ID:

dvi_5623

 Coordinate:

scaffold_12875:7268681-7268831 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.9 -27.8 -27.7

Flybase annnotation

CDS [Dvir\GJ21589-cds]; exon [dvir_GLEANR_6935:2]; intron [Dvir\GJ21589-in]

Repeatable elements

NameClassFamilyStrand
Homo6DNAhAT-Pegasus+
mature
  1. scaffold_12822:1471969-1471986 +
  2. scaffold_12855:2672850-2672867 +
  3. dvi_5623  scaffold_12875:7268711-7268728 +
  4. scaffold_12928:432613-432630 +
  5. scaffold_12928:636925-636942 +
  6. scaffold_12928:5274349-5274366 +
  7. scaffold_12928:6813645-6813662 +
  8. scaffold_12932:1110099-1110116 +
  9. scaffold_12963:10689613-10689630 +
  10. scaffold_12963:19834584-19834601 +
  11. scaffold_12970:3984205-3984222 +
  12. scaffold_13042:2129550-2129567 +
  13. scaffold_13042:4496411-4496428 +
  14. scaffold_13042:4965731-4965748 +
  15. scaffold_13047:3252163-3252180 +
  16. scaffold_13047:7496783-7496800 +
  17. scaffold_13047:12482109-12482126 +
  18. scaffold_13049:4010197-4010214 +
  19. scaffold_13049:17415744-17415761 +
  20. scaffold_13246:681199-681216 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTCCGAGCTGCAGCGTCGTCTACAACAGCTCCTAATGCATTTGTAATGCGCTTCGCCTGCACATCCTGTGTGTCTATACGTGTTTGTGTGTGTGCGTGTGTGTATGCATGTGAGTGTGCGTACTTGTGCCTTGTTTATCTTCGTTGTTTATTGTGAACTAACTAACGAGCTGGCTGCTTCCTTCTTCCTTTTAACCAACAGCCAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACGGCGACAAG
**************************************************...(((.(((((((...........(((((....)))))))))))).))).((((((((......))))))))..(((((..((((...((.((((((((...))))).))).)).)))).))).))........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V053
head
 SRR060686
Argx9_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060669
160x9_females_carcasses_total
 M028
head
 SRR060658
140_ovaries_total
 SRR060665
9_females_carcasses_total
 SRR060676
9xArg_ovaries_total
 SRR060679
140x9_testes_total
 SRR060683
160_testes_total
 SRR060684
140x9_0-2h_embryos_total
..............................................................................................................................................................................................................................GCAACAGCAGCAGCAGCAACGGC...... 23 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TAATTCACGAGCTGGCTGCCT........................................................................ 21 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AACAGCAAACAGCAGCAGCAGCAGCA............................. 26 1 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AGCAACAGCAGCAGCAGCA........... 19 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AGCCAACAGCAGCAGCAGC................................. 19 0 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CAGCAGCAGCAACAGCAGCA................. 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TGGTGCCTGGTTCATCTTC............................................................................................................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................AACAGCAGCAGCAGCAGCA............................. 19 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................CAACAGCAGCAGCAGCAGCAGCAACAGC..................... 28 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................GGTACTTGTGCTTTGTTT................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................CAACAGCAGCAGCAGCAGCAGCAACA....................... 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................CAGCAGCAGCAGCAGCAACAGCA.................... 23 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................CAACAGCAGCAGCAGCAAC......... 19 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................TGTTTGTGTGTGTGCGTG......................................................................................................................................................... 18 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.....AGGTGCAGCGTCGTATAT.................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................CAACAGCAGCAGCAGCAGCAGCA.......................... 23 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CAGCAACAGCAGCAGCAGCAA.......... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................................CCAACAGCAGCAGCAGCAGCA............................. 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CAGCAGCAGCAACAGCAGCAG................ 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................................................GCAGCAGCAACAGCAGCAG................ 19 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

AAGGCTCGACGTCGCAGCAGATGTTGTCGAGGATTACGTAAACATTACGCGAAGCGGACGTGTAGGACACACAGATATGCACAAACACACACACGCACACACATACGTACACTCACACGCATGAACACGGAACAAATAGAAGCAACAAATAACACTTGATTGATTGCTCGACCGACGAAGGAAGAAGGAAAATTGGTTGTCGGTTGTCGTCGTCGTCGTCGTCGTTGTCGTCGTCGTCGTTGCCGCTGTTC
**************************************************...(((.(((((((...........(((((....)))))))))))).))).((((((((......))))))))..(((((..((((...((.((((((((...))))).))).)).)))).))).))........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 SRR060679
140x9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
...............................................................................................................................CGGAACCAATGGAAGCAACTA....................................................................................................... 21 3 1 1.00 1 0 1 0 0 0
....................................................................................................................................................................................................................................CGTCGTCGTCATTGCGACTGTTC 23 3 3 0.33 1 1 0 0 0 0
.....................................................................................................................................................................................................................................GGCGTAGTCGTTGCCACTGTTC 22 3 3 0.33 1 1 0 0 0 0
......................................................................................................................................................................................................................................TCGTCGTCATTGCCCCTGTGC 21 3 7 0.29 2 2 0 0 0 0
......................................................................................................................................................................................................................................TCGTCGTCATTGCGACTGTTC 21 3 12 0.25 3 3 0 0 0 0
