ID:

dvi_570

 Coordinate:

scaffold_10322:227620-227880 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-77.0 -76.8 -76.7

Flybase annnotation

CDS [Dvir\GJ16082-cds]; exon [dvir_GLEANR_16503:7]; exon [dvir_GLEANR_16503:6]; CDS [Dvir\GJ16082-cds]; intron [Dvir\GJ16082-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TAAATCAAACCTGAACCGATCCCACAATGAGGAAGCCACCAAGGATAGCGGTAAGTAGGGCACCGAGCTCGGGCAGAGTGGCAACCAGGCATAGTGGCAACCAGTGAGGAGCGAACATCCAGTAGACTGGAGCTTGGAGCTAATCGAACGGGACCATTCGTTTACACAATTCTTGCATCTTCGTCAATTTGTGTTGCACGAAAGCTTCCTGTCCATTACGTGCTCCCACTGTCATGCATGTCCCATCCAATTGATGCTTGTCTCCAGTATTTTGGGTGTTTCCTCTAATCCTTGTCTACTTTTGCTTGCAGATGAGACTGCATCTGTGCGTAGACGACGACGTCGCGAACTGGGCATGGCT
**************************************************.........((.(((....)))))...........((((((.((((((((.....(((((...(((((((((...(((((((...(((((((((.((.(((((...(((((..((((((.....((......))....))))))...)))))....))))))).))))...)))))......((.((((..............)))).)).)))))))...))))))))))))))......))).)))))..))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060663
160_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060655
9x160_testes_total
 SRR060679
140x9_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 V116
male body		 M027
male body		 M028
head
 SRR060664
9_males_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060670
9_testes_total
 SRR060672
9x160_females_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 SRR1106714
embryo_2-4h
 V053
head
 SRR060666
160_males_carcasses_total
 SRR060689
160x9_testes_total
.......................................................................................................................................................................................................................................................................................................................ATGAGACTGCATCTGTGCGT.............................. 20 0 1 2.00 2 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................ATGAGACTGCATCTGTGCGTAGACGA........................ 26 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................CTGTGCGTAGACGACGACGTCGC............... 23 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................GATGAGACTGCATCTGTGCGT.............................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........TGAACCGATCCCACAATGAGGAAGCCA................................................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................ACGACGACGTCGCGAACTGGGCA..... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................AATGAGGAAGCCACCAAGGATAGCGAT..................................................................................................................................................................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................ATCTGTGCGTAGACGACGACGTCGC............... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................CCAATTGATGCTTGTCTCCCGT............................................................................................. 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................CTGTGCGTAGACGACGACGTC................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................GACTGCATCTGTGCGTAGAC.......................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................ACAATGAGGAAGCCACCAAGGATAGCG....................................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................ATCTGTGCGTAGACGACGACGT.................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................ACAATGAGGAAGCCACCAAGGATAG......................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................GATGAGACTGCATCTGTGCGTAGACGA........................ 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......AACCTGAACCGATCCCACAATGAG.......................................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGTAGGGCACCGAGCTCGGGCAGAGTGGC....................................................................................................................................................................................................................................................................................... 32 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................................................................................................................................................GACGACGACGTCGCGAACTGGGCATGGCT 29 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................AGGAAGCCACCAAGGATAGCGATG.................................................................................................................................................................................................................................................................................................................... 