ID:

dvi_5622

 Coordinate:

scaffold_12875:7264194-7264344 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dvir_GLEANR_6935:1]; CDS [Dvir\GJ21589-cds]; intron [Dvir\GJ21589-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGCAGCCAACACAGCAGCAACTGCGGCTGCAATTAGTCGACGGCTTAAAGGTAAGTGGCATGTGGAAAACACATGGGCTGGGTGCGAATCCAGGGGGAGAATATGTGATTGTGAATGTGAATGTGCCTGTGGAATCGGCTGCGTAGACATTAAGGCGTTTAATTGGGACTTGCGAGCTGGGTTTGGGAGCACAAGTGCAGCCAAGCGACAGGCACAACGATTGATGGTGTGAATGGCAGCAGCTGCGAGTG
**************************************************((((((..((((((.....))))))..((((((....))))))............(((.(((.(((((..(((((((.........))).))))..)))))...))).)))......))))))..((((.(((((......))))).))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 SRR060672
9x160_females_carcasses_total
 V116
male body		 V047
embryo
 SRR1106715
embryo_4-6h
 SRR060666
160_males_carcasses_total
 SRR060687
9_0-2h_embryos_total
 M061
embryo
 SRR060668
160x9_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060658
140_ovaries_total
 SRR060660
Argentina_ovaries_total
 SRR060681
Argx9_testes_total
........................................................................................................................TTGTGCCTGTGAAATCGGCT............................................................................................................... 20 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................GGGGAGGAGATGTGTTTGTGA......................................................................................................................................... 21 3 3 1.67 5 0 1 0 0 0 2 2 0 0 0 0 0 0 0 0
.................................................................................................................ACTGGGAATGTGCCTGTGGAAA.................................................................................................................... 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........CAGCAGCAACTGCGGCTGCAATTAGTCGACGGCTTAAAG......................................................................................................................................................................................................... 39 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................GGGGAGGAGATGTGTTTGTGAA........................................................................................................................................ 22 3 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................ATGTGGAAGACACATGGACTG........................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GGGAGGAGATGTGTTTGTGA......................................................................................................................................... 20 3 9 0.89 8 0 2 3 0 0 0 0 1 0 0 0 0 1 1 0
...AGCCAACACAGCAGCAAC...................................................................................................................................................................................................................................... 18 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................CACGTGGAAACCACATGGGT............................................................................................................................................................................. 20 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................ATGTGGAAATCACAAGGG.............................................................................................................................................................................. 18 2 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
............................ACAATTAGTCGACGTCTTA............................................................................................................................................................................................................ 19 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................GGTTTCGGAGTACAAGTGGA.................................................... 20 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................GGTTCGAATCCAGGTGGA......................................................................................................................................................... 18 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................GCCTGTGGAGTAGCCTGCGT........................................................................................................... 20 3 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................GTGAGCTGGGTTAGGGAAC............................................................. 19 3 12 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TTGTGCTTGTGAAATCGGCT............................................................................................................... 20 3 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................CGTGAGCTGGGTTTGGGAA.............................................................. 19 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.......................................AAGGCTTAAAGGTAAATG.................................................................................................................................................................................................. 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CCGTCGGTTGTGTCGTCGTTGACGCCGACGTTAATCAGCTGCCGAATTTCCATTCACCGTACACCTTTTGTGTACCCGACCCACGCTTAGGTCCCCCTCTTATACACTAACACTTACACTTACACGGACACCTTAGCCGACGCATCTGTAATTCCGCAAATTAACCCTGAACGCTCGACCCAAACCCTCGTGTTCACGTCGGTTCGCTGTCCGTGTTGCTAACTACCACACTTACCGTCGTCGACGCTCAC
**************************************************((((((..((((((.....))))))..((((((....))))))............(((.(((.(((((..(((((((.........))).))))..)))))...))).)))......))))))..((((.(((((......))))).))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V047
embryo
 SRR060660
Argentina_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 M028
head
 SRR060687
9_0-2h_embryos_total
..GTCGGTTGTGACGTCGTTTA..................................................................................................................................................................................................................................... 20 2 4 0.50 2 0 1 1 0 0
....................................................................................................................................................................................................CGACGGTGCGCTGTCCGTG.................................... 19 2 6 0.17 1 1 0 0 0 0
..................................................................................................................................................TGTGATTCCGCAGATTATC...................................................................................... 19 3 9 0.11 1 1 0 0 0 0
....................................................................................................................................................................................CAAATTCTCGTGATCACGTC................................................... 20 3 15 0.07 1 0 0 0 1 0
