ID:

dvi_5704

 Coordinate:

scaffold_12875:8289091-8289241 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.7 -6.5 -6.4 -6.3

Flybase annnotation

CDS [Dvir\GJ21644-cds]; exon [dvir_GLEANR_6987:3]; intron [Dvir\GJ21644-in]

Repeatable elements

NameClassFamilyStrand
DMR_DVUnknownUnknown-
mature
  1. scaffold_7810:1123-1142 +
  2. scaffold_10697:512-531 +
  3. scaffold_11406:621-640 +
  4. scaffold_12526:413-432 +
  5. scaffold_12527:292-311 +
  6. scaffold_12527:1628-1647 +
  7. scaffold_12822:4005579-4005598 +
  8. scaffold_12822:4011112-4011131 +
  9. scaffold_12822:4012006-4012025 +
  10. scaffold_12822:4013142-4013161 +
  11. dvi_2783  scaffold_12822:4013546-4013565 +
  12. scaffold_12822:4014971-4014990 +
  13. scaffold_12875:14741603-14741622 +
  14. scaffold_12970:7769003-7769022 +
  15. scaffold_13042:5325-5344 +
  16. scaffold_13047:247214-247233 +
  17. scaffold_13047:2810638-2810657 +
  18. scaffold_13047:14303137-14303156 +
  19. scaffold_13047:17871900-17871919 +
  20. scaffold_13050:3176530-3176549 +
  21. scaffold_12437:919-938 -
  22. scaffold_12942:100128-100147 -
  23. scaffold_12942:100498-100517 -
  24. scaffold_12942:101238-101257 -
  25. scaffold_12942:101978-101997 -
  26. scaffold_12942:103830-103849 -
  27. scaffold_12942:104199-104218 -
  28. scaffold_12942:104939-104958 -
  29. scaffold_12942:105309-105328 -
  30. scaffold_12942:106048-106067 -
  31. scaffold_12942:107158-107177 -
  32. scaffold_12942:108638-108657 -
  33. scaffold_12942:109008-109027 -
  34. scaffold_12942:109748-109767 -
  35. scaffold_12942:142070-142089 -
  36. scaffold_12942:145384-145403 -
  37. scaffold_13224:650-669 -
  38. scaffold_13245:1337-1356 -
  39. scaffold_13254:89-108 -
  40. scaffold_13288:3397-3416 -
  41. scaffold_12942:101608-101627 -
  42. scaffold_12942:102348-102367 -
  43. scaffold_12942:103458-103477 -
  44. scaffold_12942:104569-104588 -
  45. scaffold_12942:105679-105698 -
  46. scaffold_12942:107898-107917 -
  47. scaffold_12942:108268-108287 -
  48. scaffold_12942:109378-109397 -
  49. scaffold_12942:122977-122996 -
  50. scaffold_12942:123717-123736 -
  51. scaffold_12942:124087-124106 -
  52. scaffold_12942:141330-141349 -
  53. scaffold_12942:142810-142829 -
  54. scaffold_13245:597-616 -
  55. scaffold_13254:830-849 -
  56. scaffold_13288:438-457 -
  57. scaffold_13288:1178-1197 -
  58. scaffold_13288:1548-1567 -
  59. scaffold_13288:1918-1937 -
  60. scaffold_13288:2657-2676 -
  61. scaffold_2815:1557-1576 +
  62. scaffold_3811:245-264 +
  63. scaffold_3811:617-636 +
  64. scaffold_10177:348-367 +
  65. scaffold_12039:593-612 +
  66. scaffold_12039:964-983 +
  67. scaffold_12823:11084-11103 +
  68. scaffold_12823:12564-12583 +
  69. scaffold_12823:13304-13323 +
  70. scaffold_12823:167421-167440 +
  71. scaffold_12875:8791211-8791230 +
  72. scaffold_12875:8802568-8802587 +
  73. scaffold_12875:8803478-8803497 +
  74. scaffold_12875:8803848-8803867 +
  75. scaffold_12875:8804793-8804812 +
  76. scaffold_12875:8806075-8806094 +
  77. scaffold_13246:5293-5312 +
  78. scaffold_13246:31661-31680 +
  79. scaffold_13246:33950-33969 +
  80. scaffold_13246:35059-35078 +
  81. scaffold_1052:1263-1282 +
  82. scaffold_5558:8-27 +
  83. scaffold_12799:143186-143205 +
  84. scaffold_12822:1178747-1178766 +
  85. dvi_5704  scaffold_12875:8289155-8289174 +
  86. scaffold_12875:11276173-11276192 +
  87. scaffold_12875:11479117-11479136 +
  88. scaffold_12875:12214164-12214183 +
  89. scaffold_12875:12647511-12647530 +
  90. scaffold_12928:2546420-2546439 +
  91. scaffold_12928:3143504-3143523 +
  92. scaffold_12963:13007776-13007795 +
  93. scaffold_12970:4850079-4850098 +
  94. scaffold_13047:2809686-2809705 +
  95. scaffold_13047:2812134-2812153 +
  96. scaffold_13047:6627012-6627031 +
  97. scaffold_13047:6628944-6628963 +
  98. scaffold_13047:17333605-17333624 +
  99. scaffold_13047:17334063-17334082 +
  100. scaffold_13047:17334484-17334503 +
  101. scaffold_1071:236-255 +
  102. scaffold_1141:1064-1083 +
  103. scaffold_8817:465-484 +
  104. scaffold_10713:578-597 +
  105. scaffold_10714:33-52 +
  106. scaffold_10714:775-794 +
  107. scaffold_11973:354-373 +
  108. scaffold_12033:39-58 +
  109. scaffold_12033:573-592 +
  110. scaffold_12198:942-961 +
  111. scaffold_12822:237677-237696 +
  112. scaffold_12822:265419-265438 +
  113. scaffold_12822:266161-266180 +
  114. scaffold_12822:267326-267345 +
  115. scaffold_12822:301989-302008 +
  116. scaffold_12822:336157-336176 +
  117. scaffold_13218:387-406 +
  118. scaffold_13218:2091-2110 +
  119. scaffold_13246:428109-428128 +
  120. scaffold_13246:439209-439228 +
  121. scaffold_11075:22-41 -
  122. scaffold_12942:99758-99777 -
  123. scaffold_12942:106788-106807 -
  124. scaffold_12942:107528-107547 -
  125. scaffold_12942:122607-122626 -
  126. scaffold_12942:123347-123366 -
  127. scaffold_12942:141700-141719 -
  128. scaffold_12942:142440-142459 -
  129. scaffold_12942:143534-143553 -
  130. scaffold_13224:1020-1039 -
  131. scaffold_13245:227-246 -
  132. scaffold_13245:967-986 -
  133. scaffold_13254:460-479 -
  134. scaffold_13288:2288-2307 -
star
  1. scaffold_167:384-404 +
  2. scaffold_626:56-76 +
  3. scaffold_7129:402-422 +
  4. scaffold_10279:10-30 +
  5. scaffold_10279:696-716 +
  6. scaffold_12822:3776527-3776547 +
  7. scaffold_12822:3777071-3777091 +
  8. scaffold_12822:4006754-4006774 +
  9. scaffold_12855:1076-1096 +
  10. dvi_5704  scaffold_12875:8289113-8289133 +
  11. dvi_5708  scaffold_12875:8290407-8290427 +
  12. scaffold_12875:8292613-8292633 +
  13. scaffold_12875:10933761-10933781 +
  14. scaffold_12875:11276131-11276151 +
  15. scaffold_12875:11276897-11276917 +
  16. scaffold_12875:14994517-14994537 +
  17. scaffold_13042:1715120-1715140 +
  18. scaffold_13042:1730081-1730101 +
  19. scaffold_13047:9368949-9368969 +
  20. scaffold_13047:17907450-17907470 +
  21. scaffold_747:36-56 -
  22. scaffold_747:1108-1128 -
  23. scaffold_6391:2622-2642 -
  24. scaffold_6391:3096-3116 -
  25. scaffold_6391:5011-5031 -
  26. scaffold_10322:294665-294685 -
  27. scaffold_10322:294835-294855 -
  28. scaffold_12723:5166122-5166142 -
  29. scaffold_12726:2363534-2363554 -
  30. scaffold_12823:771825-771845 -
  31. scaffold_12875:9433906-9433926 -
  32. scaffold_12875:9434381-9434401 -
  33. scaffold_12875:16316007-16316027 -
  34. scaffold_12928:1296866-1296886 -
  35. scaffold_12928:6788159-6788179 -
  36. scaffold_12970:5373804-5373824 -
  37. scaffold_12970:5375073-5375093 -
  38. scaffold_12970:5377583-5377603 -
  39. scaffold_12970:8261238-8261258 -
  40. scaffold_13042:1722028-1722048 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TATTTCCGTCAAATAATGTCAGATTTTCGAATCTTATACCATTTTTGACTCGTAAGGATCAGTTCTATTAATTGGCATCAAAAAAAGGAAATCCAGAATTTTGACCCAAATCGACAAAATGGCAAGGGGTTACATCACGTTTTTTTTTTTTAATAGAAGTCGGTGCGAAAATCGAAACTTTTTTATTATCTCGGATAATAGCTCCGCGCGGAGGTATGACGTTCCAAAACGACATAACTCCCCGCGGAGAT
************************************************************************((............................(((((...((........))....))))).))********************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR060676
9xArg_ovaries_total
 SRR060674
9x140_ovaries_total
 M047
female body
 SRR060675
140x9_ovaries_total
 SRR060656
9x160_ovaries_total
 SRR060664
9_males_carcasses_total
 SRR060681
Argx9_testes_total
 SRR060677
Argx9_ovaries_total
 SRR060667
160_females_carcasses_total
 V116
male body		 SRR060655
9x160_testes_total
 SRR060672
9x160_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060680
 9xArg_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060688
160_ovaries_total
 M028
head
 SRR060657
140_testes_total
 SRR060659
Argentina_testes_total
 SRR060665
9_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060673
9_ovaries_total
 SRR060678
9x140_testes_total
 SRR060683
160_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR1106720
embryo_8-10h
..............................................................................................................................................................................................................................TCCAAAACGACATAACTCCC......... 20 0 20 0.35 7 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CAAAATGGCAAGGGGTTACA..................................................................................................................... 20 0 20 0.15 3 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................TTTGACCCAAATCGACAAAATGGCA............................................................................................................................... 25 0 20 0.15 3 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................CTTATACCATTTTGGACTCGTAAGGAT................................................................................................................................................................................................ 27 1 20 0.15 3 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTATACCATTTTTGACTCGTAAGGA................................................................................................................................................................................................. 25 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTATACCATTTTTGACTCGTAAGGAT................................................................................................................................................................................................ 26 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TATTATCTCGGATAATAGCTCCGCGC.......................................... 26 0 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................ATCAAAAAAAGGAAAGTCAGA.......................................................................................................................................................... 21 2 9 0.11 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTATACCATTTTTGACTCGTAAGG.................................................................................................................................................................................................. 24 0 20 0.10 2 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GCGCGGAGGTATGACGTTCCA......................... 21 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.........................................TTTTTGACTCGTAAGGATCAGTTCTA........................................................................................................................................................................................ 26 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0