.....................................................................................................................................................................................................................................GTCGGCGTCGTTGCGACTGTTC 22 3 4 0.25 1 1 0 0 0 0
......................................................................................................................................................................................................................................TCGGCGTCGTTGCGACTGTTC 21 3 12 0.25 3 3 0 0 0 0
......................................................................................................................................................................................................................................TCGTCGTCATTGCGCCTGTTC 21 3 10 0.20 2 2 0 0 0 0
.....................................................................................................................................................................................................................................GTCGTCGTCATTGCGCCTGTTC 22 3 7 0.14 1 1 0 0 0 0
.....................................................................................................................................................................................................................................GCCGTCGTCGTTGCCACTGGTC 22 3 10 0.10 1 1 0 0 0 0
.......................................................................................................................................................................................................................................CGTCGTCGTTGCTGCTGTGC 20 2 14 0.07 1 1 0 0 0 0
.....................................................................................................................................................................................AAGAAGGAACGTTGGTTG.................................................... 18 2 14 0.07 1 0 0 0 1 0
.....................................................................................................................................................................................................................................GTCGTCGACGTTGCGCCTGTTC 22 3 15 0.07 1 1 0 0 0 0
......................................................................................................................................................................................................................................TCGTCGTCGTTGCTACTGTTC 21 2 16 0.06 1 1 0 0 0 0
....................................................................................................................................................................................................................................CTTCGTCGTCGTTGCTACTGTTC 23 3 16 0.06 1 1 0 0 0 0
..........................................................................................................................................AAAGCAACAAATAATACTT.............................................................................................. 19 2 16 0.06 1 0 0 1 0 0
................................................GCGAGGCGGACGTGGAGGGC....................................................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0
.................................................CGAAGCGGATGTGGAGGGC....................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................................................................................CGGCGTCGTTGCGACTGTTC 20 3 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................................................................................CGTCGTCATTGCGACTGTTC 20 3 20 0.05 1 1 0 0 0 0
...........................................................TTGTAGGATCCACAGATA.............................................................................................................................................................................. 18 3 20 0.05 1 0 0 1 0 0
............................................................TGTAGGATCAACAGATATG............................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:7268631-7268881 + dvi_5623 TTCCGAGCT-------------------------------------GCAGCG---TCGTCTACAAC-AGCTCCTAATGCATTTGTA-ATGCGCTTCGCCTGCACATCCTGTGT--------------------------------------------------------------------GTC-------TATACGTGTTTGTGTGTGT-------GCG------------------------TGTG--------------------TGTAT--------------------GCATGTGAGTGTGCGTACTTGTGCCTTGTTTATCTTCGTTGTTT-ATTGTGA-------------------------------------AC-----TAACTAACGAGCTG-GCTG----C--------TTCC--------------------------------------------TTCTTC-CT-------T--T----TAAC-------------------------------------------C---A---ACAGCCAACAGCA---------------GCAGCA------GCAGCAGCA---ACAGC---AGCAGCAGCAACGGCGA------CA-AG
droMoj3 scaffold_6496:26032865-26033084 + TTCCGAGCT-------------------------------------GCAGTA---GCGTCTACAAC-AGCTCCTAATGCATTTGTA-ATGCGCTTCGCCTGCACATCCTGTGTG------T-----------TC----------------------------------------------------------CTCTGTGTGTGTG-------GGTGTGGG--------------------------------------------------------T---GTCTTGTTT-CTCTT----------------------------------CATTGTTT-ATTGCGA-------------------------------------AC-----TAACTAACGAGCTG-ACTG----C--------TTCC--------------------------------------------TTTTCC-CT-------TTTA-ATCCGACA----------------------------------------------A---ACAGCTAACAGCA---------------GCA------ACAGCA---------GCAGC---AACAGCAGCAACGGCGA------CA-AG
droGri2 scaffold_15245:820491-820729 + AGC----------------------------------------------------------------AGTTACTAATGCATTTGTA-ATGCGCTTCGCCTGCACATCCTGTCTA--------------------------------------------------------------------------------------------------AGCTTGTCCTTTTCACTTGTTCTTTCTCTCTCTCTCCCCCGCTCTCCCCCGCTCTTTCTCTGT--------------------CCTTCTCTTTTAG-TCTCGC--------CG--TTTCTTGTTT-ATTGTGA-------------------------------------AC-----TAACTAACGAGCT-----------------------------------------------------------------------TC-CT-----TTTCGT----TA--A----------------------------------------------C---ACAGCGAACAGCA---------------GCAGCAGCAACTGCAGCAGCA---ACAGC---AGCAGCAGCAACGGCGA------CA-AG
droWil2 scf2_1100000004577:948787-949035 + TGCTGCT---------------------------------------GCTGCT---ACTACTACTAC-TGCTCCGAGTGCCTTTGAGTGAACGCGTGGAATG--TT--------------------------GCCATATGCC-------------------------------------------ACCAT----------------------------------------------------------A--------------------TGTAT--------------------GTGTGTGTGTGT------------------------------------------------GTATGT----ATATATTAAGGATTCTCTGCTATAC---ATTAGCAAAAC------TC--------------TCTAT--ACTCTCCACTTAGGTCTGTGTGCGAGTGTTGTTTGCGTACTACC-ATG------TTTG--------------------------------------------------------GT-ACAGTCGCTGGCA---------------GCAACA------GCAACGGCA---ACGGC---AGCAGCAGCAACAGCAA------CA-GC
