ID:

dvi_569

 Coordinate:

scaffold_10322:82563-82713 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.8 -25.6 -25.5

Flybase annnotation

CDS [Dvir\GJ16071-cds]; exon [dvir_GLEANR_16494:3]; intron [Dvir\GJ16071-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATATCATTTTATTCTATCCTATTTCTGTTTCTGTTCGACGTTTTTGGTAATTTTGACTAATCTCTATTTGAAGATTTGAGTTGAGTACAAGAAAAGCAACTCAAAACGTTTCTTGTTGTTCTAACCCGGCATTTAAGCCTTATTCAAAGCAAGATTTTTGTCCAGCTCGAAGGTATTTAAGTATTTTCCCTTTGTGTACAGGAACACCGCACGGAGATCGATGCACGCGCCGGCACCTTTGGGGCCTTTGA
**************************************************..............((((((((..(((((((((...(((((((.................(((((((..........(((......)))........)))))))))))))).)))))))))....))))))))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M061
embryo
 M027
male body		 SRR060670
9_testes_total
 SRR060667
160_females_carcasses_total
 SRR060654
160x9_ovaries_total
 SRR060657
140_testes_total
 SRR060671
9x160_males_carcasses_total
 SRR060688
160_ovaries_total
 V047
embryo
 V116
male body		 SRR060661
160x9_0-2h_embryos_total
 SRR060656
9x160_ovaries_total
 SRR060663
160_0-2h_embryos_total
 SRR060676
9xArg_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060689
160x9_testes_total
 GSM1528803
follicle cells		 SRR060666
160_males_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060672
9x160_females_carcasses_total
 SRR060664
9_males_carcasses_total
 V053
head
 SRR1106729
mixed whole adult body
 SRR060662
9x160_0-2h_embryos_total
 SRR060668
160x9_males_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 M028
head
...............................................................................................................................................................................................................CGCACGGAGATCGATGCA.......................... 18 0 1 2.00 2 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................GGCAACTTTGGGGCCGTT.. 18 2 12 1.58 19 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CTGAGATCGATGCACGCGCCG................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GCACGGAGATCGATGCACGC....................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GAACACCGCACGGAGATCG............................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GAACACCGCACGGAGATCGAT............................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CACCGCACGGAGATCGATGCAC......................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................GTCATCAGGAACACCGCACGGAGATC................................ 26 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................TCTCTTCGACGTTTTTGGT........................................................................................................................................................................................................... 19 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CACCGCACGGAGATCGATGC........................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GCACGCGCCGGCACCTTTGGG........ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................ACGGAGATCGATGCACGCGCC.................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................GAAAAGCAACTCAAAACGT.............................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ACCGGAACCCCGCAAGGAGAT................................. 21 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................AGAGGGCACCTTTGGGGCC..... 19 3 16 0.69 11 2 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.............................................................................................AAGCACCTAAAAGCGTTTCTTG........................................................................................................................................ 22 3 3 0.67 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................TAATCTCAATTTGAAAATTTGAG........................................................................................................................................................................... 23 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................GATTTTTGACCAAGTCGAAGGT............................................................................. 22 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GAGAGGGCACCTTTGGGGCC..... 20 3 5 0.40 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0
.........................................................TAATCTCAATTTGTACATTTGAGT.......................................................................................................................................................................... 24 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................AACCCGGAAGTTAAGCCTT.............................................................................................................. 19 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................TAATCTCCATTTGAAAATTTGAT........................................................................................................................................................................... 23 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GACGGCAACTTTGGGGCC..... 18 2 11 0.27 3 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................TAATTTCAATTTGAAGATGTGAG........................................................................................................................................................................... 23 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................GCACCTTTGGGGCCGTTC. 18 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CCGGAACCCCGCAAGGAGAT................................. 20 3 12 0.25 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0
.....................................................................................................................................................................................................ACCGGAACCCCGCAAGGAG................................... 19 3 9 0.22 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................GAGCGGGCAACTTTGGGGCC..... 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GGCCTTTAAGCCTTACCC.......................................................................................................... 18 3 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TGTCCAGGTTGAAGGT............................................................................. 16 2 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0
........................................................................................................................................................................................................GGAACCCCGCAAGGAGAT................................. 18 2 14 0.14 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................GGCAACTTTGGGGCCTTTCC 20 3 16 0.13 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TAAGTATTTTCGCTTTATG....................................................... 19 2 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GCGGGCAACTTTGGGGCCGT... 20 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................GCAACTTTGGGGCCTTTC. 18 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................................................................GCACCTTTGGGGCCGTTCC 19 3 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GAGGGCACCTTTGGGGCCG.... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GGGCAACTTTGGGGCCGTT.. 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TATAGTAAAATAAGATAGGATAAAGACAAAGACAAGCTGCAAAAACCATTAAAACTGATTAGAGATAAACTTCTAAACTCAACTCATGTTCTTTTCGTTGAGTTTTGCAAAGAACAACAAGATTGGGCCGTAAATTCGGAATAAGTTTCGTTCTAAAAACAGGTCGAGCTTCCATAAATTCATAAAAGGGAAACACATGTCCTTGTGGCGTGCCTCTAGCTACGTGCGCGGCCGTGGAAACCCCGGAAACT