.................................................TCGTAAGGATCAGTTCTTTAAA.................................................................................................................................................................................... 22 2 14 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TTGTTAATCGAAGTCGGTA...................................................................................... 19 3 19 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GCTCCGCGCGGAGGTGTGACGT............................. 22 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................TTTGACCCAAATCGACAAAATGGCAA.............................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AATGGCAAGGGGTTACATCACGTT.............................................................................................................. 24 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................CTCGGATAATAGCTCCGCGCGG........................................ 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....TCCGTCAAATAATGTCAGATTT................................................................................................................................................................................................................................. 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
................................CTTATACCATTTTGGACTCGTAAGG.................................................................................................................................................................................................. 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TATACCATTTTTGACTCGTA..................................................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................AAAATGGCAAGGGGTTACATCACG................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................AAATGGCAAGGGGTTACATCACGTTTT............................................................................................................ 27 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..TTTCCGTCAAATAATGTCAGA.................................................................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................TTTTTGACTCGTAAGGATCAGTACTATT...................................................................................................................................................................................... 28 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AATAGCTCCGCGCGGATGTAT.................................. 21 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................ATGGCAAGGGGTTACATCACGTTTTTT.......................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................CTTATACCATTTTGGACTCGTAAGGATA............................................................................................................................................................................................... 28 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................ATTAGAAGTCGCTGCGCAAA................................................................................ 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TTTAAATAGAAGTCGGTGCGAAA................................................................................. 23 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CTCCGCGCGGAGGTATGACGTTCC.......................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................TTGACCCAAATCGACAAAATGGC................................................................................................................................ 23 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..TTTCCGTCAAATAATGTCAGATTT................................................................................................................................................................................................................................. 24 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................CCCAAATCGACAAAATGGCAAGGG........................................................................................................................... 24 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TTTTGACCCAAATCGACAAAATGGC................................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................TTTGACTCGTAAGGATCAGTTCTA........................................................................................................................................................................................ 24 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................TTTTGACTCGTAAGGATCAGT............................................................................................................................................................................................ 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...TTCCGTCAAATAATGTCAGATTTTTGA............................................................................................................................................................................................................................. 27 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GGAGGTATGACGTTCCAAAACG.................... 22 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................CTTATACCATTTTGGACTCGTAAGGA................................................................................................................................................................................................. 26 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TTTTTATTATATGGGATAAT.................................................... 20 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TCCGCGCGGAGGTATGACGTTCCAAAAC..................... 28 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................TGGCATCAAAAAAAGGAAATC.............................................................................................................................................................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...TTCCGTCAAATAATGTCAGATTT................................................................................................................................................................................................................................. 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GCTCCGCGCGGAGGTATGACG.............................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................TACCATTTTTGACTCGTAAGGATCAG............................................................................................................................................................................................. 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTATACCATTTTAGACTCGTAAGGATC............................................................................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TATACCATTTTTGACTCGTAAGGATCAG............................................................................................................................................................................................. 28 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TTGACTCGTAAGGATCAGTTC.......................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..TTTCCGTCAGATAATGTCAGATTTT................................................................................................................................................................................................................................ 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................AAATGGCAAGGGGTTACATCACG................................................................................................................ 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................AAATCGACAAAATGGCAAGGG........................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CAAAATGGCAAGGGGTTACAT.................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TCGACAAAATGGCAAGGGGTTAC...................................................................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AATGGCAAGGGGTTACATCACG................................................................................................................ 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................TATACCATTTTTGACTCGTAAGGATCAGT............................................................................................................................................................................................ 29 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................AGTAGCTCCGCGCGGAGGTATG................................. 22 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TAGCTCCGCGCGGATGTATG................................. 20 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................ATACCATTTTTGACTCGTAAGGATCA.............................................................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTATACCATTCTTGACTCGTAAGGAT................................................................................................................................................................................................ 26 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................ATCGACAAAATGGCAAGGGGTTAC...................................................................................................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ATAAAGGCAGTTTATTACAGTCTAAAAGCTTAGAATATGGTAAAAACTGAGCATTCCTAGTCAAGATAATTAACCGTAGTTTTTTTCCTTTAGGTCTTAAAACTGGGTTTAGCTGTTTTACCGTTCCCCAATGTAGTGCAAAAAAAAAAAATTATCTTCAGCCACGCTTTTAGCTTTGAAAAAATAATAGAGCCTATTATCGAGGCGCGCCTCCATACTGCAAGGTTTTGCTGTATTGAGGGGCGCCTCTA
*********************************************************************************************************************((............................(((((...((........))....))))).))************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR060679
140x9_testes_total
 M047
female body
 GSM1528803
follicle cells		 SRR060684
140x9_0-2h_embryos_total
 SRR060677
Argx9_ovaries_total
 SRR060655
9x160_testes_total
 V047
embryo
 SRR060686
Argx9_0-2h_embryos_total
 SRR060656
9x160_ovaries_total
 SRR060658
140_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060688
160_ovaries_total
....................................................................................................................TTTACCGTTCCCCAATGTAGTGCA............................................................................................................... 24 0 20 0.60 12 12 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................CCGTTCCCCAATGTAGTGCAAAA............................................................................................................ 23 0 20 0.35 7 0 7 0 0 0 0 0 0 0 0 0 0
..................................................................................TTTTCCTTTCGGTCTTAAAGT.................................................................................................................................................... 21 3 20 0.20 4 0 0 4 0 0 0 0 0 0 0 0 0
