dvi_578

Name	Class	Family	Strand
(CAA)n	Simple_repeat	Simple_repeat	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CGGTAGAGAGCAGTTGCCGTCGCAATCGCGCTCACTGGCCAACAGTCAAGGTAAGTGTGAACGAAAACAGCAAAAATATTCCATCACAGAGATTAGCATTAGGCCATTAAGCGAAAAAGCGGGGAGAACTGCAAACTTTTTCGCAAGTCCAGCAGCTATGCGTAAAGCAACAACGGCAGCAATAACAACAACAACCACAATTATTTTAAAAAAACTAGCAAGAGACAGACATGTTTCACAATAGTTCCAAG ************************************************.....(((((..(((.............)))..)))))..............(((.....((((((((((((......))))....)))))))).(((......))).(((.....))).....)))........................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	SRR060679 140x9_testes_total	GSM1528803 follicle cells	SRR060660 Argentina_ovaries_total	SRR060665 9_females_carcasses_total	SRR060688 160_ovaries_total	SRR060678 9x140_testes_total	SRR060674 9x140_ovaries_total	SRR060676 9xArg_ovaries_total	SRR060685 9xArg_0-2h_embryos_total	SRR060677 Argx9_ovaries_total
............GTTGCCGTCGCAATCGCGCTCACTGGC....................................................................................................................................................................................................................	27	0	1	5.00	5	4	0	0	0	1	0	0	0	0	0	0
....AGAGAGCAGTTGCCGTCGCAATCGC..............................................................................................................................................................................................................................	25	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............TGCCGTCGCAATCGCGCTCACT.......................................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
....................CGCAATCGCGCTCACTGGC....................................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..............TGCCGTCGCAATCGCGCTCACTGGCCAA.................................................................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...............GCCGTCGCAATCGCGCTCACTGGCC...................................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.......................AATCGCGCTCACTGGCCAACA...............................................................................................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............GTTGCCGTCGCAATCGCGCTCACTGGCC...................................................................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................AAGCGAAAAAGCGGGGAGAACTGC.......................................................................................................................	24	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.GGTAGAGAGCAGTTGCCGTCGCAATC................................................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
............................CGCTCACTGGCCAACAGTC............................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
......................CAATCGCGCTCACTGGCCAACAGTC............................................................................................................................................................................................................	25	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................CAACAACTTCAATAATTTTAAAAAAA.....................................	26	3	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................ACGGCAGCGATAACAACAACA..........................................................	21	1	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0
..................................CTGGCTAACGGTCAAGGT.......................................................................................................................................................................................................	18	2	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CCAGAAGCTATTCGTAAGGC...................................................................................	20	3	4	0.25	1	0	0	0	0	0	0	0	0	1	0	0
........................ATGGCGCTCACTGGTCAA.................................................................................................................................................................................................................	18	2	6	0.17	1	0	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................GAACAATTATTTTAAAAAAA.....................................	20	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
.................................................................................................................................................ATCCCAGCAGATATGCGTA.......................................................................................	19	3	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

