ID:

dvi_5675

 Coordinate:

scaffold_12875:7858488-7858638 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.4 -18.2 -18.2

Flybase annnotation

exon [dvir_GLEANR_6973:1]; CDS [Dvir\GJ21630-cds]; intron [Dvir\GJ21630-in]; Antisense to intron [Dvir\GJ20708-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATGTGGAGGTGCAGAACGGCAAGGTTACCGCTTGCTATGACAGTATCAAGGTCAGTATTATGCCCAACCAGTATATAGAATGCCAAAACCTATGCCCACATGTACCCATTACCACTCCGCTTCTACCGCGTATATGTATGGAATGTAGCTTGTAAGCTTTTATATTTTTAACTTTAATCCATCATGGCTTAAGTACTCCACCACCCCCCTCCAACAATGAGACATCCAAACCTGCCCAGGTCCCAATGCAT
**************************************************...((((((..(((........((((((((.((...((.((((.((.((((((((........................))))))))..))...)))).))....))))))))))....................)))...))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M027
male body		 M061
embryo
 M028
head
 GSM1528803
follicle cells		 SRR060657
140_testes_total
 V116
male body		 SRR1106723
embryo_12-14h
 SRR060664
9_males_carcasses_total
 V047
embryo
ATGTGGAGGTGCAGAACGGCAAGGTTAC............................................................................................................................................................................................................................... 28 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
...........................CCGCTTGCTATGACAGTATCAAGAT....................................................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................AAGGTTACCGCTTGCTATGACAGTATC............................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................CTATGACAGTATCAAGGT....................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.TGTGGAGGTGCAGAACGGC....................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
........GTGCAGAACGGCAAGGTTAC............................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
......................GGTTACCGCTTGCTATGAC.................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........GCAGAACGGCAAGGTTACCGCTT.......................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............AACGGCAAGGTCACCGCGTGCTACGAC.................................................................................................................................................................................................................. 27 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................TCATGGCTTAAGTACTCC.................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.................................GCTATGACAGTATCAAGGGAC..................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................GTATTCCACCACCCCCCGG........................................ 19 3 3 0.33 1 0 0 0 0 0 0 0 1 0 0
..................................CTATGACAGTATCAAGATAAT.................................................................................................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 1 0
.................................................................................................................................................................................CCCAACATGGCTTATGTACT...................................................... 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TACACCTCCACGTCTTGCCGTTCCAATGGCGAACGATACTGTCATAGTTCCAGTCATAATACGGGTTGGTCATATATCTTACGGTTTTGGATACGGGTGTACATGGGTAATGGTGAGGCGAAGATGGCGCATATACATACCTTACATCGAACATTCGAAAATATAAAAATTGAAATTAGGTAGTACCGAATTCATGAGGTGGTGGGGGGAGGTTGTTACTCTGTAGGTTTGGACGGGTCCAGGGTTACGTA
**************************************************...((((((..(((........((((((((.((...((.((((.((.((((((((........................))))))))..))...)))).))....))))))))))....................)))...))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528803
follicle cells		 V053
head
 V047
embryo
 SRR060687
9_0-2h_embryos_total
 SRR060673
9_ovaries_total
 M047
female body
 SRR060666
160_males_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
..........................................CATCGTTCCACTCGTAATAC............................................................................................................................................................................................. 20 3 8 4.00 32 32 0 0 0 0 0 0 0
..........................TGTCGAACCATACTGTCATAAT........................................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0
...........................GGAGAACTAGACTGTCATAGT........................................................................................................................................................................................................... 21 3 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................GGGGAGGTTGTTAGTCTGA........................... 19 2 2 0.50 1 0 0 1 0 0 0 0 0
..........................................CATCGTTCCAATCGTAATAC............................................................................................................................................................................................. 20 3 4 0.25 1 1 0 0 0 0 0 0 0
...............................................................................................................GGTGAGGCGAGGCTGGCTC......................................................................................................................... 19 3 4 0.25 1 0 0 0 1 0 0 0 0
...........................................................................................................TACTGGTGAGGTGAAGAT.............................................................................................................................. 18 2 7 0.14 1 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................ATGAGCTGGTGGTAGGAGG....................................... 19 3 19 0.05 1 0 1 0 0 0 0 0 0
...........................................ATAGTGCAAGTCATAGTAC............................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 1
..............................................................................................................................................................................................................................CTAGGCTTGGACGCGTCC........... 18 3 20 0.05 1 0 0 0 0 0 0 1 0