**************************************************..............((((((((..(((((((((...(((((((.................(((((((..........(((......)))........)))))))))))))).)))))))))....))))))))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060666
160_males_carcasses_total
 SRR060659
Argentina_testes_total
 V116
male body		 V053
head
 M027
male body		 M047
female body
 SRR060663
160_0-2h_embryos_total
.........................................................................................................................................GGTCTAAGTTTCGTACTAAAAAC........................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0
........................GAAAGAGACAAGCTGCAAA................................................................................................................................................................................................................ 19 2 2 0.50 1 0 0 1 0 0 0 0
.......................AGAAAGAGACAAGCTGCAAA................................................................................................................................................................................................................ 20 2 2 0.50 1 0 1 0 0 0 0 0
..........................................................................................................................TTGGGTCGTAAAATCGGAAG............................................................................................................. 20 3 4 0.25 1 0 0 0 1 0 0 0
.............................................................................................................AAGAGCTACAAGACTGGGC........................................................................................................................... 19 3 9 0.22 2 0 0 0 0 2 0 0
...................................................................................................................................................................................TCATAAAAGCGAAATACAT..................................................... 19 2 6 0.17 1 0 0 0 0 0 1 0
............................................................................................................................GGGCCTTAGATTGGGAATA............................................................................................................ 19 3 15 0.07 1 0 0 0 0 0 0 1
...........................................................................................................CGACGACCAACAAGATTGG............................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_10322:82513-82763 + dvi_569 ATATCA------TTTTATTC---TATCCTA-------TTTCTGTTTCTGTTCGAC----------GTT---T---TTGGTAATTTTGACTAATCTCTATT-------------TGAAGATTTGAGTTG-------AGTACAA------------GA---A--------AAGC----------------AACTCA-AAACG---TTTCTTGTTGTT--CTAACCC------GGCATTTAA---GCCTTATT--------------------------------CAAAGC-AAGATTTTTGTCCAGC---T----CG----AA--GGTATTTAAGT-------A-TTTT--CCCTTTG----T-GT---ACAGGAACACCGCACGGAGATCGATGCACGCGCCGGCACCTTTGGGGCCTTTGA
droMoj3 scaffold_6680:2139994-2140237 + ATATCA---------------TTTGTCAAC-------TTTATGTTTCTGTTCGCC----------GTA---T---TTGG-TTTTTTGACTAATCTGTATT-------------AGA-------AGCTGCAAC--GAATACAA-------------C--AA----A-------------------CAGCCAATTAAAATAA---TTTCTTGTTGTT--CTAACCC------GGCGTTTAT---AC--------------------------------------CTTACC-AAAATCTAAGATTCAACTAAAGCTTT----AAGACTAAT----GCATT----T-TAAT--T--ATTA----A-AT---ATAGGAACATCGCACGGAGATTGATGCCCGTGCTGGAACTTTCGGAGCCTTCGA
droGri2 scaffold_15110:416305-416622 - ATATCATCTTCGA---CTTC-------------TCTA--------------------TAATTTACGTTCTGTTCGTGG--TTTGTTGACTAATCCA--ATAAAAAATAAAAACAAAAAACTGAAGCTGCAGC--AAA-----------------GC---AAAATACAACAGCAAAAAT--------GGCAACTAAAACTTTAACTTGTTGTTGTG-TCTAACCC------GGCGTTTAAAACACCTTTTAAAAACACACACACACAACAGCGGCTAATAATTC-----------ATTTAACCATA---T----CAAGAGGAGACTAAT----TCAATTTCTCATTATATATATATGTATAT-AT---ATAGGAACACCGAACGGAGATCGATGCACGCGCTGGAACCTTTGGGGCCTTCGA
droWil2 scf2_1100000004540:1240420-1240555 + T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGTT--CTAACCTTT----GGCAATTGT---TT-----C---------------------AA---------TTTATT-TAAATCAGTAATTCTA---A--------------C-AAT----TT-------GAATTTCCTTTTTCGAATTT-TC---TTAGGAACATCGCACTGAAATCGATGCTAGAGCCGGCACTTTTGGTGCCTTCGA
dp5 XR_group8:524993-525253 - CA-TCG------A---ATTCTTTCCTTAACCCTATTT--------------------CGTTCCACGTT-TGTTTGTTG--GTTTTTGACTAAT------T-------------TGAAGCTTGAAGCTGCAGC--AAATAAAT-----AAACCAAGCCCAG----G-------------------CAGCCAGCCACAGTTG---CATATTGTTGTT--CTAACCCCCACCAGGCGTTGAT---ATCTTTTT---------------------GG------------------GAATTATA---------GAATTTA----GGAACTAAT----CG-------T-TTGC--TATTCGGAATAC-CC---TTAGGAACACCGAACGGAGATTGATGCTCGCGCTGGAACCTTTGGGGCCTTCGA
droPer2 scaffold_32:956619-956873 + ATTC----------------TTTCCTTAACCCTATTT--------------------CGTTCCACGTT-TGTTTGTTG--GTTTTTGACTAAT------T-------------TGAAGCTTGAAGCTGCAGC--AAATAAAT-----AAACCCAGCCCAG----G-------------------CAGCCAGCCACAGTTG---CATATTGTTGTT--CTAACCCCCACCAGGCGTTGAT---ATCTTTTT---------------------GG------------------GAATTATA---------GAATTTA----GGAACTAAT----CG-------T-TTGC--TATTCGGAATAC-CC---TTAGGAACACCGAACGGAGATCGATGCTCGCGCTGGAACCTTTGGGGCCTTCGA
droAna3 scaffold_13337:1053597-1053844 + ATCTCG------C---AGTGTTTTATCCAC-------CCAATAGTTCAGTTTAAC---GTTCCACGTTCT----------GTTTTTGACTAAT------G-------------CCA-------AGCTGCAGC--AAC-----TGATCC-T--CGAA---GG---CCAGCAGCCACTCGGGCAATCAGCCAGCCAC--------C--CATATTGTG--CTAACCC------GGCGCT------ATATTC-C---------------------AAC--------CCA-TC-AAA------GAA----------------------CAAGT----CA-------A-TTAA--TAACTTCATTTT-TC---TCAGGAACACCGCACGGAGATCGATGCTCGCGCCGGAACCTTCGGAGCCTTCGA
droBip1 scf7180000396371:1384471-1384590 + ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGTG--CTAACCC------GGCGTT------ATATTC-C---------------------ATC--------CCA-TC-AAA------GACC--A---A--------------CTAAT----------------TAA--CACCTATATTTT-CC---TCAGGAACACCGCACCGAGATCGATGCTCGCGCCGGTACCTTCGGAGCCTTCGA
droKik1 scf7180000302577:271841-272054 - TT--------------------------------------------TAGTTTAAC----------------TTCGTTGTTACTTTTGACTAAT------T-------------TGA-------AGCTGCAGCGCAAT-----CGTTCC-T--CAGC---GG---C-----------------------CAA---GCATTG---C--CATGTTGTT--CTAACCC------GGCGTTGTT---AC--------------------------------------CATTCCCAAAGTCCACAA---------TGTTTC----AAAACTAAT----CCT------C-GTCT--CAATTCGAATCT-CCCCTTTAGGAACATCGCACCGAGATCGATGCCCGTGCCGGCACCTTCGGAGCCTTCGA
droFic1 scf7180000454113:289406-289530 + ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGTT--CTAACCC------GGCGTT------CC--------------------------------------CAATCC-CAAATCCACAACCCAA---A--------------CTAAT----TC-------G-CTTA--CTCCCCGAATTT-TC---CCAGGAACACCGCACGGAGATCGATGCCCGCGCCGGAACCTTTGGCGCCTTCGA
droEle1 scf7180000491249:3763976-3764186 + TT-------------------------------------------------------CGTTCTACGTT-T-------GTTACTTTTGACTAAT------A-------------CGA-------CGCTGCAGC--ATT-----TGATTA-T--CAGC---GG---C-------------------CAGCCAGCCAGCGTAG---C--AATGTTGTTCTCTAACCC------GGCGTTATT---AC--------------------------------------CAATCC-AAGAACTATGACCCAA---A--------------CTAAT----CC-------G-ATTTTACCCCAAAATTTC-CC---CCAGGAACATCGCACGGAGATCGATGCTCGCGCTGGAACCTTCGGCGCCTTCGA
droRho1 scf7180000776850:145041-145165 + ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGTT--CTAACCC------GGCGTT------TC--------------------------------------CAATCC-AAGAACCATGACCCAA---A--------------CTAAT----CC-------G-ATGT--TTCCACGAATTT-TC---ACAGGAACACCGCACGGAGATCGATGCTCGCGCTGGAACCTTCGGCGCCTTCGA
droBia1 scf7180000302428:8479757-8479882 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGTT--CTAACCC------GGCGTT------AC--------------------------------------CAATCCCAAACTGTATAGCCAAA---A--------------CTAAT----CC-------G-ATTT--CTCCATGAATTC-CC---GCAGGAACATCGCACGGAGATCGATGCCCGCGCCGGAACCTTCGGCGCCTTCGA