dp5 3:18498726-18498956 - GCCCTCGGCCCAGCC----------------------CCT-------TTGGCAAG-----------TTCCTGCTAATGCATTTGTA-ATGCGCCTGGGCTGCACATCCTGTGATA---TGTTTCGTCCA-GGACTCG---------------------------------------------------------------------------GACTTGGA--------------------------------------------------CTTGCACTTGGACTTGTTT-CTCTT--------------------------------------GTTT-ATTGTTA-------------------------------------AC--ACACAACTAACGAGCTGTACTATCTTC--------TCCT--------------------------------------------TTCTCC-TT-------TCTC-CTTCCCCA----------------------------------------------A---ACAGCCAACAGCA------------------------------------GCA---GCAGCAACAGCAGCAATGGCGA------CA-AG
droPer2 scaffold_34:447044-447271 - CTCGGCCCT---GCC----------------------CCT-------TTGGCAAG-----------TTCCTGCTAATGCATTTGTA-ATGCGCCTGGGCTGCACATCCTGTGATA---TGTTTCGTCCA-GGACTCG---------------------------------------------------------------------------GACTTGGA--------------------------------------------------CTTGCACTTGGACTTGTTT-CTCTT--------------------------------------GTTT-ATTGTTA-------------------------------------AC--ACACAACTAACGAGCTGTACTATCTTC--------TCCT--------------------------------------------TTCTCC-TT-------TCTC-CTTCCCCA----------------------------------------------A---ACAGCCAACAGCA------------------------------------GTA---GCAGCAACAGCAGCAATGGCGA------CA-AG
droAna3 scaffold_13266:14236086-14236272 - CACCGAAA-----------------------------------------------------------CACAGCTAATGCATTTGTA-ATGCGCCTGGCCTGCACATCCTGTCCA---------------GGGTCTCG---------------------------------------------------------------------------AACT--------------------------------------------------------------TGGACTTGTTT-CCCAT--------------------------------------GTTT-ATAGCCAAGACACACACATA----CATATA--------------TG--AT---GCTAACAAGAG------CCTTC--------TCC-----------------------------------------------TACCCTT-------TTTC------------------------------------------------------------CAGCCAACAGTA------------------------------------GCA---GCAGCAGCAGCAGCGGCGGGGA------CA-AG
droBip1 scf7180000396759:1895250-1895443 + TCCCTGGCC-------------------------------------ACCGAA--------------ACGCTGCTAATGCATTTGTA-ATGCGCCTGGCCTGCACATCCTGTCCA---------------GGGTCTCG---------------------------------------------------------------------------AACT--------------------------------------------------------------TGGACTTGTTT-CCCAT--------------------------------------GTTT-ATAGTCAAGAC----ACATA----CATATA--------------TG--AT---GCTAACAAGAG--G----CTTCTCTTGT--C--C--------------------------------------------TTCTCC-TT-------TTTC------------------------------------------------------------CAGCCAACAGCA---------------------------------------GCAGC---AGCAGCAGCAGCGGGGA------CA-AG
droKik1 scf7180000302277:1030645-1030829 - CTGGGC------------------------------------------------------------TTTCTGCTAATGCATTTGTA-ATGCGCCCGGGCTGCACATCCTGTCCT---------------CGGTCTCG---------------------------------------------------------------------------AGCTTGGA--------------------------------------------------------CTTGCACTTGTTT-CCCTT--------------------------------------GTTC-GCACTCG-------------------------------------AC--ATGCAACTAACAACCTG-ACTC--------TGT--T---T--TCTCC------------------------------------TCCATCCCT-------CTCT------------------------------------------------------------TAGCCAACAGCA------------------------------------GCG---GCAGCAGCAGCAGCGGTGGGGA------CA-AG
droFic1 scf7180000454107:697866-698116 + TTCGTGGCTGCAACT-----TCGTGGATGCAATGATTGCTGCTGCTGCTGTTGTT-------------------GTT--------------GCTGCTGCTACGG--------------------------GGTCATGCAACTTTAATATGTAAACAAC-----------------------ACC-------TCCGCCCCT----CCGTCTGT-----------------------------------G--------------------TGTCG--------------------GTGTGCGAGTGT------------------------------------------------GTGTG-----------------------------TGCGTCTACCGGAA----------------------------------------------------------------------------------------------GCAGACATGTTGTGACACTCTTTGACTTGAC------------CTCAGCAGCA-------GCAGCAGCAGCA---------GCAACAGCAACAACAACAATA---GGAGC---AGCAATAGCAGCAACAA------CA-AG
droEle1 scf7180000491214:4875144-4875326 - TTCCTCGCT----------------------------------------------------------GGCTGCTAATGCATTTGTA-ATGCGCCTGGCCTGCACATCCTGTCCTGTCCTGTCCTGTCGT-GGTCTCC---------------------------------------------------------------------------AACTTG--------------------------------------------------------------------T------------------------------------------------TC-CTGCC-----------CAAA----CATGCA--------------AG--ATGCAACTAACAATGT------CC--------------TTTCT--GC----------------------------------TCTTTTCC-TT---------------TGTC-------------------------------------------C---A---ACAGCCAACAGCA---------------------------------------GCAGC---AGCAGCAGTGGCGGGGA------CA-AG
droRho1 scf7180000777386:228980-229171 + CCCGCACCC-------------------------------------GCCCCC---TCTCCCTCGG-TTTCTGCTAATGCATTTGTA-ATGCGCCTGGGCTGCACATCCTGTCCT----------------GGTCTCG---------------------------------------------------------------------------AACTTGGA--------------------------------------------------------CTCGGACTTGTTT-CCCTT--------------------------------------GCTC-CTGGCCAA------------------------------------AC--ATGCAACTAACAATTC----------C--------TCT---TT--CC----------------------------------TCTTTT--------------------------------------------------------------CCCCTC---A---ACAGCCAACAGTT------------------------------------------GC---AGCAGCAGCGGCGGGGA------CA-AG
droBia1 scf7180000302143:721960-722137 + TTC-------------------------------------------------------------------TGCTAATGCATTTGTA-ATGCGCCTGGGCTGCACATCCTGTCCT----------------GGTCCCG---------------------------------------------------------------------------AACTTGGA--------------------------------------------------------CTTGGACTTGTTT-CCCTT--------------------------------------GTTGCAGGATGA-------------------------------------AC--ATGCAACTAACTAAGTG-ACCA------CTGGT--CCCTT--TCCCT------------------------------------TTCGCC----------CCTT----CATC-------------------------------------------C---A---ACAGCCA---------------------------------------------GCAGC---AGCAGCAACGGCGGGGA------CA-AG