24 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................ATGAGACTGCATCTGTGC................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................GATGAGACTGCATCTGTGCGTAGA........................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................AAGCCACCAAGGATAGCGATG.................................................................................................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................ATCTGTGCGTAGACGACGACGTCGCGAAC........... 29 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................ATGAGACTGCATCTGTGCGTAGAC.......................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............ACCGATCCCACAATGAGGA........................................................................................................................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................TCGGGCATAGTGGGAACC................................................................................................................................................................................................................................................................................... 18 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................CGAACCCTCCATGAGGAAGC..................................................................................................................................................................................................................................................................................................................................... 20 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............ACCGATCCCACAATGTTGAAC...................................................................................................................................................................................................................................................................................................................................... 21 3 5 0.40 2 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................TCGGGCCGAATGGGAACCA.................................................................................................................................................................................................................................................................................. 19 3 8 0.13 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................AAGCCACCAAGGATGCTGGT..................................................................................................................................................................................................................................................................................................................... 20 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................TGGCAGAGTGGCTACCCGG................................................................................................................................................................................................................................................................................ 19 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................GATATCGGCAACCAGTGA.............................................................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..................................ATCACCAAGGATAGCGGTG.................................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

ATTTAGTTTGGACTTGGCTAGGGTGTTACTCCTTCGGTGGTTCCTATCGCCATTCATCCCGTGGCTCGAGCCCGTCTCACCGTTGGTCCGTATCACCGTTGGTCACTCCTCGCTTGTAGGTCATCTGACCTCGAACCTCGATTAGCTTGCCCTGGTAAGCAAATGTGTTAAGAACGTAGAAGCAGTTAAACACAACGTGCTTTCGAAGGACAGGTAATGCACGAGGGTGACAGTACGTACAGGGTAGGTTAACTACGAACAGAGGTCATAAAACCCACAAAGGAGATTAGGAACAGATGAAAACGAACGTCTACTCTGACGTAGACACGCATCTGCTGCTGCAGCGCTTGACCCGTACCGA
**************************************************.........((.(((....)))))...........((((((.((((((((.....(((((...(((((((((...(((((((...(((((((((.((.(((((...(((((..((((((.....((......))....))))))...)))))....))))))).))))...)))))......((.((((..............)))).)).)))))))...))))))))))))))......))).)))))..))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M047
female body
 SRR060679
140x9_testes_total
 V047
embryo
 M027
male body		 SRR060665
9_females_carcasses_total
 SRR060689
160x9_testes_total
 SRR060666
160_males_carcasses_total
 SRR060655
9x160_testes_total
 V053
head
 SRR060678
9x140_testes_total
 SRR060658
140_ovaries_total