........................................................................................................................CCGTTCCCCAATGTAGTGCAA.............................................................................................................. 21 0 20 0.20 4 0 0 0 4 0 0 0 0 0 0 0 0
...................................................................................................AAACTGGGTTTAGCTGTTTTACCGT............................................................................................................................... 25 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................ATCGAGGCGCGCCTCCATACT................................ 21 0 20 0.10 2 0 1 0 0 1 0 0 0 0 0 0 0
................................................................................CCTTTTCCTTTAGGTCTTAGA...................................................................................................................................................... 21 3 13 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0
..............................TAGAAAATGGTAAAAACTGAGCATT.................................................................................................................................................................................................... 25 1 15 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................TCCCCAATGTAGTGCAAAAAAAAAAACTT.................................................................................................. 29 1 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................GTTTTGCTGTATTGAGGGGCG...... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
.............................................ACTGAGCATTCCTAGTCAAGATA....................................................................................................................................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
......................................GGTAAAAACTGAGCATTCCTAGTC............................................................................................................................................................................................. 24 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................CGTTCCCCAATGTAGTGCAAA............................................................................................................. 21 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CATACTGCAAGGTTTTGCTGTATTG............. 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TGCTGTATTGAGGGGCGCCTCTA 23 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................GAGGCGCGCCTCCATACT................................ 18 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CGAGGCGCGCCTCCATACTGC.............................. 21 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................GAGGCGCGCCTCCATACTGC.............................. 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................TCGAGGCGCGCCTCCATACAG............................... 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:8289041-8289291 + dvi_5704 TATTTCCGTCA---------A-AT-AA-TGTCAGATTTTCGAATCTTATACCATTTTTGACTCGTAAGGATCAGTTCTATTAATTGGCATCAAAAAAAGGAAATCCAGAATTTTGACCCAAATCGACAAAATGGCAAG--------GG-----------GTTAC----------------------ATCACGTT--------------------TTTTTTTTTTAATAGAAGTCGGTGCGAAAATCGAAACTTTTTT--ATTATCTC---------G-----------------------G------AT----AATAGCTCCGC-----------GCGGAGGTATGA-------------------------CGTT-CCAAAACGACATAACTCCCCGCGGAGAT----
droWil2 scf2_1100000004513:5574976-5575088 - GGA------------------------------------------------------------------------------------------------------------------------------------------------------------GATAT----------------------GTGGCATT--------------------TTTAACGACTGAGA------------------------------------------TATGTCGTTGTAAAACGACATATCATCGCCG-------------------------GTGATCTGCGCGGAGATATGT-------------------------CGTT-TCAAAACGTCATATCTCCAC-CGTTAGA----
dp5 4_group4:1063110-1063206 - AAGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTCGAAACGACATATCTCCGCCGTGTCACAAACGACATATCTCCGC-----------GCGGAGTTATGA-------------------------CGTT-TTGAGACGACATATCTCCGCGCGGAGGT----
droPer2 scaffold_125:76713-76829 - GGA------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTT----------------------TTCGCTTT--------------------TTTTTTTTTTGAGA----AC--------------------------T---------TATTTCGTTTGAAAGCGTCATA-------------------------TCTCCGCTCGGAGACACGGCGGAGTTATGT-------------------------CGTT-TCATATCGTCATATCTCCGCGCGGAGGT----
droKik1 scf7180000299347:6245-6480 + CATTGTG--AA-----------------AATCGAATCGCCGAGGTTTTTGCCAGTAGGGAC------AAGGACTTCTTAAGGAGAGGCATATACAAGTT----------------------ACCATCAAAATGGCAGAAAATCATATCTCCGCCCG-GAGATAT----------------------GTCACTTT--------------------TTTTCTGGCGGAGA------------------------------------------TATGTCGCATGAAAACGACATA-------------------------ACTCCAC-----------GCGGAGATATGTCATTTTTTTCCCGGCGGAGAGATGTTGTT-GTAAAACGACATAGCTCCGCGCGGAGAT----
droFic1 scf7180000453342:52898-53009 + CAAAAACCACATACATTGACAT-------ATAATATTATGGAATGTTATACTTTTTTGAGCTCGTAATAATATTTCCCATCGACTGGTATTCAAATCTAAAATTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGTACATTAAC----
droEle1 scf7180000491271:9631-9684 - ATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCCGC-----------GCAGAGATAAGA-------------------------CGTT-TGAAAACGACATATCTCAGCGCGAAAAT----
droRho1 scf7180000777200:406684-406935 - CAAATCCTGAG---------AAAT-AATGGTCTCATGTTCGAATGGCATACCTTGTTGAATTCGTTATAAAATTTCCAATCGAGTGGCATTCACAGCTCAAAATTTTCATTTTGGTCGATTTTTCGCAAAAATAGATG--------AT-----------GTAACCCCTTATCAAAACTGCCGAAAACCGGAGATCCGGAAATATTAGCTTTTTTCTTGGTTTTTTGAGCAAATCCCT---------------------------------------G-----------------------G------GA----AATAA-------------------------------------------TGGTCA-----CATG-TTGGAATGGCATACCT---TGTTGAATT----
droBia1 scf7180000301585:63581-63669 + TTTTTATCTGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA----CCGACTCGATACTTTAAGTTATTAA--TTTATATG---------G---GGTAACGACATA-------------------------TCTCCGC-----------G-----------------------------------------------CGACATATCTCCGCACGGAGAT----
droTak1 scf7180000415397:3816-3935 + GATTTTAC-------------------------------CAAGTTTTTTTTT------------------------------------GTGTGTAGGCT----------------------TTCATTGGAA-----------------TTCGCTCGCTAAATAT----------------------GGTATTTT--------------------TGTATTGT------------------------------------------ATGTATT-----------------------------------------------TTGTCA-----------GCGGAGATATGT-------------------------CGT---------GATTTATTT---GGCGGAGAT----
droYak3 2R:1313745-1313797 + ATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCCGA-----------GCGGAGGTATGG-------------------------TGTTTTCTAAACGACATTTCTCC--GCCGAAAC----
droEre2 scaffold_4690:1985680-1985944 - CATAACTAAGA---------A-ATTAGTTGTCCAAATATAGAATGTCATTCACCGTTGAATTCGTAATGAAATTTCCAACAAAGTGGCATTCAAGCCTAGAAATGTAAAATTTTCACGATTTTTCGCAAAAAATTATG--------AT-----------GTTACCCCTTTCCGAAAATGC-GAAAAATGGTGAA--------------------ATTTTTTTTTTGTGAAAATCCGTACAAAAGTGATTGTTTTTTGTCCATAACTA---------A-----------------------G------AA----AATAG-------------------------------------------TTGTCC-----AAAT-ATAGAATGCCATACAC---CGTTGAATTCGTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TATTTCCGTCA---------A-AT-AA-TGTCAGATTTTCGAATCTTATACCATTTTTGACTCGTAAGGATCAGTTCTATTAATTGGCATCAAAAAAAGGAAATCCAGAATTTTGACCCAAATCGACAAAATGGCAAG--------GG-----------GTTAC----------------------ATCACGTT--------------------TTTTTTTTTTAATAGAAGTCGGTGCGAAAATCGAAACTTTTTT--ATTATCTC---------G-----------------------G------AT----AATAGCTCCGC-----------GCGGAGGTATGA-------------------------CGTT-CCAAAACGACATAACTCCCCGCGGAGAT----SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................T-CCAAAACGACATAACTCCC.............20200.357007000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................CAAAATGGCAAG--------GG-----------GTTAC----------------------A..............................................................................................................................................................................................................................20200.153000000000000000000000000030000000000000000000000000000000000000
...............................................................................................................TTTGACCCAAATCGACAAAATGGCA.................................................................................................................................................................................................................................................................................25200.153000000300000000000000000000000000000000000000000000000000000000
.............................................TTATACCATTTTTGACTCGTAAGGA...................................................................................................................................................................................................................................................................................................................................................25200.153000000000000000000000000003000000000000000000000000000000000000
.............................................TTATACCATTTTTGACTCGTAAGGAT..................................................................................................................................................................................................................................................................................................................................................26200.153000000000000000000000000003000000000000000000000000000000000000
................................................................................................................................................................................................................................................................T--ATTATCTC---------G-----------------------G------AT----AATAGCTCCGC-----------GC........................................................................2670.141000000000000000000000000100000000000000000000000000000000000000
.............................................TTATACCATTTTTGACTCGTAAGG....................................................................................................................................................................................................................................................................................................................................................24200.102000000000000000000000010001000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................GC-----------GCGGAGGTATGA-------------------------CGTT-CCA.............................21200.102000000000000000000000000000001000100000000000000000000000000000
