dvi_563

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ACCGATTAAGTTCATTAGTTTATTTTAAGATACCGTTCAATTAAGGCAACTCTAGTCTACATATTTCGCAAACACTCACAAACACGCTCACACACACGCGACACAACAGCAAATAACCAGATTACAATTGCTTTAATGTCTTCCAAACATACATGTTCATTCATGCATATCCTTGAAAACATGTCAACTGCTGCGACACAGCGAGCTACAACACAGTTTCCTTTGGAAGCGCCAACAACAAACGCAGCATT ****************************************************************************************************************************...........(((..........(((((((..((((..........)))))))))))..........)))****************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V116 male body	M027 male body	M028 head	SRR060676 9xArg_ovaries_total	SRR060666 160_males_carcasses_total
..........................................................................................................................................................................................ACTGATGCGACTTAGCGAGCT............................................	21	3	1	2.00	2	1	1	0	0	0
..............................................................................................................................ATTGCTTTAATGTCTTCC...........................................................................................................	18	0	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................ACACAGCGAGCTACAACACAGT..................................	22	0	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................TCCTTGAAAACATGTCAACTGCTGCGAC......................................................	28	0	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................GATATTATTGAAAACATGTCAA................................................................	22	3	8	0.13	1	0	0	0	0	1

TGGCTAATTCAAGTAATCAAATAAAATTCTATGGCAAGTTAATTCCGTTGAGATCAGATGTATAAAGCGTTTGTGAGTGTTTGTGCGAGTGTGTGTGCGCTGTGTTGTCGTTTATTGGTCTAATGTTAACGAAATTACAGAAGGTTTGTATGTACAAGTAAGTACGTATAGGAACTTTTGTACAGTTGACGACGCTGTGTCGCTCGATGTTGTGTCAAAGGAAACCTTCGCGGTTGTTGTTTGCGTCGTAA ****************************************************...........(((..........(((((((..((((..........)))))))))))..........)))****************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060684 140x9_0-2h_embryos_total	SRR060669 160x9_females_carcasses_total	SRR060671 9x160_males_carcasses_total	V116 male body	V053 head	M047 female body	GSM1528803 follicle cells	SRR1106729 mixed whole adult body	SRR060662 9x160_0-2h_embryos_total	SRR060663 160_0-2h_embryos_total	SRR060665 9_females_carcasses_total	SRR060667 160_females_carcasses_total	SRR060687 9_0-2h_embryos_total	V047 embryo
.............................................................................................................................................................................................................GATGTGGTCTCAAAGGAGAC..........................	20	3	2	1.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0
.....................TAAAATTCTATGGCAAGTTAA.................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................GATGTGGTCTCAAAGGAGA...........................	19	3	12	0.50	6	0	0	0	0	1	0	0	0	1	1	1	1	1	0
.............................................................................................................................................................................................................GAGGTTGTCTCAAAGGAGAC..........................	20	3	4	0.25	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TACAGCAGGTTCGTATGT..................................................................................................	18	2	15	0.13	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0
................TCAAAGAAAGTTCTATGGCAC......................................................................................................................................................................................................................	21	3	9	0.11	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................CGATGTGGTCTCAAAGGAG............................	19	3	10	0.10	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TGGATGTGGTCTCAAAGGA.............................	19	3	11	0.09	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................TTTGGCTATTGTTAACGAAAT....................................................................................................................	21	3	14	0.07	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................TTTTTGTGCGAGTGTGTGT...........................................................................................................................................................	19	1	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................GAGGTTGTCTCAAAGGAGA...........................	19	3	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................................................................................................GCGCTGTGTTGTCATATA.........................................................................................................................................	18	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_10322:226177-226427 +	dvi_563	ACCG---------------ATTAAGTTCATT---AGTTTATTTTAAGATACCGTTCAA-------------TTAAGGCAACTCTAGTCTACATATTTCGCAAACACTCACA------------------------------------AA----CACGC---TCACA-------------C--ACA----CGC------G--------------------ACACAACA---GCAAATAAC-------------------------------------------CAGATTAC-----------------------------------------------AATTGCTTTAATGTCTTCCAAA-CATACATG--TTCATT------------------------------------------------------CATGCATATCCTTGAAAACATGT--------C-------AACTGCTGC-----------------------------------------------------------------------GACACAG-------------------------------------CGAGCTA---------------------------------------------------------------------------------------CAACACAGTTTCCTTTGGAAGCGCCAAC---------------------------------A--------AC------------------AAACGC--AGCATT--
droMoj3	scaffold_6680:2274080-2274277 +		CAAT---------------TAA-----------------------------------------------------AATGACT---------------------------------CGCACAC------------ACACACACACA--CA----C-------ACACA-------------T--ACA----CTC------TCTCTCACTCAC----ACAACCTGGCAC------------------A--CATAGATA----TGA---------------------------------------------------------------------------AATTGCTTAAATCTCTTCTGAAACAT------------------ACT----------------------------------------------CACGCATATCCTTGCAAACA-----------------------------------------------------------------------------TTT-------AT---CAATTGTGACGCAG--------------------------------CGCTACTCAATACT--------------------------------------------------------------------------------------------GTTGCCTC----------G-------------------------------ACAA-GCG---CC--AAC---------------AAACGC--AGCATT--