droTak1 scf7180000415722:600490-600680 - TCCCTCG---------------------------------------GC-------------------TTCTGCTAATGCATTTGTA-ATGCGCCTGGGCTGCACATCCTGTCCT----------------GGTCCTGC--------------------------------------------------------------------------AACTTGGA--------------------------------------------------------CTTGGACTTGTTTGCCCTT--------------------------------------GTTGCAGGATGA-------------------------------------AC--ATGCAACTAACTAACTG-ACCA------TTTGT--T---C--TCCCT------------------------------------TTCGCC-TC-------TCCT-CTCGCCCA----------------------------------------------A---ACAGCCA---------------------------------------------GCAGC---AGCAGCAGCGGTGGAGA------TA-AG
droEug1 scf7180000409474:82742-82946 - TTTTGGGAG------GGCTTTTGGGAGTGCCTAAATTGCTA----AATTGTCGTC-------------------CGT--------------GCCTGTGCCGTGTG--------------------------GCAGTGTGGC-------------------------------------------AGTGTGT----------------------CCGTGTC------------------------CGTG---------------CCTCGTCTGCGT--------------------GTGTGTGTGTGTGTCCTGGTGTCCTGTCATGCCCCGTAGCAT-------------------------------------------------ATGCA----------------------------------------------------------------------------------------------------------------------------------------------------------GCA-------TTAGCAACGGCA---------GCAGCA------GCAGCAGCA---GCAAC---TGCAGCAGCGACAGCAA------TA-AC
dm3 chr2R:3789521-3789753 + TGCCGCT---------------------------------------GCAGTG--------------TGGCTGCTGCTGCATCG---------------------------------------------------------------------AGCAATGCGGTTTTTGGCGCCTGTTGTCAGCC-------TTCACCTCTTTTTCTGATTGT-----------------------------------A--------------------TGTAC--------------------ACATATAAGTGC------------------------------------------------ACATACATAC----------------------------------------------------ATA-TC----------------------------------------------TCGTTGCC-TTTGGAGAAGCTTG-----GCAAACAC------------------TTGACGGCGGTCATCGTCGCAGCAGCA-------GTAGCAGCAGCA---------ACA------ACAGCAGCAACA---ACAGC---AGCAACAGCAGCAGCAGCAACTGCAGAC
droSim2 2r:4612180-4612393 + TGCCGCT---------------------------------------GCAGTG-------------------GCTGCTGCATCG---------------------------------------------------------------------AGCAATGCGGTTTTTGGCGCCTGTTGTCAGCC-------TTCACCTCTTTTTCTGATTGT-----------------------------------A--------------------TGTAC--------------------ATATACAAGTGC------------------------------------------------ACATAC----AC--------------------------------------------------ATA-TC----------------------------------------------TCGTTGCC-TTTGGAGAAGCTTG-----GCAAACAC------------------TTGACGGCGGTCATCGCCGCA-------------GTAGCA---------------GCAGCAGCAACAGCA---------GCAGC---AGCAGCAGCAACAGCAGCAACTGCAGAC
droSec2 scaffold_1:1426053-1426285 + TGCCGCT---------------------------------------GCAGTG-------------------GCTGCTGCATCG---------------------------------------------------------------------AGCAATGCGGTTTTTGGCGCCTGTTGTCAGCC-------TTCACCTCTTTTTCTGATTGT-----------------------------------A--------------------TGTAC--------------------ATATACAAGTGC------------------------------------------------ACATA----CA----------------------------------------------------TA-TC----------------------------------------------TCGTTGCC-TTTGGAGAAGCTTG-----GCAAACAC------------------TTGACGGCGGTCATCGCCGCAGCAGCA-------GCAGCAGCAGCAGCAGCAGCAGCAGCA------GCAGCAGCA---GCAGC---AGCAGCAGCAACAGCAGCAACTGCAGAC
droYak3 2L:15084622-15084864 - CAGCAACTA------AGTATTTGCAAGTGGCCCAGTGTCT-------TCGTTGTG-----------TGTGTG-----------------------------------------------------------------------------------------------------------------------TGTGTGTTGTTG-------------------------------TTGTTGTTCGTGTGGCCCGGTGTGTGTAGCCTCGTTACCGT--------------------GTGTTTGTTTGTG----------------------------TTTTGATGG-------------------------------------TC--ACGTGGTCAGTTCAAAG-TTGG------CTTGG--C---------------------------------------------CCACTGCC-TTCT--TGTGCGT-----GACAAAAGT------------------C------------------CAGCAACA-------GTAGCAACAATA---------ACA------GTAGCAGCAGCA---AGAGC---AGCAACAGCAGCAGCA---AA--CA-CA
droEre2 scaffold_4845:21539680-21539866 + TTCCGTTCC-------------------------------------TCGG----------------CTTCTGCTAATGCATTTGTA-ATGCGCCTGGGCTGCACATCCTGTCCT----------------GGTCTCG---------------------------------------------------------------------------AGCTTGGA--------------------------------------------------------CTTGGACTTGTTT-CCCAT--------------------------------------GTTCCAGGATGA-------------------------------------AC--ATGCAACTAGCCAACTA-ACCG------CTTGT--C-------------------------------------------------CTCC-TC-------TCTC----------------------------------------------CCCCACGA-A--ATCAGCCA---------------------------------------------GCAGC---AGCAGCAGCGGCGGGGA------CA-AG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TTCCGAGCT-------------------------------------GCAGCG---TCGTCTACAAC-AGCTCCTAATGCATTTGTA-ATGCGCTTCGCCTGCACATCCTGTGT--------------------------------------------------------------------GTC-------TATACGTGTTTGTGTGTGT-------GCG------------------------TGTG--------------------TGTAT--------------------GCATGTGAGTGTGCGTACTTGTGCCTTGTTTATCTTCGTTGTTT-ATTGTGA-------------------------------------AC-----TAACTAACGAGCTG-GCTG----C--------TTCC--------------------------------------------TTCTTC-CT-------T--T----TAAC-------------------------------------------C---A---ACAGCCAACAGCA---------------GCAGCA------GCAGCAGCA---ACAGC---AGCAGCAGCAACGGCGA------CA-AGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---ACAGC---AGCAGCAGCAACGGC.............2340.251001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA---ACAGC---AGCAGCAGCA..................19200.102000000000000000000000000000000000000200000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAACAGCA---------------GCAGCA------GC..............................................19160.061000000000000000000010000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------GCAGCAGCA---ACAGC---AGCA........................20200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCA---------------GCAGCA------GCAGCA..........................................19200.051000000000000000000000000000000001000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCA---------------GCAGCA------GCAGCAGCA---ACAGC---............................28200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCA---------------GCAGCA------GCAGCAGCA---ACA.................................26200.051001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------------GCAGCA------GCAGCAGCA---ACAGC---A...........................23200.051000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---ACAGC---AGCAGCAGCAAC................19200.051010000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................TGTTTGTGTGTGT-------GCG------------------------TG......................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000000000000000000000000000000000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCA---------------GCAGCA------GCAGCAGCA---....................................23200.051000000000000000000000000000000001000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA---ACAGC---AGCAGCAGCAA.................21200.051000000000000000000000000000000000100000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAACAGCA---------------GCAGCA------GCAGCA..........................................21200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------GCAGCAGCA---ACAGC---AGCAG.......................21200.051000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA---ACAGC---AGCAG.......................19200.051000000000000000100000000000000000000000000000000000000000000000