.....................................................TTTTTGACTCGTAAGGATCAGTTCTA..........................................................................................................................................................................................................................................................................................................................................26200.102000000000000000000000000000000000010100000000000000000000000000
...............................................................................................................TTTGACCCAAATCGACAAAATGGCAA................................................................................................................................................................................................................................................................................26200.051000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................................AATGGCAAG--------GG-----------GTTAC----------------------ATCACGTT--------------------...................................................................................................................................................................................................24200.051000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................................................................CTC---------G-----------------------G------AT----AATAGCTCCGC-----------GCGG......................................................................22200.051000000010000000000000000000000000000000000000000000000000000000
....TCCGTCA---------A-AT-AA-TGTCAGATTT...................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000000000000000000100000000000000
..............................................TATACCATTTTTGACTCGTA.......................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................AAAATGGCAAG--------GG-----------GTTAC----------------------ATCACG.........................................................................................................................................................................................................................24200.051000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................AAATGGCAAG--------GG-----------GTTAC----------------------ATCACGTT--------------------TT.................................................................................................................................................................................................27200.051000000000000000000000000000000001000000000000000000000000000000
..TTTCCGTCA---------A-AT-AA-TGTCAGA......................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................ATGGCAAG--------GG-----------GTTAC----------------------ATCACGTT--------------------TTTT...............................................................................................................................................................................................27200.051000000000000000000000000001000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................CTCCGC-----------GCGGAGGTATGA-------------------------CGTT-CC..............................24200.051010000000000000000000000000000000000000000000000000000000000000
................................................................................................................TTGACCCAAATCGACAAAATGGC..................................................................................................................................................................................................................................................................................23200.051000000000000001000000000000000000000000000000000000000000000000
..TTTCCGTCA---------A-AT-AA-TGTCAGATTT...................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000010000000000000000000000000000000000000
....................................................................................................................CCCAAATCGACAAAATGGCAAG--------GG-----------..........................................................................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TTTTGACCCAAATCGACAAAATGGC..................................................................................................................................................................................................................................................................................25200.051000000000000000000000000001000000000000000000000000000000000000
.......................................................TTTGACTCGTAAGGATCAGTTCTA..........................................................................................................................................................................................................................................................................................................................................24200.051000000100000000000000000000000000000000000000000000000000000000
......................................................TTTTGACTCGTAAGGATCAGT..............................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000100000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................GGAGGTATGA-------------------------CGTT-CCAAAACG........................22200.051000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................TCCGC-----------GCGGAGGTATGA-------------------------CGTT-CCAAAAC.........................28200.051000000000000000000000000000000100000000000000000000000000000000
....................................................................................TGGCATCAAAAAAAGGAAATC................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000001000000000000000000000000000000000000000
...TTCCGTCA---------A-AT-AA-TGTCAGATTT...................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000100000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................GCTCCGC-----------GCGGAGGTATGA-------------------------CG...................................21200.051000000000100000000000000000000000000000000000000000000000000000
................................................TACCATTTTTGACTCGTAAGGATCAG...............................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000001000000000000000000000000000000
..............................................TATACCATTTTTGACTCGTAAGGATCAG...............................................................................................................................................................................................................................................................................................................................................28200.051000000000000000000000000001000000000000000000000000000000000000
........................................................TTGACTCGTAAGGATCAGTTC............................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000010000000000000000000000000000000
................................................................................................................................AAATGGCAAG--------GG-----------GTTAC----------------------ATCACG.........................................................................................................................................................................................................................23200.051000000000000000000000000000000000000001000000000000000000000000
.......................................................................................................................AAATCGACAAAATGGCAAG--------GG-----------..........................................................................................................................................................................................................................................................21200.051000000000000000000000000000000100000000000000000000000000000000
..............................................................................................................................CAAAATGGCAAG--------GG-----------GTTAC----------------------AT.............................................................................................................................................................................................................................21200.051000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................TCGACAAAATGGCAAG--------GG-----------GTTAC----------------------...............................................................................................................................................................................................................................23200.051000001000000000000000000000000000000000000000000000000000000000
.................................................................................................................................AATGGCAAG--------GG-----------GTTAC----------------------ATCACG.........................................................................................................................................................................................................................22200.051000000000000000100000000000000000000000000000000000000000000000
..............................................TATACCATTTTTGACTCGTAAGGATCAGT..............................................................................................................................................................................................................................................................................................................................................29200.051000000000000000000000000000010000000000000000000000000000000000
...............................................ATACCATTTTTGACTCGTAAGGATCA................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................ATCGACAAAATGGCAAG--------GG-----------GTTAC----------------------...............................................................................................................................................................................................................................24200.051000000000000000000000000000001000000000000000000000000000000000
droWil2