droGri2	scaffold_14853:3941851-3942153 -		CGAT---------------TAA--TTTCATTTCTTGCTTACTTTAAGCACTC----ATTTAAGTTGAGTTA-TTTGCCAG-----------------------CTCAGACACGCACATATATACAC--------ACA--------------CAC------------ACACACACACA--CACA-------------C---------ACACAAAC-----ACACAGAG---ACA------------------------------AAC--------ACACAGAGTAAACATT----------------------------------------------------CAATGTCGTCCTCC-AA-CGTCCGCATCGTTGCCGGAAGTGGCGATGATAACACGCCAAAGA----G----GAAATGAACACTTTTTGGG----CATTGGCA---CGATGC--------G----AGG----------------CTACTAAAAATATGCGCGTA-------CTC-TTACGTA------------------------------T-----------------------------------------------AG---C------------AGT---------------------------------------------------------------GGCAG------------------CAGCAGC---------------------------------A--------GC------------------AGTAGC--AGCAGC--
droWil2	scf2_1100000004909:11734270-11734407 +		ACAA---------------AAAAA-AAAATT---GATAAATT-----------------------------------------------------------------ATAATACATATT-ATATGTAT------GTG--------------AAT------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATACA----TATGTGTG---CAATGC--------A----AAA----------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCAATTGCAAGCTCAAAGCTATCAACAACAATTACAA------------------TTACAAC---------------------------------A--------AC------------------AGCAGC--AGCATC--
dp5	2:1817255-1817446 +		CAGA---------------CACAC----------------------------------------------------------------------------------------------------------------A----------CA----CA---CAC-----A----CAC--ACAC--A------CAC--AAC----------------------ATCCCGCC---TCACCTCAC-------------------------------------------CGGCT---CTTTCTGTT-----------------------------------------TACTTTCTTTTCTGTATAC-TGTATATA--ATGCTCTGTA----C--------------AAAATCAAATCAACC----AA-------------------------------AT--------C-------AACCCCTCC-----------------------------------------------------------------------GCCCGCCCGTCCAAATGTAGAGCTTCAGTTCGAAGGCGGCGCTGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------G--------GC------------------CATGTT--CGCATA--
droPer2	scaffold_48:496139-496342 -		ACTC---------------CACTC-T-------------------------------A-------------------------------------------------------CACCCC--CACGATGAT----GCA----------CA----CA---CAC-----A------------C--A--CACATCTACTCTAA---GCACA---------------------------------------------------------------------------TAGCCAGC-----------------------------------------------GATTATTTCTATATCTTGCCAA-CCTTT-----------------------------------------TTCT--------------------CTCCTATATCTTTCAAGACAGGCATAAAGGATC--------------------------------------------------------------------------------------------------------------TCAATACGGATGCGTTCCTGCGC-----GGTCGCAACTTCTA------------------------------------------------------------------------T------------------------------------------TTTCATCAAAG--CTGTG-CCAATG--TC------------------ATGAGC--AGCTAT--
droAna3	scaffold_12943:4167377-4167565 -		GCAC----------------------------------------------------------------------------------------------------------------------------------ACACACACACACACA----C----------------------A--CACACA----CAC------A------------TAG--ACGGAGAGACG---ACA------GACACACAC--GCATG----AGAAAAAGCCAAC-AACTCTAAGCGGCT---GTT-CTA--AATACACGTTGTT---------------------------------------------------G--CA--A----------ATGC--------------AAAAAGGAACCAACA----AAA-------------------------------C--------------------------------AAAGCGA---AAAAT---------GCTTTTAA------GC-TTG-----------------------------------------------------------------------------C------------AGC---------------------------------------------------------------AGCAG------------------CAGCAGC---------------------------------A--------GC------------------AGCAGC--AGCA----
droBip1	scf7180000395155:278177-278387 -		CACG---------------CTCAC-A-------------------------------C------------------------------------------------------AC----------------------------------------------------------------------C----ACC---AA----------------------CATCAGCTACA---------GCAACACCA--GCAAC----AGAAACC--------ACAACAAGCTGCATTC-----------------------------------------------ATATGCTTTAAAGTCTTACTA-------------------------------------------------------------------------------------------------------------------------------------TATCAAC-------ACGCATTTTC-CATCCTCA-ACCAAACA-----------------------------------------------------------CAAACACCC---------------------AACTCATCAGCCACCACCAGCAGCATTAGCAGCAGTCTC---------------------------------------------------------------------------C----GA-AGAA-AAG---CA--GACATCGTATCTGCCGCTAAATGC--AGTATT--
droKik1	scf7180000302679:1114768-1114924 +		ACAC----------------------------------------------------------------------------------------------------------------------------------ACA----------CA----CA---CAC-----A----CAC--ACAC----------ACACCACAA---ACACA-------------------C-------------------ACACAAACAGTTGATGATC--TGAACCT------------------------------------------------------------------AGTTT-----------TAATCA--------A----------AAG-------------------------------------------------------CCAACAA-----AA--------CAACCGCT----------------TAACCAA---AACAGGCTCGCCACGCTTTGGCTCCTCGCC-GGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCAGC---------------------------------A--------GC------------------AGCAGC--AACAAC--
droFic1	scf7180000454017:247256-247450 -		CAAA---------------CGCCC-A-------------------------------T------------------------------------------------------AA-ACAA--TTCATCAGAAAGCGAG----------CA----AA---CAA-----A------------C------------------------------------GAAAGCGAATA---ACATA------------------------------T---------------ATTGTTTA-----------------------------------------------------------------------------CA--ATTGCCTAAAAGGGC--------------AGGAGACAAC----CAAATAAAATAGTTTTGCA----AATTCATG---CCATGA--------C----AAG----------------TGGCTAAAACAATAAGCACAAAACGTTTTAAAACTCTTTCGAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAAAC---------------------------------A--------AT--------------------GAAC--GGCAGC--
droEle1	scf7180000491249:2976384-2976591 -		CACG---------------CACAC-A-------------------------------C------------------------------------------------------AA----------------------------------------------------------------------A----AAT------A----------------------ACAACAACA---------GCAAAA-----GCAGC----AGCAACC--------ACAACAAGCAGCAATT-----------------------------------------------ATAAGCTTTAATGTCTTACTA-------------------------------------------------------------------------------------------------------------------------------------AAACAACAAACTTCACGCATTTTACCCTCTTAA-AAAATATAAAAA--AAAAAACACAAA-A-------------------------------------CATCAAAATGC---------------------AACACAACAGCC------------------------------------------------------------------AC----------A--------GCGAACAGCCAAAGTC----GA-GGAA-AAG---CT--GGC---------------AAATGC--AGTATT--
