ID:

dvi_592

 Coordinate:

scaffold_10322:298814-298964 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.47 -8.4 -8.17

Flybase annnotation

exon [dvir_GLEANR_16469:10]; CDS [Dvir\GJ16049-cds]; intron [Dvir\GJ16049-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GACGCTAATCAACGAGATTCGCCAGGCGGTCAATGAAGCACAGCCAAAAGGTGAACTATTCAAAAAACAAATGACTTGCAACCGGTTTCAACGAGGAATCGTTGATAATCCTCTAAAAGACTAACTCAAATTCTCTCTCCGTTATCAAAGACTTCTTTCATAAGCGCCATCGATTCATGTGCACATAAAGACATTATAAATATATTGTTATACATACAAAGCTAATATGATCAACTACTGTTGTACTCAAC
*******************************************************************************************.((((((((.((((((((........(((...........)))......)))))))).)).))))))..........*********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060676
9xArg_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR060674
9x140_ovaries_total
 V053
head
 M047
female body
 SRR060688
160_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060660
Argentina_ovaries_total
 SRR060672
9x160_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060677
Argx9_ovaries_total
 SRR060665
9_females_carcasses_total
 SRR060673
9_ovaries_total
 V116
male body		 M061
embryo
 SRR060655
9x160_testes_total
 SRR060656
9x160_ovaries_total
 SRR060664
9_males_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060678
9x140_testes_total
 SRR060689
160x9_testes_total
 M027
male body		 SRR060686
Argx9_0-2h_embryos_total
 GSM1528803
follicle cells		 SRR1106729
mixed whole adult body
 M028
head
 SRR060682
9x140_0-2h_embryos_total
 SRR060671
9x160_males_carcasses_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060680
 9xArg_testes_total
 SRR060687
9_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 SRR060668
160x9_males_carcasses_total
...............................................................................................................................................................................................................................AATATGATCAACTACTGTTGT....... 21 0 1 4.00 4 1 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GATATGATCAACTACTGTTGT....... 21 1 1 3.00 3 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CGAGGAATCGTTGATAATCCT........................................................................................................................................... 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................ATGAAGCACAGCCAAAAG......................................................................................................................................................................................................... 18 0 1 2.00 2 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................AAGACTTCTTTCATAAGCGCC................................................................................... 21 0 1 2.00 2 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................AACAAATGACTTGCAACCGGT..................................................................................................................................................................... 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................AAACAAATGACTTGCAACCGG...................................................................................................................................................................... 21 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........AACGAGATTCGCCAGGCGGTC............................................................................................................................................................................................................................ 21 0 1 2.00 2 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................ACTTGCAACCGGTTTCAACGA............................................................................................................................................................. 21 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........ACGAGATTCGCCAGGCGGTCA........................................................................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........ACGAGATTCGCCGGGCGGT............................................................................................................................................................................................................................. 19 1 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................AAAGACTTCTTTCATAAGCGC.................................................................................... 21 0 1 2.00 2 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.ACGCTAATCAACGAGATTCGC..................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........CAACGAGATTCGCCAGGCGGTT............................................................................................................................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TGCAGCCGGTTTCAGCGAGGAA......................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.ACGCTAATCAACGAGATTCG...................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................CATAAGCGCCATCGATTCATG........................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TAAGCGCCATCGATTCATGTGC..................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................CAGGCGGTCAATGAAGCACAGCCAAAAG......................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CGAGACATCGTTGATAATCCC........................................................................................................................................... 21 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........TCAACGAGATTCGCCAGGCGGT............................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GACGCTAATCAACGAGATTCG...................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TCTCTCTCCGTTATCAAAGACTTCT............................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........ACGAGATTCGCCAGGCGGTC............................................................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................AACAGATGACTTGCAACCGGT..................................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CATACAAGGCTAATATGATCA.................. 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTCATGTGCACATAAAGACAT......................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TAAGCGCCATCGATTCATGTG...................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....TAATCAACGAGATTCGCCAAG................................................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TCTCCGTTATCAAAGACTTCT............................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GAGGACTTCTTTCATAAGCGCC................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................AGGCGCCATCGATTCATGTGC..................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................CAACCGGTTTCGGCGAGGAAT........................................................................................................................................................ 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.ACGCTAATCAGCGAGATTCGC..................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................GTGAAGCACAGCCAAAAGGTG...................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................CTCAAATTCTCTCTCCGTTATC......................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................GGGACTTCTTTCATAAGCGC.................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................AACAAATGACTTGCAACCGG...................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CGGGGCATCGTTGATATTCCT........................................................................................................................................... 21 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........CAACGAGATTCGCCAGGCGGTTAT.......................................................................................................................................................................................................................... 24 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TAATCCTCTAAAAGACTAACT............................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........CAACGAGATTCGCCAGGCGGT............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................CGGGCGGTCAATGAAGCACAG................................................................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CGAGGCATCGTTGATATTCCT........................................................................................................................................... 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................CGCCAGGCGGTCAATGAAGCA................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TAATATGATCAACTACTGTTG........ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........TCAACGAGATTCGCCAGGCGGTT............................................................................................................................................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................GCGGTCAATGAAGCACAGCC.............................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TGAAGCACAGCCAAAAGGTGA..................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CGAGGCATCGTTGATGTTCC............................................................................................................................................ 