GGA------------------------------------------------------------------------------------------------------------------------------------------------------------GATAT----------------------GTGGCATT--------------------TTTAACGACTGAGA------------------------------------------TATGTCGTTGTAAAACGACATATCATCGCCG-------------------------GTGATCTGCGCGGAGATATGT-------------------------CGTT-TCAAAACGTCATATCTCCAC-CGTTAGA----SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................................................................................................................................................TGCGCGGAGATATGT-------------------------CGTT-TCAAAACG........................27200.5511010001
GGA------------------------------------------------------------------------------------------------------------------------------------------------------------GATAT----------------------GTGGCATT--------------------TTT................................................................................................................................................................................................1930.33101000
..........................................................................................................................................................................................................................................................................................................................................TCTGCGCGGAGATATGT-------------------------CGTT-TCAAAA..........................27190.32615000
............................................................................................................................................................................................................................................................................................................................................TGCGCGGAGATATGT-------------------------CGTT-TCAAAA..........................25200.20404000
......................................................................................................................................................................................................................................................................................TGTAAAACGACATATCATCGCCG-------------------------GTGA...............................................................................27130.15202000
............................................................................................................................................................................................................................................................................................................................................TGCGCGGAGATATGT-------------------------CGTT-TCA.............................22200.10202000
..................................................................................................................................................................................................................................................................................................TATCATCGCCG-------------------------GTGATCTGCGCGGAGA...................................................................27190.05110000
...........................................................................................................................................................................................................................................................................................................................................CTGCGCGGAGATATGT-------------------------CGTT-TCAAAAC.........................27190.05101000
...........................................................................................................................................................................................................................................................................................................................................CTGCGCGGAGATATGT-------------------------CGTT-TCA.............................23190.05101000
..........................................................................................................................................................................................................................................................................................................................................TCTGCGCGGAGATATGT-------------------------CGTT-TCAAA...........................26190.05101000
..........................................................................................................................................................................................................................................................................................................................................TCTGCGCGGAGATATGT-------------------------CGTT-TCA.............................24190.05101000
........................................................................................................................................................................................................................................................................................................................................GATCTGCGCGGAGATATGT-------------------------CGT..................................22200.05100010
......................................................................................................................................................................................................................................................................................................................................................................................TT-TCAAAACGTCATATCTC...............19200.05100010
dp5
AAGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTCGAAACGACATATCTCCGCCGTGTCACAAACGACATATCTCCGC-----------GCGGAGTTATGA-------------------------CGTT-TTGAGACGACATATCTCCGCGCGGAGGT----SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................CAAACGACATATCTCCGC-----------GCG.......................................................................21187.891420124000041310
..............................................................................................................................................................................................................................................................................................................................CTCCGC-----------GCGGAGTTATGA-------------------------CGT..................................2123.0060410100000
.................................................................................................................................................................................................................................................................................................................ACAAACGACATATCTCCGC-----------GC........................................................................21192.6851035000001600
................................................................................................................................................................................................................................................................................................................CACAAACGACATATCTCCGC-----------G.........................................................................21132.002602100001400
.............................................................................................................................................................................................................................................................................................................................TCTCCGC-----------GCGGAGTTATGA-------------------------CG...................................2121.0020100000010
.....................................................................................................................................................................................................................................................................................TTTCGAAACGACATATCTCCGC..............................................................................................................2231.0030300000000
.................................................................................................................................................................................................................................................................................................................ACAAACGACATATCTCCGC-----------GCG.......................................................................22180.831501300000200
.................................................................................................................................................................................................................................................................................................................ACAAACGACATATCTCCGC-----------G.........................................................................20190.74140900000500
.....................................................................................................................................................................................................................................................................................TTTCGAAACGACATATCTCC................................................................................................................2030.6720110000000
.......................................................................................................................................................................................................................................................................................TCGAAACGACATATCTCCGCC.............................................................................................................2130.6720200000000
...TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTCGAAACGACATATCTCCGC..............................................................................................................2530.6720200000000
..................................................................................................................................................................................................................................................................................................................CAAACGACATATCTCCGC-----------GC........................................................................20190.631201110000000
.................................................................................................................................................................................................................................................................................................................ACAAACGACATATCTCCGC-----------GCGGAGT...................................................................2620.5010100000000