GCCATCTCTCGTCAACGGCAGCGTTAGCGCGAGTGACCGGTTGTCAGTTCCATTCACACTTGCTTTTGTCGTTTTTATAAGGTAGTGTCTCTAATCGTAATCCGGTAATTCGCTTTTTCGCCCCTCTTGACGTTTGAAAAAGCGTTCAGGTCGTCGATACGCATTTCGTTGTTGCCGTCGTTATTGTTGTTGTTGGTGTTAATAAAATTTTTTTGATCGTTCTCTGTCTGTACAAAGTGTTATCAAGGTTC ************************************************.....(((((..(((.............)))..)))))..............(((.....((((((((((((......))))....)))))))).(((......))).(((.....))).....)))........................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060668 160x9_males_carcasses_total	V053 head	SRR060679 140x9_testes_total	V047 embryo
.......................................................................................................................................GAAAAAGTGACCAGGTCGTCGA..............................................................................................	22	3	2	0.50	1	1	0	0	0
.......................................................ACACTTGCCTATGTCGTTTTA...............................................................................................................................................................................	21	3	3	0.33	1	0	1	0	0
.....................................................................................................................................TTGAGAAAGCGATCAGGT....................................................................................................	18	2	6	0.17	1	0	0	1	0
...........................................................................................................................................AAGCGATCACGTCGTCGAGA............................................................................................	20	3	9	0.11	1	1	0	0	0
..............................................................................................................................................................................CCGTCGTAATTGCTGTTGTTG........................................................	21	2	12	0.08	1	0	1	0	0
..........................................................................................................................................................CCAAATGCATTTCGTTGTTG.............................................................................	20	3	20	0.05	1	0	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_10322:234806-235056 +	dvi_578	CGGTAGAGAGCAG-------TTGCCGTCGCAATCGC-----------------------GC-----------------TCACTGGCCAACAGTCAAGGTAAGTGT--GAACG---AAA--ACAGCAAAAATATTCCATCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAGATTAGCATTAGGCCATTAAGCGAAAAAGC-----GGG---------------------GAG-AACTGCAAACTTT-TTCGCAAGTCCA-----------------------------GCAGCTATGCGTAAAGCAA------CAACG------------GCAGCAATAACAA----------------C----AACAA---CC---------------------ACAATTATTTTAAA---------A------AAACTAGCAAGAGACAG---------------ACATGTTTCACAATAGTTCCAAG
droMoj3	scaffold_6680:2282876-2283147 +		CGGTAGAGAGCAG-------TTGCCAGCGCAGTCGC-----------------------GT-----------------TCATTCGCCAGCAGTCAA----------------------------------------------------------------------------------------------GGTGAGTA-------------------------------------------------------------CA-------------AC------AA-----CAACAATAGCAAC-------------------CG-----------------CGA------------------------------AATCAA---CAACAAAGACAGTCCGCAAATATCATCAACATAACAGAAATTAGCATTAGGCCATTAAGAGTGAAAGACCTGTGGGAGGGACTTCAGGGGGGCTATGGAGCAACTGCGAACTTTATTCGCCATTGGA-----------------------------GCAGCGATGCGTAAAGCAA-----------------------------------------------------------------------------------------------------CAATAAC------AAAA------------GACAG---------------TTACGTTTAATACGAGTTCGTAG
droGri2	scaffold_15110:3446660-3446814 +		CAAGGAAAATTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-G-AGAAACAA-----CAACAGCAGTAGCAACGAGATCAACAATAA---------------------CAGCAGAAAAAGGAGCAACAGCAG-----------------------------------------------------------------------------------------------------------------------------------------------CAATAGCAACAG---TAACTATGCCAGCAGC-----AACATCAGCAGCAACAG-------------------------------------------------C----AGCAACATCAGCAACATTAATAAA---------------------------------AGCA-----------------G--C--------------------------------AA
droWil2	scf2_1100000004512:2446064-2446272 +		GGCTTACGAGCAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGCCATCGAGCTACTCGCCAGTAAGCGAAAAATTAAAATAGAAAATCAAGAG--GATCACCAT--C---ATCATCATCAACATGACCTTGATCAA---------------------GAGGATCAAGAGAATCGAGTGCAG-----------------------------------------------------------------------------------------------------------------------------------------------CTTATTAAATCG---TCTC------------CCGCGTATAAATTAAATAA------TAATA------------ATCACAGTAATAA----------------C----AACAATTATAG---------------------------------CAATTAC------TATA-----------------AAG------------A--------------------AA
dp5	Unknown_group_450:7664-7754 +		AGCCACAGATTTA-------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG----------------------------GCAA------C--------AC------------------------CAACACCAAAAACAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAA------CAACT------------GCAACATTTGCAA----------------C----AACGACATCAA---------------------------------CAAAAAT------TGAC-----------------AAT------------A--------------------GA
droPer2	scaffold_1113:3745-3843 +		CATTGAGCCGTTC----------CC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCACAA-----CA----------------------------GCAG------C--------AG------------------------CAGCTACAGCAGCTGCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCA-------------------------------GCCGCAGCGCGAACAA-CAACAACAGCGACA---------------------------------GCAGCAGC------AGCA-----------------G------------------------------------C
droAna3	scaffold_13248:4367533-4367685 -		CAGCAACC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGAAAGTG-------------------------------------------------------------------------------------------CA----------------------------ACAACAGCAACAACATCAA--CAGCATCAACTGGTGCAACAACAA-----------------------------------------------------------------------------------------------------------------------------------------------CAATAGCAACCAGTGCAACCTTATCCATATC-----AGCAACCTGTGCAA------CAACA------------GCAACTGCAACAA----------------C----AACAA---CC------------------------------------------------ACA-----------------G--CAACAATCTGAAA--------------------GA
droBip1	scf7180000396541:858411-858560 -		AACAAAAAATTAC-------------------------------------------------------------------------------------------------------------AACAAAAAAATTACAACAAAAAA---------------------------------------------------------------------------------------AA----------------------TTACAACAAAAAATTACAAC--AACAAAAACTACA----------------------------ACAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAAACTACAA-----------------------------CAA------CAACAAAAACT------------ACA----------ACAACAACAAAAACTA-CAACAACAACAAAA---------------------------------ACTACAAC------AACA-----------------A--C--------------------------------AA