20 3 7 1.00 7 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................CCATCGATTCATGTGCACATG................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................AAGACTCCTTTCATAAGCGCC................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TGAAGCACAGCCAAAGGGTGA..................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........CAACGAGATTCGCCAGGCGGTC............................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................TCAAAGACTTCGTTCATAAGC...................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGTTGATAATCCTCTAAAA..................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................AAATGACTTGCAACCGGTTTC.................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TTCTTTCATAAGCGCCATCGATTCATG........................................................................ 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................ATGAAGCACAGCCAAAAGT........................................................................................................................................................................................................ 19 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TGCAACCGGTTTCAACGAGGA.......................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TCAAATTCTCTCTCCGTTATC......................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................CAATGAAGCACAGCCAAAAGG........................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......AATCAACGAGATTCGCCAGGCGGT............................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TGAAGCACGGCCAAAGGGTGA..................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........AACGAGATTCGCCAGGCGGT............................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TGATATGATCAACTACTGTTG........ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................GGGACTTCTTTCATAAGCGCC................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TACATACAAGGCTGATATGAT.................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CTTGCAACCGGTTTCAACGAG............................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............CGAGATTCGCCAGGCGGTCAT.......................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................CAAATGACTTGCAACCGGTTTC.................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AAAACAAATGACTTGCAACCG....................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CGAGACATCGTTGATAATAC............................................................................................................................................ 20 3 2 1.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......ATCAACGAGATTCGCCAGGCGT.............................................................................................................................................................................................................................. 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........CAACGAGATTCGCCGGGCGG.............................................................................................................................................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TCATAAGCGCCATCGATTCATG........................................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................AACTCAAATTCTCTCTCCGTT............................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TCAAATTCTCTCTCCGTTATCA........................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................CATAAGCGCCATCGATTCGTG........................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................TTCGCCAGGCGGTCAATGAAG..................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................ATGATCAGCTACCGTCGTA...... 19 3 3 1.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................ATACATACAAAGCTAATATG...................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................AGTGAAGCACAGCCAAAGGGTG...................................................................................................................................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................GATTAAATCAAATTCTCTC.................................................................................................................. 19 2 11 0.64 7 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 2 0 0 1 0 0 0 0
.....................................................................................................................AGATTAAATCAAATTCTCT................................................................................................................... 19 2 13 0.62 8 0 0 0 0 3 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 1 1 0 0
...........................................................................................CGAGACATCGTTGATAATGC............................................................................................................................................ 20 3 5 0.60 3 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CGGGTCATCGTTGATAATCC............................................................................................................................................ 20 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CGAGGCATCGTTGATAGTCCTG.......................................................................................................................................... 22 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AGATTAAATCAAATTCTCTC.................................................................................................................. 20 2 4 0.50 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CAAGGCATCGTTGATATTCCT........................................................................................................................................... 21 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................AGTCATGTGCACATAAAGATC.......................................................... 21 3 7 0.43 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0
...........................................................................................CGAGTCATCGTTGATAAT.............................................................................................................................................. 18 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CGAGACATCGTTAATAATCC............................................................................................................................................ 20 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CGAGGCATCGTTGATCTTCC............................................................................................................................................ 20 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CGGGGCATCGTTGATATTCC............................................................................................................................................ 20 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CGAGGCATCGTTAATAATGC............................................................................................................................................ 20 3 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTGATGGTCCTCTAAAGGACT................................................................................................................................. 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................CGAGTCATCGTTGATAATGC............................................................................................................................................ 20 3 9 0.22 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CGAAGATGATCAACTACCGT.......... 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CGGGGAATCGTTGATGATAC............................................................................................................................................ 20 3 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................AAGGACTGACTCAGATTCTCT................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................CGAGGCATCGTTGACATTCC............................................................................................................................................ 20 3 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CGAGGCAGCGTTGATATTCC............................................................................................................................................ 20 3 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................CCAAAGGAGAACTATTCAA............................................................................................................................................................................................ 19 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................CGAGCCATCGTTGATAATGC............................................................................................................................................ 20 3 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TATGATCAGATACCGTTGTA...... 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CGAGGCATCGTTGATATTGC............................................................................................................................................ 20 3 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CTAATATGCTCAACGACAGT.......... 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................ATGATCAGATACTGTCGTA...... 19 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1
