dvi_5708

Name	Class	Family	Strand
DMR_DV	Unknown	Unknown	-

Species	Coordinate	ID	Alignment
droVir3	scaffold_12875:8290335-8290585 +	dvi_5708	TATTTCC--GTC-AAATAATGTCAGATTTTGGAATTTTATACCATTTTTGACT-CGTAAGGA-------------------TCAG--TTCTATC---------------------------------------------------------AATTGGCATCAAAAAAAGGAAATCCAAAATTTTGACCCAAATCGACAAAATGGCAAGGGGTTACATCACGT-----TTTTTTTT-------------------------------------------------TTTAATAGAGGTCGGTGCGAAAATCGAAA----------------------------------------CTTTTTTATT-ATCTCGGATAATAGCTCCGCGCGGAGGTATGACGTT-CCAAAACGACATAGCTCCCCGCGGAGAT
droWil2	scf2_1100000007349:417-557 +		GTC----------AATTTTTGACCGATTTTTGAAATTCATATATCATTTTATC-CATCAGCA-------------------AATT--GACTTTC---------------------------------------------------------AGTTGGCATTAAAACCTCAAAAAGTAAAATTTTCATCTTTTCTGAGAAAA-------------------------------------------------------------------------------TCAC---------------------------------------------------------------------------GATTTAGTA------------------AAAATTATGTTTTT-TT--------------------------
dp5	Unknown_group_95:17773-17856 -		AATATAA--GTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT------------------------------------------------------------------------------------------TTTACATTCGAAATTAGTTA----AT-------------------------------------------------TATTTTCTGGCGGACTTAAGTCGTT-TCGGAACGACATATCTCCGC--CGTG--
droPer2	scaffold_125:76713-76829 -		GGAA----------TTT--------------------TTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTTTTTTTTTTTTGAGAACTTATTTCGTTTGAAAGCGTCATATCTCCGCTCGGAGACAC---------------------------------------------------------------------------------------------------GGCGGAGTTATGTCGTT-TCATATCGTCATATCTCCGCGCGGAGGT
droKik1	scf7180000299347:6169-6419 +		CATTTCCCAAAGCGATTACCATCCGATTTTGGCCATGCAAA----ATTTTTTC-GATGGACAAAAATTGAGTTCAAGGGAGCATTGTGAAAATCGAATCGCCGAGGTTTTTGCCAGTAGGGACAAGGACTTCTTAAGGAGAGGCATATACAAGTTACCATCAAAATGGCAGAAAATCATATCTC---------------------------------------------------------------------------------------CGCCCGGAGA--------------------------------TATGTCA----CT-------------------------------------------------TTTTTTCTGGCGGAGATATGTCGCA-TGAAAACGACATAACTCCACGCGGAGAT
droEle1	scf7180000491271:9631-9684 -		A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCTCCGCGCAGAGATAAGACGTT-TGAAAACGACATATCTCAGCGCGAAAAT
droRho1	scf7180000778035:145653-145753 +		AAACCAT--GGGAAATAATTGTCAGATGTTGGAATGCCATACCTCATTGAATTACGTTATAA-------------------AATT--TCCAATC---------------------------------------------------------GGATGGCATTCACAGCTAAAAATTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAT
droBia1	scf7180000302113:1044727-1044843 +		TAAT-----GGGAAATAATGGTCCAAATATGGAATGTTATATCTTATTGAACT-CGTAAAAA-------------------CATT--CCCTATC---------------------------------------------------------GATTGGCGTTAAAGTTACGAAAACAAAAAATTTTGCCAATTTTTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--AAA
droTak1	scf7180000415995:48169-48410 -		TAAA----------ACT-ATAT-TAATTTTGT--TTTTATTACATTTTGAATT-CAGAAGTT-------------------TCAC--TAAGATCGTTCCATTCAAAAAAT--CATAAAAATAC-----------AAGGA------------------------------------AAAATTTATATTAAAAGTTCAAAATATGACTACAG------------------------------------------------------------------------------------------TTAACATTCAAATCTGTCAAAATAATTATTCCGACTAGTGTACATGGAGGTAAAATATTTATTTTTCAAACGTCATACCTCCGCGCGGAGATATTTCGTTTGCAGAAAG------------GCGGAGAT
droYak3	2R:1313745-1313797 +		A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCTCCGAGCGGAGGTATGGTGTTTTCTAAACGACATTTCTCC--GCCGAAAC
droEre2	scaffold_4929:23995271-23995374 -		GGGC-----GGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCATGTAGCT-----TTTT-------------------------------------------------TTT-----------------------------------------------------------GACGGAGCTTTTTAGTTTTGTAAATGTCATATCTCCAAGCGGAGTTATAACGTTTTCTTAACGACATTTCTCCGC--CGAA--