...........................................................................................................TATGGGTGAGGCGAAGGTG............................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:7858438-7858688 + dvi_5675 ATGTGGAGGTGCAGAACGGCAAGGTTACCGCTTGCTATGACAGTATCAAGGTCAGTATTA-TGCCC-------------------------------------------------AACCAGTATATAGAATGCCAAAACC-----------------------------TATGCCCACA--TGT--------------------------------------------------------------------------------------A----------------------------------------------C-CCA-TTACCACTCC------------------------------------GCTTCTACCGCGTAT----ATGTATGGAATGTAGCTTGTAAG---CTTTTATATTTTTAACTT-TAA-TCCATCAT---------------------------------GGCT---TAAGTA------------------------C-TCCACC------------ACCCCC-CTCCAACAATGAGACATCCAAACCTG--CCCAGG---TCCCAA----------------TGCA--T
droMoj3 scaffold_6496:19442221-19442526 - ATGTTGAGGTGCAGAACGGCAAGGTTACCGCTTGCTATGACAGTATCAAGGTCAGTATCC-AAAA----------------------------ACC------------------CAACCA--------------------------ACCTGCCTATGATTATCAATATCTATATCTATATATGTAAATAAATATATATATATATATATATAGAGT---G--------------------CAG----------------------------------------------------------------------ACAAACCCCA-TTAACACTCT------------------------------------GCTTCTATCGTGTATC---GTGTATGGAATGTAGCTTGTAAG---CTTTTATTTA--TTACTTTTAAT-ACATCAT---------------------------------GGCT---TCAGTA------------------------C-TCTACCCCAAGCCATACCACCCCCACCCCAACA----AA---CAAAAA-ACCT-ATATGAAAACCCAT-T-----------------G--C
droGri2 scaffold_15245:1357217-1357468 + ATGTCGAAGTGCAGAACGGCAAGGTTACCGCTTGCTATGACAGTATCAAGGTCAGTACCC-AAAA---------CAAAACAAA---------------------------AAA------AA-------AACAACAAAAAA-AATCCCCCTTC------------------------ACA--T-----------------------------------------------------------------------------------------GA----------------------------AA--------------C-CCATTTGCCATTCT------------------------------------GCTTCTATCGTGTAT----ATGTATGGAATGTAGCTTGTAAG---CTTTATACTA--TTATACTTTAATCCATCAT---------------------------------GGCT---TAAGTA------------------------C-TCTACC---AACCACCCCACCCTC-CCCCAAAA----GA---CCAAAC-TCC--TTAGG---C----------------------CCC--T
droWil2 scf2_1100000004822:645068-645364 - ATGTGGAGGTCCAGAATGGCAAGGTCACTGCTTGTTACGACAGCATTAAGGTCAGTATTA-ATTAA--CCAAAAAAAAAAAAAAAAAC----------------GA-------TCAATTAA--------AACCTCAAACCAAACCCCCCCTC------------------------T---------------------------------------------------------------------------------------------CTT----------------------------AT-------T--T---C-CCACCCTCCATTA-AACAAAACCAAAAAACCAAAAAAAAAAAAAAAAAACACATTTCTTGCTT--CTTTGTGTA---TGTATAGTTTGTAAGAAATTTTCAT----------------------AT---------------------------------GACC---CCCGCC------------------------T-CC--CC---AACCATACCGCCACC-CACAAA--------------AAC-TTC--TCCTA---CTCTT-TT-TCTAGAAACCAACAACA--T
droPer2 scaffold_4:39322-39526 - ATGTGGAGGTACAGAACGGCAAGGTCACCGCCTGCTACGACAGCATCAAGGTCAGTATATGCCCCAA------------------------ACCACCAACAA-TG----------------------------------------------------ACCCCCAACCCCCACACCCC-AC-----------------------------------------------AACCCCAGTCCATA----------------------------------------------------------------------------------------CCCC------------------------------------CCGACTTTTGCTT--CGT--T--GTGGATTGTAGATTGTAAG---CTTTA-------TGATTTTTCACCTCAAAATA---------------------------------AAA---TATA--------------------------------------------------------------------------ACCCA--CCCAGA---------T---------------TTCG--T
droAna3 scaffold_13266:13460659-13460867 - dan_1981 ATGTGGAGGTCCAGAACGGCAAGGTCACCGCCTGCTACGACAGCATCAAGGTCAGTATTC-CCCAAA------AAAAAAAAAAA--------------------------AAA------AG-------------------------------------------------------------------------------------------AGC-------------------------AT----------------------------------------------------------------------CCAA-----------------------------------------------------TCCTCTATTGCTT--C---GT--GTGACTCGTAGACCGTAAG---CTTCCAGTCTTTTGATTTCTCATCCCACAATA---------------------------------TAT---TATATA---------ATCCTCTGATAATACCAAGTACC---AACT-------------------------------------CC-CCCCGC---------CC-C-------------CAA--C
droBip1 scf7180000396759:2676570-2676803 + ATGTGGAGGTCCAGAACGGCAAGGTCACCGCCTGCTACGACAGCATCAAGGTCAGTATTC-CCCAAA------AAATAGACCC---------------------AAAAATAAA------AG-------------------------------------------------------------------------------------------ACCCAAC---------------------AC-------------------TCCCCC-------------AA------------------AAACCACA----CCAA-----------------------------------------------------TCCTCTATTGCTT--C---GT--GTGACTTGTAGACCGTAAG---CTTCCAGTCTTTTGATTTCTCATCCCACAATA---------------------------------TAT---TATATA---------ATCCTAAGATAAAACC-AGTACC---AACTCCC-------------------------------------CCCCGC---------CT-C--CGA-------------A
droKik1 scf7180000302476:3048585-3048766 - ACGTGGAGGTGCAGAACGGCAAGGTCACCGCTTGTTACGACAGCATCAAGGTCAGTATTC-CCCC----------------------------CCCA----A-ACCTA--AGCCCCTCACG-------------------------------------------------------------------------------------------AAA-----------------------------------------------------------A-------TAAAACCACCCCT------AC--------------------------TCCC------------------------------------CCCTCTATTGCTT--C---GT--GTGACTCGTAGACCGTAAG---CTTCAAGTCTTTTAATTTCTCATCCCACAAAAAAA------------------------------------T----------------------------------------------------------------------------------------------------------GA-------------A
droFic1 scf7180000453948:2287332-2287556 - ACGTGGAGGTCCAGAACGGCAAGGTCACCGCCTGTTACGACAGCATCAAGGTCAGTATCC-CCC----------------------------------------GATA--A--CGAACTAG-------------------------------------------------------------------------------------------AC-----------------------------------------------TCCCTC----GAATCCCCCAA------------------AAACCCCTCCCCCCAA------------------------------------------------------TCTCTATCGCTT--C---GT--GTGACTCGTAGACCGTAAG---CTT-ACGACTTATGATTTCTCATCCCACAAAAACAAGAAAA-AAAAATA----------------TAT-A-T------A--TATG-----------------------------------------------------------------------------ATAATCCAA-TAC--CGAT--T--CCCGA--T