droRho1	scf7180000778060:38428-38616 -		AACA---------------TT--------------------------------------------------------------------------------------AAAATACATACTTAGACAGCTTT----ACA----------CA----CA---CAC-----A------------C--A--CACACATATCAC---------A----------------------------------------TACAAACACTTGATAATC--TGAAC-T------------------------------------------------------------------AGTTT-----------TAATCA--------A----------AGCC--------------AAACGAAAACCAACC----AAA------------------------------------------ACCGCT----------------TAACCAA---AACAGGCTCGCCACGCTTTGGCTCCTCACC-GGGC-----------------------------------------------------------------------AG---------------------------------------------------------------------------------------------------------CAGCAAC---------------------------------AACA---CT--GAT----------------AGCTC--AGCTGC--
droBia1	scf7180000302428:9207574-9207715 +		CAAC---------------CACAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAGCAGCAATC-----------------------------------------------ATAAGCTTTAATGTCTTACTA-------------------------------------------------------------------------------------------------------------------------------------AAACAACAAACTCCACGCACTTTACCCTCTTAA-AAAATACA-----------------------------------------------------------ACAAAATACG--------------------AAAACAACAGCC---------------------------------------------------------------------------------------------AGCCAAAGTC----GA-GGAA-AAG---CT--GGC---------------AAATGC--AGTATT--
droTak1	scf7180000415857:189806-190004 +		CAATCCCAAACCATTCACGCACAC-A---------------------------------------------------------------------------------------------------------------------------------------------------------C--------------CAA----------------------AAACAACAACA---------GCCACAGCA--GCAGC----AGCAACC--------ACAACAAGCAGCAATC-----------------------------------------------ATAAGCTTTAATGTCTTACTA-------------------------------------------------------------------------------------------------------------------------------------AAACAACAAAATCCACGCATTTTACCCTCTTAA-AAAATACAAAAA--------------------------------------------------------CAAAATAC---------------------AAAACAACAGCC---------------------------------------------------------------------------------------------AGCCAAAGTC----GA-GGAA-AAG---CT--GGC---------------AAATGC--AGTATT--
droEug1	scf7180000409548:868812-868971 -		GGCA---------------A-----------------------------------------------------------------------------------CATCAATACACATACATATACAC--------TCA--------------CAC------------ACTTACACACA--C----------------------ACACACAC----ACTAGTTGCAACA---ACAAACAAC-------------------------------------------GA----------------------------CATTGCCAATGCTCGTAAAAATGCA------------------------------------------------------------------------------------------------------------------------------------AAATGAAGC---------------------------------------------------------------------------------------------------------------------------AGCAGCAACAGCAA------------------------------------------------------------------------CAG------------------------------------------CAACA----GC-AACA-GCA---AC--AAC---------------ATCTAG--AGCATG--
dm3	chrX:5048825-5049040 -		ATAG---------------CGTCC-A-------------------------------G-------------TAGCAACAACT------TGCATACAATGCCAGCATCAACA------------------------------------CA----CACAC---ACACA-------------C--ACA----CTC------A---ACACACAC----ACAACAAGCAACA---ACACA------------------------------C----------------GA----------------------------CATTGGCAATGCTCGTAAAAATGCA------------------------------------------------------------------------------------------------------------------------------------AAATGAAGCAGCACAC----------------------------------------------------AGCAACAACACCGT--------------------------------------CTAGAGC-----ATGAGCAACACCAATAGTAAC---------------------------------------------------------------AAC---------------------------------------AGCACTATTA----GC-AGTA-GCAACA--GC------------------AGTCAC--AACAAC--
droSim2	3l:2339076-2339230 +		ACAG---------------CA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACC--------ACAACAAGCAGCAATC-----------------------------------------------ATAAGCTTTAATGTCTCACTA-------------------------------------------------------------------------------------------------------------------------------------AA-------ACTCCACGCATTTTACCCTCCTAA-AAAAT-------GA---CAACAACAAAAAAA--------------------------------CACATCAAAATGCT-----------------------AC-------------------------------------------------------------------------------------A--------GCAGACAGCCAAAGTC----GA-GGAA-AAG---CT--GGC---------------AAATGC--AGTATT--
droSec2	scaffold_21:296947-297048 +		CTCC---------------CATGT-C-------------------------------T------------------------------------------------------CC----------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAATT---ATT-GTT--TATGTATATT-TT---------------------------------------------------G--CA--A---------------------------------------------------------------------------------------------------------------------------------------------------TTGCTC-AG----------ATCAACGGCAGCGGAGTTG--------------------------------------------------C------------AAC---------------------------------------------------------------TGCAGCA----------------CCGCAGC---------------------------------A--------AC------------------AGTTGC--AGCAGT--
droYak3	2L:11911377-11911609 +		AACA---------------TT--------------------------------------------------------------------------------------AAACTACATACCTAGACAGCTTT----ACA----------CACACTC------------A------------C--A------CAT--AAC----------------------ACACAACCACA---------CACA----CACACACAGTTGATGACC--TGAAC-T------------------------------------------------------------------AGTTT-----------TAATCA--------A----------AGCC---------------AAACGAATCCAACC----AAA------------------------------------------ACCGCT----------------TAACCAA---AACAGGCTCGCCACGCTTTGGCTCCTCACC-GGGC-----------------------------------------------------------------------AGCAGCAACAA-----------CACT-------------------------------------------------------------------GATAGTTC----------A--GCTGCCGCCGGCAACCAG----------CAGCA-CCAACA--GC------------------AGCAGC--AGCAG---
droEre2	scaffold_4820:1182778-1182945 -		CGGA---------------AACGC----------------------------------------------------------------------------------TAAAA------------------------------------CG----CGCGC---ACTCA-------------C--TCA----CAC------A--------------------AAACCAC----GCAA---------------------GTTGCAAAAT--TGAA----------------------------------------------------------------------AATTTATCGTCT---AGAACAC------------------ACG----------------------------------------------CACAC----------------------TAAACCGCAACA----------------TGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCGGGCGCTAACAAGAAATTGTCAGCAACAAATTCAG------------------C--CGGC---------------------------------A--------ACGGC---------------AACTGCACAGTAGTAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