.....................................................................................................................................................................................................................................................................................................................................CACGCATCTGCTGCTGCAGC................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................TCGGTGGGCCCTATCGCCATG................................................................................................................................................................................................................................................................................................................... 21 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................GTTAACTACGAACAGAGGTCG............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................CCCGTGGCTCGAGCCCGTCT............................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................ACCGCTGGTCACTCCCCACT....................................................................................................................................................................................................................................................... 20 3 3 0.67 2 0 0 0 0 2 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................CTACGGACAGAGGGCTTAAAA........................................................................................ 21 3 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................GAACGTAGAAGAAGTTCAAC.......................................................................................................................................................................... 20 2 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0
...........ACTTGGCGAAGGTGGTACTC.......................................................................................................................................................................................................................................................................................................................................... 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................GAAAGAAATGTGTTAAGAACGT........................................................................................................................................................................................ 22 3 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................AGGGCTTGCGCCGTACCGA 19 3 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................................................................................................................................CGCTTCTGCTGCTTCAGGGC.............. 20 3 12 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................ACCGTTGATCCCTATCCCC........................................................................................................................................................................................................................................................................ 19 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................................................................................................GAGGAGATTAGGAGCAGAA............................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_10322:227570-227930 + dvi_570 TAAATCAAACCTGAACCGATCCCACAATGAGGAAGCCACCAAGGATAGCGGTAAGTAGGGCACC------G--AGC------TCGGGCAGAGTGGC------------------AACCAGGCATAGTGGCAACCAGTGAGG-----------------------------AGCGAACA-----------------------------------------------------------------------------------------------TCCAGT------------AGACTGGAGCTTGGAGCTAATCG----------------AACGGGACCATTCGTTT-----------------------AC----ACAATTCTTGCATCTTCGTCAATTTGTGTTGC---ACGAAAGCTTCCTGTCC--------------------------------------------ATTACGTGCT---------CCCACTGTCATGCATGTCC--CATCCA-AT-TGATGCT---TGT-CTCCAGTATTTTGG---------------------------GTGTTTC---C---------------TCTAATCC-TTGT--CTA--CTTTTGCTTGCAGATGAGACTGCATCTG---TGCGTAGACGACGACGTCGCGAACTGGGCATGGCT
droMoj3 scaffold_6680:2275539-2276063 + CAAATCGAATCTGAATCGTTCATACAACGAGGAAGCCACCAAGGATAGCGGTAAGTGGGCCACC------A--AGC---C--AGAGGCCAACGGGCTGCCAGCAGCAGTGGTGTGGCTAG---------CAGAGG-AGTGAGGCGAGGCCCGCTGTCTCATCCAATTTCGGGCAT---------------------CATC-GTCAGGCTTGATTGCCC--CAGCGGTGATCGTGTAACAGAGGCTGTTGCATTGCTGC-----------AACATTCAGT--------GCCTCGATCGGCGTCTCGTGCTCATCATCATCATGTGGCACGCA----------ACG---------------AGCATTC---AACACGTTCAATACTTGCAACTGCATCACTGTGTATA---TCACGAAAGCTTCCTGCTC-GAATCTGTTATACGTACCAGCTGTTTGCAATATGTTATACTGCTCCCACTGTCCAGT---------------TGCATGTGTTTCT-TGA-TT-G----TTTCTT--------------------------GTTTCATTTCGT------CAATTTC---GTTTAGTTCAATTCATATTCATAT-T-----TCCTTTTTTGCCTTGCAGATGAGAATT---CGTCCATGCGCCGGCGACGACGTCGTGAACTGGGCATGGCT
droGri2 scaffold_15110:279647-280148 - TAAATCGAATCTGAATCGCTCACACAACGAGGAAGCCACCAAGGATAGCGGTAAGTGGACCACA---------ACTAGCAACGAGC---AACTGGCAACTGACAGCCGGAGAGCAA-CAT---------ACAACAATGAGG-----------------------------AGCGCCCAACCAATTTTGGGCATTGGCATCTGTCAAGCTTGGCTGCTC--AAGCAAC-----TGTAAAATTTTGAGCAGCATCGATGC-----------A-CAGTTAGTTTCGCTTCTGGTCGCCAT-----------------CAATCATGTGGCACA-C----------TCGTAT-----------------------ACGGATTCAACACTTGCAACTGCATCAGTTTGTGTTGCAC---GACACCATCATCCTCTACA-AGCGCATCCCAACTAGCTGTATTCAATATGTTAAACTGCAGACTGTACT---------CCCATTGTCATGCATGTCCC-CGTCCA-ATTCTGTTCT---TGT-CTTCCGCCTGTCTG---------------------------ATCTC-------TTA----A------TCTAATCC-TTGTCCCAC--TTCTCATTTGCAGATGAGGTTGCTGCGTCGACGCGAAGACGACGACGTCGCGAGTTGGGCATGGCA