droKik1	scf7180000302517:543232-543399 -		ACGAGCCGAGTGG--------------------------------------------------------------------------------CGAGATAAGCGCGCGAATG---AAATGCGAACGAAGGAGTCACAACA-------------------------------------CAAAACCAGACACTGGGACTC-----------------------------------------------------------------------------------CAT-----CA----------------------------ACAG---CAGCAG--------------------------------CAACAACACTTGCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA------CA------------ACA----------ACAACAATAATACCAA-CAACAACTGCTTCA---------------------------------ACAACAACAACAACCATA-----------------A--C--------------------------------TA
droFic1	scf7180000449741:497-680 +		CGCAGCAGCATAAGCCGCAGCAGCAGCCGCAGCAG----------------------------------------------------------------------------------------------------------CATA---------------------------------------------------------------------------------------AG----------------------CCGCAGCAGC-AGCCGCAGC--AGCATAAGCCGCAGCAGCAGCCGC-------------------AG-----------------CAA------------------------------CATCAG---CAG-----------------------------------------------------------------------------------------------------------------------------CAGG-----------------------------CGCAGCCGCATCAA------CGGCAGCCGGAGCAACAACA----------ACAGCAGCCCCAGCAG-CAGCAACGGCGGCAG---------------------------------CGACAGC------AGCA-----------------GCC------------G--------------------CA
droEle1	scf7180000491182:26752-26931 -		AGCAGCCGCC--G-------TTCCCGGC------TC-----------------------CC---------AGTGGTGGTACTCGGCCGCCAATCAA--------------------------------------------------------------GGCCAGGTCGATGCCAACA------------CT-GCCGCGCAACTGCAGCAC-----------------------------------------------------------------------CAA-----C---AGC-------------------------AG-----------------CAGCAGCAGCAG------------CAGCAACAGCAGCAG-----------------------------------------------------------------------------------------------------------------------------------CAGCA--------------------------------------------GCA-------------------------------GCAACAGCACCAGCAG-CAACAACAGATGCAA---------------------------------CAGCAGC------AACA-----------------GCA------------A--------------------CA
droRho1	scf7180000773652:174723-174901 -		TGAAAAGGGACAGGCAGTAA---------------CACTTATAGCCAAACAAAAGTCTAAA-----------------TCACTGGCAACAAACGAG----------TGAAAATAT------GAGCTGGGCAACAAAAAAG-------------------------------------CAAAGGCAG---------------------------------AAATG-----------------------------------------------------------------TT--TCAACTGTAGCA--------------GCGG---CAGCGA--------------------------------CAACAACAACCGGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAG--------------------------------------------------CAGCAGCAACAGCAA---------------------------------CAACAAC------AGCA-----------------GCA---------------------------------AC
droBia1	scf7180000302428:9216940-9217047 +		TAGTAGATGGTAC-------TAGTAA---------------------GGTCGGGATCCCAT-----------------TCACCCACCACCCATTAT----------CGTCGCCAT------TC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGGCTGTG-----------------------------------CAGAAATTAGCATGAAGCAATAAAGCAGAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-----------------G--C--------------------------------AG
droTak1	scf7180000413383:7218-7347 -		TAAGATTAAACCG----------------------------------------------------------------------------A----------------------------------------------AATAAGGAA------------------------------------------------AATTA-------------------------------------------------------------TC-------------AA------GA-----AAACAATAACCAC-------------------TT-----------------CCA------------------------------AAATAT--------------------------------------------------------------------------------------------------------------------------------CAACAAT-----------------------------TATCAACAAAGAAA------CAATT------------ATCAAAATAATAA----------------C----AATCA---AA---------------------AGGCTAATTTTAAT---------A------ATAATA-----------A--T--------------------------------AA
droEug1	scf7180000409548:568140-568247 +		GCGAAAATGCTGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC---------------------------------------------------GACAAGAA-----CA----------------------------ACAA------A--------GA------------------------CAACAACAACAGCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACA------------ACA----------ACAACAACAATAACAA-CAACAACAACAATA---------------------------------ACAAAAGC------ATTA---------AGAAA---AAT------------A--------------------CA
dm3	chr3L:11500139-11500200 -		CAGCAGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAGCAG-------------------------------------------------------------------------------------------CA----------------------------ACAGCAG-----------------------------------------------CAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAA----------------C----AACGACATCAG---------------------------------CTA---A------GTCAAA---------------A--C--------------------------------AA
droSim2	4:630653-630752 -		GCTGTGGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGCGCACATTC----------------------------------------------------------AA----------------------------GCAG--------------------------------------------CTCTGGCGGCTGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTAGCAG-------------------------------CTG----------------------C--CAACAATAACAAAAACAGCAGCCATTATTCGAAC---------A------ACACTA--------------------------A--------------------TA
droSec2	scaffold_30:529949-530048 -		GCTGTGGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGCGCACATCC----------------------------------------------------------AA----------------------------GCAG--------------------------------------------CTCTGGCGGCTGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTAGCAG-------------------------------CTG----------------------C--CAACAATAACAAAAACAGCAGCCATTATTCGAAC---------A------ACACTA--------------------------A--------------------TA
droYak3	2R:3540560-3540662 -		AGCAAAAGAGGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCACAAGTCAAAT----------------------GT-TT-----------A-G-CA-----------AA----------------------------TCAA--------------------------------------------CAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGATTTAAACAA------GAGCA------------GCAGCAACAGAAA----------------C----AACAG---CC------------------------GCAATA------ACA-------------------------------------GCGAAACA--------------------AC
droEre2	scaffold_4845:2555702-2555905 -		AGGTTGGGGTTGG-------TTGGGGTTGGGGTTCG-----------------------GGTTGGGGCAG--------CCTCTGG-CCACGGTTAAGCCGA-----------------------------------GCCACACCGAACCGCCAATGAAGGCGAT----TTGACAACA----------------------AACAGATACGCCAGAAGCAGCAGAG-----------------------------------------------------------------CA----------------------------CCAC------C--------AG------------------------CATCTGCAGCAGCCACAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCA-------------------------------GCATCATCAGAGGCAA-CGGCAACGGCAACAG---------------------------------CAACAGC------AACT-----------------GCC------------A--------------------CA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