ACCG---------------ATTAAGTTCATT---AGTTTATTTTAAGATACCGTTCAA-------------TTAAGGCAACTCTAGTCTACATATTTCGCAAACACTCACA------------------------------------AA----CACGC---TCACA-------------C--ACA----CGC------G--------------------ACACAACA---GCAAATAAC-------------------------------------------CAGATTAC-----------------------------------------------AATTGCTTTAATGTCTTCCAAA-CATACATG--TTCATT------------------------------------------------------CATGCATATCCTTGAAAACATGT--------C-------AACTGCTGC-----------------------------------------------------------------------GACACAG-------------------------------------CGAGCTA---------------------------------------------------------------------------------------CAACACAGTTTCCTTTGGAAGCGCCAAC---------------------------------A--------AC------------------AAACGC--AGCATT--	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..................................................................................................................................................................................................................................................................................................................................................ATTGCTTTAATGTCTTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAG-------------------------------------CGAGCTA---------------------------------------------------------------------------------------CAACACAGT.................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGAAAACATGT--------C-------AACTGCTGC-----------------------------------------------------------------------GAC.................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CAAT---------------TAA-----------------------------------------------------AATGACT---------------------------------CGCACAC------------ACACACACACA--CA----C-------ACACA-------------T--ACA----CTC------TCTCTCACTCAC----ACAACCTGGCAC------------------A--CATAGATA----TGA---------------------------------------------------------------------------AATTGCTTAAATCTCTTCTGAAACAT------------------ACT----------------------------------------------CACGCATATCCTTGCAAACA-----------------------------------------------------------------------------TTT-------AT---CAATTGTGACGCAG--------------------------------CGCTACTCAATACT--------------------------------------------------------------------------------------------GTTGCCTC----------G-------------------------------ACAA-GCG---CC--AAC---------------AAACGC--AGCATT--	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGACGCAG--------------------------------CGCTACT......................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
...............................................................................ACT---------------------------------CGCACAC------------ACACACACACA--CA----................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	2	0