droEle1 scf7180000491214:1150785-1150997 - ATGTGGAGGTCCAGAACGGCAAGGTCACCGCCTGCTACGACAGCATCAAGGTCAGTATCC-CCTA--------------------------------------AGCAAACAAACGAACTAA-------------------------------------------------------------------------------------------AC-----------------------------------------------TCCTCCAACCGA----------------------------AA-------C--T---C---------CTACCC------------------------------------CCTTCTATTGCTT--C---GT--GTGACTCGTAGTTTGTAAG---CTTTAAGACTTATGATTTCTCATCCCACCAAAAAAA-----------------------------TAT--------GAT--TATG-----------------------------------------------------------------------------ATAAGCAAC-TAC--CGAA--A--CCCCAATT
droRho1 scf7180000780084:145914-146128 - ACGTGGAGGTCCAGAACGGCAAGGTCACCGCCTGCTACGACAGCATCAAGGTCAGTATTC-CCCT----------------------------CCCC----CCAGC----AAACGAACTAG-------------------------------------------------------------------------------------------ACTCCCC--------------------AATCT-------------------------------------------------------------------------------------CCCC------------------------------------CCCTCTATTGCTT--C---GT--GTGACTCGTAGAATGTAAG---CTTTAAGATTTATGATTTCTCATCCCACAAAAAAAACCAAA-AAAAA---CAAA------------------------A--TATG-----------------------------------------------------------------------------ATAAGCCAA-TAC--CGAA--T--CCCCAATT
droBia1 scf7180000301754:5412059-5412240 + ACGTGGAGGTCCAGAACGGCAAGGTCACCGCCTGCTACGACAGCATCAAGGTCAGTACCC-CAG----------------------------------------------AATCGAACCAG-------------------------------------------------------------------------------------------AGC---C--------------------CAC----------------------------------------------------------------------CCAA-----------------------------------------------------CCCCCTATTGCTT--C---GT--GTGACTCGTAGA-CGTAAG---CCT-AGGACTCTTTATTTCTCATCCCACCAAA---------------------------------TAC---TA--------TTCGATA---------------------------------------------------------------------------CGATCCAA-T-C--CGAA--C---CCCG--T
droTak1 scf7180000415345:219507-219715 + ACGTGGAGGTCCAGAACGGCAAGGTCACCGCCTGCTACGACAGCATCAAGGTCAGTATC---------------------------------------------------AACCTAACTAG-------------------------------------------------------------------------------------------TACC--C---------------------------AACCACCCACTCAACTCC------CGA----------------------------AT--------------------------CTCC------------------------------------CCCTCTATTGCTT--C---GTGTGTGACTCGTAGACTGTAAG---CTTTAAGACTTATGATTTCTCATCCCAAAAAA---------------------------------AAT-C-T------T--TATG-ATCT-------------------------------------------------------------------------TAAACCAA-TAC--CGAAAAC--CCCCA--T
droEug1 scf7180000409672:1958236-1958445 - ACGTGGAGGTCCAGAACGGCAAGGTCACCGCCTGCTACGACAGCATCAAGGTCAGTATTC-CTTCTAACGAGAAAAACAGAAAATCCCTCTACCCCC--------------------TACG-------------------------------------------------------------------------------------------AA------------------------------------------------------------A---------------TCCTTAAAAAAAAATCCTACC------------------ACCA------------------------------------CCTTCTATTGCTT--C---GT--GTGACTTGTAGACCGTAAG---CTTTAAGTCTTATAATTTTTCATCCCACAAAAAAA------------------------------------GAAAGA---------AA-----------------------------------------------------------------------------------------CGA-------------A
dm3 chr2R:13163519-13163734 + ACGTGGAGGTCCAGAACGGCAAGGTCACCGCCTGCTACGACAGCATCAAGGTCAGTACTC-CCAT----------------------------ACCC----T-TGTTA--AACCGAACTAG-------------------------------------------------------------------------------------------AAACACC--------------------TACCCTCAAC-------------------------------------------------------------C--------------ACCAACTC------------------------------------CCCTCTATTGCTT--C---GT--GTGACTCGTAGACCGTAAG---CTTTAAGTCT--TGATTTCTCATCCCACAAAAAAAAAGAAAAAATAA--AATAAACAAGAAATA---ATAT-------ACATA--------------------------------------------------------------------------------------------------------------T
droSim2 2r:13816179-13816385 + dsi_16042 ACGTGGAGGTCCAGAACGGCAAGGTCACCGCCTGCTACGACAGCATCAAGGTCAGTACTC-CCAC----------------------------CCCC----A-TGTTA--AACCGTACTAG-------------------------------------------------------------------------------------------AAACACC--------------------TACCCTC--------------------------------------------------------------------AA-----------------------------------------------------CCCTCTATTGCTT--C---GT--GTGACTCGTAGACCGTAAG---CTTTAAGTCT--TGATTTCTCATCCCACAAAAAGAAAAAAA-AATAATAAAAAAATATGAAATA---ATAT-------ACATA--------------------------------------------------------------------------------------------------------------T
droSec2 scaffold_1:10665279-10665486 + ACGTGGAGGTCCAGAACGGCAAGGTCACCGCCTGCTACGACAGCATCAAGGTCAGTACTC-CCAC----------------------------CCCC----A-TGTTA--AACCGTACTAG-------------------------------------------------------------------------------------------AAACACC--------------------TACCCTC--------------------------------------------------------------------AA-----------------------------------------------------CCCTCTATTGCTT--C---GT--GTGACTCGTAGACCGTAAG---CTTTAAGTCT--TGATTTCTCATCCCACAAAAAAAAAAAAATAATAATAAAAAAATAAGAAATA---ATAT-------ACATA--------------------------------------------------------------------------------------------------------------T
droYak3 2R:18309726-18309957 - ACGTGGAGGTCCAGAACGGCAAGGTCACCGCCTGCTACGACAGCATCAAGGTCAGTATCA-CCCCC-------------------------ACCCCCCACAA-TGTTA--AACCGAACTAG-------------------------------------------------------------------------------------------AGCCACCAACCACCAAA---CCGTCTATACCCTC--------------------------------------------------------------------A--------------ACTC------------------------------------CCCTCTATTGCTT--C---GT--GTGACTCGTAGACCGTAAG---CTTTAAGTCT--TGATTTCTCATTCCACCAAAAAAAAAAAA-----------AAATTAGAAATA---ATAT-------ATATT-----T--------------------------------------------------------------------------CAAAGCAA-----------------------
droEre2 scaffold_4845:12691649-12691883 - der_1118 ACGTGGAAGTCCAGAACGGCAAGGTCACCGCCTGCTACGACAGCATCAAGGTCAGTACTG-CCCCA-----------------------------------A-TGTTA--AACCGAACTAG-------------------------------------------------------------------------------------------AACCACC--------------------AAC-------------------TCCCTT----------------------------------AA-CT---------------------CAACTC------------------------------------TCCTCTATTGCTT--C---GT--GTGACTCGTAGACCGTAAG---CTTTAAGTCT--TGATTTCTCATCCCACCAAAAAAAAAAAAAAA-AA---AAAAAAAAAAAATC---AGAT-------ATATATT-----------------------------------------------------------------------------TCAAACCAA-TAC--CAAA--T--CCCCA--T

