCAGTTAAGCTCGGCTTTCTTTCACTGCT---------AATTGCTGCCTGTGTGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................TAGTAACGTAGCGGACGTTCA......................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
...................................................................................................................................................................................................GGTAGGTCCAA-A--------TA--------C--------AAATGG.........................................................................................................................................................................................................................................2111.0010000010
............................................................................................CTCTAGTAACGTAGCGGACGTTCA......................................................................................................................................................................................................................................................................................................................................................................2411.0010000010

Generated: 05/16/2015 at 11:27 PM