droGri2

CGAT---------------TAA--TTTCATTTCTTGCTTACTTTAAGCACTC----ATTTAAGTTGAGTTA-TTTGCCAG-----------------------CTCAGACACGCACATATATACAC--------ACA--------------CAC------------ACACACACACA--CACA-------------C---------ACACAAAC-----ACACAGAG---ACA------------------------------AAC--------ACACAGAGTAAACATT----------------------------------------------------CAATGTCGTCCTCC-AA-CGTCCGCATCGTTGCCGGAAGTGGCGATGATAACACGCCAAAGA----G----GAAATGAACACTTTTTGGG----CATTGGCA---CGATGC--------G----AGG----------------CTACTAAAAATATGCGCGTA-------CTC-TTACGTA------------------------------T-----------------------------------------------AG---C------------AGT---------------------------------------------------------------GGCAG------------------CAGCAGC---------------------------------A--------GC------------------AGTAGC--AGCAGC--	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..............................................................................................................................................................................ACA--CACA-------------C---------ACACAAAC-----ACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0

droWil2

ACAA---------------AAAAA-AAAATT---GATAAATT-----------------------------------------------------------------ATAATACATATT-ATATGTAT------GTG--------------AAT------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATACA----TATGTGTG---CAATGC--------A----AAA----------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCAATTGCAAGCTCAAAGCTATCAACAACAATTACAA------------------TTACAAC---------------------------------A--------AC------------------AGCAGC--AGCATC--	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

dp5

CAGA---------------CACAC----------------------------------------------------------------------------------------------------------------A----------CA----CA---CAC-----A----CAC--ACAC--A------CAC--AAC----------------------ATCCCGCC---TCACCTCAC-------------------------------------------CGGCT---CTTTCTGTT-----------------------------------------TACTTTCTTTTCTGTATAC-TGTATATA--ATGCTCTGTA----C--------------AAAATCAAATCAACC----AA-------------------------------AT--------C-------AACCCCTCC-----------------------------------------------------------------------GCCCGCCCGTCCAAATGTAGAGCTTCAGTTCGAAGGCGGCGCTGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------G--------GC------------------CATGTT--CGCATA--	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................................................................ATAC-TGTATATA--ATGCTCTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	5.00	5	0	1	0	0	0	0	0	0	4	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTAGAGCTTCAGTT......................................................................................................................................................................................................................	21	1	4.00	4	0	1	0	0	0	0	0	0	3	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTAGAGCTTCAGTTCGAAGGCGG.............................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	2	0
..................................................................................................................................................................................AC--A------CAC--AAC----------------------ATCCCGCC---TCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................TAC-TGTATATA--ATGCTCTGTA----.........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................TT-----------------------------------------TACTTTCTTTTCTGTATAC-.................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	2	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCCAAATGTAGAGCTTCAG........................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................CC----AA-------------------------------AT--------C-------AACCCCTCC-----------------------------------------------------------------------GCCCG...............................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................CTGTATAC-TGTATATA--ATGC...................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGAGCTTCAGTTCGAAGGCGGC............................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------------------------AT--------C-------AACCCCTCC-----------------------------------------------------------------------GCCCGCCC............................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................CGCC---TCACCTCAC-------------------------------------------CGGCT---CTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAATCAACC----AA-------------------------------AT--------C-------AACCCCT.............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................T-----------------------------------------TACTTTCTTTTCTGTATAC-T................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGGCGGCGCTGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------G--------GC------------------................	20	2	1.00	2	0	1	0	0	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................ACTTTCTTTTCTGTATAC-TG...............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................CAAATCAACC----AA-------------------------------AT--------C-------AACCCC..............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------AACCCCTCC-----------------------------------------------------------------------GCCCGCCCGTC.........................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................TCTGTATAC-TGTATATA--ATGC...................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTAGAGCTTCAGTTCGAA..................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCCGTCCAAATGTAGAGCT............................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGCTTCAGTTCGAAGGC...............................................................................................................................................................................................................	21	2	1.00	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AAC----------------------ATCCCGCC---TCACCTCAC-------------------------------------------C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTCAGTTCGAAGGCGGCG...........................................................................................................................................................................................................	21	2	1.00	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TATATA--ATGCTCTGTA----C--------------AAAA......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................AC--ACAC--A------CAC--AAC----------------------ATCCCGCC---...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................CAC--AAC----------------------ATCCCGCC---TCACCTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................CAC--ACAC--A------CAC--AAC----------------------ATCCCGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................CTCAC-------------------------------------------CGGCT---CTTTCTGTT-----------------------------------------TA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................T-----------------------------------------TACTTTCTTTTCTGTATAC-C................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TCCCGCC---TCACCTCAC-------------------------------------------CGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................AACC----AA-------------------------------AT--------C-------AACCCCTCC-----------------------------------------------------------------------GCCGA...............................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TATAC-TGTATATA--ATGCTCT................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------C-------AACCCCTCC-----------------------------------------------------------------------GCCCGCCCGT..........................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--------C-------AACCCCTCC-----------------------------------------------------------------------GCCCGC..............................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCGAAGGCGGCGCTGCA......................................................................................................................................................................................................	20	2	1.00	2	0	1	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TATAC-TGTATATA--ATGCTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TGTATAC-TGTATATA--ATGCTC.................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................................................TCCCGCC---TCACCTCAC-------------------------------------------CGGCT---.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................CAACC----AA-------------------------------AT--------C-------AACCCCTCC-----------------------------------------------------------------------GC..................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................CTTTCTTTTCTGTATAC-TGTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGTTCGAAGGCGGCGCTT........................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGCGGCGCTGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------G--------G...................................	18	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGGCGCTGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------G--------GC------------------A...............	18	2	0.50	1	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGTTCGAAGGCGGCGC..........................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGTTCGAAGGCGGCGCT.........................................................................................................................................................................................................	20	2	0.50	1	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCGAAGGCGGCGCTGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------.............................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGCTTCAGTTCGAAGG................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTCAGTTCGAAGGCGG.............................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGGCGGCGCTGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------G--------GC------------------................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGCTTCAGTTCGAAGGCGGCG...........................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................C-----A----CAC--ACAC--A------CAC--AAC----------------------AT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	19	0.05	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTAGAGCTTCAGTTTCC...................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0