CGGTAGAGAGCAG-------TTGCCGTCGCAATCGC-----------------------GC-----------------TCACTGGCCAACAGTCAAGGTAAGTGT--GAACG---AAA--ACAGCAAAAATATTCCATCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAGATTAGCATTAGGCCATTAAGCGAAAAAGC-----GGG---------------------GAG-AACTGCAAACTTT-TTCGCAAGTCCA-----------------------------GCAGCTATGCGTAAAGCAA------CAACG------------GCAGCAATAACAA----------------C----AACAA---CC---------------------ACAATTATTTTAAA---------A------AAACTAGCAAGAGACAG---------------ACATGTTTCACAATAGTTCCAAG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............G-------TTGCCGTCGCAATCGC-----------------------GC-----------------TCACTGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	5.00	5	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....AGAGAGCAG-------TTGCCGTCGCAATCGC-----------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TGCCGTCGCAATCGC-----------------------GC-----------------TCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................CGCAATCGC-----------------------GC-----------------TCACTGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TGCCGTCGCAATCGC-----------------------GC-----------------TCACTGGCCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GCCGTCGCAATCGC-----------------------GC-----------------TCACTGGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................AATCGC-----------------------GC-----------------TCACTGGCCAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
............G-------TTGCCGTCGCAATCGC-----------------------GC-----------------TCACTGGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGAAAAAGC-----GGG---------------------GAG-AACTGC.................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GGTAGAGAGCAG-------TTGCCGTCGCAATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................C-----------------------GC-----------------TCACTGGCCAACAGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CAATCGC-----------------------GC-----------------TCACTGGCCAACAGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CGGTAGAGAGCAG-------TTGCCAGCGCAGTCGC-----------------------GT-----------------TCATTCGCCAGCAGTCAA----------------------------------------------------------------------------------------------GGTGAGTA-------------------------------------------------------------CA-------------AC------AA-----CAACAATAGCAAC-------------------CG-----------------CGA------------------------------AATCAA---CAACAAAGACAGTCCGCAAATATCATCAACATAACAGAAATTAGCATTAGGCCATTAAGAGTGAAAGACCTGTGGGAGGGACTTCAGGGGGGCTATGGAGCAACTGCGAACTTTATTCGCCATTGGA-----------------------------GCAGCGATGCGTAAAGCAA-----------------------------------------------------------------------------------------------------CAATAAC------AAAA------------GACAG---------------TTACGTTTAATACGAGTTCGTAG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........GCAG-------TTGCCAGCGCAGTCGC-----------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
....AGAGAGCAG-------TTGCCAGCGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................AAGACAGTCCGCAAATATCA...................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
....AGAGAGCAG-------TTGCCAGCGCAGTCGC-----------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0
.................................CGC-----------------------GT-----------------TCATTCGCCAGCAGTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.........................AGCGCAGTCGC-----------------------GT-----------------TCATTCGCCAGCAGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0