droTak1 scf7180000415229:367525-367748 + TT--------------------------------------------CAGTTTAACTTC-------GTTCTTTTC---GTTACTTTTGACTAAT------T-------------CGA-------CGCTGCAGC--AATCGATCTGATCC-T--CAGC---GG---CC-----C------------CAGCCAGCCAGCGTTG---C--AATGTTGTT--CTAACAC------GGCGTT------ACCTTATC---------------------GA---------TTTCTC-TAAATCCAT-----AA---A--------------CTAAT----CT-------A-TTTT--CACCCTGAATTTCCC---ACAGGAACATCGCACGGAGATCGATGCCCGCGCCGGAACCTTCGGTGCCTTTGA
droEug1 scf7180000407756:106225-106348 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGTT--CTAACAC------GGCGTT------AC--------------------------------------CAATGC-AAAATCAACGACTTAA---A--------------CTAAT----CT---------ATTT--CACCATGAATTT-CC---TTAGGAACACCGCACAGAGATCGATGCCCGCGCTGGAACTTTCGGCGCCTTCGA
dm3 chr3L:1783633-1783757 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGTT--CTAACAC------GGCGTT------AC--------------------------------------CAAAGC-AAAAACCATGACCCAA---A--------------CTAAT----AT-------G-ATTT--CCCCATGAATTT-CC---CCAGGAACACCGAACGGAGATCGATGCGCGCGCCGGAACTTTCGGGGCTTTCGA
droSim2 3l:1693593-1693717 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGTT--CTAACAC------GGCGTT------AC--------------------------------------CAAAGC-AAAATCCATGACCCAA---A--------------CTAAT----CT-------G-ATTT--CCCCATGAATTT-CC---CCAGGAACACCGCACGGAGATCGATGCGCGCGCCGGAACTTTCGGCGCCTTCGA
droSec2 scaffold_2:1809832-1809956 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGTT--CTAACAC------GGCGTT------AC--------------------------------------CAAAGC-AAAATCCATGACCCAA---A--------------CTAAT----CT-------G-ATTT--CCCCATGAATTT-CC---CCAGGAACACCGCACGGAGATCGATGCGCGCGCCGGAACTTTCGGCGCCTTCGA
droYak3 3L:1736032-1736156 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGTT--CTAACAC------GGCGTT------AC--------------------------------------CAAAGC-GAAGTCCATGACCCTA---A--------------CTAAT----CT-------G-ATTT--CCCCATGAATTT-CC---CCAGGAACACCGCACGGAGATCGATGCCCGCGCTGGAACTTTCGGCGCCTTCGA
droEre2 scaffold_4784:1768334-1768457 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGTT--CTAACAC------GGCGTT------AC--------------------------------------CAA-GC-AAAGTCCATGACCCTA---A--------------CTAAT----CT-------G-ATTT--CCCCATGAATTT-CC---ACAGGAACACCGCACGGAGATCGATGCCCGCGCCGGCACTTTCGGCGCCTTCGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ATATCA------TTTTATTC---TATCCTA-------TTTCTGTTTCTGTTCGAC----------GTT---T---TTGGTAATTTTGACTAATCTCTATT-------------TGAAGATTTGAGTTG-------AGTACAA------------GA---A--------AAGC----------------AACTCA-AAACG---TTTCTTGTTGTT--CTAACCC------GGCATTTAA---GCCTTATT--------------------------------CAAAGC-AAGATTTTTGTCCAGC---T----CG----AA--GGTATTTAAGT-------A-TTTT--CCCTTTG----T-GT---ACAGGAACACCGCACGGAGATCGATGCACGCGCCGGCACCTTTGGGGCCTTTGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................CGCACGGAGATCGATGCA..........................1812.002000000010000000000000000000000000000001000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................GCACGGAGATCGATGCACGC.......................2011.001000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................GAACACCGCACGGAGATCG...............................1911.001000010000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................GAACACCGCACGGAGATCGAT.............................2111.001000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................................................................................................................CACCGCACGGAGATCGATGCAC.........................2211.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................CACCGCACGGAGATCGATGC...........................2011.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................GCACGCGCCGGCACCTTTGGG........2111.001000100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................ACGGAGATCGATGCACGCGCC....................2111.001100000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................GA---A--------AAGC----------------AACTCA-AAACG---T.........................................................................................................................................................................................................................1911.001000000000000000000000100000000000000000000000000000000000000000
droMoj3
ATATCA---------------TTTGTCAAC-------TTTATGTTTCTGTTCGCC----------GTA---T---TTGG-TTTTTTGACTAATCTGTATT-------------AGA-------AGCTGCAAC--GAATACAA-------------C--AA----A-------------------CAGCCAATTAAAATAA---TTTCTTGTTGTT--CTAACCC------GGCGTTTAT---AC--------------------------------------CTTACC-AAAATCTAAGATTCAACTAAAGCTTT----AAGACTAAT----GCATT----T-TAAT--T--ATTA----A-AT---ATAGGAACATCGCACGGAGATTGATGCCCGTGCTGGAACTTTCGGAGCCTTCGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................AGATTGATGCCCGTGCTGGAACTTT............2511.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................GATTGATGCCCGTGCTGGA.................1911.001100000
..........................................GTTTCTGTTCGCC----------GTA---T---TTGG-.....................................................................................................................................................................................................................................................................................................................................................2111.001000010
.......................................................................................................................................................................................................................................GCGTTTAT---AC--------------------------------------CTTACC-AAAATCTA............................................................................................................................2411.001000010
.................................................................................................................................................................................................................................................................................................................................GACTAAT----GCATT----T-TAAT--T--ATT..................................................................2111.001000010
...................................................................................................................................................................................................................................................................................................................................................................................................TTGATGCCCGTGCTGGAACT..............2011.001000001
................................................................................................................................................................................................................................................................................................................................................................................................AGATTGATGCCCGTGCTGGA.................2011.001000001
droGri2
ATATCATCTTCGA---CTTC-------------TCTA--------------------TAATTTACGTTCTGTTCGTGG--TTTGTTGACTAATCCA--ATAAAAAATAAAAACAAAAAACTGAAGCTGCAGC--AAA-----------------GC---AAAATACAACAGCAAAAAT--------GGCAACTAAAACTTTAACTTGTTGTTGTG-TCTAACCC------GGCGTTTAAAACACCTTTTAAAAACACACACACACAACAGCGGCTAATAATTC-----------ATTTAACCATA---T----CAAGAGGAGACTAAT----TCAATTTCTCATTATATATATATGTATAT-AT---ATAGGAACACCGAACGGAGATCGATGCACGCGCTGGAACCTTTGGGGCCTTCGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGTT--CTAACCTTT----GGCAATTGT---TT-----C---------------------AA---------TTTATT-TAAATCAGTAATTCTA---A--------------C-AAT----TT-------GAATTTCCTTTTTCGAATTT-TC---TTAGGAACATCGCACTGAAATCGATGCTAGAGCCGGCACTTTTGGTGCCTTCGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................................................................................................................................................................GAAATCGATGCTAGAGCCGGC.................2112.00200110