droPer2

ACTC---------------CACTC-T-------------------------------A-------------------------------------------------------CACCCC--CACGATGAT----GCA----------CA----CA---CAC-----A------------C--A--CACATCTACTCTAA---GCACA---------------------------------------------------------------------------TAGCCAGC-----------------------------------------------GATTATTTCTATATCTTGCCAA-CCTTT-----------------------------------------TTCT--------------------CTCCTATATCTTTCAAGACAGGCATAAAGGATC--------------------------------------------------------------------------------------------------------------TCAATACGGATGCGTTCCTGCGC-----GGTCGCAACTTCTA------------------------------------------------------------------------T------------------------------------------TTTCATCAAAG--CTGTG-CCAATG--TC------------------ATGAGC--AGCTAT--	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTA------------------------------------------------------------------------T------------------------------------------TTTCATCAAAG--CTGT..............................................	19	1	2.00	2	2	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTA------------------------------------------------------------------------T------------------------------------------TTTCATCAAAG--CTGG..............................................	19	1	1.00	1	1	0	0	0	0	0

droAna3

GCAC----------------------------------------------------------------------------------------------------------------------------------ACACACACACACACA----C----------------------A--CACACA----CAC------A------------TAG--ACGGAGAGACG---ACA------GACACACAC--GCATG----AGAAAAAGCCAAC-AACTCTAAGCGGCT---GTT-CTA--AATACACGTTGTT---------------------------------------------------G--CA--A----------ATGC--------------AAAAAGGAACCAACA----AAA-------------------------------C--------------------------------AAAGCGA---AAAAT---------GCTTTTAA------GC-TTG-----------------------------------------------------------------------------C------------AGC---------------------------------------------------------------AGCAG------------------CAGCAGC---------------------------------A--------GC------------------AGCAGC--AGCA----	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------------------------------------------------AGCAG------------------CAGCAGC---------------------------------A--------GC------------------AGCAGC--........	22	20	0.10	2	0	2	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-----------------------------------------------------------------------------C------------AGC---------------------------------------------------------------AGCAG------------------CAGCAGC---------------------------------A--------GC------------------AGCAGC--........	27	14	0.07	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG------------------CAGCAGC---------------------------------A--------GC------------------AGCAGC--AG......	22	20	0.05	1	1	0	0	0	0	0