droGri2

CAAGGAAAATTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-G-AGAAACAA-----CAACAGCAGTAGCAACGAGATCAACAATAA---------------------CAGCAGAAAAAGGAGCAACAGCAG-----------------------------------------------------------------------------------------------------------------------------------------------CAATAGCAACAG---TAACTATGCCAGCAGC-----AACATCAGCAGCAACAG-------------------------------------------------C----AGCAACATCAGCAACATTAATAAA---------------------------------AGCA-----------------G--C--------------------------------AA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
....................................................................................................................................................................................................................................................................................................................................................................AACAGCAG-----------------------------------------------------------------------------------------------------------------------------------------------CAATAGCAACA....................................................................................................................................................................................................................	19	12	0.08	1	1	0
.................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAG-----------------------------------------------------------------------------------------------------------------------------------------------CAATAGCA.......................................................................................................................................................................................................................	19	19	0.05	1	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG-------------------------------------------------C----AGCAACATCAGCA.......................................................................................................	18	20	0.05	1	1	0

droWil2

GGCTTACGAGCAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGCCATCGAGCTACTCGCCAGTAAGCGAAAAATTAAAATAGAAAATCAAGAG--GATCACCAT--C---ATCATCATCAACATGACCTTGATCAA---------------------GAGGATCAAGAGAATCGAGTGCAG-----------------------------------------------------------------------------------------------------------------------------------------------CTTATTAAATCG---TCTC------------CCGCGTATAAATTAAATAA------TAATA------------ATCACAGTAATAA----------------C----AACAATTATAG---------------------------------CAATTAC------TATA-----------------AAG------------A--------------------AA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............................................................................................................................................................................................................................................................................................................AACATGACCTTGATCAA---------------------GAGG..................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................TCATCAACATGACCTTGATCAA---------------------GAGGAT................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0

dp5

AGCCACAGATTTA-------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG----------------------------GCAA------C--------AC------------------------CAACACCAAAAACAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAA------CAACT------------GCAACATTTGCAA----------------C----AACGACATCAA---------------------------------CAAAAAT------TGAC-----------------AAT------------A--------------------GA

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

CATTGAGCCGTTC----------CC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCACAA-----CA----------------------------GCAG------C--------AG------------------------CAGCTACAGCAGCTGCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCA-------------------------------GCCGCAGCGCGAACAA-CAACAACAGCGACA---------------------------------GCAGCAGC------AGCA-----------------G------------------------------------C	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCGACA---------------------------------GCAGCAG..................................................................	19	20	0.20	4	0	4	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCGACA---------------------------------GCAGCAGC------AGCA-----------------G------------------------------------.	25	20	0.05	1	0	1	0	0	0	0
...TGAGCCGTTC----------CC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCACAA-----CA----------------------------GCAG------C--------........................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-------------------------------GCCGCAGCGCGAACAA-C.......................................................................................................................	20	20	0.05	1	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................AGCTGCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCA-------------------------------GCCGCAGCGCGTT............................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................TGCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCA-------------------------------GCCGCAGCGCGAAC...........................................................................................................................	24	20	0.05	1	0	1	0	0	0	0