............................................................................................................................................................................................................................................................................................................................................................................................ACTGAAATCGATGCTAGAGCCGGCA................2512.00201100
.................................................................................................................................................................................................................................................................................................................................................................................................AATCGATGCTAGAGCCGGCA................2012.00201100
............................................................................................................................................................................................................................................................................................................................................................................................ACTGAAATCGATGCTAGAGCC....................2111.00101000
..............................................................................................................................................................................................................................................................................................................................................................................................TGAAATCGATGCTAGAGCCGGCA................2311.00100010
...................................................................................................................................................................................................................................................................................................................................................................................GAACATCGCACTGAAATCG...............................1911.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................CACTGAAATCGATGCTAGAGCCGGC.................2511.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................CTGAAATCGATGCTAGAGCCGGC.................2311.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................GATGCTAGAGCCGGCACTTTTGGT........2411.00100010
....................................................................................................................................................................................................................................................................................................................................................................................AACATCGCACTGAAATCGAT.............................2011.00101000
....................................................................................................................................................................................................................................................................................................................................................................................................CGATGCTAGAGCCGGCACTTTTGGT........2511.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................CGCACTGAAATCGATGCTAGAGCCGG..................2611.00100010
.............................................................................................................................................................................................................................................................................................................................................................................................CTGAAATCGATGCTAGAGCCGGCA................2411.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................GATGCTAGAGCCGGCACTTTTGGTGC......2611.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................GCACTGAAATCGATGCTAGAGCCGGCA................2711.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................TCGATGCTAGAGCCGGCA................1811.00101000
......................................................................................................................................................................................................................................................................................................................................................................................................ATGCTAGAGCCGGCACTTTTGGTG.......2411.00100010
............................................................................................................................................................................................................................................................................................................................................................................................ACTGAAATCGATGCTAGA.......................1811.00100010
dp5
CA-TCG------A---ATTCTTTCCTTAACCCTATTT--------------------CGTTCCACGTT-TGTTTGTTG--GTTTTTGACTAAT------T-------------TGAAGCTTGAAGCTGCAGC--AAATAAAT-----AAACCAAGCCCAG----G-------------------CAGCCAGCCACAGTTG---CATATTGTTGTT--CTAACCCCCACCAGGCGTTGAT---ATCTTTTT---------------------GG------------------GAATTATA---------GAATTTA----GGAACTAAT----CG-------T-TTGC--TATTCGGAATAC-CC---TTAGGAACACCGAACGGAGATTGATGCTCGCGCTGGAACCTTTGGGGCCTTCGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................................CGCGCTGGAACCTTTGGGGC......2013.0030110100000
...........................................................................................................................................................................................................................................................................................................................................................................................................CGCGCTGGAACCTTTGGGGCCT....2211.0010010000000
............................................................................................................................................................................................................................................................................................................................................................................................................GCGCTGGAACCTTTGGGGC......1911.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCGCGCTGGAACCTTTGGGGC......2511.0010000100000
......................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCGCGCTGGAACCTTTGGGGCCT....2711.0010000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................GATGCTCGCGCTGGAACCTTT...........2111.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................GCTCGCGCTGGAACCTTTGGGGCCT....2511.0010000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................GATGCTCGCGCTGGAACCTTTGGG........2411.0010000100000
....................................................................................................................................................................................................................................................................................................................................................................................AACACCGAACGGAGATTGATGCTCG........................2511.0010100000000