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

TATTTCC--GTC-AAATAATGTCAGATTTTGGAATTTTATACCATTTTTGACT-CGTAAGGA-------------------TCAG--TTCTATC---------------------------------------------------------AATTGGCATCAAAAAAAGGAAATCCAAAATTTTGACCCAAATCGACAAAATGGCAAGGGGTTACATCACGT-----TTTTTTTT-------------------------------------------------TTTAATAGAGGTCGGTGCGAAAATCGAAA----------------------------------------CTTTTTTATT-ATCTCGGATAATAGCTCCGCGCGGAGGTATGACGTT-CCAAAACGACATAGCTCCCCGCGGAGAT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....................................................T-CGTAAGGA-------------------TCAG--TTCTATC---------------------------------------------------------AATT..................................................................................................................................................................................................................................................................................	24	10	1.20	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	8	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TTTGACCCAAATCGACAAAATGGCA...............................................................................................................................................................................................................................	25	20	0.45	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AACGACATAGCTCCCCGCGGA...	21	20	0.45	9	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0
....................................TTATACCATTTTTGACT-CGTAAGGA-------------------T...........................................................................................................................................................................................................................................................................................................................................................	26	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................TAGAGGTCGGTGCGAAAATCGAAA----------------------------------------CT..........................................................................	26	20	0.30	6	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................T-CGTAAGGA-------------------TCAG--TTCTATC---------------------------------------------------------AATTG.................................................................................................................................................................................................................................................................................	25	10	0.30	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................CAAAATGGCAAGGGGTTACATC...................................................................................................................................................................................................................	22	20	0.25	5	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TGTCAGATTTTGGAATTTTATACCAT................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.25	5	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AACGACATAGCTCCCCGCGG....	20	20	0.25	5	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................T-CGTAAGGA-------------------TCAG--TTCTATC---------------------------------------------------------AATTGGC...............................................................................................................................................................................................................................................................................	27	9	0.22	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................CT-CGTAAGGA-------------------TCAG--TTCTATC---------------------------------------------------------AATT..................................................................................................................................................................................................................................................................................	25	9	0.22	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................TGGAATTTTATACCATTTTTGAC.........................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3
....................................TTATACCATTTTTGACT-CGTAAGGA-------------------............................................................................................................................................................................................................................................................................................................................................................	25	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CCCAAATCGACAAAATGGCA...............................................................................................................................................................................................................................	20	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................TAGAGGTCGGTGCGAAAATCGAAA----------------------------------------C...........................................................................	25	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
..TTTCC--GTC-AAATAATGTCAGATTTTG..............................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
................................................TGACT-CGTAAGGA-------------------TCAG--TTCTATC---------------------------------------------------------AA....................................................................................................................................................................................................................................................................................	26	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TATT-ATCTCGGATAATAGCTCCGCGC...........................................	26	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................GACT-CGTAAGGA-------------------TCAG--TTCTATC---------------------------------------------------------AAT...................................................................................................................................................................................................................................................................................	26	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................CT-CGTAAGGA-------------------TCAG--TTCTATC---------------------------------------------------------AATTG.................................................................................................................................................................................................................................................................................	26	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TGTCAGATTTTGGAATTTTATACCATT...............................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................TATACCATTTTTGACT-CGTAAGG................