droAna3

CAGCAACC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGAAAGTG-------------------------------------------------------------------------------------------CA----------------------------ACAACAGCAACAACATCAA--CAGCATCAACTGGTGCAACAACAA-----------------------------------------------------------------------------------------------------------------------------------------------CAATAGCAACCAGTGCAACCTTATCCATATC-----AGCAACCTGTGCAA------CAACA------------GCAACTGCAACAA----------------C----AACAA---CC------------------------------------------------ACA-----------------G--CAACAATCTGAAA--------------------GA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCATATC-----AGCAACCTGTGC...............................................................................................................................................................................	21	1	8.00	8	0	8	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCATATC-----AGCAACCTGTGCAA------CAAC...................................................................................................................................................................	27	1	7.00	7	2	5	0	0	0	0
..................................................................................................................................................................................................................................................................................................A----------------------------ACAACAGCAACAACATCAA--CAGCATC...............................................................................................................................................................................................................................................................................................................................................................................................	27	1	6.00	6	0	6	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATATC-----AGCAACCTGTGCAA------C......................................................................................................................................................................	22	1	5.00	5	0	5	0	0	0	0
..................................................................................................................................................................................................................................................................................................A----------------------------ACAACAGCAACAACATCAA--CAGC..................................................................................................................................................................................................................................................................................................................................................................................................	24	1	5.00	5	0	5	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACAA----------------C----AACAA---CC------------------------------------------------ACA-----------------G--CAACAATC...........................	28	1	4.00	4	1	3	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA------------GCAACTGCAACAA----------------C----AACAA---CC------------------------------------------------..........................................................	25	1	3.00	3	0	3	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCATATC-----AGCAACCTGTGCAA------.......................................................................................................................................................................	23	1	3.00	3	1	2	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------GCAACTGCAACAA----------------C----AACAA---CC------------------------------------------------ACA-----------------G--C..................................	27	1	3.00	3	1	2	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................ACAACAGCAACAACATCAA--CAGCATC...............................................................................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	1	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA------------GCAACTGCAACAA----------------C----AACAA---CC------------------------------------------------..........................................................	26	1	2.00	2	0	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATATC-----AGCAACCTGTGCAA------CAACA------------GC....................................................................................................................................................	28	1	2.00	2	0	2	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACCTTATCCATATC-----AGCAAC.....................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................CAACAACAA-----------------------------------------------------------------------------------------------------------------------------------------------CAATAGCAACCAGTGC...............................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCATATC-----AGCAACCTGTGCAA------CAACA------------......................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................A----------------------------ACAACAGCAACAACATCAA--CAGCAT................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCATATC-----AGCAACCTGTGCAA------CA.....................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................A----------------------------ACAACAGCAACAACATCAA--CAG...................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATCCATATC-----AGCAACCTGTGC...............................................................................................................................................................................	24	1	2.00	2	1	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTGCAACAA----------------C----AACAA---CC------------------------------------------------ACA-----------------G--C..................................	26	1	2.00	2	0	2	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATATC-----AGCAACCTGTGCAA------CAACA------------GC....................................................................................................................................................	29	1	2.00	2	0	2	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATCCATATC-----AGCAACCTGTG................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA------------GCAACTGCAACAA----------------C----AACAA---CC------------------------------------------------AC........................................................	27	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCAACAA----------------C----AACAA---CC------------------------------------------------ACA-----------------G--CAA................................	26	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTGCAACAA----------------C----AACAA---CC------------------------------------------------ACA-----------------......................................	24	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................A----------------------------ACAACAGCAACAACATCAA--CAGCATT...............................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
CAGCAACC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGAAAGTG-------------------------------------------------------------------------------------------CA----------------------------ACAAC......................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................ATCAA--CAGCATCAACTGGTGC......................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTTATCCATATC-----AGCAACC....................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CAACATCAA--CAGCATCAACTGGTGC......................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATC-----AGCAACCTGTGCAA------CAACA------------GC....................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................A-----------------------------------------------------------------------------------------------------------------------------------------------CAATAGCAACCAGTGCAACCTTATCCA....................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................CAACAGCAACAACATCAA--CAG...................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.AGCAACC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGAAAGTG-------------------------------------------------------------------------------------------CA----------------------------ACAACAGC...................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACAA----------------C----AACAA---CC------------------------------------------------ACA-----------------G--CAAC...............................	24	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATC-----AGCAACCTGTGCAA------CA.....................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................AAGTG-------------------------------------------------------------------------------------------CA----------------------------ACAACAGCAACAACATCAA--C.....................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATATC-----AGCAACCTGTGCAA------.......................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................AACAA-----------------------------------------------------------------------------------------------------------------------------------------------CAATAGCAACCAGTGCA..............................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTTATCCATATC-----AGCAACCT...................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................ACAA-----------------------------------------------------------------------------------------------------------------------------------------------CAATAGCAACCAGTGCAAC............................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATCCATATC-----AGCAACCTGTGCA..............................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................ACAACAGCAACAACATCAA--CAGC..................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATC-----AGCAACCTGTGCAA------CAACA------------GC....................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CAACATCAA--CAGCATCAACTG..........................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................TGGTGCAACAACAA-----------------------------------------------------------------------------------------------------------------------------------------------CAATAGCAACC....................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................AACAGCAACAACATCAA--CAGCAT................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCAACAA----------------C----AACAA---CC------------------------------------------------ACA-----------------......................................	22	1	1.00	1	1	0	0	0	0	0
.......C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGAAAGTG-------------------------------------------------------------------------------------------CA----------------------------ACAACAGCAACAAC.............................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................AACAA-----------------------------------------------------------------------------------------------------------------------------------------------CAATAGCAACCAGTGCAAC............................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACAA----------------C----AACAA---CC------------------------------------------------ACA-----------------G--CAACA..............................	25	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-----AGCAACCTGTGCAA------CAACA------------GCAACTGC..............................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATATC-----AGCAACCTGTGCAA------CA.....................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................AACTGGTGCAACAACAA-----------------------------------------------------------------------------------------------------------------------------------------------CAATAGCAAC.....................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTGCAACAA----------------C----AACAA---CC------------------------------------------------ACA-----------------G--CAA................................	28	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................CAACAGCAACAACATCAA--CAGCATC...............................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACAA----------------C----AACAA---CC------------------------------------------------ACA-----------------G--CAACAATCT..........................	29	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------GCAACTGCAACAA----------------C----AACAA---CC------------------------------------------------ACA-----------------......................................	25	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTGCAACAA----------------C----AACAA---CC------------------------------------------------A.........................................................	21	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCATATC-----AGCAACCTGTGCAA------C......................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTGCAACAA----------------C----AACAA---CC------------------------------------------------ACA-----------------G--CAAC...............................	29	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATCCATATC-----AGCAACCTGT.................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCAACAA----------------C----AACAA---CC------------------------------------------------ACA-----------------G--C..................................	24	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCATATC-----AGCAACCTGTGCAT------T......................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................AA-----------------------------------------------------------------------------------------------------------------------------------------------CAATAGCAACCAGTGCAACCTTA........................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................ACAA-----------------------------------------------------------------------------------------------------------------------------------------------CAATAGCAACCAGTGCAACCT..........................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCAACCAGTGCAACCC..........................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................CAACAACAA-----------------------------------------------------------------------------------------------------------------------------------------------CAATAGCAACCA...................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................CATCAACTGGTGCAACAAC................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTGCAACAA----------------C----AACAA---CC------------------------------------------------AC........................................................	22	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCATATC-----AGCAACCTGTGCAA------CAA....................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................AACTGGTGCAACAACAA-----------------------------------------------------------------------------------------------------------------------------------------------CAATAGC........................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................................................................................AGAAAGTG-------------------------------------------------------------------------------------------CA----------------------------ACAACAGCAACAACATC..........................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................CA----------------------------ACAACAGCAACAACATCAA--CAGCATC...............................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCAACCAGTGCAACCTTATCC.....................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................A----------------------------ACAACAGCAACAACATCAA--CAGCA.................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................AACAACAA-----------------------------------------------------------------------------------------------------------------------------------------------CAATAGCAACCAGT.................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCAACCAGTGCAACC...........................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------GCAACTGCAACAA----------------C----AACAA---CC------------------------------------------------ACA-----------------G--...................................	26	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---CC------------------------------------------------ACA-----------------G--CAACAATCTGAA.......................	21	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATATC-----AGCAACCTGTGCAA------CA.....................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATATC-----AGCAACCTGTGCA..............................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTTATCCATATC-----AGC........................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................ACAACAA-----------------------------------------------------------------------------------------------------------------------------------------------CAATAGCAACCAGTG................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATC-----AGCAACCTGTGCAA------C......................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................AACAGCAACAACATCAA--CAGCATC...............................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA------------GCAACTGCAACAA----------------C----AAC.................................................................................................................	22	2	0.50	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................A----------------------------ACAACAGCAACAACATCAA--CA....................................................................................................................................................................................................................................................................................................................................................................................................	22	3	0.33	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA------------GCAACTGCAACAA----------------C----A...................................................................................................................	20	4	0.25	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................CA----------------------------ACAACAGCAACAACATC..........................................................................................................................................................................................................................................................................................................................................................................................................	19	9	0.11	1	0	1	0	0	0	0