....................................................................................................................CAGATTAAATCAAATTCTCTC.................................................................................................................. 21 3 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CGGGTAATCGTTGATATTC............................................................................................................................................. 19 3 15 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CGAGTCATCGTTGATATTC............................................................................................................................................. 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CTGCGATTAGTTGCTCTAAGCGGTCCGCCAGTTACTTCGTGTCGGTTTTCCACTTGATAAGTTTTTTGTTTACTGAACGTTGGCCAAAGTTGCTCCTTAGCAACTATTAGGAGATTTTCTGATTGAGTTTAAGAGAGAGGCAATAGTTTCTGAAGAAAGTATTCGCGGTAGCTAAGTACACGTGTATTTCTGTAATATTTATATAACAATATGTATGTTTCGATTATACTAGTTGATGACAACATGAGTTG
***********************************************************************************.((((((((.((((((((........(((...........)))......)))))))).)).))))))..........******************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR060676
9xArg_ovaries_total
 V116
male body		 SRR060675
140x9_ovaries_total
 SRR060674
9x140_ovaries_total
 M027
male body		 SRR060660
Argentina_ovaries_total
 M047
female body
 SRR060655
9x160_testes_total
 M028
head
 SRR060679
140x9_testes_total
 SRR060673
9_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060658
140_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060678
9x140_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060688
160_ovaries_total
 SRR060687
9_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060681
Argx9_testes_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060683
160_testes_total
 SRR060667
160_females_carcasses_total
 SRR060664
9_males_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060657
140_testes_total
 SRR060672
9x160_females_carcasses_total
 SRR060663
160_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 GSM1528803
follicle cells		 SRR060654
160x9_ovaries_total
 SRR060656
9x160_ovaries_total
 SRR060680
 9xArg_testes_total
 SRR060689
160x9_testes_total
 SRR060669
160x9_females_carcasses_total
 M061
embryo
 SRR060661
160x9_0-2h_embryos_total
 SRR060671
9x160_males_carcasses_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR1106729
mixed whole adult body
 V053
head
............................................................................................................................................................CAGTATTCGCGATGGCTAA............................................................................ 19 3 7 42.29 296 0 110 0 0 78 0 0 0 75 5 0 0 0 0 0 1 0 6 1 0 3 0 0 2 0 4 0 3 2 1 0 0 0 0 0 0 1 2 1 1 0 0 0
.............................................................................................................................................................AGTATTCGCGATGGCTAA............................................................................ 18 2 3 24.00 72 0 17 0 0 0 0 6 0 0 3 0 0 4 3 0 9 0 5 7 2 4 5 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 1 1 0 1 0 0
..............................................................................................................................................ATTGTTCCTGAAGAATGTAT......................................................................................... 20 3 10 9.80 98 0 9 1 0 0 0 2 0 1 3 0 0 1 3 0 10 0 11 3 1 8 7 0 6 8 1 5 0 0 7 1 0 0 0 0 0 6 0 0 3 1 0 0
.....................................................................................................................................AGAGAGGCAATAGTTTCTGAA................................................................................................. 21 0 1 5.00 5 1 0 0 0 0 3 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TCTGATTGAGTTTAAGAGAGA................................................................................................................. 21 0 1 4.00 4 0 0 0 0 0 2 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................AGGCAATAGTTTCTGAAGAAA............................................................................................. 21 0 1 4.00 4 1 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................CTGAAGAAAGTATTCGCGGTA................................................................................. 21 0 1 4.00 4 0 0 1 0 0 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................AGTATTCGCGATGGCTAAC........................................................................... 19 3 17 3.24 55 0 47 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 2 1 0 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TTAAGAGAGAGGCAATAGTTT...................................................................................................... 21 0 1 3.00 3 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................GTTGGCCAAAGTTGCTCCTTA........................................................................................................................................................ 21 0 1 3.00 3 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................GGAGGTTTTCTGGTTGAGTTT......................................................................................................................... 21 2 1 3.00 3 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TAGCTAAGTACACGTGTATTT.............................................................. 21 0 1 3.00 3 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GTAGCTAAGTACACGTGTATT............................................................... 21 0 1 3.00 3 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................ATTAGGAGATTTTCTGATTGA............................................................................................................................. 21 0 1 3.00 3 1 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGCGGTAGCTAAGTACACGTG................................................................... 21 0 1 3.00 3 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................GGTAGCTAAGTACACGTGTAT................................................................ 21 0 1 3.00 3 0 0 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................GAGAGAGGCAATAGTTTCTGA.................................................................................................. 21 0 1 3.00 3 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................CGGTTTTCCACTTGATAAGTT............................................................................................................................................................................................ 21 0 1 3.00 3 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................GGAGATTTTCTGGTTGAGTTT......................................................................................................................... 21 1 1 3.00 3 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................AGTATTCGCGGTAGCTAAGTA......................................................................... 21 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................AGGAGATTTTCTGATTGAGTT.......................................................................................................................... 21 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................TCGTGTCGGTTTTCCACTTGA.................................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................GTCCGCCAGTTACTTCGTGTC................................................................................................................................................................................................................ 21 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TGGCCAAAGTTGCTCCTTAGC...................................................................................................................................................... 21 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AGAGAGGCAATAGTTTCCGAA................................................................................................. 21 1 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................CTGAACGTTGGCCAAAGTTGC.............................................................................................................................................................. 21 0 1 2.00 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TTTTCCACTTGATAAGTTTTT......................................................................................................................................................................................... 21 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GCGGTAGCTAAGTACACGTGT.................................................................. 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GAGGCAATAGTTTCTGAAGAAA............................................................................................. 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................GAAAGTATTCGCGGTAGCTAA............................................................................ 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................CGGTAGCTAAGTACACGTGTA................................................................. 