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................AATGGCAAGGGGTTACATCAC.................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TAATGTCAGATTTTGGAATTTTAT.....................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................TATACCATTTTTGACT-CGTAAGGA-------------------TC..........................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................GCGCGGAGGTATGACGTT-CCA.........................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TTATACCATTTTTGACT-CGTAAGG................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TTATACCATTTTTGACT-CGTAAGGA-------------------TCA.........................................................................................................................................................................................................................................................................................................................................................	28	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TTTCC--GTC-AAATAATGTCAGATTT................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TGTCAGATTTTGGAATTTTATACCATTT..............................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................AAATGGCAAGGGGTTACATCA..................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................TACCATTTTTGACT-CGTAAGGA-------------------TCAG--T.....................................................................................................................................................................................................................................................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................CGACATAGCTCCCCGCGGA...	19	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................AAACGACATAGCTCCCCGCGG....	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................ACGACATAGCTCCCCGCGGAG..	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................AAATCGACAAAATGGCAAGGG...........................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................TGGAATTTTATACCATTTTTGACT-CG.....................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.................................ATTTTATACCATTTTTGACT-C......................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................AAATGGCAAGGGGTTACATCAC.................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................CGACATAGCTCCCCGCGGAGA.	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................GGCAAGGGGTTACATCACGT-----T.........................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CCCAAATCGACAAAATGGCAAGG............................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................CTCCGCGCGGAGGTATGACGTT-CC..........................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................GCTCCGCGCGGAGGTATGACG...............................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................ATTTTTGACT-CGTAAGGA-------------------TCA.........................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................GCAAGGGGTTACATCACGT-----TT........................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................T-CGTAAGGA-------------------TCAG--TTCTATC---------------------------------------------------------......................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................TTTATACCATTTTTGACT-CGT....................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TTTCC--GTC-AAATAATGTCAGATTTTGG.............................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................TCCGCGCGGAGGTATGACGTT-CCAAAAC.....................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................AATCGACAAAATGGCAAGGGG..........................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............ATAATGTCAGATTTTGGAATT.........................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................AAATGGCAAGGGGTTACATCACGT-----TTT.......................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TCC--GTC-AAATAATGTCAGATTT................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TTCC--GTC-AAATAATGTCAGATTTTG..............................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................TGACGTT-CCAAAACGACATAG..............	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TTTGACT-CGTAAGGA-------------------TCAG--TTCTA.................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................CTCGGATAATAGCTCCGCGCGG.........................................	22	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................AATAGAGGTCGGTGCGAAAATCGA......................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................TTTTTGACT-CGTAAGGA-------------------TCAG--TT....................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GGGGTTACATCACGT-----TTT.......................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GAATTTTATACCATTTTTGACT-C......................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................TTGGAATTTTATACCATTTTTGAC.........................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
................TAATGTCAGATTTTGGAAT..........................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CGACAAAATGGCAAGGGGTTA.......................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TTTCC--GTC-AAATAATGTCAGA...................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................TGGCATCAAAAAAAGGAAATC..............................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................ATTGGCATCAAAAAAAGGAA.................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................TAGAGGTCGGTGCGAAAATCGAAA----------------------------------------CTT.........................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................ATGGCAAGGGGTTACATCACGT-----TTTTT.....................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TTCC--GTC-AAATAATGTCAGATTT................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TTATACCATTTTTGACT-CGTAA..................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTATGACGTT-CCAAAACG....................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TAATGTCAGATTTTGGAATTTTATAC...................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................AAAATGGCAAGGGGTTACA.....................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TTTTGACCCAAATCGACAAAATGGCAAG.............................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................TTGACT-CGTAAGGA-------------------TCAG--TTCTATC---------------------------------------------------------......................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................CCAAATCGACAAAATGGCAAG.............................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CGACAAAATGGCAAGGGG..........................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droWil2