droMoj3
TTCCGAGCT-------------------------------------GCAGTA---GCGTCTACAAC-AGCTCCTAATGCATTTGTA-ATGCGCTTCGCCTGCACATCCTGTGTG------T-----------TC----------------------------------------------------------CTCTGTGTGTGTG-------GGTGTGGG--------------------------------------------------------T---GTCTTGTTT-CTCTT----------------------------------CATTGTTT-ATTGCGA-------------------------------------AC-----TAACTAACGAGCTG-ACTG----C--------TTCC--------------------------------------------TTTTCC-CT-------TTTA-ATCCGACA----------------------------------------------A---ACAGCTAACAGCA---------------GCA------ACAGCA---------GCAGC---AACAGCAGCAACGGCGA------CA-AGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAACAGCA---------------GCA------ACAGCA---------GC..................................2211.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACAGCA---------------GCA------ACAGCA---------GCAGC---............................2320.501000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------ACAGCA---------GCAGC---AACAGCAGC...................22200.051100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------GCAGC---AACAGCAGCAAC................19200.051100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCA---------------GCA------ACAGCA---------GCAGC---AAC.........................24200.051000010
droGri2
AGC----------------------------------------------------------------AGTTACTAATGCATTTGTA-ATGCGCTTCGCCTGCACATCCTGTCTA--------------------------------------------------------------------------------------------------AGCTTGTCCTTTTCACTTGTTCTTTCTCTCTCTCTCCCCCGCTCTCCCCCGCTCTTTCTCTGT--------------------CCTTCTCTTTTAG-TCTCGC--------CG--TTTCTTGTTT-ATTGTGA-------------------------------------AC-----TAACTAACGAGCT-----------------------------------------------------------------------TC-CT-----TTTCGT----TA--A----------------------------------------------C---ACAGCGAACAGCA---------------GCAGCAGCAACTGCAGCAGCA---ACAGC---AGCAGCAGCAACGGCGA------CA-AGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACTGCAGCAGCA---ACAGC---A...........................23110.09110
droWil2
TGCTGCT---------------------------------------GCTGCT---ACTACTACTAC-TGCTCCGAGTGCCTTTGAGTGAACGCGTGGAATG--TT--------------------------GCCATATGCC-------------------------------------------ACCAT----------------------------------------------------------A--------------------TGTAT--------------------GTGTGTGTGTGT------------------------------------------------GTATGT----ATATATTAAGGATTCTCTGCTATAC---ATTAGCAAAAC------TC--------------TCTAT--ACTCTCCACTTAGGTCTGTGTGCGAGTGTTGTTTGCGTACTACC-ATG------TTTG--------------------------------------------------------GT-ACAGTCGCTGGCA---------------GCAACA------GCAACGGCA---ACGGC---AGCAGCAGCAACAGCAA------CA-GCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-ACAGTCGCTGGCA---------------GCAACT------................................................2012.00220000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA------GCAACGGCA---ACGGC---AGCA........................2160.17100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---ACGGC---AGCAGCAGCAACA...............19150.13200020
...........................................................................................................................................................................................AT----------------------------------------------------------A--------------------TGTAT--------------------GTGTGTGTGT.............................................................................................................................................................................................................................................................................................................................................18200.10200020
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGGCA---ACGGC---AGCAGCAG....................21100.10100001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGGCA---ACGGC---AGCAGCAGCT..................23120.08100001
............................................................................................................................................................................................T----------------------------------------------------------A--------------------TGTAT--------------------GTGTGTGTGTGT------------------------------------------------GTATGT----.................................................................................................................................................................................................................................................................................25180.06101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---------------GCAACA------GCAACGGCA---....................................18200.05100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA------GCAACGGCA---ACGGC---............................19200.05100010
dp5
GCCCTCGGCCCAGCC----------------------CCT-------TTGGCAAG-----------TTCCTGCTAATGCATTTGTA-ATGCGCCTGGGCTGCACATCCTGTGATA---TGTTTCGTCCA-GGACTCG---------------------------------------------------------------------------GACTTGGA--------------------------------------------------CTTGCACTTGGACTTGTTT-CTCTT--------------------------------------GTTT-ATTGTTA-------------------------------------AC--ACACAACTAACGAGCTGTACTATCTTC--------TCCT--------------------------------------------TTCTCC-TT-------TCTC-CTTCCCCA----------------------------------------------A---ACAGCCAACAGCA------------------------------------GCA---GCAGCAACAGCAGCAATGGCGA------CA-AGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA------------------------------------GCA---GCAGCAACAGCAGCA..................21200.2040400000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA------------------------------------GCA---GCAGCAACAGCAGC...................21200.0510010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCA------------------------------------GCA---GCAGCAAC.........................19200.0510000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA------------------------------------GCA---GCAGCAACAGCA.....................19200.0510100000000