..................................................................TT-TGTTTGTTG--GTTTTTG..............................................................................................................................................................................................................................................................................................................................................1870.1410100000000
droPer2
ATTC----------------TTTCCTTAACCCTATTT--------------------CGTTCCACGTT-TGTTTGTTG--GTTTTTGACTAAT------T-------------TGAAGCTTGAAGCTGCAGC--AAATAAAT-----AAACCCAGCCCAG----G-------------------CAGCCAGCCACAGTTG---CATATTGTTGTT--CTAACCCCCACCAGGCGTTGAT---ATCTTTTT---------------------GG------------------GAATTATA---------GAATTTA----GGAACTAAT----CG-------T-TTGC--TATTCGGAATAC-CC---TTAGGAACACCGAACGGAGATCGATGCTCGCGCTGGAACCTTTGGGGCCTTCGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................ATCGATGCTCGCGCTGGA.................1813.003300000
.................................................................................................................................................................................................................................................................................................................................................................................................GATCGATGCTCGCGCTGGA.................1913.003300000
.................................................................................................................................................................................................................................................................................................................................................................................................GATCGATGCTCGCGCTGGAA................2012.002020000
.........................................................................................................................................................................................................................................................................................................................................................GC--TATTCGGAATAC-CC---TTAG..................................................2011.001000010
.............................................................................................................................................................................................................................................................................................................................................................................................CGGAGATCGATGCTCGCGCTG...................2111.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................ATCGATGCTCGCGCTGGG.................1811.001100000
...................................................................................................................................................................................................................................................................................................................................................................................GAACACCGAACGGAGATCGATGCT..........................2411.001010000
............................................................................................................................................................................................................................................................................................................................................................................................ACGGAGATCGATGCTCGCGCT....................2111.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................GATCGATGCTCGCGCTGGG.................1911.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................CGCGCTGGAACCTTTGGGGCCTT...2311.001100000
.................................................................GTT-TGTTTGTTG--GTTTTTGACT...........................................................................................................................................................................................................................................................................................................................................2211.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGATCGATGCTCGCGCTG...................2411.001001000
.....................................................................................................................................................................................................................................................................................................................................................................................................GATGCTCGCGCTGGAACCTTT...........2111.001010000
......................................................................................................................................................................................................................................................................................................................................................................................CACCGAACGGAGATCGATGCTCGC.......................2411.001010000
droAna3
ATCTCG------C---AGTGTTTTATCCAC-------CCAATAGTTCAGTTTAAC---GTTCCACGTTCT----------GTTTTTGACTAAT------G-------------CCA-------AGCTGCAGC--AAC-----TGATCC-T--CGAA---GG---CCAGCAGCCACTCGGGCAATCAGCCAGCCAC--------C--CATATTGTG--CTAACCC------GGCGCT------ATATTC-C---------------------AAC--------CCA-TC-AAA------GAA----------------------CAAGT----CA-------A-TTAA--TAACTTCATTTT-TC---TCAGGAACACCGCACGGAGATCGATGCTCGCGCCGGAACCTTCGGAGCCTTCGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................................................................................................................................................................................................TCGATGCTCGCGCCGGAACC..............2012.002200000
......................................................................................................................................................................................................................................................................................................................................................................................CACCGCACGGAGATCGATGCT..........................2111.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................GATCGATGCTCGCGCCGGAAC...............2111.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCGCGCCGGAACCTTCGG.........2211.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................CGCGCCGGAACCTTCGGAGC......2011.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................ACACCGCACGGAGATCGATGCC..........................2211.001000001
................................................................................................................................................................................................................................................................................................................................................................................CAGGAACACCGCACGGAGATCGAT.............................2411.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................ACACCGCACGGAGATCGATG............................2011.001000010
.................................................................................................................................................................................................................................................................................................................................................................................................GATCGATGCTCGCGCCGGAACC..............2211.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................CGGAGATCGATGCTCGCGCC....................2011.001000100