GTC----------AATTTTTGACCGATTTTTGAAATTCATATATCATTTTATC-CATCAGCA-------------------AATT--GACTTTC---------------------------------------------------------AGTTGGCATTAAAACCTCAAAAAGTAAAATTTTCATCTTTTCTGAGAAAA-------------------------------------------------------------------------------TCAC---------------------------------------------------------------------------GATTTAGTA------------------AAAATTATGTTTTT-TT--------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
....................................TCATATATCATTTTATC-CATCAGCA-------------------A...........................................................................................................................................................................................................................................................................................................................................................	26	13	0.08	1	0	0	0	1	0
.................................................................................AATT--GACTTTC---------------------------------------------------------AGTTGGCA..............................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0

dp5

AATATAA--GTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT------------------------------------------------------------------------------------------TTTACATTCGAAATTAGTTA----AT-------------------------------------------------TATTTTCTGGCGGACTTAAGTCGTT-TCGGAACGACATATCTCCGC--CGTG--	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................AAATTAGTTA----AT-------------------------------------------------TATTTTCTGGCGG.........................................	25	4	1.75	7	0	6	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................AAATTAGTTA----AT-------------------------------------------------TATTTTCTGGCG..........................................	24	4	1.50	6	0	6	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................AAATTAGTTA----AT-------------------------------------------------TATTTTCTGGCGGACT......................................	28	4	1.25	5	0	3	2	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................TTAGTTA----AT-------------------------------------------------TATTTTCTGGCGGACT......................................	25	4	1.25	5	0	0	0	0	0	0	0	4	1	0
......................................................................................................................................................................................................................................................................................................................AAATTAGTTA----AT-------------------------------------------------TATTTTCTGGC...........................................	23	4	1.25	5	0	4	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................AAATTAGTTA----AT-------------------------------------------------TATTTTCTGGCGA.........................................	25	4	0.50	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................AAATTAGTTA----AT-------------------------------------------------TATTTTCTGGCGGA........................................	26	4	0.50	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................AATTAGTTA----AT-------------------------------------------------TATTTTCTGGC...........................................	22	4	0.50	2	0	1	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................TTA----AT-------------------------------------------------TATTTTCTGGCGGACTTAAG..................................	25	4	0.50	2	0	0	0	0	0	0	0	2	0	0
..........................................................................................................................................................................................................................................................................................................................TAGTTA----AT-------------------------------------------------TATTTTCTGGCGGACT......................................	24	4	0.50	2	0	0	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................AATTAGTTA----AT-------------------------------------------------TATTTTCTGGCG..........................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................AGTTA----AT-------------------------------------------------TATTTTCTGGCGGAC.......................................	22	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................TAGTTA----AT-------------------------------------------------TATTTTCTGGCGGAC.......................................	23	4	0.25	1	0	0	0	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................T-------------------------------------------------TATTTTCTGGCGGACTTAAGTCGTT-............................	26	4	0.25	1	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................T-------------------------------------------------TATTTTCTGGCGGACTTAAGTCG...............................	24	4	0.25	1	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................TTA----AT-------------------------------------------------TATTTTCTGGCGGACT......................................	21	4	0.25	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................AAATTAGTTA----AT-------------------------------------------------TATTTTCTGGCGGAC.......................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................TA----AT-------------------------------------------------TATTTTCTGGCGGACTTAAGTCGT..............................	28	4	0.25	1	0	0	0	0	0	0	0	1	0	0

droPer2

GGAA----------TTT--------------------TTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTTTTTTTTTTTTGAGAACTTATTTCGTTTGAAAGCGTCATATCTCCGCTCGGAGACAC---------------------------------------------------------------------------------------------------GGCGGAGTTATGTCGTT-TCATATCGTCATATCTCCGCGCGGAGGT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droKik1

CATTTCCCAAAGCGATTACCATCCGATTTTGGCCATGCAAA----ATTTTTTC-GATGGACAAAAATTGAGTTCAAGGGAGCATTGTGAAAATCGAATCGCCGAGGTTTTTGCCAGTAGGGACAAGGACTTCTTAAGGAGAGGCATATACAAGTTACCATCAAAATGGCAGAAAATCATATCTC---------------------------------------------------------------------------------------CGCCCGGAGA--------------------------------TATGTCA----CT-------------------------------------------------TTTTTTCTGGCGGAGATATGTCGCA-TGAAAACGACATAACTCCACGCGGAGAT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCTCCGCGCAGAGATAAGACGTT-TGAAAACGACATATCTCAGCGCGAAAAT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAACCAT--GGGAAATAATTGTCAGATGTTGGAATGCCATACCTCATTGAATTACGTTATAA-------------------AATT--TCCAATC---------------------------------------------------------GGATGGCATTCACAGCTAAAAATTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TAAT-----GGGAAATAATGGTCCAAATATGGAATGTTATATCTTATTGAACT-CGTAAAAA-------------------CATT--CCCTATC---------------------------------------------------------GATTGGCGTTAAAGTTACGAAAACAAAAAATTTTGCCAATTTTTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--AAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TAAA----------ACT-ATAT-TAATTTTGT--TTTTATTACATTTTGAATT-CAGAAGTT-------------------TCAC--TAAGATCGTTCCATTCAAAAAAT--CATAAAAATAC-----------AAGGA------------------------------------AAAATTTATATTAAAAGTTCAAAATATGACTACAG------------------------------------------------------------------------------------------TTAACATTCAAATCTGTCAAAATAATTATTCCGACTAGTGTACATGGAGGTAAAATATTTATTTTTCAAACGTCATACCTCCGCGCGGAGATATTTCGTTTGCAGAAAG------------GCGGAGAT	Size	Hit Count	Total Norm	Total
No Reads

droYak3

A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCTCCGAGCGGAGGTATGGTGTTTTCTAAACGACATTTCTCC--GCCGAAAC

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

GGGC-----GGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCATGTAGCT-----TTTT-------------------------------------------------TTT-----------------------------------------------------------GACGGAGCTTTTTAGTTTTGTAAATGTCATATCTCCAAGCGGAGTTATAACGTTTTCTTAACGACATTTCTCCGC--CGAA--	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