droPer2
CTCGGCCCT---GCC----------------------CCT-------TTGGCAAG-----------TTCCTGCTAATGCATTTGTA-ATGCGCCTGGGCTGCACATCCTGTGATA---TGTTTCGTCCA-GGACTCG---------------------------------------------------------------------------GACTTGGA--------------------------------------------------CTTGCACTTGGACTTGTTT-CTCTT--------------------------------------GTTT-ATTGTTA-------------------------------------AC--ACACAACTAACGAGCTGTACTATCTTC--------TCCT--------------------------------------------TTCTCC-TT-------TCTC-CTTCCCCA----------------------------------------------A---ACAGCCAACAGCA------------------------------------GTA---GCAGCAACAGCAGCAATGGCGA------CA-AGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
CACCGAAA-----------------------------------------------------------CACAGCTAATGCATTTGTA-ATGCGCCTGGCCTGCACATCCTGTCCA---------------GGGTCTCG---------------------------------------------------------------------------AACT--------------------------------------------------------------TGGACTTGTTT-CCCAT--------------------------------------GTTT-ATAGCCAAGACACACACATA----CATATA--------------TG--AT---GCTAACAAGAG------CCTTC--------TCC-----------------------------------------------TACCCTT-------TTTC------------------------------------------------------------CAGCCAACAGTA------------------------------------GCA---GCAGCAGCAGCAGCGGCGGGGA------CA-AGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTA------------------------------------GCA---GCAGCAGCAGCAGC...................2360.171010000
droBip1
TCCCTGGCC-------------------------------------ACCGAA--------------ACGCTGCTAATGCATTTGTA-ATGCGCCTGGCCTGCACATCCTGTCCA---------------GGGTCTCG---------------------------------------------------------------------------AACT--------------------------------------------------------------TGGACTTGTTT-CCCAT--------------------------------------GTTT-ATAGTCAAGAC----ACATA----CATATA--------------TG--AT---GCTAACAAGAG--G----CTTCTCTTGT--C--C--------------------------------------------TTCTCC-TT-------TTTC------------------------------------------------------------CAGCCAACAGCA---------------------------------------GCAGC---AGCAGCAGCAGCGGGGA------CA-AGSizeHit CountTotal NormTotal
No Reads
droKik1
CTGGGC------------------------------------------------------------TTTCTGCTAATGCATTTGTA-ATGCGCCCGGGCTGCACATCCTGTCCT---------------CGGTCTCG---------------------------------------------------------------------------AGCTTGGA--------------------------------------------------------CTTGCACTTGTTT-CCCTT--------------------------------------GTTC-GCACTCG-------------------------------------AC--ATGCAACTAACAACCTG-ACTC--------TGT--T---T--TCTCC------------------------------------TCCATCCCT-------CTCT------------------------------------------------------------TAGCCAACAGCA------------------------------------GCG---GCAGCAGCAGCAGCGGTGGGGA------CA-AGSizeHit CountTotal NormTotal
No Reads
droFic1
TTCGTGGCTGCAACT-----TCGTGGATGCAATGATTGCTGCTGCTGCTGTTGTT-------------------GTT--------------GCTGCTGCTACGG--------------------------GGTCATGCAACTTTAATATGTAAACAAC-----------------------ACC-------TCCGCCCCT----CCGTCTGT-----------------------------------G--------------------TGTCG--------------------GTGTGCGAGTGT------------------------------------------------GTGTG-----------------------------TGCGTCTACCGGAA----------------------------------------------------------------------------------------------GCAGACATGTTGTGACACTCTTTGACTTGAC------------CTCAGCAGCA-------GCAGCAGCAGCA---------GCAACAGCAACAACAACAATA---GGAGC---AGCAATAGCAGCAACAA------CA-AGSizeHit CountTotal NormTotal
No Reads
droEle1
TTCCTCGCT----------------------------------------------------------GGCTGCTAATGCATTTGTA-ATGCGCCTGGCCTGCACATCCTGTCCTGTCCTGTCCTGTCGT-GGTCTCC---------------------------------------------------------------------------AACTTG--------------------------------------------------------------------T------------------------------------------------TC-CTGCC-----------CAAA----CATGCA--------------AG--ATGCAACTAACAATGT------CC--------------TTTCT--GC----------------------------------TCTTTTCC-TT---------------TGTC-------------------------------------------C---A---ACAGCCAACAGCA---------------------------------------GCAGC---AGCAGCAGTGGCGGGGA------CA-AGSizeHit CountTotal NormTotal
No Reads
droRho1
CCCGCACCC-------------------------------------GCCCCC---TCTCCCTCGG-TTTCTGCTAATGCATTTGTA-ATGCGCCTGGGCTGCACATCCTGTCCT----------------GGTCTCG---------------------------------------------------------------------------AACTTGGA--------------------------------------------------------CTCGGACTTGTTT-CCCTT--------------------------------------GCTC-CTGGCCAA------------------------------------AC--ATGCAACTAACAATTC----------C--------TCT---TT--CC----------------------------------TCTTTT--------------------------------------------------------------CCCCTC---A---ACAGCCAACAGTT------------------------------------------GC---AGCAGCAGCGGCGGGGA------CA-AGSizeHit CountTotal NormTotal
No Reads
droBia1
TTC-------------------------------------------------------------------TGCTAATGCATTTGTA-ATGCGCCTGGGCTGCACATCCTGTCCT----------------GGTCCCG---------------------------------------------------------------------------AACTTGGA--------------------------------------------------------CTTGGACTTGTTT-CCCTT--------------------------------------GTTGCAGGATGA-------------------------------------AC--ATGCAACTAACTAAGTG-ACCA------CTGGT--CCCTT--TCCCT------------------------------------TTCGCC----------CCTT----CATC-------------------------------------------C---A---ACAGCCA---------------------------------------------GCAGC---AGCAGCAACGGCGGGGA------CA-AGSizeHit CountTotal NormTotal
No Reads
droTak1
TCCCTCG---------------------------------------GC-------------------TTCTGCTAATGCATTTGTA-ATGCGCCTGGGCTGCACATCCTGTCCT----------------GGTCCTGC--------------------------------------------------------------------------AACTTGGA--------------------------------------------------------CTTGGACTTGTTTGCCCTT--------------------------------------GTTGCAGGATGA-------------------------------------AC--ATGCAACTAACTAACTG-ACCA------TTTGT--T---C--TCCCT------------------------------------TTCGCC-TC-------TCCT-CTCGCCCA----------------------------------------------A---ACAGCCA---------------------------------------------GCAGC---AGCAGCAGCGGTGGAGA------TA-AGSizeHit CountTotal NormTotal