droWil2 scf2_1100000004729:2016107-2016167 + TAAATCAAATTTAAATCGTTCTTTAACTGAGGAAGCCACCAAGGATGGCGGTAAGTGGAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XR_group6:12413562-12413712 + CTCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTATGCACGTGTCC-GCCCAAGT-GTCCTGT---GAAATTTGAGCCCCTTCGATGCCCTTCGA-----------------ACCTGC---C---------------ACTAATCCGC-----TGA--TCTTCTTTTGCAGATGAGGCAGACGCCTCGAATCGCCGCCGACGTCGTCGTGAACTGGGAATGGCA
droPer2 scaffold_33:434661-434811 + CCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTATGCACGTGTCC-GCCCAAGT-GTCCTGT---GAAATTTGAGCCCCTTCGATGCCTTCCGA-----------------ACCTGC---C---------------ACTAATCCGC-----TGA--TCTTCTTTTGCAGATGAGGCAGACGCCTCGAATCGCCGCCGACGTCGTCGTGAACTGGGAATGGCA
droAna3 scaffold_13337:482764-482989 + AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACACTTTCATATTCACCGATTTGTCCTGCGGGGCGAGAGCTTCTCCATT-GTC------------GCAACTTGTGTGAAATACGTTAAAATC---GCT------------------GTGCTATGCATGTGTTCCGTCCA-GT-GGCTTCT---GTTGCTCATATTCCACAAGTGGTCC---------------------------------------ACGTAATACTAATCT---------A--CTTTTTCTTACAGGTGAGGCTGCCACTGTCAGCCGAAGACGCCGCCGTCGAGAACTCGGTCTGTCT
droBip1 scf7180000395155:276482-276618 - TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATGCATGTGTTCTGTCCA-GT-GGCTTCT---GTT------------------------GCTCCCATTC--CTCACGTAGTCCGCCAT---------------ACTAATCT-C-----TA----CCCCTCTTGCAGGTGAAGCTGCCAGTGCCAGCCGAAGACGCCGCCGGCGTGAGCTTGGACTGTCT
droKik1 scf7180000302441:1306071-1306129 - GAAATCGAATCTAAACCGTTCGTTGACCGAGGAAGCCACCAAGGATGGCGGTAAGTTGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454105:771191-771254 + GAAGTCGAATCTGAACCGTTCGTTGACCGAGGAAGCCACCAAGGATGGCGGTAAGTGGGCCTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491249:2974233-2974316 - GAAATCGAATTTGAATCGTTCGTTGACCGAGGAAGCTACCAAGGATGGCGGTAAGTTGGCCACA------CA-ACT------GGATGCAGTGCAGC------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000780275:123840-124342 + GAAATCGAATTTGAATCGTTCGTTGACCGAGGAAGCCACCAAGGATGGCGGTAAGTTGGCAACA---------ACT------GGATGCAGTGCAGC------------------AAACAG---------CAGCCC-AAAGGGGAGATGATCAGCATGGCACCAAATTGGGAGTGA------------------------C-TTCAAGCTTGAATAGCT--ATCCAATGAGGCCGCAA---AGA-T-----------GACAGACCTCACTCTGAATCATT--------CGATCTTCAA-----------------GCGTCATGTGGCTCCTA----------CCGTCTCAGAATCATACAAATTTTAAATACCAATTTCAACACTTTCATTTAAATCATTTTGTGCTGCGTCGTGAAAGCTTTTTCATT-GAA------------AGAACTTGTGTAAAATATGTTAAAATCCAAGCTGTGCCAAGTCCCCATTTAATGTTATGCACGTGTTAAGCCCA-GT-GGCTGCT---TTT-----------------------TGAGTTAATAATTACTATTGATTGGT---T---------------ACTAATTCCC-----TGA--TATTCTCTTGCAGATGAGGTTGCCTCTTCAACCCGCCGTCGCCGACGTCGCGAACTGGGCATGGCC
droBia1 scf7180000302428:9209225-9209311 + GAAATCGAATCTCAATCGTTCGTTGACCGAGGAAGCCACCAAGGATGGCGGTAAGTTGGCATCA---------ACT------GGATGCAGTGCAGC------------------AAGCAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415857:191637-192136 + GAAATCGAATCTGAATCGTTCGTTGACCGAGGAAGCCACCAAGGATGGCGGTAAGTTGGCCGCA------ACAACT------GGATGCAGTGCAGC------------------AAAACG-----------ACTT-AAAAGGAAGATAATCAGCATGGCACCAAATTTGGAACGC------------------------C-TTCAAGCTTCAATAGGCATATCGAATGAGGCTGCAACAGAAA-T-----------GAGAAA--------AGAATCATT--------TGATCTTCAA-----------------TCGCCATGTGGCTGCCA----------TCGTCTCAAAATAATTCCCATTTTAAATACCATTTTCAACACTTGCATTTTCATCACTTTGTGCTTCTCCAAGAAAGCTTTACCATT-GAA------------AAAACTTGTGTAAAATATGTTAAAATCCAAGCTGTGCCAAGTCCTCAATTAATGTTATGCATGTATAATGTCCA-AA-GGCTGAT---GTT------------------------AAATTAATAATATATATAGAATTTT---T---------------ACTAATTTTA-----TAA--TTTTCCCTTACAGATGAGGTTGCCACTTCAACGCGCCGTCGACGACGTCGTGAACTGGGAATGGCT
droEug1 scf7180000409466:174217-174362 + CT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAATGTTATGCACGTGTTATGTCCA-GT-GGCTGCT---TTT-----------------------CGATCTAACACTTTCTAAGAAAAAGT---T---------------ACTAATTC-C-----TGA--TCTTCTCTTGCAGATGAGGTTGCCTCTTCAACTCGCCGACGCCGACGTCGTGAACTGGGAATGGCT
dm3 chr3L:2444038-2444152 + GAAATCGAATTTGAATCGTTCGTTGACCGAGGAAGCCACCAAGGATGGCGGTAAGTTGGCTGGC--AACAGCAAAC------GGATGCAGTGCAGC------------------AA-CAG---------CAAACAGCAAGGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATGATC
droSim2 3l:2341359-2341435 + CTAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-C-----TGA--TCTTCTCTTGCAGATGAGGTTGCATCTTCGACACGCCGACGCCGACGTCGTGAACTGGGAATGGCT
droSec2 scaffold_2:2474932-2475045 + GAAATCGAATTTGAATCGTTCGTTGACCGAGGAAGCCACCAAGGATGGCGGTAAGTTGGCTGGC--AACAGC-AAC------GGATGCAGTGCAGC------------------AA-CAG---------CAAACAGCAAGGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATGATC
droYak3 3L:9489894-9490408 - GAAATCGAATTTGAATCGTTCGTTGACCGAGGAAGCCACCAAGGATGGCGGTAAGTTGGCAACAGCAACGGC-AAC------GGATGCAGTGCAGC------------------AAACAG---------CAGACC-CACGGGGAGATGAACAGCAGGGCACCAAATGCGGAACGC------------------------T-TTCAAGCTTGAATAGGCAT-TCCAATGAGGCCGCAGCAAATAGT-----------GAGATACCTCACTATGATTCATT--------CGATCTTCGA-----------------GCGTCATGTGGCTACCA----------ACGTCTCAGAAAAACACATATTTCAAATACCATTTTCAACATTTTCACCTAAATCATTTTGTGCTGCATCAAGAAAGCTTCTTCACC-GAA------------AGAACATGTGTAAAATATGTTAAAATCCAAGCTGTGCCGAGTCCCTATTTATTGTTATGCACGTGTTATGTCCA-GA-GTCTGCT---TCC-----------------------TTCGCCAATAAGTTGCAATGAGTGGT---T---------------ACTAATCG-C-----TGA--TCTTCTCTTGCAGATGAGGTTGCCTCTTCGACCCGCCGACGCCGTCGTCGTGAGCTGGGAATGGCT
droEre2 scaffold_4784:2459944-2460450 + GAAATCGAATTTGAATCGTTCGTTGACCGAGGAAGCCACCAAGGATGGCGGTAAGTTGGCAACA------GC-AAC------GGATGCAGTGCAGC------------------AAACAG---------CAAACG--AATGGGATGTGATCAGCAGGGCACCAAATGTGGAACGC------------------------C-TTCAAGCTTGAATAGGCAT-TCCAATGAGGCCGCAGCAAAGA-G-----------GAAAGATCTCACTATGATTCATT--------CCATCTCCGG-----------------GCGTCATGTGGCTACCA----------ACGTCGCAGAAAAACACATATTTTAAATACCATTTTCAACATTTTCATTTAAACCATTTTGTGCTGCGTCAAGAAAGCTTCTTCACT-GAA------------AGCACTTGTGTAAAATATGTTAAAGTCCAAGCTGTGCCGAGTCCCTATTTATTGTTATGCACGTGTTATGTCCA-GA-ATATGCT---TCC-----------------------TTTGCTAATAAGTTGCAATGAGTGGT---C---------------ACTAATTT-C-----TGA--TCTTCTCTTGCAGATGAGGTTGCCTCCTCGACCCGTCGACGCCGACGTCGCGAACTGGGAATGGCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TAAATCAAACCTGAACCGATCCCACAATGAGGAAGCCACCAAGGATAGCGGTAAGTAGGGCACC------G--AGC------TCGGGCAGAGTGGC------------------AACCAGGCATAGTGGCAACCAGTGAGG-----------------------------AGCGAACA-----------------------------------------------------------------------------------------------TCCAGT------------AGACTGGAGCTTGGAGCTAATCG----------------AACGGGACCATTCGTTT-----------------------AC----ACAATTCTTGCATCTTCGTCAATTTGTGTTGC---ACGAAAGCTTCCTGTCC--------------------------------------------ATTACGTGCT---------CCCACTGTCATGCATGTCC--CATCCA-AT-TGATGCT---TGT-CTCCAGTATTTTGG---------------------------GTGTTTC---C---------------TCTAATCC-TTGT--CTA--CTTTTGCTTGCAGATGAGACTGCATCTG---TGCGTAGACGACGACGTCGCGAACTGGGCATGGCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGACTGCATCTG---TGCGT..............................2012.002000000000000010000000000000000000000000000000000000000000000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGACTGCATCTG---TGCGTAGACGA........................2612.002000002000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTG---TGCGTAGACGACGACGTCGC...............2312.002001000000000010000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGACTGCATCTG---TGCGT..............................2111.001000000000000000001000000000000000000000000000000000000000000000
...........TGAACCGATCCCACAATGAGGAAGCCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACGACGTCGCGAACTGGGCA.....2311.001010000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTG---TGCGTAGACGACGACGTCGC...............2511.001000000000000010000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTG---TGCGTAGACGACGACGTC.................2111.001000000000000010000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGCATCTG---TGCGTAGAC..........................2011.001000000000000000000000000000000000010000000000000000000000000000
.......................ACAATGAGGAAGCCACCAAGGATAGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTG---TGCGTAGACGACGACGT..................2211.001000000000000000000000000000000001000000000000000000000000000000
.......................ACAATGAGGAAGCCACCAAGGATAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000001000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGACTGCATCTG---TGCGTAGACGA........................2711.001000000000000000000000010000000000000000000000000000000000000000
.......AACCTGAACCGATCCCACAATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000001000000000000000000000000000
..................................................GTAAGTAGGGCACC------G--AGC------TCGGGCAGAGTGGC------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3211.001000000000000000000000000000000000000000000100000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGACGACGTCGCGAACTGGGCATGGCT2911.001100000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGACTGCATCTG---TGC................................1811.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGACTGCATCTG---TGCGTAGA...........................2411.001000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTG---TGCGTAGACGACGACGTCGCGAAC...........2911.001000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGACTGCATCTG---TGCGTAGAC..........................2411.001001000000000000000000000000000000000000000000000000000000000000
..............ACCGATCCCACAATGAGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000100000000000000000000000000
droMoj3