..........................................................................................................................................................................................................................................................................................................................................................................................GCACGGAGATCGATGCTCGCGCC....................2311.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................CGATGCTCGCGCCGGAACCT.............2011.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................TGCTCGCGCCGGAACCTTCGGAGC......2411.001001000
..................................................................................................................CA-------AGCTGCAGC--AAC-----TGATCC-T--C............................................................................................................................................................................................................................................................................2211.001010000
droBip1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGTG--CTAACCC------GGCGTT------ATATTC-C---------------------ATC--------CCA-TC-AAA------GACC--A---A--------------CTAAT----------------TAA--CACCTATATTTT-CC---TCAGGAACACCGCACCGAGATCGATGCTCGCGCCGGTACCTTCGGAGCCTTCGASizeHit CountTotal NormTotal
No Reads
droKik1
TT--------------------------------------------TAGTTTAAC----------------TTCGTTGTTACTTTTGACTAAT------T-------------TGA-------AGCTGCAGCGCAAT-----CGTTCC-T--CAGC---GG---C-----------------------CAA---GCATTG---C--CATGTTGTT--CTAACCC------GGCGTTGTT---AC--------------------------------------CATTCCCAAAGTCCACAA---------TGTTTC----AAAACTAAT----CCT------C-GTCT--CAATTCGAATCT-CCCCTTTAGGAACATCGCACCGAGATCGATGCCCGTGCCGGCACCTTCGGAGCCTTCGASizeHit CountTotal NormTotal
No Reads
droFic1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGTT--CTAACCC------GGCGTT------CC--------------------------------------CAATCC-CAAATCCACAACCCAA---A--------------CTAAT----TC-------G-CTTA--CTCCCCGAATTT-TC---CCAGGAACACCGCACGGAGATCGATGCCCGCGCCGGAACCTTTGGCGCCTTCGASizeHit CountTotal NormTotal
No Reads
droEle1
TT-------------------------------------------------------CGTTCTACGTT-T-------GTTACTTTTGACTAAT------A-------------CGA-------CGCTGCAGC--ATT-----TGATTA-T--CAGC---GG---C-------------------CAGCCAGCCAGCGTAG---C--AATGTTGTTCTCTAACCC------GGCGTTATT---AC--------------------------------------CAATCC-AAGAACTATGACCCAA---A--------------CTAAT----CC-------G-ATTTTACCCCAAAATTTC-CC---CCAGGAACATCGCACGGAGATCGATGCTCGCGCTGGAACCTTCGGCGCCTTCGASizeHit CountTotal NormTotal
No Reads
droRho1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGTT--CTAACCC------GGCGTT------TC--------------------------------------CAATCC-AAGAACCATGACCCAA---A--------------CTAAT----CC-------G-ATGT--TTCCACGAATTT-TC---ACAGGAACACCGCACGGAGATCGATGCTCGCGCTGGAACCTTCGGCGCCTTCGASizeHit CountTotal NormTotal
No Reads
droBia1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGTT--CTAACCC------GGCGTT------AC--------------------------------------CAATCCCAAACTGTATAGCCAAA---A--------------CTAAT----CC-------G-ATTT--CTCCATGAATTC-CC---GCAGGAACATCGCACGGAGATCGATGCCCGCGCCGGAACCTTCGGCGCCTTCGASizeHit CountTotal NormTotal
No Reads
droTak1
TT--------------------------------------------CAGTTTAACTTC-------GTTCTTTTC---GTTACTTTTGACTAAT------T-------------CGA-------CGCTGCAGC--AATCGATCTGATCC-T--CAGC---GG---CC-----C------------CAGCCAGCCAGCGTTG---C--AATGTTGTT--CTAACAC------GGCGTT------ACCTTATC---------------------GA---------TTTCTC-TAAATCCAT-----AA---A--------------CTAAT----CT-------A-TTTT--CACCCTGAATTTCCC---ACAGGAACATCGCACGGAGATCGATGCCCGCGCCGGAACCTTCGGTGCCTTTGASizeHit CountTotal NormTotal
No Reads
droEug1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGTT--CTAACAC------GGCGTT------AC--------------------------------------CAATGC-AAAATCAACGACTTAA---A--------------CTAAT----CT---------ATTT--CACCATGAATTT-CC---TTAGGAACACCGCACAGAGATCGATGCCCGCGCTGGAACTTTCGGCGCCTTCGASizeHit CountTotal NormTotal
No Reads
dm3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGTT--CTAACAC------GGCGTT------AC--------------------------------------CAAAGC-AAAAACCATGACCCAA---A--------------CTAAT----AT-------G-ATTT--CCCCATGAATTT-CC---CCAGGAACACCGAACGGAGATCGATGCGCGCGCCGGAACTTTCGGGGCTTTCGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................CGGAGATCGATGCGCGCGCCGG..................2217.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................ACCGAACGGAGATCGATGC...........................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................AACACCGAACGGAGATCGATG............................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
....................................................................................................................................................................................................................................................................................................................................................................................AACACCGAACGGAGATCGATGCGCGC.......................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGATCGATGCGCGCGCC....................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TGCGCGCGCCGGAACTTTCGGGGC......2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................GAACACCGAACGGAGATCG...............................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................GGAACACCGAACGGAGATCGA..............................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..........................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGATCGATGCGCG........................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
................................................................................................................................................................................................................TGTTGTT--CTAACAC------GGCGTT------AC--------------------------------------CAAA.......................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGATCGATGCGC.........................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................AACACCGAACGGAGATCGAT.............................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................ACGGAGATCGATGCGCGCGCCGGAA................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................GCGCCGGAACTTTCGGGGCT.....2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................ATGCGCGCGCCGGAACTTTCGGG........2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................GCCGGAACTTTCGGGGCTT....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................CACCGAACGGAGATCGATGCGCGCGC.....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................T----AT-------G-ATTT--CCCCATGAATTT-CC---......................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................CGATGCGCGCGCCGGAACTTTCGGG........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................ACACCGAACGGAGATCGATGCGCGCGC.....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................AACACCGAACGGAGATCGATGCGC.........................2411.0010000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................AGGAACACCGAACGGAGATCGATG............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................CATGAATTT-CC---CCAGGAACACCGAACGGA....................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGATCGATGCGCGCGCCGGA.................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................CGATGCGCGCGCCGGAACTTTCGGGGCTT....2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................TGTTGTT--CTAACAC------GGCGTT------AC--------------------------------------CA.........................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................ACAC------GGCGTT------AC--------------------------------------CAAAGC-AAAAA...............................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................GATCGATGCGCGCGCCGGAACTT.............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................TGAATTT-CC---CCAGGAACACCGAACGGA....................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................GGAACACCGAACGGAGATCGATGC...........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