No Reads
droEug1
TTTTGGGAG------GGCTTTTGGGAGTGCCTAAATTGCTA----AATTGTCGTC-------------------CGT--------------GCCTGTGCCGTGTG--------------------------GCAGTGTGGC-------------------------------------------AGTGTGT----------------------CCGTGTC------------------------CGTG---------------CCTCGTCTGCGT--------------------GTGTGTGTGTGTGTCCTGGTGTCCTGTCATGCCCCGTAGCAT-------------------------------------------------ATGCA----------------------------------------------------------------------------------------------------------------------------------------------------------GCA-------TTAGCAACGGCA---------GCAGCA------GCAGCAGCA---GCAAC---TGCAGCAGCGACAGCAA------TA-ACSizeHit CountTotal NormTotal
No Reads
dm3
TGCCGCT---------------------------------------GCAGTG--------------TGGCTGCTGCTGCATCG---------------------------------------------------------------------AGCAATGCGGTTTTTGGCGCCTGTTGTCAGCC-------TTCACCTCTTTTTCTGATTGT-----------------------------------A--------------------TGTAC--------------------ACATATAAGTGC------------------------------------------------ACATACATAC----------------------------------------------------ATA-TC----------------------------------------------TCGTTGCC-TTTGGAGAAGCTTG-----GCAAACAC------------------TTGACGGCGGTCATCGTCGCAGCAGCA-------GTAGCAGCAGCA---------ACA------ACAGCAGCAACA---ACAGC---AGCAACAGCAGCAGCAGCAACTGCAGACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCAGCA-------GTAGCAGCAGCA---------AC..........................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................AATGCGGTTTTTGGCGCCTGTTGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................TTTTTGGCGCCTGTTGTCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................A-TC----------------------------------------------TCGTTGCC-TTTGGAGAAGC.....................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA-------GTAGCAGCAGCA---------ACA------A..................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCAGCAGCA---------ACA------ACAGCA.............................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACA---ACAGC---AGCAA.......................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---AGCAACAGCAGCAGCAGC..........19200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACA---ACAGC---AGCAACAG....................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------ACAGCAGCAACA---ACAGC---AG..........................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000020000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAGCAACTGCAG..2250.2010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---ACAGC---AGCAACAGCAGCAGCAGCAA........26110.1820000000000000000000000000000000000000000000000000000000000100000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA---------ACA------ACAGCAGCAACA---AC..................................22190.1630000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA---ACAGC---AGCAACAGCAGCAGC.............24200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCA---------ACA------ACAGCAGCA..........................................22200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000020000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA---------ACA------ACAGCAGC...........................................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAGCAGC..........18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA---------ACA------ACAGCAGCAAC........................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---ACAGC---AGCAACAGCAGCAGCAGC..........25200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-------GTAGCAGCAGCA---------ACA------AC.................................................2070.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA-------GTAGCAGCAGCA---------ACA------AC.................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---------ACA------ACAGCAGCAACA---ACAGC---A...........................2470.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------ACA------ACAGCAGCAACA---ACAGC---AGC.........................2580.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---ACAGC---AGCAACAGCAGCAGCAGCAAC.......2890.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA---ACAGC---AGCAACAGCAGCAGCA............24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC---AGCAACAGCAGCAGCAGC..........22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCA---------ACA------ACAGCA.............................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACA---ACAGC---AGCA........................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------ACAGCAGCAACA---ACAGC---AGC.........................22200.1020000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACA---ACAGC---AGCAACAGCAGC................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---AGCAACAGCAGCAGCAGCA.........22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC---AGCAACAGCAGCAGCAGCA.........23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACA---ACAGC---AGCA........................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA---------ACA------ACAGCAGCAACA---AC..................................23140.0710000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA-------GTAGCAGCAGCA---------............................................................21150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------ACA------ACAGCAGCAACA---ACAGC---............................21160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA---------ACA------ACAGCAGCAACA---ACA.................................23170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---AGCAACAGCAGCAGCAGCAA........22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---ACAGC---AGCAACAGCAGCA...............19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA---------ACA------ACAGCAGCA..........................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---------ACA------ACAGCAGCAACA---ACA.................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC---AGCAACAGCAGCAGCAGCAAC.......25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACA---ACAGC---AGCAACAGC...................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---AGCAACAGCAGCAGC.............18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC---AGCAACAGCAGCAGCAG...........21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA-------GTAGCAGCAGC......................