21 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TTACTGAACGTTGGCCAAAGT................................................................................................................................................................. 21 0 1 2.00 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................CCAGTTGCTTCGTGTCGGTTT........................................................................................................................................................................................................... 21 1 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GAGGCAATAGTTTCTGAAGAA.............................................................................................. 21 0 1 2.00 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................TTTAAGAGAGAGGCAATAGTT....................................................................................................... 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TGTATGTTTCGATTATACTAG................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TCGCGGTAGCTAAGTACACGT.................................................................... 21 0 1 2.00 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TAGTTGATGACAACATGAGTT. 21 0 1 2.00 2 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................AGAAAGTATTTGCGGTAGCTAA............................................................................ 22 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TTAGGAGATTTTCTGATTGAG............................................................................................................................ 21 0 1 2.00 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................AGTACACGTGTATTTCTGTAA........................................................ 21 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................TGTCGGTTTTCCACTTGATAA............................................................................................................................................................................................... 21 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TTCGATTATACTAGTTGATGA............ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................GAGAGGCAATAGTTTCTGAAG................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................TAGCAACTATTAGGAGATTTT..................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................GCTGTCCGCCAGTTACTTCGT................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................CTGAAGAAAGTGTTCGCGGTG................................................................................. 21 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................AGAAAGTGTTCGCGGTAGC............................................................................... 19 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................GGTCCGCCGGTTACTTCGTGT................................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................GTTTAAGAGAGAGGCAATAGTT....................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................GCGGTCCGCCAGTTACTTC..................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................TCCACTTGATAAGTTTTTTGT...................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................ACTGAACGTTGGCCAAAGTTG............................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
CTGCGATTAGTTGCTCTAAGC...................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................AGATTTTCTGGTTGAGTTTAA....................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................AGTTGATGACAACATGAGTTG 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
CTGCGGTTAGTTGCTCTGAGC...................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CAATATGTGTGTTTCGATTAT........................ 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................CCAGTTACTTCGTGTCGGTTT........................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TACTGGACGTTGGCCAAAGTT................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..GCGGTTAGTTGCTCTGAGC...................................................................................................................................................................................................................................... 19 2 2 1.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................CGTTGGCCAAAGTTGCTCCTT......................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................TGAACGTTGGCCAAAGTTGCT............................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................TTTCCACTTGATAAGTTTTTT........................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TACTGAACGTTGGCCAAAGTT................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GCCAAAGTTGCTCCTTAGCAA.................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................ACGTTGGCCAAAGTTGCTCC........................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....GATTAGTTGCTCTAAGCGGTCC................................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................AGGAGGTTTTCTGGTTGAGTT.......................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TATTCGCGGTAGCTAAGTACA....................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....GATTAGTTGCTCTAAGCGGTC.................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................GCGGTCCGCCAGTTACTTCGT................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CAATATGTATGTTTCGATTA......................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................AAGAAAGTATTCGCGGTAGC............................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................AAGTATTCGCGGTAGCTAA............................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................TGTCGTTTTTCCACTTGATAA............................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TTAGCAACTATTAGGAGATTT...................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TTAGTTGATGACAACATGAGT.. 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................AGCGGTCCGCCAGTTACTTCG.................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................GCTAAGTACGCGTGTATTTCT............................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................ATTATACTAGTTGGTGACGAC........ 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TAGCTGAGTACACGTGTATTT.............................................................. 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............CTGAGGGGTCCGCCAGTT.......................................................................................................................................................................................................................... 18 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
TTGCGATTAGTTGCTCTAAGC...................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............GCTCTGAGCGGTCCGCCAGTT.......................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................GCCAGTTACTTCGTGTCGGT............................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................CAGTTACTTCGTGTCGGTTT........................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................GGCAATAGTTTCTGAAGAAAG............................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................TAGCAACTATTAGGAGGTTTT..................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................AGGCAATAGTTTCTGGAGAAA............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TCTGGTTGAGTTTGAGAGAGA................................................................................................................. 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TTACTGCACGTTGGCCAAAGT................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TTTCTGATTGAGTTTAAGAGA................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................GTGTCGGTTTTCCACTTGGTA................................................................................................................................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CCACTTGATAAGTTTTTTGTT..................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................AGAGAGAGGCAATAGTTTCTGA.................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CACTTGATGAGTTTTTTGTTT.................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................GGTCCGCCAGTTACTTCGTGT................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................CAGTATTCGCGGTGGCTAA............................................................................ 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................AGCAACTATTAGGAGGTTTTC.................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TAGTTGGTGACAACATGAGT.. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................AGTTTAAGAGAGAGGCAATAG......................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TTCTGGTTGAGTTTAAGAGAG.................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................ATTCGCGGTAGCTAAGTACAC...................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................TTTTTGTTTACTGAACGTTGG........................