droBip1

AACAAAAAATTAC-------------------------------------------------------------------------------------------------------------AACAAAAAAATTACAACAAAAAA---------------------------------------------------------------------------------------AA----------------------TTACAACAAAAAATTACAAC--AACAAAAACTACA----------------------------ACAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAAACTACAA-----------------------------CAA------CAACAAAAACT------------ACA----------ACAACAACAAAAACTA-CAACAACAACAAAA---------------------------------ACTACAAC------AACA-----------------A--C--------------------------------AA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ACGAGCCGAGTGG--------------------------------------------------------------------------------CGAGATAAGCGCGCGAATG---AAATGCGAACGAAGGAGTCACAACA-------------------------------------CAAAACCAGACACTGGGACTC-----------------------------------------------------------------------------------CAT-----CA----------------------------ACAG---CAGCAG--------------------------------CAACAACACTTGCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA------CA------------ACA----------ACAACAATAATACCAA-CAACAACTGCTTCA---------------------------------ACAACAACAACAACCATA-----------------A--C--------------------------------TA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CGCAGCAGCATAAGCCGCAGCAGCAGCCGCAGCAG----------------------------------------------------------------------------------------------------------CATA---------------------------------------------------------------------------------------AG----------------------CCGCAGCAGC-AGCCGCAGC--AGCATAAGCCGCAGCAGCAGCCGC-------------------AG-----------------CAA------------------------------CATCAG---CAG-----------------------------------------------------------------------------------------------------------------------------CAGG-----------------------------CGCAGCCGCATCAA------CGGCAGCCGGAGCAACAACA----------ACAGCAGCCCCAGCAG-CAGCAACGGCGGCAG---------------------------------CGACAGC------AGCA-----------------GCC------------G--------------------CA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGCAGCCGCC--G-------TTCCCGGC------TC-----------------------CC---------AGTGGTGGTACTCGGCCGCCAATCAA--------------------------------------------------------------GGCCAGGTCGATGCCAACA------------CT-GCCGCGCAACTGCAGCAC-----------------------------------------------------------------------CAA-----C---AGC-------------------------AG-----------------CAGCAGCAGCAG------------CAGCAACAGCAGCAG-----------------------------------------------------------------------------------------------------------------------------------CAGCA--------------------------------------------GCA-------------------------------GCAACAGCACCAGCAG-CAACAACAGATGCAA---------------------------------CAGCAGC------AACA-----------------GCA------------A--------------------CA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGAAAAGGGACAGGCAGTAA---------------CACTTATAGCCAAACAAAAGTCTAAA-----------------TCACTGGCAACAAACGAG----------TGAAAATAT------GAGCTGGGCAACAAAAAAG-------------------------------------CAAAGGCAG---------------------------------AAATG-----------------------------------------------------------------TT--TCAACTGTAGCA--------------GCGG---CAGCGA--------------------------------CAACAACAACCGGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAG--------------------------------------------------CAGCAGCAACAGCAA---------------------------------CAACAAC------AGCA-----------------GCA---------------------------------AC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TAGTAGATGGTAC-------TAGTAA---------------------GGTCGGGATCCCAT-----------------TCACCCACCACCCATTAT----------CGTCGCCAT------TC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGGCTGTG-----------------------------------CAGAAATTAGCATGAAGCAATAAAGCAGAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-----------------G--C--------------------------------AG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TAAGATTAAACCG----------------------------------------------------------------------------A----------------------------------------------AATAAGGAA------------------------------------------------AATTA-------------------------------------------------------------TC-------------AA------GA-----AAACAATAACCAC-------------------TT-----------------CCA------------------------------AAATAT--------------------------------------------------------------------------------------------------------------------------------CAACAAT-----------------------------TATCAACAAAGAAA------CAATT------------ATCAAAATAATAA----------------C----AATCA---AA---------------------AGGCTAATTTTAAT---------A------ATAATA-----------A--T--------------------------------AA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GCGAAAATGCTGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC---------------------------------------------------GACAAGAA-----CA----------------------------ACAA------A--------GA------------------------CAACAACAACAGCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACA------------ACA----------ACAACAACAATAACAA-CAACAACAACAATA---------------------------------ACAAAAGC------ATTA---------AGAAA---AAT------------A--------------------CA	Size	Hit Count	Total Norm	Total
No Reads