............................................................................................................................................................................................................................................................................................................................................................................................ACGGAGATCGATGCGCGCGCCGGA.................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................CCGAACGGAGATCGATGCGCG........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................AACAC------GGCGTT------AC--------------------------------------CAAAGC-AAAAAC..............................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................TGCGCGCGCCGGAACTTTCGGG........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................ACACCGAACGGAGATCGATGCGCG........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................TAACAC------GGCGTT------AC--------------------------------------CAAAGC-AAAAACC.............................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................ATCGATGCGCGCGCCGGAACTTTCTTT........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................ACACCGAACGGAGATCGATGCGCGC.......................2511.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................CGGAGATCGATGCGCGCGCCG...................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................GGAGATCGATGCGCGCGCCGGA.................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................T-CC---CCAGGAACACCGAACGGAGATCGA..............................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................GAATTT-CC---CCAGGAACACCGAACGGA....................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................CGAACGGAGATCGATGCG..........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................................................................................................................................................................................................................................................................................................................................................................AATTT-CC---CCAGGAACACCGAA........................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................ACACCGAACGGAGATCGATGCGC.........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................CGAACGGAGATCGATGCGCGCGCCG...................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................CGAACGGAGATCGATGCGC.........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................AGGAACACCGAACGGAGATCGATGCGC.........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..........................................................................................................................................................................................................................................................................................................................................................................CC---CCAGGAACACCGAACGGAGATCGA..............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
....................................................................................................................................................................................................................................................................................................................................................................................................CGATGCGCGCGCCGGAACTTTCGGGG.......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GATGCGCGCGCCGGAACTTT............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................ACACCGAACGGAGATCGATG............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................ACCGAACGGAGATCGATGCGC.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................GGAACACCGAACGGAGATCGATGCGC.........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.................................................................................................................................................................................................................................................................................................AAAAACCATGACCCAA---A--------------CTAAT----AT-------G-ATT...........................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................AACGGAGATCGATGCGCGC.......................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................CACCGAACGGAGATCGAT.............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................CACCGAACGGAGATCGATG............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................CGCGCGCCGGAACTTTCGGGGTA.....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TGCGCGCGCCGGAACTTTCGGGGCT.....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................GGAGATCGATGCGCGCGCC....................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
..................................................................................................................................................................................................................................................................................................................................................................................GGAACACCGAACGGAGATCGATG............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................CACCGAACGGAGATCGATGC...........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGATCGATGCGCGCGCCG...................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TCGATGCGCGCGCCGGAACTTTCGGG........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................ATCGATGCGCGCGCCGGA.................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGATCGATGCGCGC.......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................GCGCGCCGGAACTTTCGGGG.......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................ACCGAACGGAGATCGATGCGCGC.......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................TGCGCGCGCCGGAACTTT............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................GCCGGAACTTTCGGGGCT.....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................TT--CCCCATGAATTT-CC---CCAG..................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................TGTT--CTAACAC------GGCGTT------AC--------------------------------------CAAAGC-A...................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................CCAGGAACACCGAACGGAGATCGATGC...........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