-11.6	-11.4	-11.3	-11.1

dvi_5708

scaffold_12875:8290385-8290535 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

ATAAAGGCAGTTTATTACAGTCTAAAACCTTAAAATATGGTAAAAACTGAGCATTCCTAGTCAAGATAGTTAACCGTAGTTTTTTTCCTTTAGGTTTTAAAACTGGGTTTAGCTGTTTTACCGTTCCCCAATGTAGTGCAAAAAAAAAAAATTATCTCCAGCCACGCTTTTAGCTTTGAAAAAATAATAGAGCCTATTATCGAGGCGCGCCTCCATACTGCAAGGTTTTGCTGTATCGAGGGGCGCCTCTA **********************************************************************.........................................................((.(((((......)))))..))*************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060679 140x9_testes_total	M047 female body	SRR060677 Argx9_ovaries_total	SRR060684 140x9_0-2h_embryos_total	SRR060678 9x140_testes_total	SRR060659 Argentina_testes_total	SRR060654 160x9_ovaries_total	SRR060673 9_ovaries_total	SRR060670 9_testes_total	SRR060655 9x160_testes_total	SRR060671 9x160_males_carcasses_total	SRR060675 140x9_ovaries_total	SRR060676 9xArg_ovaries_total	SRR060681 Argx9_testes_total	SRR060682 9x140_0-2h_embryos_total	SRR060685 9xArg_0-2h_embryos_total	SRR060686 Argx9_0-2h_embryos_total	SRR060687 9_0-2h_embryos_total
....................................................................................................................TTTACCGTTCCCCAATGTAGTGCA...............................................................................................................	24	0	20	0.60	12	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................CCGTTCCCCAATGTAGTGCAAAA............................................................................................................	23	0	20	0.35	7	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................CCGTTCCCCAATGTAGTGCAA..............................................................................................................	21	0	20	0.20	4	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................AAACTGGGTTTAGCTGTTTTACCGT...............................................................................................................................	25	0	20	0.15	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................ATCGAGGCGCGCCTCCATACT................................	21	0	20	0.10	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................AAAAAAAAAAATTACCTCC............................................................................................	19	1	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0
...............................................TGAGCATTCCTAGTCAAGATA.......................................................................................................................................................................................	21	0	20	0.10	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
.................................AATCTGGTAAAAACGGAGCC......................................................................................................................................................................................................	20	3	20	0.10	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................AAAATATGGTAAAAACTGAGCATTCCTA................................................................................................................................................................................................	28	0	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................CAAGATAGTTAACCGTGGTTT.........................................................................................................................................................................	21	1	11	0.09	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................AGTCAAGATAGTTAACCGT..............................................................................................................................................................................	19	0	11	0.09	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
............................................................TCAAGATAGTTAACCGTAGTT..........................................................................................................................................................................	21	0	12	0.08	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................TTGCTAGTCAAGATAGTTAACCGTAGT...........................................................................................................................................................................	27	1	13	0.08	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................TCCCCAATGTAGTGCAAAAAAAAAAACTT..................................................................................................	29	1	15	0.07	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....AGGCAGTTTGTTACAGTCTAG..................................................................................................................................................................................................................................	21	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TCGAGGCGCGCCTCCATACAG...............................	21	1	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................ACCGTAGTTTTTTTCCTTTAG..............................................................................................................................................................	21	0	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................AGGTTCTAAAACTGGGTTTAGCTGTTT.....................................................................................................................................	27	1	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................CGAGGCGCGCCTCCATACTGC..............................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................TATGGTAAAAACTGAGCATTCCTAGTC.............................................................................................................................................................................................	27	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
....................................................................................................................................................................................................................CCATACTGCAAGGTTTTGCTGT.................	22	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................TTAGGTTTTGAAACTGGGTTTA............................................................................................................................................	22	1	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................GGTAAAAACTGAGCATTCCTA................................................................................................................................................................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................CGTTCCCCAATGTAGTGCAAA.............................................................................................................	21	0	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................TAAAATATGGTAAAAACTGAGCATTCC..................................................................................................................................................................................................	27	0	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0