dm3

CAGCAGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAGCAG-------------------------------------------------------------------------------------------CA----------------------------ACAGCAG-----------------------------------------------CAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAA----------------C----AACGACATCAG---------------------------------CTA---A------GTCAAA---------------A--C--------------------------------AA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA----------------C----AACGACATCAG---------------------------------CTA---A------...........................................................	21	20	0.40	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................ACAACAGCAG-------------------------------------------------------------------------------------------CA----------------------------ACAGCAG-----------------------------------------------CA...................................................................................................................................................................................................................................................................................................................................................................	21	20	0.40	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA----------------C----AACGACATCAG---------------------------------CTA---A------G..........................................................	21	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CAGCAGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAGCAG-------------------------------------------------------------------------------------------C........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..GCAGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAGCAG-------------------------------------------------------------------------------------------CA----------------------------ACAGCAG-----------------------------------------------.....................................................................................................................................................................................................................................................................................................................................................................	25	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................AACAGCAG-------------------------------------------------------------------------------------------CA----------------------------ACAGCAG-----------------------------------------------CAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..............................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
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..................................................................................................................................................................................................................................................................................................A----------------------------ACAGCAG-----------------------------------------------CAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAA----------------C----A...................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................ACAGCAG-------------------------------------------------------------------------------------------CA----------------------------ACAGCAG-----------------------------------------------CAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA............................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA----------------C----AACGACATCAG---------------------------------CTC---T------T..........................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GCTGTGGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGCGCACATTC----------------------------------------------------------AA----------------------------GCAG--------------------------------------------CTCTGGCGGCTGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTAGCAG-------------------------------CTG----------------------C--CAACAATAACAAAAACAGCAGCCATTATTCGAAC---------A------ACACTA--------------------------A--------------------TA

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

GCTGTGGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGCGCACATCC----------------------------------------------------------AA----------------------------GCAG--------------------------------------------CTCTGGCGGCTGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTAGCAG-------------------------------CTG----------------------C--CAACAATAACAAAAACAGCAGCCATTATTCGAAC---------A------ACACTA--------------------------A--------------------TA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

AGCAAAAGAGGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCACAAGTCAAAT----------------------GT-TT-----------A-G-CA-----------AA----------------------------TCAA--------------------------------------------CAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGATTTAAACAA------GAGCA------------GCAGCAACAGAAA----------------C----AACAG---CC------------------------GCAATA------ACA-------------------------------------GCGAAACA--------------------AC

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

AGGTTGGGGTTGG-------TTGGGGTTGGGGTTCG-----------------------GGTTGGGGCAG--------CCTCTGG-CCACGGTTAAGCCGA-----------------------------------GCCACACCGAACCGCCAATGAAGGCGAT----TTGACAACA----------------------AACAGATACGCCAGAAGCAGCAGAG-----------------------------------------------------------------CA----------------------------CCAC------C--------AG------------------------CATCTGCAGCAGCCACAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCA-------------------------------GCATCATCAGAGGCAA-CGGCAACGGCAACAG---------------------------------CAACAGC------AACT-----------------GCC------------A--------------------CA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCAGAGGCAA-CGGCAA..................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0

dvi_578

scaffold_10322:234856-235006 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-22.9	-22.5	-22.3