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ATGTGGAGGTGCAGAACGGCAAGGTTACCGCTTGCTATGACAGTATCAAGGTCAGTATTA-TGCCC-------------------------------------------------AACCAGTATATAGAATGCCAAAACC-----------------------------TATGCCCACA--TGT--------------------------------------------------------------------------------------A----------------------------------------------C-CCA-TTACCACTCC------------------------------------GCTTCTACCGCGTAT----ATGTATGGAATGTAGCTTGTAAG---CTTTTATATTTTTAACTT-TAA-TCCATCAT---------------------------------GGCT---TAAGTA------------------------C-TCCACC------------ACCCCC-CTCCAACAATGAGACATCCAAACCTG--CCCAGG---TCCCAA----------------TGCA--TSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
ATGTGGAGGTGCAGAACGGCAAGGTTAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002200000000000000000000000000000000000000000000000000000000000000
....................AAGGTTACCGCTTGCTATGACAGTATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
..................................CTATGACAGTATCAAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.TGTGGAGGTGCAGAACGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000010000000000000000000000000000000000000000000000000000000
........GTGCAGAACGGCAAGGTTAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
......................GGTTACCGCTTGCTATGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..........GCAGAACGGCAAGGTTACCGCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAT---------------------------------GGCT---TAAGTA------------------------C-TCC........................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
.................................GCTATGACAGTATCAAGGGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.501010000000000000000000000000000000000000000000000000000000000000
droMoj3
ATGTTGAGGTGCAGAACGGCAAGGTTACCGCTTGCTATGACAGTATCAAGGTCAGTATCC-AAAA----------------------------ACC------------------CAACCA--------------------------ACCTGCCTATGATTATCAATATCTATATCTATATATGTAAATAAATATATATATATATATATATAGAGT---G--------------------CAG----------------------------------------------------------------------ACAAACCCCA-TTAACACTCT------------------------------------GCTTCTATCGTGTATC---GTGTATGGAATGTAGCTTGTAAG---CTTTTATTTA--TTACTTTTAAT-ACATCAT---------------------------------GGCT---TCAGTA------------------------C-TCTACCCCAAGCCATACCACCCCCACCCCAACA----AA---CAAAAA-ACCT-ATATGAAAACCCAT-T-----------------G--CSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....TGAGGTGCAGAACGGCAAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.......................GTTACCGCTTGCTATGACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
....................AAGGTTACCGCTTGCTATGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..........GCAGAACGGCAAGGTTACCGCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..........GCAGAACGGCAAGGTTACCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.TGTTGAGGTGCAGAACGGCAAGGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.....................AGGTTACCGCTTGCTATGACAGTATCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.....................AGGTTACCGCTTGCTATGACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...............ACGGCAAGGTTACCGCTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.....................AGGTTACCGCTTGCTATGACAGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..........GCAGAACGGCAAGGTTACCGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
droGri2
ATGTCGAAGTGCAGAACGGCAAGGTTACCGCTTGCTATGACAGTATCAAGGTCAGTACCC-AAAA---------CAAAACAAA---------------------------AAA------AA-------AACAACAAAAAA-AATCCCCCTTC------------------------ACA--T-----------------------------------------------------------------------------------------GA----------------------------AA--------------C-CCATTTGCCATTCT------------------------------------GCTTCTATCGTGTAT----ATGTATGGAATGTAGCTTGTAAG---CTTTATACTA--TTATACTTTAATCCATCAT---------------------------------GGCT---TAAGTA------------------------C-TCTACC---AACCACCCCACCCTC-CCCCAAAA----GA---CCAAAC-TCC--TTAGG---C----------------------CCC--TSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................CCGCTTGCTATGACAGTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
............................................................................AAACAAA---------------------------AAA------AA-------AACAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05110
droWil2
ATGTGGAGGTCCAGAATGGCAAGGTCACTGCTTGTTACGACAGCATTAAGGTCAGTATTA-ATTAA--CCAAAAAAAAAAAAAAAAAC----------------GA-------TCAATTAA--------AACCTCAAACCAAACCCCCCCTC------------------------T---------------------------------------------------------------------------------------------CTT----------------------------AT-------T--T---C-CCACCCTCCATTA-AACAAAACCAAAAAACCAAAAAAAAAAAAAAAAAACACATTTCTTGCTT--CTTTGTGTA---TGTATAGTTTGTAAGAAATTTTCAT----------------------AT---------------------------------GACC---CCCGCC------------------------T-CC--CC---AACCATACCGCCACC-CACAAA--------------AAC-TTC--TCCTA---CTCTT-TT-TCTAGAAACCAACAACA--TSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............AATGGCAAGGTCACTGCTTGTTACGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00220000
.................................GTTACGACAGCATTAAGGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200011
....................AAGGTCACTGCTTGTTACGACAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00201010
.....................AGGTCACTGCTTGTTACGACAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
......AGGTCCAGAATGGCAAGGTCACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
..........CCAGAATGGCAAGGTCACTGCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
.......GGTCCAGAATGGCAAGGTCACTGCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
......AGGTCCAGAATGGCAAGGTCACTGCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
.......GGTCCAGAATGGCAAGGTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
....................AAGGTCACTGCTTGTTACGACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000
........GTCCAGAATGGCAAGGTCACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
......................GGTCACTGCTTGTTACGACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
....................AAGGTCACTGCTTGTTACGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
droPer2