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................GTGTCGGTTTTCCACTTGATA................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................CTTAGCAACTATTAGGAGATT....................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TGTTTCGATTATACTAGTTGG............... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TCGATTATACTAGTTGGTGACA.......... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................TTTACTGAACGTTGGCCAAAG.................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TACTGAACGTTGGCCCAAGTT................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............CTAAGCGGTCCGCCAGTTACT....................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TATGTTTCGATTATACTAGTTGA............... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AACTATTAGGAGATTTTCTGG................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............TCTAAGCGGTCCGCCAGTTAC........................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TTCGATTATGCTAGTTGATGA............ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................GAAAGTATTCGCGGTAGCTA............................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TTGGCCAAAGTTGCTCCTTAG....................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CCACTTGATAAGTTTTTTGTTTACTG................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TAGGAGATTTTCTGATTGAGT........................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TTAGCAACTATTAGGAGGTTT...................................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CGATTATACTAGTTGATGACG.......... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GTGTATTTCTGTAATATTTAT................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................CGGTAGCTAAGTACACGTGTG................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................AGTTGGTGACAACATGAGTTG 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................GCAACTGTTAGGAGATTTTCTGG................................................................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................AGTATTCGCGATAGCTAAC........................................................................... 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................TCCGCCAGTTTCATCGTG.................................................................................................................................................................................................................. 18 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................................TTGTATTCGCGGTAGCTA............................................................................. 18 2 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................GTGCCAAAGTTGCTCCTAA........................................................................................................................................................ 19 3 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TTGAGTTTTAGAGAGAGGAT............................................................................................................. 20 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................TTGTTTGCTGCAAGTTGGC....................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...........................................................................................................TAGGAGATTTACTGGTTCA............................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................ACCAACTAGTAGGAGAGTT...................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_10322:298764-299014 - dvi_592 GACGCTAATCAACGAGATTCGCCAGGCGGTCAATGAAGCACAGCCAAAAGGTGAACTATT--CAAA----AAACAAATG--ACTTG----------------------------------------CAACCGGTTT------------------------------------------CAACGAGGA----ATCG---TTGATAATCCTCTAAAAGACTAACT--C----AAATTCT------CT---CTC----C-GTTATC----A--AAGACT-----------TCTT--T-----CATAAGCG---CCATCGATTCATG--------TGCACATA--AAGACAT------TATAA-ATA-TATTGTTA-----------------TA----CATAC-----AAAGCTAAT--ATGA-----------TCAAC---------------------------------------------------------------TAC--------TGTTGT-ACTCAA--------C-
droMoj3 scaffold_6680:2335335-2335694 - AACGCTGATCAATGAGATTCGCCAGGCGGTCAATGAAGCACAGCCAAAAGGTGAAATAACA---ATCAAATA-CTGATG---CTCGAACCCGGTTCGATTATCTATC--------------CTAAACAAAAAACAAAACT-AACGCAAAT--------TCTCT-------------------------------------------------------------------------A------TC---CCA---ATTATCCACAAACAAAA--ACT-----------ATTA--TATTGTTG--AGAG---GCAGCTATTCATG--------TGCACATA--AAGACAT---TC-TCTCT-GTT-TGCTGTATACTTATCGAATTGCTA-AAATG-AAATGAAA--AACAATAATGCTAAATACTGTTATACTCAACTGTTACATTTAACTGTTATATTGAACGTTAATACGTGTGCCATTTCATTGAACGTATTCCTAATA--------CTGTTAT-ACTCAA--------C-
droGri2 scaffold_15110:226368-226631 + GACGCTGATCAATGAGATTCGCCAGGCGGTCAACGAAGCGCAGCCAAAAGGTGAACTATT--CAAA----CA-TAAATT---CCCG----------------------------------------CAACCGGTTACAACAATTACGAGT--------CGTAGAT----TA---TCT---GCTAG------AACT---TGAAC-------CAGAACACTAACC--A----AAATTCA------AC---CCA----C-TTCAAG----AAAA--ACT-----------ATTA--T-----CGAAAGCGACATCATCGTTTCATG--------TGCACATA--AAAATAT---GT-TATAC-GTT-TCTTGTTT-----------------TA----CATGC-----CATACTGTT--CTA-----------------------------------------------------------------------------------------------AT-AGCCATATATATTAC-
droWil2 scf2_1100000004729:2096774-2096839 - GACATTGATCAATGAGATACGCCAGGCGGTAAACGAAGCGCAGCCTAAAGGTGATAAATATACAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XR_group6:12489865-12490168 - GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGTA-----TAACCC----------------------------------------------------------AAACCA--TAACCAAAAC-AGAATAATCATCTGTAACTCTGAATCTA--GTAACTTTAGCCAGAA----TCCG---TAGACTCTC---CAGAA--CTAACCACCCAGTAGAA--A-TCCA-AT---CA----AT-CCCAAGA-AACGACAGACGTACTCGTACTCCGTATCT-----CAT------GCCAATCATCACATT-----------TCATACACAGATCTGTTGTACATATTGTT-AACTGTTT----------------CTA---AAAG-CA-AACT--ACTAAT--CGAA-------------------------------------------------------------------------------AGCTGT-ATTTTGTTGTGAACCAT--------AC
droPer2 scaffold_33:509369-509420 - GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13337:531458-531516 - GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAGGCGCAGCCCAAAGGTGAACTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000395155:229343-229401 + GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAGGCGCAGCCCAAAGGTGAACTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302441:1233646-1233907 + GACGCTGATCAATGAGATCCGCCAGGCGGTGAACGAAGCCCAGCCCAAAGGTGAACTATGACCAACCAA-------ATCAAACC----------------------------------------ACCAACCAA---TGCC-AGCACAAAC--------CTCCGAATCTCTC---TCTCTAGCCAAAATCAGGCCGTAGTAGAC---------------TAACC--CCAGTAGAA----AC-GATC----------------------------------------------------------------ATCATCATCTCATTACTCCACAC--TCTCA--CAGAACT---GTACATAT-GTTTATCTGTTT-----------------GG----AAGCCCAA--AAAACTAAT--CAAA-------------------------------------------------------------------------------CA-TATTATTCTGTTAT-AACCAT--------A-
droFic1 scf7180000454105:831272-831531 - GACGCTGATCAACGAAATCCGCCAGGCGGTGAACGAAGCGCAGCCCAAAGGTGAACTATGCCCCACCAAC--------CAA-----AACCCAGA-------------AACCAAAAACGAATCCAACCAA---------CA-AGCACAATC--------CTCCGAA----TCGAATCTCTAGCAAG------ACCG---TAGAC---------------TAACC--C--GTAGATCAA-TC-GATCAATCA----------------------------------------A--T-----CAACCGCA---CCATCACCTCATT-----------CCATA--CAGATCT---GTACATAC-GTT-TACTGTTC-----------------AA-----AGA-----------TAAT--CGAA-------------------------------------------------------------------------------C-CTGTTATTCAGTTAT-AACCA-----------
droEle1 scf7180000491249:2903111-2903169 + GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAGGCCCAGCCCAAAGGTGAACTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302428:9272125-9272183 - GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGTGAACTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415857:263576-263856 - GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGTGAACTATGACCAAC--------------------------------------------------------CAACCAACCAACCAGACC-AGCACAATC--------CTCCGAATCTTTC---TCTTTAGCCAG------AACG---TAGAC---------------TAACC--ATAGTAGTTCGAACCTTTTC---CCAACGATCCCCGAAAAAACGAAAGACCTA---------CATA--T-----CAT------GCCCATCATCTCATT-----------TCATA--CAGATCT---GTACATAT-GTT-TACTGTTC-----------------TA----AAGGCCTA--AAAACTAAT--CGAA-------------------------------------------------------------------------------CACTGTTATTTCGTTAT-AACCAT----------
droEug1 scf7180000409466:233206-233264 - GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAGGCCCAGCCCAAAGGTGAACTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr3L:2509158-2509413 - GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGTGAACTATGACCAAT-------------------------------------------------------CCAACCAACCAACTAGACC-AGCACAATC--------CTCCGAT----TC---TCTCTAGCAAG------ACCG---TAGAC---------------TAACC--C--GTAGATCGA------AC---CCA---ATCCCCAAGAGAGCAAAAGA-------------CGTA--T-----CAT------GATCATCATCTCATT-----------TCATA--CAGATCT---GTACATAT-GTTTTACTGTTC-----------------AA----AAGACTTA-CTTAACTAAT--CCAA-------------------------------------------------------------------------------CACCGTTGTTTCGT--------------------
droSim2 3l:2396944-2397207 - dsi_28387 GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGTGAACTATGACCATC--------------------------------------------------------CAACCAACCAACTAGACC-AGCACAATC--------CTCCGAT----TC---TCTCTAGCAAG------ACCG---TAGAC---------------TAACC--C--GTAGATCGA------TC---CCA---ATCCCCAAGAGAGCAAAATA-------------CGTA--T-----CAT------GATCATCATCTCATT-----------TCATA--CAGATCT---GTACATAT-GTT-TACTGTTC-----------------AA----AAGACTTA-CTTAACTAAT--CCAA-------------------------------------------------------------------------------CACCGTTGTTTCGTTAT-AACCAT--------T-