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACA---ACAGC---AGCAACAGCAGCA...............24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA---------ACA------ACAGCAGCAACA---....................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA---------ACA------ACAGCAGCAACA---A...................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACA---ACAGC---AGCAACAGCAGCAG..............27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---AGCAACAGCAGCAGCAGCAA........21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------ACAGCAGCAACA---ACAGC---A...........................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACA---ACAGC---AGCAACAGCA..................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAGCAGCAGCAAC.......20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC---AGCAACAGCAGCAGCAGCAA........24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------ACA------ACAGCAGCAACA---AC..................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA---------ACA------ACAGCA.............................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---AGCAACAGCAGCAGCAGCA.........20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------ACAGCAGCAACA---ACAGC---AGT.........................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACA---ACAGC---AGCAACAGC...................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------ACAGCAGCAACA---ACAGC---AGC.........................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---AGCAACAGCAGCAGCA............19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---AGCAACAGCAGCAGCAGCA.........21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAGCAA........18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA---ACAGC---AGCAACAGCAGC................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---ACAGC---AGCAACAGCAGCAG..............21200.0510000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA---------ACA------ACAGCAGCAA.........................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACA---ACAGC---AGCAACAGCAGC................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGC---AGCAACAGCAGCAGC.............20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA---ACAGC---AGCAACAGCA..................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAGCAGCAGCA.........18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA---ACAGC---AGCAACAGCAGCA...............22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGC---AGCAACAGCAGCAGCAGCA.........24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAGCAGCA.........19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGC---AGCAACAGCAGCAGCA............21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACA---ACAGC---AGCAACAGCAT.................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
droSim2
TGCCGCT---------------------------------------GCAGTG-------------------GCTGCTGCATCG---------------------------------------------------------------------AGCAATGCGGTTTTTGGCGCCTGTTGTCAGCC-------TTCACCTCTTTTTCTGATTGT-----------------------------------A--------------------TGTAC--------------------ATATACAAGTGC------------------------------------------------ACATAC----AC--------------------------------------------------ATA-TC----------------------------------------------TCGTTGCC-TTTGGAGAAGCTTG-----GCAAACAC------------------TTGACGGCGGTCATCGCCGCA-------------GTAGCA---------------GCAGCAGCAACAGCA---------GCAGC---AGCAGCAGCAACAGCAGCAACTGCAGACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------GCAGCAGCAACAGCA---------GCAGC---AGC.........................24200.05110000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAGCAGCA.........16200.05100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAGCA---------GCAGC---AGCAGCAGC...................27200.05100000000000100000
droSec2
TGCCGCT---------------------------------------GCAGTG-------------------GCTGCTGCATCG---------------------------------------------------------------------AGCAATGCGGTTTTTGGCGCCTGTTGTCAGCC-------TTCACCTCTTTTTCTGATTGT-----------------------------------A--------------------TGTAC--------------------ATATACAAGTGC------------------------------------------------ACATA----CA----------------------------------------------------TA-TC----------------------------------------------TCGTTGCC-TTTGGAGAAGCTTG-----GCAAACAC------------------TTGACGGCGGTCATCGCCGCAGCAGCA-------GCAGCAGCAGCAGCAGCAGCAGCAGCA------GCAGCAGCA---GCAGC---AGCAGCAGCAACAGCAGCAACTGCAGACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA---GCAGC---AGCAGCAGCAACA...............25200.0510010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAGCA............................................................18200.0510010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC---AGCAGCAGCAACAGCAGC..........22200.0510010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA---GCAGC---AGCAGCAGC...................22200.0510001
droYak3
CAGCAACTA------AGTATTTGCAAGTGGCCCAGTGTCT-------TCGTTGTG-----------TGTGTG-----------------------------------------------------------------------------------------------------------------------TGTGTGTTGTTG-------------------------------TTGTTGTTCGTGTGGCCCGGTGTGTGTAGCCTCGTTACCGT--------------------GTGTTTGTTTGTG----------------------------TTTTGATGG-------------------------------------TC--ACGTGGTCAGTTCAAAG-TTGG------CTTGG--C---------------------------------------------CCACTGCC-TTCT--TGTGCGT-----GACAAAAGT------------------C------------------CAGCAACA-------GTAGCAACAATA---------ACA------GTAGCAGCAGCA---AGAGC---AGCAACAGCAGCAGCA---AA--CA-CASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------ACA------GTAGCAGCAGCA---AGAGC---............................2111.00100100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGC---AGCAACAGCAGCAGC.............19100.10101000000000
droEre2
TTCCGTTCC-------------------------------------TCGG----------------CTTCTGCTAATGCATTTGTA-ATGCGCCTGGGCTGCACATCCTGTCCT----------------GGTCTCG---------------------------------------------------------------------------AGCTTGGA--------------------------------------------------------CTTGGACTTGTTT-CCCAT--------------------------------------GTTCCAGGATGA-------------------------------------AC--ATGCAACTAGCCAACTA-ACCG------CTTGT--C-------------------------------------------------CTCC-TC-------TCTC----------------------------------------------CCCCACGA-A--ATCAGCCA---------------------------------------------GCAGC---AGCAGCAGCGGCGGGGA------CA-AGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCGGCGGGGA------.....1530.3310000001

Generated: 05/19/2015 at 01:48 PM