ATGTGGAGGTACAGAACGGCAAGGTCACCGCCTGCTACGACAGCATCAAGGTCAGTATATGCCCCAA------------------------ACCACCAACAA-TG----------------------------------------------------ACCCCCAACCCCCACACCCC-AC-----------------------------------------------AACCCCAGTCCATA----------------------------------------------------------------------------------------CCCC------------------------------------CCGACTTTTGCTT--CGT--T--GTGGATTGTAGATTGTAAG---CTTTA-------TGATTTTTCACCTCAAAATA---------------------------------AAA---TATA--------------------------------------------------------------------------ACCCA--CCCAGA---------T---------------TTCG--TSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................GTCACCGCCTGCTACGACAGCATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002200000
........GTACAGAACGGCAAGGTCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
........GTACAGAACGGCAAGGTCACCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
ATGTGGAGGTACAGAACGGCAAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
ATGTGGAGGTACAGAACGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
..GTGGAGGTACAGAACGGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
.TGTGGAGGTACAGAACGGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
ATGTGGAGGTACAGAACGGCAAGGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
droAna3
ATGTGGAGGTCCAGAACGGCAAGGTCACCGCCTGCTACGACAGCATCAAGGTCAGTATTC-CCCAAA------AAAAAAAAAAA--------------------------AAA------AG-------------------------------------------------------------------------------------------AGC-------------------------AT----------------------------------------------------------------------CCAA-----------------------------------------------------TCCTCTATTGCTT--C---GT--GTGACTCGTAGACCGTAAG---CTTCCAGTCTTTTGATTTCTCATCCCACAATA---------------------------------TAT---TATATA---------ATCCTCTGATAATACCAAGTACC---AACT-------------------------------------CC-CCCCGC---------CC-C-------------CAA--CSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.TGTGGAGGTCCAGAACGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.003100002
.......GGTCCAGAACGGCAAGGTCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.003000003
....GGAGGTCCAGAACGGCAAGGTCACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002100010
.......GGTCCAGAACGGCAAGGTCACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000011
.TGTGGAGGTCCAGAACGGCAAGGTCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
.TGTGGAGGTCCAGAACGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.TGTGGAGGTCCAGAACGGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
ATGTGGAGGTCCAGAACGGCAAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
.....................AGGTCACCGCCTGCTACGACAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
....................AAGGTCACCGCCTGCTACGACAGCATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
......AGGTCCAGAACGGCAAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
..........CCAGAACGGCAAGGTCACCGCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
.............................GCCTGCTACGACAGCATCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..GTGGAGGTCCAGAACGGCAAGGTCACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.......GGTCCAGAACGGCAAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
...............ACGGCAAGGTCACCGCCTGCTACGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
....GGAGGTCCAGAACGGCAAGGTCACCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
..GTGGAGGTCCAGAACGGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
...................CAAGGTCACCGCCTGCTACGACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..........CCAGAACGGCAAGGTCACCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
ATGTGGAGGTCCAGAACGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.....GAGGTCCAGAACGGCAAGGTCACCGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
....GGAGGTCCAGAACGGCAAGGTCACCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
...........................CCGCCTGCTACGACAGCATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
........GTCCAGAACGGCAAGGTCACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.............GAACGGCAAGGTCACCGCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
....................AAGGTCACCGCCTGCTACGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.........................CACCGCCTGCTACGACAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
...................CAAGGTCACCGCCTGCTACGACAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.............GAACGGCAAGGTCACCGCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..................GCAAGGTCACCGCCTGCTACGACAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.................GGCAAGGTCACCGCCTGCTACGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
....................AAGGTCACCGCCTGCTACGACAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
droBip1
ATGTGGAGGTCCAGAACGGCAAGGTCACCGCCTGCTACGACAGCATCAAGGTCAGTATTC-CCCAAA------AAATAGACCC---------------------AAAAATAAA------AG-------------------------------------------------------------------------------------------ACCCAAC---------------------AC-------------------TCCCCC-------------AA------------------AAACCACA----CCAA-----------------------------------------------------TCCTCTATTGCTT--C---GT--GTGACTTGTAGACCGTAAG---CTTCCAGTCTTTTGATTTCTCATCCCACAATA---------------------------------TAT---TATATA---------ATCCTAAGATAAAACC-AGTACC---AACTCCC-------------------------------------CCCCGC---------CT-C--CGA-------------ASizeHit CountTotal NormTotal
No Reads
droKik1
ACGTGGAGGTGCAGAACGGCAAGGTCACCGCTTGTTACGACAGCATCAAGGTCAGTATTC-CCCC----------------------------CCCA----A-ACCTA--AGCCCCTCACG-------------------------------------------------------------------------------------------AAA-----------------------------------------------------------A-------TAAAACCACCCCT------AC--------------------------TCCC------------------------------------CCCTCTATTGCTT--C---GT--GTGACTCGTAGACCGTAAG---CTTCAAGTCTTTTAATTTCTCATCCCACAAAAAAA------------------------------------T----------------------------------------------------------------------------------------------------------GA-------------ASizeHit CountTotal NormTotal
No Reads
droFic1
ACGTGGAGGTCCAGAACGGCAAGGTCACCGCCTGTTACGACAGCATCAAGGTCAGTATCC-CCC----------------------------------------GATA--A--CGAACTAG-------------------------------------------------------------------------------------------AC-----------------------------------------------TCCCTC----GAATCCCCCAA------------------AAACCCCTCCCCCCAA------------------------------------------------------TCTCTATCGCTT--C---GT--GTGACTCGTAGACCGTAAG---CTT-ACGACTTATGATTTCTCATCCCACAAAAACAAGAAAA-AAAAATA----------------TAT-A-T------A--TATG-----------------------------------------------------------------------------ATAATCCAA-TAC--CGAT--T--CCCGA--TSizeHit CountTotal NormTotal