..............................................................................................................................................................................................................................................................................................................................CTCCGC-----------GCGGAGTTATGA-------------------------CG...................................2020.5010100000000
...................................................................................................................................................................................................................................................................................................................AAACGACATATCTCCGC-----------GCG.......................................................................20180.5090900000000
...............................................................................................................................................................................................................................................................................................................................TCCGC-----------GCGGAGTTATGA-------------------------CGTT-................................2120.5010100000000
............................................................................................................................................................................................................................................................................................................................................................................................AGACGACATATCTCCGCGCGG........2120.5010100000000
...............................................................................................................................................................................................................................................................................................................................TCCGC-----------GCGGAGTTATGA-------------------------CGG..................................2020.5010100000000
............................................................................................................................................................................................................................................................................................................................ATCTCCGC-----------GCGGAGTTATGA-------------------------CGGG-................................2420.5010100000000
.....................................................................................................................................................................................................................................................................................................................ACGACATATCTCCGC-----------GCGGAGT...................................................................2220.5010000100000
............................................................................................................................................................................................................................................................................................................................ATCTCCGC-----------GCGGAGTTATGA-------------------------.....................................2020.5010100000000
................................................................................................................................................................................................................................................................................................................CACAAACGACATATCTCCGC-----------..........................................................................20130.3850500000000
.......................................................................................................................................................................................................................................................................................TCGAAACGACATATCTCCGCCGT...........................................................................................................2330.3310100000000
...TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTCGAAACGACATATCTCCGCCG............................................................................................................2730.3310100000000
.....................................................................................................................................................................................................................................................................................TTTCGAAACGACATATCTCCG...............................................................................................................2130.3310100000000
.....................................................................................................................................................................................................................................................................................TTTCGAAACGACATATCTCCGCCGTG..........................................................................................................2630.3310100000000
....................................................................................................................................................................................................................................................................................GTTTCGAAACGACATATCTCC................................................................................................................2130.3310100000000
.......................................................................................................................................................................................................................................................................................TCGAAACGACATATCTCCGC..............................................................................................................2030.3310100000000
.....................................................................................................................................................................................................................................................................................TTTCGAAACGACATATCTCCGCCG............................................................................................................2430.3310100000000
..............................................................................................................................................................................................................................................................................................................GTCACAAACGACATATCTCCGC-----------GCGG......................................................................2670.2920200000000
..................................................................................................................................................................................................................................................................................................................CAAACGACATATCTCCGC-----------G.........................................................................19190.2650500000000
...............................................................................................................................................................................................................................................................................................................TCACAAACGACATATCTCCGC-----------GC........................................................................2380.2520200000000
..................................................................................................................................................................................................................................................................................................................CAAACGACATATCTCCGC-----------GCGT......................................................................22180.2240400000000
...................................................................................................................................................................................................................................................................................................................AAACGACATATCTCCGC-----------GCGGA.....................................................................22140.2130200010000
................................................................................................................................................................................................................................................................................................................CACAAACGACATATCTCCGC-----------GT........................................................................22130.1520200000000
....................................................................................................................................................................................................................................................................................................TCTCCGCCGTGTCACAAACGA................................................................................................2170.1410100000000
....................................................................................................................................................................................................................................................................................................TCTCCGCCGTGTCACAAACGACATATC..........................................................................................2770.1410100000000
....................................................................................................................................................................................................................................................................................................................AACGACATATCTCCGC-----------GCGGA.....................................................................21140.1420200000000
.............................................................................................................................................................................................................................................................................................................TGTCACAAACGACATATCTCC.......................................................................................2180.1310100000000