droBip1

CACG---------------CTCAC-A-------------------------------C------------------------------------------------------AC----------------------------------------------------------------------C----ACC---AA----------------------CATCAGCTACA---------GCAACACCA--GCAAC----AGAAACC--------ACAACAAGCTGCATTC-----------------------------------------------ATATGCTTTAAAGTCTTACTA-------------------------------------------------------------------------------------------------------------------------------------TATCAAC-------ACGCATTTTC-CATCCTCA-ACCAAACA-----------------------------------------------------------CAAACACCC---------------------AACTCATCAGCCACCACCAGCAGCATTAGCAGCAGTCTC---------------------------------------------------------------------------C----GA-AGAA-AAG---CA--GACATCGTATCTGCCGCTAAATGC--AGTATT--	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ACAC----------------------------------------------------------------------------------------------------------------------------------ACA----------CA----CA---CAC-----A----CAC--ACAC----------ACACCACAA---ACACA-------------------C-------------------ACACAAACAGTTGATGATC--TGAACCT------------------------------------------------------------------AGTTT-----------TAATCA--------A----------AAG-------------------------------------------------------CCAACAA-----AA--------CAACCGCT----------------TAACCAA---AACAGGCTCGCCACGCTTTGGCTCCTCGCC-GGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCAGC---------------------------------A--------GC------------------AGCAGC--AACAAC--	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAAA---------------CGCCC-A-------------------------------T------------------------------------------------------AA-ACAA--TTCATCAGAAAGCGAG----------CA----AA---CAA-----A------------C------------------------------------GAAAGCGAATA---ACATA------------------------------T---------------ATTGTTTA-----------------------------------------------------------------------------CA--ATTGCCTAAAAGGGC--------------AGGAGACAAC----CAAATAAAATAGTTTTGCA----AATTCATG---CCATGA--------C----AAG----------------TGGCTAAAACAATAAGCACAAAACGTTTTAAAACTCTTTCGAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAAAC---------------------------------A--------AT--------------------GAAC--GGCAGC--	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CACG---------------CACAC-A-------------------------------C------------------------------------------------------AA----------------------------------------------------------------------A----AAT------A----------------------ACAACAACA---------GCAAAA-----GCAGC----AGCAACC--------ACAACAAGCAGCAATT-----------------------------------------------ATAAGCTTTAATGTCTTACTA-------------------------------------------------------------------------------------------------------------------------------------AAACAACAAACTTCACGCATTTTACCCTCTTAA-AAAATATAAAAA--AAAAAACACAAA-A-------------------------------------CATCAAAATGC---------------------AACACAACAGCC------------------------------------------------------------------AC----------A--------GCGAACAGCCAAAGTC----GA-GGAA-AAG---CT--GGC---------------AAATGC--AGTATT--	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AACA---------------TT--------------------------------------------------------------------------------------AAAATACATACTTAGACAGCTTT----ACA----------CA----CA---CAC-----A------------C--A--CACACATATCAC---------A----------------------------------------TACAAACACTTGATAATC--TGAAC-T------------------------------------------------------------------AGTTT-----------TAATCA--------A----------AGCC--------------AAACGAAAACCAACC----AAA------------------------------------------ACCGCT----------------TAACCAA---AACAGGCTCGCCACGCTTTGGCTCCTCACC-GGGC-----------------------------------------------------------------------AG---------------------------------------------------------------------------------------------------------CAGCAAC---------------------------------AACA---CT--GAT----------------AGCTC--AGCTGC--	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CAAC---------------CACAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAGCAGCAATC-----------------------------------------------ATAAGCTTTAATGTCTTACTA-------------------------------------------------------------------------------------------------------------------------------------AAACAACAAACTCCACGCACTTTACCCTCTTAA-AAAATACA-----------------------------------------------------------ACAAAATACG--------------------AAAACAACAGCC---------------------------------------------------------------------------------------------AGCCAAAGTC----GA-GGAA-AAG---CT--GGC---------------AAATGC--AGTATT--	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CAATCCCAAACCATTCACGCACAC-A---------------------------------------------------------------------------------------------------------------------------------------------------------C--------------CAA----------------------AAACAACAACA---------GCCACAGCA--GCAGC----AGCAACC--------ACAACAAGCAGCAATC-----------------------------------------------ATAAGCTTTAATGTCTTACTA-------------------------------------------------------------------------------------------------------------------------------------AAACAACAAAATCCACGCATTTTACCCTCTTAA-AAAATACAAAAA--------------------------------------------------------CAAAATAC---------------------AAAACAACAGCC---------------------------------------------------------------------------------------------AGCCAAAGTC----GA-GGAA-AAG---CT--GGC---------------AAATGC--AGTATT--	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GGCA---------------A-----------------------------------------------------------------------------------CATCAATACACATACATATACAC--------TCA--------------CAC------------ACTTACACACA--C----------------------ACACACAC----ACTAGTTGCAACA---ACAAACAAC-------------------------------------------GA----------------------------CATTGCCAATGCTCGTAAAAATGCA------------------------------------------------------------------------------------------------------------------------------------AAATGAAGC---------------------------------------------------------------------------------------------------------------------------AGCAGCAACAGCAA------------------------------------------------------------------------CAG------------------------------------------CAACA----GC-AACA-GCA---AC--AAC---------------ATCTAG--AGCATG--	Size	Hit Count	Total Norm	Total
No Reads