No Reads
droEle1
ATGTGGAGGTCCAGAACGGCAAGGTCACCGCCTGCTACGACAGCATCAAGGTCAGTATCC-CCTA--------------------------------------AGCAAACAAACGAACTAA-------------------------------------------------------------------------------------------AC-----------------------------------------------TCCTCCAACCGA----------------------------AA-------C--T---C---------CTACCC------------------------------------CCTTCTATTGCTT--C---GT--GTGACTCGTAGTTTGTAAG---CTTTAAGACTTATGATTTCTCATCCCACCAAAAAAA-----------------------------TAT--------GAT--TATG-----------------------------------------------------------------------------ATAAGCAAC-TAC--CGAA--A--CCCCAATTSizeHit CountTotal NormTotal
No Reads
droRho1
ACGTGGAGGTCCAGAACGGCAAGGTCACCGCCTGCTACGACAGCATCAAGGTCAGTATTC-CCCT----------------------------CCCC----CCAGC----AAACGAACTAG-------------------------------------------------------------------------------------------ACTCCCC--------------------AATCT-------------------------------------------------------------------------------------CCCC------------------------------------CCCTCTATTGCTT--C---GT--GTGACTCGTAGAATGTAAG---CTTTAAGATTTATGATTTCTCATCCCACAAAAAAAACCAAA-AAAAA---CAAA------------------------A--TATG-----------------------------------------------------------------------------ATAAGCCAA-TAC--CGAA--T--CCCCAATTSizeHit CountTotal NormTotal
No Reads
droBia1
ACGTGGAGGTCCAGAACGGCAAGGTCACCGCCTGCTACGACAGCATCAAGGTCAGTACCC-CAG----------------------------------------------AATCGAACCAG-------------------------------------------------------------------------------------------AGC---C--------------------CAC----------------------------------------------------------------------CCAA-----------------------------------------------------CCCCCTATTGCTT--C---GT--GTGACTCGTAGA-CGTAAG---CCT-AGGACTCTTTATTTCTCATCCCACCAAA---------------------------------TAC---TA--------TTCGATA---------------------------------------------------------------------------CGATCCAA-T-C--CGAA--C---CCCG--TSizeHit CountTotal NormTotal
No Reads
droTak1
ACGTGGAGGTCCAGAACGGCAAGGTCACCGCCTGCTACGACAGCATCAAGGTCAGTATC---------------------------------------------------AACCTAACTAG-------------------------------------------------------------------------------------------TACC--C---------------------------AACCACCCACTCAACTCC------CGA----------------------------AT--------------------------CTCC------------------------------------CCCTCTATTGCTT--C---GTGTGTGACTCGTAGACTGTAAG---CTTTAAGACTTATGATTTCTCATCCCAAAAAA---------------------------------AAT-C-T------T--TATG-ATCT-------------------------------------------------------------------------TAAACCAA-TAC--CGAAAAC--CCCCA--TSizeHit CountTotal NormTotal
No Reads
droEug1
ACGTGGAGGTCCAGAACGGCAAGGTCACCGCCTGCTACGACAGCATCAAGGTCAGTATTC-CTTCTAACGAGAAAAACAGAAAATCCCTCTACCCCC--------------------TACG-------------------------------------------------------------------------------------------AA------------------------------------------------------------A---------------TCCTTAAAAAAAAATCCTACC------------------ACCA------------------------------------CCTTCTATTGCTT--C---GT--GTGACTTGTAGACCGTAAG---CTTTAAGTCTTATAATTTTTCATCCCACAAAAAAA------------------------------------GAAAGA---------AA-----------------------------------------------------------------------------------------CGA-------------ASizeHit CountTotal NormTotal
No Reads
dm3
ACGTGGAGGTCCAGAACGGCAAGGTCACCGCCTGCTACGACAGCATCAAGGTCAGTACTC-CCAT----------------------------ACCC----T-TGTTA--AACCGAACTAG-------------------------------------------------------------------------------------------AAACACC--------------------TACCCTCAAC-------------------------------------------------------------C--------------ACCAACTC------------------------------------CCCTCTATTGCTT--C---GT--GTGACTCGTAGACCGTAAG---CTTTAAGTCT--TGATTTCTCATCCCACAAAAAAAAAGAAAAAATAA--AATAAACAAGAAATA---ATAT-------ACATA--------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................ACC--------------------TACCCTCAAC-------------------------------------------------------------C--------------ACCAAC.....................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GTCCAGAACGGCAAGGTCACCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GTCCAGAACGGCAAGGTCACCGCCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....GAGGTCCAGAACGGCAAGGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CGTGGAGGTCCAGAACGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.CGTGGAGGTCCAGAACGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CGGCAAGGTCACCGCCTGCTACGACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................T--C---GT--GTGACTCGTAGACCGTAAG---CTT...............................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................T--C---GT--GTGACTCGTAGACCGTAAG---CTC...............................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CGTGGAGGTCCAGAACGGCAAGGTCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................AACACC--------------------TACCCTCAAC-------------------------------------------------------------C--------------ACCAAC.....................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................CTC-CCAT----------------------------ACCC----T-TGTTA--AACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ACGTGGAGGTCCAGAACGGCAAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.........TCCAGAACGGCAAGGTCACCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.....GAGGTCCAGAACGGCAAGGTCACCGCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GGAGGTCCAGAACGGCAAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................TCTATTGCTT--C---GT--GTGAC...................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CAAGGTCACCGCCTGCTACGACAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ACGTGGAGGTCCAGAACGGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................T----------------------------ACCC----T-TGTTA--AACCGAACTAG-------------------------------------------------------------------------------------------AAACACC--------------------.................