...............................................................................................................................................................................................................................................................................................................TCACAAACGACATATCTCCGC-----------..........................................................................2180.1310100000000
.............................................................................................................................................................................................................................................................................................CGACATATCTCCGCCGTGTCACAAA...................................................................................................2580.1310000000010
................................................................................................................................................................................................................................................................................................................CACAAACGACATATCTCCGC-----------GCGG......................................................................2490.1110100000000
...................................................................................................................................................................................................................................................................................................................AAACGACATATCTCCGC-----------GCGT......................................................................21180.1120200000000
...................................................................................................................................................................................................................................................................................................................AAACGACATATCTCCGC-----------GC........................................................................19190.1120200000000
.................................................................................................................................................................................................................................................................................................................ACAAACGACATATCTCCGC-----------..........................................................................19190.1120200000000
...........................................................................................................................................................................................................................................................................................................................TATCTCCGC-----------GCGGAGTTATGT-------------------------A....................................22110.0910100000000
................................................................................................................................................................................................................................................................................................................CACAAACGACATATCTCCGC-----------GCG.......................................................................23120.0810100000000
................................................................................................................................................................................................................................................................................................................CACAAACGACATATCTCCGC-----------GC........................................................................22130.0810100000000
..........................................................................................................................................................................................................................................................................................AAACGACATATCTCCGCCGTG..........................................................................................................21130.0810100000000
................................................................................................................................................................................................................................................................................................................CACAAACGACATATCTCC.......................................................................................18140.0710000000100
................................................................................................................................................................................................................................................................................................................CACAAACGACATATCTCCG......................................................................................19140.0710100000000
...................................................................................................................................................................................................................................................................................................................AAACGACATATCTCCGC-----------GCGG......................................................................21140.0710100000000
.................................................................................................................................................................................................................................................................................................................ACAAACGACATATCTCCGC-----------GCGG......................................................................23140.0710100000000
....................................................................................................................................................................................................................................................................................................................AACGACATATCTCCGC-----------GCGG......................................................................20140.0710100000000
..................................................................................................................................................................................................................................................................................................................CAAACGACATATCTCCGC-----------GCGG......................................................................22140.0710000001000
.....................................................................................................................................................................................................................................................................................................................ACGACATATCTCCGC-----------GCGGAG....................................................................21160.0610100000000
..............................................................................................................................................................................................................................................................................................................................................................................................ACGACATATCTCCGCGCGGAG......21160.0610100000000
..................................................................................................................................................................................................................................................................................................................CAAACGACATATCTCCGC-----------GT........................................................................20190.0510100000000
.........................................................................................................................................................................................................................................................................................................................CATATCTCCGC-----------GCGGA.....................................................................16200.0510000000010
droPer2
GGA------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTT----------------------TTCGCTTT--------------------TTTTTTTTTTGAGA----AC--------------------------T---------TATTTCGTTTGAAAGCGTCATA-------------------------TCTCCGCTCGGAGACACGGCGGAGTTATGT-------------------------CGTT-TCATATCGTCATATCTCCGCGCGGAGGT----SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droKik1
CATTGTG--AA-----------------AATCGAATCGCCGAGGTTTTTGCCAGTAGGGAC------AAGGACTTCTTAAGGAGAGGCATATACAAGTT----------------------ACCATCAAAATGGCAGAAAATCATATCTCCGCCCG-GAGATAT----------------------GTCACTTT--------------------TTTTCTGGCGGAGA------------------------------------------TATGTCGCATGAAAACGACATA-------------------------ACTCCAC-----------GCGGAGATATGTCATTTTTTTCCCGGCGGAGAGATGTTGTT-GTAAAACGACATAGCTCCGCGCGGAGAT----SizeHit CountTotal NormTotal
No Reads
droFic1
CAAAAACCACATACATTGACAT-------ATAATATTATGGAATGTTATACTTTTTTGAGCTCGTAATAATATTTCCCATCGACTGGTATTCAAATCTAAAATTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGTACATTAAC----SizeHit CountTotal NormTotal
No Reads
droEle1
ATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCCGC-----------GCAGAGATAAGA-------------------------CGTT-TGAAAACGACATATCTCAGCGCGAAAAT----SizeHit CountTotal NormTotal
No Reads
droRho1
CAAATCCTGAG---------AAAT-AATGGTCTCATGTTCGAATGGCATACCTTGTTGAATTCGTTATAAAATTTCCAATCGAGTGGCATTCACAGCTCAAAATTTTCATTTTGGTCGATTTTTCGCAAAAATAGATG--------AT-----------GTAACCCCTTATCAAAACTGCCGAAAACCGGAGATCCGGAAATATTAGCTTTTTTCTTGGTTTTTTGAGCAAATCCCT---------------------------------------G-----------------------G------GA----AATAA-------------------------------------------TGGTCA-----CATG-TTGGAATGGCATACCT---TGTTGAATT----SizeHit CountTotal NormTotal
No Reads
droBia1
TTTTTATCTGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA----CCGACTCGATACTTTAAGTTATTAA--TTTATATG---------G---GGTAACGACATA-------------------------TCTCCGC-----------G-----------------------------------------------CGACATATCTCCGCACGGAGAT----SizeHit CountTotal NormTotal
No Reads
droTak1