dm3

ATAG---------------CGTCC-A-------------------------------G-------------TAGCAACAACT------TGCATACAATGCCAGCATCAACA------------------------------------CA----CACAC---ACACA-------------C--ACA----CTC------A---ACACACAC----ACAACAAGCAACA---ACACA------------------------------C----------------GA----------------------------CATTGGCAATGCTCGTAAAAATGCA------------------------------------------------------------------------------------------------------------------------------------AAATGAAGCAGCACAC----------------------------------------------------AGCAACAACACCGT--------------------------------------CTAGAGC-----ATGAGCAACACCAATAGTAAC---------------------------------------------------------------AAC---------------------------------------AGCACTATTA----GC-AGTA-GCAACA--GC------------------AGTCAC--AACAAC--	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA-GCAACA--GC------------------AGTCAC--A.......	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTAAC---------------------------------------------------------------AAC---------------------------------------AGCACTATTA----G...................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA-GCAACA--GC------------------AGTCAC--AACA....	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................ACA-------------C--ACA----CTC------A---ACACACAC----AC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................CAACA------------------------------------CA----CACAC---ACACA-------------C--ACA----CT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................CAACA------------------------------------CA----CACAC---ACACA-------------C--AC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................A----CACAC---ACACA-------------C--ACA----CTC------A---A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ACAG---------------CA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACC--------ACAACAAGCAGCAATC-----------------------------------------------ATAAGCTTTAATGTCTCACTA-------------------------------------------------------------------------------------------------------------------------------------AA-------ACTCCACGCATTTTACCCTCCTAA-AAAAT-------GA---CAACAACAAAAAAA--------------------------------CACATCAAAATGCT-----------------------AC-------------------------------------------------------------------------------------A--------GCAGACAGCCAAAGTC----GA-GGAA-AAG---CT--GGC---------------AAATGC--AGTATT--

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

CTCC---------------CATGT-C-------------------------------T------------------------------------------------------CC----------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAATT---ATT-GTT--TATGTATATT-TT---------------------------------------------------G--CA--A---------------------------------------------------------------------------------------------------------------------------------------------------TTGCTC-AG----------ATCAACGGCAGCGGAGTTG--------------------------------------------------C------------AAC---------------------------------------------------------------TGCAGCA----------------CCGCAGC---------------------------------A--------AC------------------AGTTGC--AGCAGT--	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

AACA---------------TT--------------------------------------------------------------------------------------AAACTACATACCTAGACAGCTTT----ACA----------CACACTC------------A------------C--A------CAT--AAC----------------------ACACAACCACA---------CACA----CACACACAGTTGATGACC--TGAAC-T------------------------------------------------------------------AGTTT-----------TAATCA--------A----------AGCC---------------AAACGAATCCAACC----AAA------------------------------------------ACCGCT----------------TAACCAA---AACAGGCTCGCCACGCTTTGGCTCCTCACC-GGGC-----------------------------------------------------------------------AGCAGCAACAA-----------CACT-------------------------------------------------------------------GATAGTTC----------A--GCTGCCGCCGGCAACCAG----------CAGCA-CCAACA--GC------------------AGCAGC--AGCAG---	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCACC-GGGC-----------------------------------------------------------------------AGCAGCAACAA-----------..........................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................ACACACAGTTGATGACC--TGAAC-T------------------------------------------------------------------AGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGGCTCCTCACC-GGG........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................T--AAC----------------------ACACAACCACA---------CACA----CA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................TCCAACC----AAA------------------------------------------ACCGCT----------------TAACCAA---AACAG.....................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTTC----------A--GCTGCCGCCGGC..................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAA-----------CACT-------------------------------------------------------------------GATAGTT............................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------CACT-------------------------------------------------------------------GATAGTTC----------A--GCTGCC........................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCTCGCCACGCTTTGGCTC..................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------------------------------------------------------GATAGTTC----------A--GCTGCCGCCGGC..................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------CAGCA-CCAACA--GC------------------AGCAGC--AGC.....	23	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................CACAACCACA---------CACA----CACACAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

CGGA---------------AACGC----------------------------------------------------------------------------------TAAAA------------------------------------CG----CGCGC---ACTCA-------------C--TCA----CAC------A--------------------AAACCAC----GCAA---------------------GTTGCAAAAT--TGAA----------------------------------------------------------------------AATTTATCGTCT---AGAACAC------------------ACG----------------------------------------------CACAC----------------------TAAACCGCAACA----------------TGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCGGGCGCTAACAAGAAATTGTCAGCAACAAATTCAG------------------C--CGGC---------------------------------A--------ACGGC---------------AACTGCACAGTAGTAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dvi_563

scaffold_10322:226227-226377 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-7.6	-7.2	-7.1