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......AGGTCCAGAACGGCAAGGTCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................ACCGCCTGCTACGACAGCATCAAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TCACCGCCTGCTACGACAGCATCAAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CAAGGTCACCGCCTGCTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GTCCAGAACGGCAAGGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................AACTC------------------------------------CCCTCTATTGCTT--C---GT--GT......................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TTGCTT--C---GT--GTGACTCGTAGACCGTA.......................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................CACCGCCTGCTACGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................CCCTCTATTGCTT--C---GT--GTGACTCGTAG.............................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........CAGAACGGCAAGGTCACCGCCTGCTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.........TCCAGAACGGCAAGGTCACCGCCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................C---GT--GTGACTCGTAGACCG.........................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ACGTGGAGGTCCAGAACGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TATTGCTT--C---GT--GTGACTCGTAGACCG.........................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................T--TGATTTCTCATCCCACAAAAAAAAAGAA..........................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GAACGGCAAGGTCACCGCCTGCTAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GTGGAGGTCCAGAACGGCAAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GGTCCAGAACGGCAAGGTCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................ATTGCTT--C---GT--GTGACTCGTAGACC..........................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................GGCAAGGTCACCGCCTGCTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TGACTCGTAGACCGTAAG---CTTTAAGT..........................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................ACCGCCTGCTACGACAGCATCAAGGTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................CC--------------------TACCCTCAAC-------------------------------------------------------------C--------------ACCAAC.....................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CGCCTGCTACGACAGCATCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AAGGTCACCGCCTGCTACGACAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GTCCAGAACGGCAAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CGTGGAGGTCCAGAACGGCAAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................TC------------------------------------CCCTCTATTGCTT--C---GT--GTGACTCG................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GTGGAGGTCCAGAACGGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GTCACCGCCTGCTACGACAGCATCAAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......AGGTCCAGAACGGCAAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CACCGCCTGCTACGACAGCATCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CGTGGAGGTCCAGAACGGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GTCACCGCCTGCTACGACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CGCCTGCTACGACAGCATCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAATAA--AATAAACAAGAAATA---AT.............................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GTCACCGCCTGCTACGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GAACGGCAAGGTCACCGCCTGCTACGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CCGCCTGCTACGACAGCATCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................GGCAAGGTCACCGCCTGCTAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TATTGCTT--C---GT--GTGACTCGTAGACCGTA.......................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGAAAAAATAA--AATA.............................................................................................................................................1930.3310000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAAAAAAAAAGAAAAA.......................................................................................................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAGAAAAAATAA--.................................................................................................................................................19130.1520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAGAAAAAATAA--AA...............................................................................................................................................2070.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGAAAAAATAA--AA...............................................................................................................................................17190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ACGTGGAGGTCCAGAACGGCAAGGTCACCGCCTGCTACGACAGCATCAAGGTCAGTACTC-CCAC----------------------------CCCC----A-TGTTA--AACCGTACTAG-------------------------------------------------------------------------------------------AAACACC--------------------TACCCTC--------------------------------------------------------------------AA-----------------------------------------------------CCCTCTATTGCTT--C---GT--GTGACTCGTAGACCGTAAG---CTTTAAGTCT--TGATTTCTCATCCCACAAAAAGAAAAAAA-AATAATAAAAAAATATGAAATA---ATAT-------ACATA--------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............ACGGCAAGGTCACCGCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
......AGGTCCAGAACGGCAAGGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAA-AATAATAAAAA.............................................................................................................................................17200.05100000000000001000
droSec2
ACGTGGAGGTCCAGAACGGCAAGGTCACCGCCTGCTACGACAGCATCAAGGTCAGTACTC-CCAC----------------------------CCCC----A-TGTTA--AACCGTACTAG-------------------------------------------------------------------------------------------AAACACC--------------------TACCCTC--------------------------------------------------------------------AA-----------------------------------------------------CCCTCTATTGCTT--C---GT--GTGACTCGTAGACCGTAAG---CTTTAAGTCT--TGATTTCTCATCCCACAAAAAAAAAAAAATAATAATAAAAAAATAAGAAATA---ATAT-------ACATA--------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..GTGGAGGTCCAGAACGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020011