GATTTTAC-------------------------------CAAGTTTTTTTTT------------------------------------GTGTGTAGGCT----------------------TTCATTGGAA-----------------TTCGCTCGCTAAATAT----------------------GGTATTTT--------------------TGTATTGT------------------------------------------ATGTATT-----------------------------------------------TTGTCA-----------GCGGAGATATGT-------------------------CGT---------GATTTATTT---GGCGGAGAT----SizeHit CountTotal NormTotal
No Reads
droYak3
ATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCCGA-----------GCGGAGGTATGG-------------------------TGTTTTCTAAACGACATTTCTCC--GCCGAAAC----SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
CATAACTAAGA---------A-ATTAGTTGTCCAAATATAGAATGTCATTCACCGTTGAATTCGTAATGAAATTTCCAACAAAGTGGCATTCAAGCCTAGAAATGTAAAATTTTCACGATTTTTCGCAAAAAATTATG--------AT-----------GTTACCCCTTTCCGAAAATGC-GAAAAATGGTGAA--------------------ATTTTTTTTTTGTGAAAATCCGTACAAAAGTGATTGTTTTTTGTCCATAACTA---------A-----------------------G------AA----AATAG-------------------------------------------TTGTCC-----AAAT-ATAGAATGCCATACAC---CGTTGAATTCGTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................TGAAATTTCCAACAAAGTGGCATT..............................................................................................................................................................................................................................................................................................................................24200.2555000000
........................................................................................................................................................................................................................................TCCGTACAAAAGTGATTGTTTTTTG........................................................................................................................................................25200.2044000000
........................TAGTTGTCCAAATATAGAATGTCA.........................................................................................................................................................................................................................................................................................................................................................................24200.1022000000
.................................................................................................................................................................................................................................................................TCCATAACTA---------A-----------------------G------AA----AATAG-------------------------------------------TTGTCC-----AA...................................27200.1022000000
................................................................TAATGAAATTTCCAACAAAGTGGCATT..............................................................................................................................................................................................................................................................................................................................27200.1021100000
................................................................................................................................................................................................................................................................................................................................................................................................GCCATACAC---CGTTGAATTCGTA22130.0811000000
...........................................................................................................................................................................................................................................................................................................................TAG-------------------------------------------TTGTCC-----AAAT-ATAGAATGCCA.....................24140.0711000000
...........................................................................................................................................................................................................................................................................................................................TAG-------------------------------------------TTGTCC-----AAAT-ATAGAATGCCATACAC---.............29140.0711000000
......................................................................................................................................................................................................................................................................................................................................................................................AT-ATAGAATGCCATACAC---CGT..........21140.0711000000
.................................................................AATGAAATTTCCAACAAAGTGGC.................................................................................................................................................................................................................................................................................................................................23200.0510100000
.......................................................................ATTTCCAACAAAGTGGCATT..............................................................................................................................................................................................................................................................................................................................20200.0510000010
.................................................................AATGAAATTTCCAACAAAGTGGCAT...............................................................................................................................................................................................................................................................................................................................25200.0511000000
............................................................................................................................................................................................................................................................................................................G------AA----AATAG-------------------------------------------TTGTCC-----AAAT-ATAGAA..........................24200.0510000100
........................TAGTTGTCCAAATATAGAATGTC..........................................................................................................................................................................................................................................................................................................................................................................23200.0510100000
........................................................................................................................................................................................................................................TCCGTACAAAAGTGATTGTTTTTTGTT......................................................................................................................................................27200.0511000000
............................................................TTCGTAATGAAATTTCCAACAAAGTGGCA................................................................................................................................................................................................................................................................................................................................29200.0511000000
....................................................................GAAATTTCCAACAAAGTGGCATT..............................................................................................................................................................................................................................................................................................................................23200.0511000000
........................................................................................................................................................................................................................................TCCGTACAAAAGTGATTGTTT............................................................................................................................................................21200.0511000000
..................................................................................................................................................................................................................................TGAAAATCCGTACAAAAGTGATTGTT.............................................................................................................................................................26200.0511000000
........................................................TGAATTCGTAATGAAATTTCCAACAAAG.....................................................................................................................................................................................................................................................................................................................................28200.0511000000
..........................................................................................TCAAGCCTAGAAATGTAAAATTTTCA.....................................................................................................................................................................................................................................................................................................26200.0511000000
..........................................................................TCCAACAAAGTGGCATTCAAGCCTA......................................................................................................................................................................................................................................................................................................................25200.0511000000
....................................................................GAAATTTCCAACAAAGTGGCATTCAAGC.........................................................................................................................................................................................................................................................................................................................28200.0511000000

Generated: 05/16/2015 at 08:54 PM