CAAATCGAATCTGAATCGTTCATACAACGAGGAAGCCACCAAGGATAGCGGTAAGTGGGCCACC------A--AGC---C--AGAGGCCAACGGGCTGCCAGCAGCAGTGGTGTGGCTAG---------CAGAGG-AGTGAGGCGAGGCCCGCTGTCTCATCCAATTTCGGGCAT---------------------CATC-GTCAGGCTTGATTGCCC--CAGCGGTGATCGTGTAACAGAGGCTGTTGCATTGCTGC-----------AACATTCAGT--------GCCTCGATCGGCGTCTCGTGCTCATCATCATCATGTGGCACGCA----------ACG---------------AGCATTC---AACACGTTCAATACTTGCAACTGCATCACTGTGTATA---TCACGAAAGCTTCCTGCTC-GAATCTGTTATACGTACCAGCTGTTTGCAATATGTTATACTGCTCCCACTGTCCAGT---------------TGCATGTGTTTCT-TGA-TT-G----TTTCTT--------------------------GTTTCATTTCGT------CAATTTC---GTTTAGTTCAATTCATATTCATAT-T-----TCCTTTTTTGCCTTGCAGATGAGAATT---CGTCCATGCGCCGGCGACGACGTCGTGAACTGGGCATGGCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................TCATACAACGAGGAAGCCACCAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGACGTCGTGAACTGGGCAT....2211.001000001
..................................................................................................................GGCTAG---------CAGAGG-AGTGAGGCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCCATGCGCCGGCGACGAC....................2111.001100000
................CGTTCATACAACGAGGAAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...................................................................................................................................GAGG-AGTGAGGCGAGGCCCGCTGTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
.....................ATACAACGAGGAAGCCACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100
................CGTTCATACAACGAGGAAGCCACCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.................GTTCATACAACGAGGAAGCCACCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
..................................................GTAAGTGGGCCACC------A--AGC---C--AGAGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
droGri2
TAAATCGAATCTGAATCGCTCACACAACGAGGAAGCCACCAAGGATAGCGGTAAGTGGACCACA---------ACTAGCAACGAGC---AACTGGCAACTGACAGCCGGAGAGCAA-CAT---------ACAACAATGAGG-----------------------------AGCGCCCAACCAATTTTGGGCATTGGCATCTGTCAAGCTTGGCTGCTC--AAGCAAC-----TGTAAAATTTTGAGCAGCATCGATGC-----------A-CAGTTAGTTTCGCTTCTGGTCGCCAT-----------------CAATCATGTGGCACA-C----------TCGTAT-----------------------ACGGATTCAACACTTGCAACTGCATCAGTTTGTGTTGCAC---GACACCATCATCCTCTACA-AGCGCATCCCAACTAGCTGTATTCAATATGTTAAACTGCAGACTGTACT---------CCCATTGTCATGCATGTCCC-CGTCCA-ATTCTGTTCT---TGT-CTTCCGCCTGTCTG---------------------------ATCTC-------TTA----A------TCTAATCC-TTGTCCCAC--TTCTCATTTGCAGATGAGGTTGCTGCGTCGACGCGAAGACGACGACGTCGCGAGTTGGGCATGGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TAAATCAAATTTAAATCGTTCTTTAACTGAGGAAGCCACCAAGGATGGCGGTAAGTGGAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........TAAATCGTTCTTTAACTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
........................................AAGGATGGCGGTAAGTGGAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2111.00101000
dp5
CTCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTATGCACGTGTCC-GCCCAAGT-GTCCTGT---GAAATTTGAGCCCCTTCGATGCCCTTCGA-----------------ACCTGC---C---------------ACTAATCCGC-----TGA--TCTTCTTTTGCAGATGAGGCAGACGCCTCGAATCGCCGCCGACGTCGTCGTGAACTGGGAATGGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGACGTCGTCGTGAACTGGG.......2311.0010000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCCGACGTCGTCGTGAACT..........2211.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGGCAGACGCCTCGAATC................................2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---C---------------ACTAATCCGC-----TGA--TCTTCTTTTGCAG.....................................................2811.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGCCGACGTCGTCGTGAACTGG........2511.0010000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGACGTCGTCGTGAACTGGGA......2411.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATCGCCGCCGACGTCGTCGT...............2311.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGACGCCTCGAATCGCC.............................1911.0010100000000
droPer2
CCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTATGCACGTGTCC-GCCCAAGT-GTCCTGT---GAAATTTGAGCCCCTTCGATGCCTTCCGA-----------------ACCTGC---C---------------ACTAATCCGC-----TGA--TCTTCTTTTGCAGATGAGGCAGACGCCTCGAATCGCCGCCGACGTCGTCGTGAACTGGGAATGGCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAATCGCCGCCGACGTCGTCGTGA.............2612.002200000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCCGCCGACGTCGTCGT...............2011.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCCGCCGACGTCGTCGTGAAC...........2411.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCCGACGTCGTCGTGAACTGGGA......2611.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTCGTCGTGAACTGGGAATGG..2411.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCGAATCGCCGCCGACGTCGTCG................2511.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCCGCCGACGTCGTCGTGAA............2311.001000001
droAna3
AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACACTTTCATATTCACCGATTTGTCCTGCGGGGCGAGAGCTTCTCCATT-GTC------------GCAACTTGTGTGAAATACGTTAAAATC---GCT------------------GTGCTATGCATGTGTTCCGTCCA-GT-GGCTTCT---GTTGCTCATATTCCACAAGTGGTCC---------------------------------------ACGTAATACTAATCT---------A--CTTTTTCTTACAGGTGAGGCTGCCACTGTCAGCCGAAGACGCCGCCGTCGAGAACTCGGTCTGTCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCACTGTCAGCCGAAGACGCCGCC....................2612.002110000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCCGCCGTCGAGAACTCGGTC.....2411.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCCGTCGAGAACTCGGTCTGTCT2611.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAATC---GCT------------------GTGCTATGCATGT.....................................................................................................................................................................................2511.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGCTGCCACTGTCA...................................1811.001000001
droBip1
TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATGCATGTGTTCTGTCCA-GT-GGCTTCT---GTT------------------------GCTCCCATTC--CTCACGTAGTCCGCCAT---------------ACTAATCT-C-----TA----CCCCTCTTGCAGGTGAAGCTGCCAGTGCCAGCCGAAGACGCCGCCGGCGTGAGCTTGGACTGTCTSizeHit CountTotal NormTotal
No Reads
droKik1
GAAATCGAATCTAAACCGTTCGTTGACCGAGGAAGCCACCAAGGATGGCGGTAAGTTGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GAAGTCGAATCTGAACCGTTCGTTGACCGAGGAAGCCACCAAGGATGGCGGTAAGTGGGCCTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GAAATCGAATTTGAATCGTTCGTTGACCGAGGAAGCTACCAAGGATGGCGGTAAGTTGGCCACA------CA-ACT------GGATGCAGTGCAGC------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GAAATCGAATTTGAATCGTTCGTTGACCGAGGAAGCCACCAAGGATGGCGGTAAGTTGGCAACA---------ACT------GGATGCAGTGCAGC------------------AAACAG---------CAGCCC-AAAGGGGAGATGATCAGCATGGCACCAAATTGGGAGTGA------------------------C-TTCAAGCTTGAATAGCT--ATCCAATGAGGCCGCAA---AGA-T-----------GACAGACCTCACTCTGAATCATT--------CGATCTTCAA-----------------GCGTCATGTGGCTCCTA----------CCGTCTCAGAATCATACAAATTTTAAATACCAATTTCAACACTTTCATTTAAATCATTTTGTGCTGCGTCGTGAAAGCTTTTTCATT-GAA------------AGAACTTGTGTAAAATATGTTAAAATCCAAGCTGTGCCAAGTCCCCATTTAATGTTATGCACGTGTTAAGCCCA-GT-GGCTGCT---TTT-----------------------TGAGTTAATAATTACTATTGATTGGT---T---------------ACTAATTCCC-----TGA--TATTCTCTTGCAGATGAGGTTGCCTCTTCAACCCGCCGTCGCCGACGTCGCGAACTGGGCATGGCCSizeHit CountTotal NormTotal
No Reads
droBia1
GAAATCGAATCTCAATCGTTCGTTGACCGAGGAAGCCACCAAGGATGGCGGTAAGTTGGCATCA---------ACT------GGATGCAGTGCAGC------------------AAGCAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GAAATCGAATCTGAATCGTTCGTTGACCGAGGAAGCCACCAAGGATGGCGGTAAGTTGGCCGCA------ACAACT------GGATGCAGTGCAGC------------------AAAACG-----------ACTT-AAAAGGAAGATAATCAGCATGGCACCAAATTTGGAACGC------------------------C-TTCAAGCTTCAATAGGCATATCGAATGAGGCTGCAACAGAAA-T-----------GAGAAA--------AGAATCATT--------TGATCTTCAA-----------------TCGCCATGTGGCTGCCA----------TCGTCTCAAAATAATTCCCATTTTAAATACCATTTTCAACACTTGCATTTTCATCACTTTGTGCTTCTCCAAGAAAGCTTTACCATT-GAA------------AAAACTTGTGTAAAATATGTTAAAATCCAAGCTGTGCCAAGTCCTCAATTAATGTTATGCATGTATAATGTCCA-AA-GGCTGAT---GTT------------------------AAATTAATAATATATATAGAATTTT---T---------------ACTAATTTTA-----TAA--TTTTCCCTTACAGATGAGGTTGCCACTTCAACGCGCCGTCGACGACGTCGTGAACTGGGAATGGCTSizeHit CountTotal NormTotal
No Reads
droEug1
CT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAATGTTATGCACGTGTTATGTCCA-GT-GGCTGCT---TTT-----------------------CGATCTAACACTTTCTAAGAAAAAGT---T---------------ACTAATTC-C-----TGA--TCTTCTCTTGCAGATGAGGTTGCCTCTTCAACTCGCCGACGCCGACGTCGTGAACTGGGAATGGCTSizeHit CountTotal NormTotal
No Reads
dm3
GAAATCGAATTTGAATCGTTCGTTGACCGAGGAAGCCACCAAGGATGGCGGTAAGTTGGCTGGC--AACAGCAAAC------GGATGCAGTGCAGC------------------AA-CAG---------CAAACAGCAAGGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATGATCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................TTCGTTGACCGAGGAAGCCACCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
......................TTGACCGAGGAAGCCACCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................TTCGTTGACCGAGGAAGCCACCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...................................CCACCAAGGATGGCGGTAAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......AATTTGAATCGTTCGTTGACCGAGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.....................GTTGACCGAGGAAGCCACCAAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ATCGTTCGTTGACCGAGGAAGCCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................GTTCGTTGACCGAGGAAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...........................CGAGGAAGCCACCAAGGATGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.................GTTCGTTGACCGAGGAAGCCACCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TGAATCGTTCGTTGACCGAGGAAGCCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CGAGGAAGCCACCAAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
........ATTTGAATCGTTCGTTGACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.....CGAATTTGAATCGTTCGTTGACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AATCGAATTTGAATCGTTCGTTGACCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........ATTTGAATCGTTCGTTGACCGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......AATTTGAATCGTTCGTTGACCGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GTTGACCGAGGAAGCCACCAAGGATGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................GGTAAGTTGGCTGGC--AACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GTTGACCGAGGAAGCCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........TTTGAATCGTTCGTTGACCGAGGAAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AATCGTTCGTTGACCGAGGAAGCCACCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TTCGTTGACCGAGGAAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
...................TCGTTGACCGAGGAAGCCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CGTTGACCGAGGAAGCCACCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CTAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-C-----TGA--TCTTCTCTTGCAGATGAGGTTGCATCTTCGACACGCCGACGCCGACGTCGTGAACTGGGAATGGCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-C-----TGA--TCTTCTCTTGCAG.....................................................2011.00110000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGACGCCGACGTCGTGAACTGGGA......2611.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTGAACTGGGAATG...1711.00100000000100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGTCGTGAACTGGGAATGGCT2411.00101000000000000000
droSec2
GAAATCGAATTTGAATCGTTCGTTGACCGAGGAAGCCACCAAGGATGGCGGTAAGTTGGCTGGC--AACAGC-AAC------GGATGCAGTGCAGC------------------AA-CAG---------CAAACAGCAAGGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATGATCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................CGTTGACCGAGGAAGCCACCAAGGATGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010010
........ATTTGAATCGTTCGTTGACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
droYak3
GAAATCGAATTTGAATCGTTCGTTGACCGAGGAAGCCACCAAGGATGGCGGTAAGTTGGCAACAGCAACGGC-AAC------GGATGCAGTGCAGC------------------AAACAG---------CAGACC-CACGGGGAGATGAACAGCAGGGCACCAAATGCGGAACGC------------------------T-TTCAAGCTTGAATAGGCAT-TCCAATGAGGCCGCAGCAAATAGT-----------GAGATACCTCACTATGATTCATT--------CGATCTTCGA-----------------GCGTCATGTGGCTACCA----------ACGTCTCAGAAAAACACATATTTCAAATACCATTTTCAACATTTTCACCTAAATCATTTTGTGCTGCATCAAGAAAGCTTCTTCACC-GAA------------AGAACATGTGTAAAATATGTTAAAATCCAAGCTGTGCCGAGTCCCTATTTATTGTTATGCACGTGTTATGTCCA-GA-GTCTGCT---TCC-----------------------TTCGCCAATAAGTTGCAATGAGTGGT---T---------------ACTAATCG-C-----TGA--TCTTCTCTTGCAGATGAGGTTGCCTCTTCGACCCGCCGACGCCGTCGTCGTGAGCTGGGAATGGCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................TTCGTTGACCGAGGAAGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
......................................................................................................................................................CAGCAGGGCACCAAATGCGGAACGC------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTCTTCGACCCGCCGACGCCGTC....................2611.00101000000000
...........................................................................C------GGATGCAGTGCAGC------------------AAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------ACTAATCG-C-----TGA--TCTTCTCTTGCAG.....................................................2611.00100010000000
.....................GTTGACCGAGGAAGCCACCAAGGATGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
droEre2
GAAATCGAATTTGAATCGTTCGTTGACCGAGGAAGCCACCAAGGATGGCGGTAAGTTGGCAACA------GC-AAC------GGATGCAGTGCAGC------------------AAACAG---------CAAACG--AATGGGATGTGATCAGCAGGGCACCAAATGTGGAACGC------------------------C-TTCAAGCTTGAATAGGCAT-TCCAATGAGGCCGCAGCAAAGA-G-----------GAAAGATCTCACTATGATTCATT--------CCATCTCCGG-----------------GCGTCATGTGGCTACCA----------ACGTCGCAGAAAAACACATATTTTAAATACCATTTTCAACATTTTCATTTAAACCATTTTGTGCTGCGTCAAGAAAGCTTCTTCACT-GAA------------AGCACTTGTGTAAAATATGTTAAAGTCCAAGCTGTGCCGAGTCCCTATTTATTGTTATGCACGTGTTATGTCCA-GA-ATATGCT---TCC-----------------------TTTGCTAATAAGTTGCAATGAGTGGT---C---------------ACTAATTT-C-----TGA--TCTTCTCTTGCAGATGAGGTTGCCTCCTCGACCCGTCGACGCCGACGTCGCGAACTGGGAATGGCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTCGACGCCGACGTCGCGAACTGGGA......2811.0010000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGACGTCGCGAACTGGGAATG...2211.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATGAGGTTGCCTCCTCG....................................2011.0010000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCGTCGACGCCGACGTCG................2111.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAAGCTTCTTCACT-GAA------------.....................................................................................................................................................................................................................................................2011.0011000000

Generated: 05/19/2015 at 10:44 AM