..GTGGAGGTCCAGAACGGCAAGGTCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
..........CCAGAACGGCAAGGTCACCGCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
.........................CACCGCCTGCTACGACAGCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
.................GGCAAGGTCACCGCCTGCTACGACAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000
..GTGGAGGTCCAGAACGGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
.............GAACGGCAAGGTCACCGCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
ACGTGGAGGTCCAGAACGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100
..........CCAGAACGGCAAGGTCACCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
.......GGTCCAGAACGGCAAGGTCACCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
...............................CTGCTACGACAGCATCAAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
........................TCACCGCCTGCTACGACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000
........GTCCAGAACGGCAAGGTCACCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
droYak3
ACGTGGAGGTCCAGAACGGCAAGGTCACCGCCTGCTACGACAGCATCAAGGTCAGTATCA-CCCCC-------------------------ACCCCCCACAA-TGTTA--AACCGAACTAG-------------------------------------------------------------------------------------------AGCCACCAACCACCAAA---CCGTCTATACCCTC--------------------------------------------------------------------A--------------ACTC------------------------------------CCCTCTATTGCTT--C---GT--GTGACTCGTAGACCGTAAG---CTTTAAGTCT--TGATTTCTCATTCCACCAAAAAAAAAAAA-----------AAATTAGAAATA---ATAT-------ATATT-----T--------------------------------------------------------------------------CAAAGCAA-----------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.CGTGGAGGTCCAGAACGGCAAGGTCACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
.......GGTCCAGAACGGCAAGGTCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................TT--C---GT--GTGACTCGTAGACCGTAAG---CTT...............................................................................................................................................................................................2711.00101000000000
...................................................................................................................................................................................................................................................CTC--------------------------------------------------------------------A--------------ACTC------------------------------------CCCTCTATTGCTT--C---GT--GTGA....................................................................................................................................................................................................................2811.00101000000000
...........CAGAACGGCAAGGTCACCGCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
ACGTGGAGGTCCAGAACGGCAAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.CGTGGAGGTCCAGAACGGCAAGGTCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
..GTGGAGGTCCAGAACGGCAAGGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
droEre2
ACGTGGAAGTCCAGAACGGCAAGGTCACCGCCTGCTACGACAGCATCAAGGTCAGTACTG-CCCCA-----------------------------------A-TGTTA--AACCGAACTAG-------------------------------------------------------------------------------------------AACCACC--------------------AAC-------------------TCCCTT----------------------------------AA-CT---------------------CAACTC------------------------------------TCCTCTATTGCTT--C---GT--GTGACTCGTAGACCGTAAG---CTTTAAGTCT--TGATTTCTCATCCCACCAAAAAAAAAAAAAAA-AA---AAAAAAAAAAAATC---AGAT-------ATATATT-----------------------------------------------------------------------------TCAAACCAA-TAC--CAAA--T--CCCCA--TSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..GTGGAAGTCCAGAACGGCAAGGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000310
..........CCAGAACGGCAAGGTCACCGCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0021000100
........GTCCAGAACGGCAAGGTCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000200
.CGTGGAAGTCCAGAACGGCAAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000200
....GGAAGTCCAGAACGGCAAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0022000000
..........CCAGAACGGCAAGGTCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0021000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAA-AA---AAAAAAAAAA......................................................................................................................................25201.252525000000
......AAGTCCAGAACGGCAAGGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
..GTGGAAGTCCAGAACGGCAAGGTCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
..GTGGAAGTCCAGAACGGCAAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCACCAAAAAAAAAAAAAAA-AA---AAAAAAAAAAAAA...................................................................................................................................3611.0010010000
.................GGCAAGGTCACCGCCTGCTACGACAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000
..........CCAGAACGGCAAGGTCACCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
............................CGCCTGCTACGACAGCATCAAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
.................GGCAAGGTCACCGCCTGCTACGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000
....GGAAGTCCAGAACGGCAAGGTCACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAA-AA---AAAAAAAAAAA.....................................................................................................................................26200.951919000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAAAAAAAAAAAAAAA-AA---AAA.............................................................................................................................................2460.1711000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAA-AA---AAAAAAAAAAAA....................................................................................................................................21200.1020200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA-AA---AAAAAAAAAAAA....................................................................................................................................29200.0510100000

Generated: 05/19/2015 at 01:40 PM