droSim2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGTT--CTAACAC------GGCGTT------AC--------------------------------------CAAAGC-AAAATCCATGACCCAA---A--------------CTAAT----CT-------G-ATTT--CCCCATGAATTT-CC---CCAGGAACACCGCACGGAGATCGATGCGCGCGCCGGAACTTTCGGCGCCTTCGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................................................GGAGATCGATGCGCGCGCCGGA.................2211.00100000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................CACGGAGATCGATGCGCGC.......................1911.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................CGCACGGAGATCGATGCGCGCGCC....................2411.00100000000000100000
droSec2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGTT--CTAACAC------GGCGTT------AC--------------------------------------CAAAGC-AAAATCCATGACCCAA---A--------------CTAAT----CT-------G-ATTT--CCCCATGAATTT-CC---CCAGGAACACCGCACGGAGATCGATGCGCGCGCCGGAACTTTCGGCGCCTTCGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................................................................................................................................................................................................................................CGATGCGCGCGCCGGAACTTTCGGC........2511.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................CACGGAGATCGATGCGCGCGCCGGAA................2611.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................GCACGGAGATCGATGCGC.........................1811.0010010
......................................................................................................................................................................................................................T--CTAACAC------GGCGTT------AC--------------------------------------CAAAG......................................................................................................................................2111.0011000
......................................................................................................................................................................................................................................................................................................................................................................................CACCGCACGGAGATCGATGCGC.........................2211.0010010
droYak3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGTT--CTAACAC------GGCGTT------AC--------------------------------------CAAAGC-GAAGTCCATGACCCTA---A--------------CTAAT----CT-------G-ATTT--CCCCATGAATTT-CC---CCAGGAACACCGCACGGAGATCGATGCCCGCGCTGGAACTTTCGGCGCCTTCGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................GATCGATGCCCGCGCTGGAACTTTCGG.........2711.00100100000000
..............................................................................................................................................................................................................................................................................................................................................................................................GGAGATCGATGCCCGCGCTG...................2011.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................CGATGCCCGCGCTGGAACT..............1911.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GATGCCCGCGCTGGAACTTTCGGCGCCC....2811.00100100000000
......................................................................................................................................................................................................................................................................................................................................................................................CACCGCACGGAGATCGATGCCCGCG......................2511.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................GCACGGAGATCGATGCCCGCG......................2111.00100010000000
.....................................................................................................................................................................................................................................................................................................................................................................................ACACCGCACGGAGATCGATGCCC.........................2311.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................GGAGATCGATGCCCGCGCTGGAAC...............2411.00100100000000
....................................................................................................................................................................................................................................................................................................................................................................................AACACCGCACGGAGATCGATG............................2111.00100000010000
droEre2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGTT--CTAACAC------GGCGTT------AC--------------------------------------CAA-GC-AAAGTCCATGACCCTA---A--------------CTAAT----CT-------G-ATTT--CCCCATGAATTT-CC---ACAGGAACACCGCACGGAGATCGATGCCCGCGCCGGCACTTTCGGCGCCTTCGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................GCACGGAGATCGATGCCCGCG......................2112.0020000020
......................................................................................................................................................................................................................................................................................................................................................................................CACCGCACGGAGATCGATGC...........................2011.0010000010
...................................................................................................................................................................................................................................................................................................................................................................................GAACACCGCACGGAGATCGATGC...........................2311.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................AACACCGCACGGAGATCGATGC...........................2211.0010000010
....................................................................................................................................................................................................................................................................................................................................................................................AACACCGCACGGAGATCGATGCCCGC.......................2611.0010000010
.................................................................................................................................................................................................................................................................................................................................................................................................GATCGATGCCCGCGCCGGCACTT.............2311.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................GGAACACCGCACGGAGATCGA..............................2111.0010000100
.................................................................................................................................................................................................................................................................................................................................................................................................GATCGATGCCCGCGCCGGC.................1911.0010100000

Generated: 05/19/2015 at 10:40 AM