droSec2 scaffold_2:2530419-2530678 - GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGTGAACTATGACCATC--------------------------------------------------------TAACCAACCAACTAGACC-AGCACAATC--------CTCCGAT----TC---TCTCTAGCAAG------ACCG---TAGAC---------------TAACC--C--GTAGATCGA------TC---CCA---ATCCCCAAGAGAGCAAAATA-------------CGTA--T-----CAT------GATCATCATCTCATT-----------TCATA--CAGATCT---GTACATAT-GTT-TACTGTTC-----------------AA----CAGAC-----TTAACTAAT--CCAA-------------------------------------------------------------------------------CACCGTTGTTTCGTTAT-AACCAT--------T-
droYak3 3L:9431699-9431757 + GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGTGAACTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4784:2521837-2522103 - der_700 GACGCTGATCAACGAGATCCGCCAGGCGGTGAATGAAGCACAGCCCAAAGGTGAACTATGACCAACCAAC--------CAA----------------------------------------CCAACCAACCAACTAGACC-AGCACAATC--------CTCCGAT----TC---TCTCTAGCCAG------ACCG---TAGAC---------------TAACC--C--GTAGATCGA------TC---CCA----CCCCCAAAAGAACAAAAGA-------------CGTA--T-----CAT------GATCATCATCGCATT-----------TCATA--CAGATCT---GTACATAT-GTT-TACTGTTC-----------------CA----AAGAC-----TTAACTAAT--CCAA-------------------------------------------------------------------------------CACCGTTATTTCGTTAT-AACCAT--------T-

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GACGCTAATCAACGAGATTCGCCAGGCGGTCAATGAAGCACAGCCAAAAGGTGAACTATT--CAAA----AAACAAATG--ACTTG----------------------------------------CAACCGGTTT------------------------------------------CAACGAGGA----ATCG---TTGATAATCCTCTAAAAGACTAACT--C----AAATTCT------CT---CTC----C-GTTATC----A--AAGACT-----------TCTT--T-----CATAAGCG---CCATCGATTCATG--------TGCACATA--AAGACAT------TATAA-ATA-TATTGTTA-----------------TA----CATAC-----AAAGCTAAT--ATGA-----------TCAAC---------------------------------------------------------------TAC--------TGTTGT-ACTCAA--------C-SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................AAT--ATGA-----------TCAAC---------------------------------------------------------------TAC--------TGTTGT-................2114.004000000000000000100000000001000000000001000000000000000000000010
.....................................................................................................................................................................................CGAGGA----ATCG---TTGATAATCCT....................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000011000000000000000000000000000000000000
................................ATGAAGCACAGCCAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002000000000010000000000000001000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................AAGACT-----------TCTT--T-----CATAAGCG---CC.............................................................................................................................................................................................................................2112.002000000000000000000000000010000010000000000000000000000000000000
.......................................................................AACAAATG--ACTTG----------------------------------------CAACCGGT...............................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000200000000000000000000000000000000000000
......................................................................AAACAAATG--ACTTG----------------------------------------CAACCGG................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000001000010000000000000000000000000000000
..........AACGAGATTCGCCAGGCGGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000001000000000000100000000000000000000000000000000000000
.................................................................................ACTTG----------------------------------------CAACCGGTTT------------------------------------------CAACGA.............................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000110000000000000000000000000000000000000
...........ACGAGATTCGCCAGGCGGTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000000000000000002000000000000000000000000
...........................................................................................................................................................................................................................................................................A--AAGACT-----------TCTT--T-----CATAAGCG---C..............................................................................................................................................................................................................................2112.002001000000000000000000001000000000000000000000000000000000000000
.ACGCTAATCAACGAGATTCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
.........CAACGAGATTCGCCAGGCGGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000001000000000000000000000000000000000000
.ACGCTAATCAACGAGATTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000001000000000000000000000000
...........................................................................................................................................................................................................................................................................................................CATAAGCG---CCATCGATTCATG--------..........................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................TAAGCG---CCATCGATTCATG--------TGC.......................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
......................CAGGCGGTCAATGAAGCACAGCCAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000100000000000000000000000000000000000
........TCAACGAGATTCGCCAGGCGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
GACGCTAATCAACGAGATTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................TCT------CT---CTC----C-GTTATC----A--AAGACT-----------TCT...................................................................................................................................................................................................................................................2511.001000000000000000000000000000001000000000000000000000000000000000
...........ACGAGATTCGCCAGGCGGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000010000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TTCATG--------TGCACATA--AAGACAT------...................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................TAAGCG---CCATCGATTCATG--------TG........................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................................T---CTC----C-GTTATC----A--AAGACT-----------TCT...................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
.............................................................................................................................................................................................................................CT--C----AAATTCT------CT---CTC----C-GTTATC----..........................................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
.......................................................................AACAAATG--ACTTG----------------------------------------CAACCGG................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................................................................................TAATCCTCTAAAAGACTAACT--....................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.........CAACGAGATTCGCCAGGCGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000001000000000000000000000000000000000000000000000000000
...................CGCCAGGCGGTCAATGAAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TAAT--ATGA-----------TCAAC---------------------------------------------------------------TAC--------TGTTG..................2111.001000000000000000000000000010000000000000000000000000000000000000
........TCAACGAGATTCGCCAGGCGGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000001000000000000000000000000000000000000
.........................GCGGTCAATGAAGCACAGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000100000000000000000000000000000000000
.................................TGAAGCACAGCCAAAAGGTGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000001000000000000000000000000
......................................................................................................................................................................................................................................................................................................................CCATCGATTCATG--------TGCACATG--................................................................................................................................................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
.........CAACGAGATTCGCCAGGCGGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000001000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................CG---TTGATAATCCTCTAAAA..............................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................AAATG--ACTTG----------------------------------------CAACCGGTTT------------------------------------------C..................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................T-----------TCTT--T-----CATAAGCG---CCATCGATTCATG--------..........................................................................................................................................................................................................2711.001000000000000000000000000000000010000000000000000000000000000000
................................ATGAAGCACAGCCAAAAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000001000000000000000000000000000000000000000000000000000
....................................................................................TG----------------------------------------CAACCGGTTT------------------------------------------CAACGAGGA----......................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
..............................................................................................................................................................................................................................T--C----AAATTCT------CT---CTC----C-GTTATC----..........................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..............................CAATGAAGCACAGCCAAAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
......AATCAACGAGATTCGCCAGGCGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000001000000000000000000000000000000000000000000000000000
..........AACGAGATTCGCCAGGCGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000010000000000000000000000000000000000000000000000000000
..................................................................................CTTG----------------------------------------CAACCGGTTT------------------------------------------CAACGAG............................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
............CGAGATTCGCCAGGCGGTCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
.........................................................................CAAATG--ACTTG----------------------------------------CAACCGGTTT------------------------------------------C..................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000001000000000000000000000000000000000000
.................................................................A----AAACAAATG--ACTTG----------------------------------------CAACCG.................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.......ATCAACGAGATTCGCCAGGCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................T-----CATAAGCG---CCATCGATTCATG--------..........................................................................................................................................................................................................2211.001000000000000000000000000100000000000000000000000000000000000000
...........................................................................................................................................................................................................................AACT--C----AAATTCT------CT---CTC----C-GTT.................................................................................................................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
..............................................................................................................................................................................................................................T--C----AAATTCT------CT---CTC----C-GTTATC----A--.......................................................................................................................................................................................................................................................................2211.001000000000000000000000000000010000000000000000000000000000000000
.................TTCGCCAGGCGGTCAATGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000100000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................A-----------------TA----CATAC-----AAAGCTAAT--ATG..................................................................................................................2011.001000000000000000000000000001000000000000000000000000000000000000
droMoj3
AACGCTGATCAATGAGATTCGCCAGGCGGTCAATGAAGCACAGCCAAAAGGTGAAATAACA---ATCAAATA-CTGATG---CTCGAACCCGGTTCGATTATCTATC--------------CTAAACAAAAAACAAAACT-AACGCAAAT--------TCTCT-------------------------------------------------------------------------A------TC---CCA---ATTATCCACAAACAAAA--ACT-----------ATTA--TATTGTTG--AGAG---GCAGCTATTCATG--------TGCACATA--AAGACAT---TC-TCTCT-GTT-TGCTGTATACTTATCGAATTGCTA-AAATG-AAATGAAA--AACAATAATGCTAAATACTGTTATACTCAACTGTTACATTTAACTGTTATATTGAACGTTAATACGTGTGCCATTTCATTGAACGTATTCCTAATA--------CTGTTAT-ACTCAA--------C-SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................................................................................................................................................................................................................C-TCTCT-GTT-TGCTGTATACTTATCGA........................................................................................................................................................2611.001100000
............................GTCAATGAAGCACAGCCAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.................................................................................................................................................................................................................................................................................................................AG---GCAGCTATTCATG--------TGCAC.....................................................................................................................................................................................................2011.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................TGCTA-AAATG-AAATGAAA--A...............................................................................................................................19130.081100000
droGri2
GACGCTGATCAATGAGATTCGCCAGGCGGTCAACGAAGCGCAGCCAAAAGGTGAACTATT--CAAA----CA-TAAATT---CCCG----------------------------------------CAACCGGTTACAACAATTACGAGT--------CGTAGAT----TA---TCT---GCTAG------AACT---TGAAC-------CAGAACACTAACC--A----AAATTCA------AC---CCA----C-TTCAAG----AAAA--ACT-----------ATTA--T-----CGAAAGCGACATCATCGTTTCATG--------TGCACATA--AAAATAT---GT-TATAC-GTT-TCTTGTTT-----------------TA----CATGC-----CATACTGTT--CTA-----------------------------------------------------------------------------------------------AT-AGCCATATATATTAC-SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................GGTCAACGAAGCGCAGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110
droWil2
GACATTGATCAATGAGATACGCCAGGCGGTAAACGAAGCGCAGCCTAAAGGTGATAAATATACAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................AACGAAGCGCAGCCTAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001
...............................AACGAAGCGCAGCCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.............................TAAACGAAGCGCAGCCTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
dp5
GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGTA-----TAACCC----------------------------------------------------------AAACCA--TAACCAAAAC-AGAATAATCATCTGTAACTCTGAATCTA--GTAACTTTAGCCAGAA----TCCG---TAGACTCTC---CAGAA--CTAACCACCCAGTAGAA--A-TCCA-AT---CA----AT-CCCAAGA-AACGACAGACGTACTCGTACTCCGTATCT-----CAT------GCCAATCATCACATT-----------TCATACACAGATCTGTTGTACATATTGTT-AACTGTTT----------------CTA---AAAG-CA-AACT--ACTAAT--CGAA-------------------------------------------------------------------------------AGCTGT-ATTTTGTTGTGAACCAT--------ACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........CAACGAGATCCGCCAGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100000
droPer2
GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAGGCGCAGCCCAAAGGTGAACTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......GATCAACGAGATCCGCCAGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...............GATCCGCCAGGCGGTGAACGAGGCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
droBip1
GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAGGCGCAGCCCAAAGGTGAACTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GACGCTGATCAATGAGATCCGCCAGGCGGTGAACGAAGCCCAGCCCAAAGGTGAACTATGACCAACCAA-------ATCAAACC----------------------------------------ACCAACCAA---TGCC-AGCACAAAC--------CTCCGAATCTCTC---TCTCTAGCCAAAATCAGGCCGTAGTAGAC---------------TAACC--CCAGTAGAA----AC-GATC----------------------------------------------------------------ATCATCATCTCATTACTCCACAC--TCTCA--CAGAACT---GTACATAT-GTTTATCTGTTT-----------------GG----AAGCCCAA--AAAACTAAT--CAAA-------------------------------------------------------------------------------CA-TATTATTCTGTTAT-AACCAT--------A-SizeHit CountTotal NormTotal
No Reads
droFic1
GACGCTGATCAACGAAATCCGCCAGGCGGTGAACGAAGCGCAGCCCAAAGGTGAACTATGCCCCACCAAC--------CAA-----AACCCAGA-------------AACCAAAAACGAATCCAACCAA---------CA-AGCACAATC--------CTCCGAA----TCGAATCTCTAGCAAG------ACCG---TAGAC---------------TAACC--C--GTAGATCAA-TC-GATCAATCA----------------------------------------A--T-----CAACCGCA---CCATCACCTCATT-----------CCATA--CAGATCT---GTACATAC-GTT-TACTGTTC-----------------AA-----AGA-----------TAAT--CGAA-------------------------------------------------------------------------------C-CTGTTATTCAGTTAT-AACCA-----------SizeHit CountTotal NormTotal
No Reads
droEle1
GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAGGCCCAGCCCAAAGGTGAACTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGTGAACTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGTGAACTATGACCAAC--------------------------------------------------------CAACCAACCAACCAGACC-AGCACAATC--------CTCCGAATCTTTC---TCTTTAGCCAG------AACG---TAGAC---------------TAACC--ATAGTAGTTCGAACCTTTTC---CCAACGATCCCCGAAAAAACGAAAGACCTA---------CATA--T-----CAT------GCCCATCATCTCATT-----------TCATA--CAGATCT---GTACATAT-GTT-TACTGTTC-----------------TA----AAGGCCTA--AAAACTAAT--CGAA-------------------------------------------------------------------------------CACTGTTATTTCGTTAT-AACCAT----------SizeHit CountTotal NormTotal
No Reads
droEug1
GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAGGCCCAGCCCAAAGGTGAACTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGTGAACTATGACCAAT-------------------------------------------------------CCAACCAACCAACTAGACC-AGCACAATC--------CTCCGAT----TC---TCTCTAGCAAG------ACCG---TAGAC---------------TAACC--C--GTAGATCGA------AC---CCA---ATCCCCAAGAGAGCAAAAGA-------------CGTA--T-----CAT------GATCATCATCTCATT-----------TCATA--CAGATCT---GTACATAT-GTTTTACTGTTC-----------------AA----AAGACTTA-CTTAACTAAT--CCAA-------------------------------------------------------------------------------CACCGTTGTTTCGT--------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......GATCAACGAGATCCGCCAGGCGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2418.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CAACGAGATCCGCCAGGCGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100000001000
...................CGCCAGGCGGTGAACGAAGCAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CGCCAGGCGGTGAACGAAGCACAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TGATCAACGAGATCCGCCAGGCGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000
..........................CGGTGAACGAAGCACAGCCCAAAGGTGAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GGTGAACGAAGCACAGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
.....TGATCAACGAGATCCGCCAGGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......ATCAACGAGATCCGCCAGGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.................................................................................................................................................................................................CG---TAGAC---------------TAACC--C--GTAGATCG.........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
......................CAGGCGGTGAACGAAGCACAGCCCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000
..............AGATCCGCCAGGCGGTGAACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GCCAGGCGGTGAACGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TCCGCCAGGCGGTGAACGAAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TCAACGAGATCCGCCAGGCGGTGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.......................AGGCGGTGAACGAAGCACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................T-GTTTTACTGTTC-----------------AA----AAGACTTA-CTTAAC...........................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CAACGAGATCCGCCAGGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TCAACGAGATCCGCCAGGCGGTGAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CGCCAGGCGGTGAACGAAGCACAGCCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CTGATCAACGAGATCCGCCAGGCGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.........CAACGAGATCCGCCAGGCGGTGAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................AAGCACAGCCCAAAGGTGAACTATGACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TCCGCCAGGCGGTGAACGAAGCACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................AAGA-------------CGTA--T-----CAT------GATCATCATCT......................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................................ACGAAGCACAGCCCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................CATA--CAGATCT---GTACATAT-GT...........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................AACGAAGCACAGCCCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
droSim2
GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGTGAACTATGACCATC--------------------------------------------------------CAACCAACCAACTAGACC-AGCACAATC--------CTCCGAT----TC---TCTCTAGCAAG------ACCG---TAGAC---------------TAACC--C--GTAGATCGA------TC---CCA---ATCCCCAAGAGAGCAAAATA-------------CGTA--T-----CAT------GATCATCATCTCATT-----------TCATA--CAGATCT---GTACATAT-GTT-TACTGTTC-----------------AA----AAGACTTA-CTTAACTAAT--CCAA-------------------------------------------------------------------------------CACCGTTGTTTCGTTAT-AACCAT--------T-SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................AAT--CCAA-------------------------------------------------------------------------------CACCGTTGTTTCGT....................2111.00101000000000000000
..........................................................TGACCATC--------------------------------------------------------CAACCAACCAACTAGAC..........................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000001000
..................CCGCCAGGCGGTGAACGAAGCACAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
droSec2
GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGTGAACTATGACCATC--------------------------------------------------------TAACCAACCAACTAGACC-AGCACAATC--------CTCCGAT----TC---TCTCTAGCAAG------ACCG---TAGAC---------------TAACC--C--GTAGATCGA------TC---CCA---ATCCCCAAGAGAGCAAAATA-------------CGTA--T-----CAT------GATCATCATCTCATT-----------TCATA--CAGATCT---GTACATAT-GTT-TACTGTTC-----------------AA----CAGAC-----TTAACTAAT--CCAA-------------------------------------------------------------------------------CACCGTTGTTTCGTTAT-AACCAT--------T-SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................AGCAAG------ACCG---TAGAC---------------TAACC--C--GTAGAT...........................................................................................................................................................................................................................................................................................................2711.0010010
GACGCTGATCAACGAGATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.........CAACGAGATCCGCCAGGCGGTGAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
droYak3
GACGCTGATCAACGAGATCCGCCAGGCGGTGAACGAAGCACAGCCCAAAGGTGAACTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............GATCCGCCAGGCGGTGAACGAAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24120.0020000000000020
.....TGATCAACGAGATCCGCCAGGCGGTGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28116.0016000000000016
..........AACGAGATCCGCCAGGCGGTGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.00400000000004
......GATCAACGAGATCCGCCAGGCGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
........TCAACGAGATCCGCCAGGCGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
......GATCAACGAGATCCGCCAGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
droEre2
GACGCTGATCAACGAGATCCGCCAGGCGGTGAATGAAGCACAGCCCAAAGGTGAACTATGACCAACCAAC--------CAA----------------------------------------CCAACCAACCAACTAGACC-AGCACAATC--------CTCCGAT----TC---TCTCTAGCCAG------ACCG---TAGAC---------------TAACC--C--GTAGATCGA------TC---CCA----CCCCCAAAAGAACAAAAGA-------------CGTA--T-----CAT------GATCATCATCGCATT-----------TCATA--CAGATCT---GTACATAT-GTT-TACTGTTC-----------------CA----AAGAC-----TTAACTAAT--CCAA-------------------------------------------------------------------------------CACCGTTATTTCGTTAT-AACCAT--------T-SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....TGATCAACGAGATCCGCCAGGCGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000002
.........CAACGAGATCCGCCAGGCGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
................................ATGAAGCACAGCCCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
..............................................................CAACCAAC--------CAA----------------------------------------CCAACCAACCAACT..............................................................................................................................................................................................................................................................................................................................................................................................................2560.1711000000
...................................................................AAC--------CAA----------------------------------------CCAACCAACCAACT..............................................................................................................................................................................................................................................................................................................................................................................................................2080.1310100000
...............................................................AACCAAC--------CAA----------------------------------------CCAACCAACC..................................................................................................................................................................................................................................................................................................................................................................................................................20200.0511000000

Generated: 05/19/2015 at 10:44 AM