...........................................................................................ACCGCCTCTTATACTCTAA............................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:7264144-7264394 + dvi_5622 GGCAGCCAACA--------------------------CA----------GC-----------------------------------------AGCAACT---------GCGGCTGCAATTAGTCGACGGC-T----TAAA--------------------------GGTAAGTGG------------------------------------------------------------------------------------------------------------------------------------------CATG------TGGAAAA--CA-----------------CA------------------------------------------------------------------------TGG----------------------GCTGGG--TGCG-AA-TCCA--GGGGGAGAATATGTGATTGTGAAT------GTGAATGTGCCTGTGGAATCGGCTGCG-------------------------------TAGACATTAAGGCGTTTAATTGGGACTTGCGAGCTGGGTTTGGG-------------AGCA----CAAGTGCAGCCAAGCGACAGGCACAACGATTGATGGTGTG-----------------------------------AAT--------------GGCAGCAGCTGCG-AGTG
droMoj3 scaffold_6496:26026538-26026804 + G-CAGCCAACA--------------------------CA----------GC-----------------------------------------GGCTACT---------GCGGCTGCAATTAGTCGACGGT-T----TAAA--------------------------GGTGAGTGG------------------------------------------------------------------------------------------------------------------------------------------CATG------CGGACAACTCA-----------------CGTGTGAGCAGTGGGTGGCCTGAACGCGGGATGTTCGGGTAGGGAAAGAGGAAGTACCTATGTGTGT-------GTG-----------------------------------------------------------A------GTGAGTGTGGCAATG-------------------A-------------------------------CAGACGTTAAGGCGTTTAATTTGGACTCCAGAGTTGGGATTGGG-------------AGCA----CAAGTGCAGCCAAGCGACAGCCCCAACGATTGATGGTGTG-----------------------------------AAT--------------CGTAGCAGCTGTG-TGCG
droGri2 scaffold_15245:816533-816809 + GGCTGCAAACA--------------------------CA----------GC-----------------------------------------AGCAACT---------GCGGCTGCAATTAGTCGACGGC-T----CAAA--------------------------GGTGAGT----------------------------------------------------------------------------------------------------------------------------------------GTGGCATGTGTGTGTGGACAAAACA-----------------TATGCGAAT-----------------GGGGCAGGGCGAACAGCGTCAGGGGAA-------TGTGTAT-------CTG-----------------------------------------------------------A------ATGGGAATCCAAATGGGCAG-----------GGCA-------------------------------TACACATTAAGGCGTTTCATTGGAACTTGCGAGCGGGGATTGGGCTTGGGAAGCATAAGCACCGTCAAGTGCAACCAAGCGACAGGCACTACGATTGATGGTGTG-----------------------------------AAC--------------GCCAGCAGCTGTG-TGTG
droWil2 scf2_1100000001422:1234-1468 + GGCGGCGGGTA--------------------------CA----------GC-----------------------------------------AGTGGCAGCGGGTACAGCAGTGGCA-----GCGGCGGC-G----GGTA--------------------------CAGCAGTGGCAGC--GGTG-----------------------------------------------------------------------------------------------------------------------------------------GTGGGTACAGCA-----------------GTGGCAGTG-----------------GCGGCGGGTCCAGCAGTGGCAGCGGGTGCAGCAGTGGCAGC-------GGCGGCGGG----------------------T--ACA--------------------------------------------------------------------------------------------------------GC----------------------------------------------------A----GTGGC-------AGCGGGTACAGCAGTGGCAGCGGGTGCAGCAGTGGCAGCGGCGGCAGGTACCGTAATGGATGCGAC--------------GGCAGCGGCGGCG-GGT-
dp5 4_group1:2615156-2615280 - AGCAAAC-----------------------------------AGCATCAGC-----------------------------------------AACAGCA---------GCAA---CCCAAA---------ATCGCA----TCAAATTTTTAAACGGCAATACGCAAAGTAAGT----------------------------------------------------------------------------------------------------------------------------------------GAAGTGTAAATGAAAGGA-------------------------------------------------------------------------------------------AAGAAAA--------------------------------------------------------------AACGGGAAT------GGGAATGGGACT------------------------GAGGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-
droPer2 scaffold_5:2591240-2591364 + AGCAAAC-----------------------------------AGCATCAGC-----------------------------------------AACAGCA---------GCAA---CCCAAA---------ATCGCA----TCAAATTTTTAAACGGCAATACGCAAAGTAAGT----------------------------------------------------------------------------------------------------------------------------------------GAAGTGTAAATGAAAGGA-------------------------------------------------------------------------------------------GAGAAAA--------------------------------------------------------------AACGGGAAT------GGGAATGGGACT------------------------GAGGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-
droAna3 scaffold_13266:13227677-13227808 + ACCAAAA-----------------------------------AGCAACAGC-----------------------------------------AACATTA---------GCGGCAACAGCAGTTTGAAAAC-T----TG--------------------------------------------------------------CGCATTTGTTGTCTCTC--------------GTGAAAGTATGAGGGTGTGAGAGTGT---------GTGTGT------------------------------------------------GA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT----GTTAGAGTGCGGGTGCGTTTG-----TG----------------------------------------------------------------------------------------------------------------------AGCG-------------------------------CGGC-
droBip1 scf7180000396691:2556809-2556891 + TGCAACCG------------------------------------CAGCACC-----------------------------------------ATCAGCA---------GCAA---CACAAT---------GCC----A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA------------------------------------------------------------------------AGTGAATGATATAGTCAGTACATGGGCTGGAACTATG-GA-TCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGG-
droKik1 scf7180000302639:2208661-2208761 + AACAGGTTACA--------------------------CA----------TC-----------------------------------------CGCAGCA---------GCAGCAGCAGCCGGTCGTCTACGCC----AGCTGCAAGCTCCAAGCGGCAGTCGGTAACCTGGGC----------------------------------------------------------------------------------------------------------------------------------------CTGGT--------------------------------------------------------------------------------------------------------------------------------------------------------GCCC--GAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG--------------------------------GGA-
droFic1 scf7180000453839:1864527-1864671 - AGCAGCAG------------------------------------------C-----------------------------------------AACATCA---------GCAGCTGAGACTGATTGT-------------------------------------------------------GGTTGGGTA-------------------------------------------------------------------------------------TGTGGA-------------------TGTGGAGTTGGAGTTGGAGTTGAAGT----------------------CGA-------------------------------------------------------------------GGATGAG--------------------------------------------------------------GATGAGGAT------GTGGATGTGGTT------------------------AGTGGAT----GTCCGTGTGCGTAGACGTTCA-----TT---------------------------------------------------------------------------------------------------------------------AATTG-------------------------------TGAC-
droEle1 scf7180000491255:2909218-2909332 - AACAGCCA------------------------------------CAGCAGC-----------------------------------------AACATCA---------GCAGCTGAGACTGATTGT-------------------------------------------------------GGTCGGGTA-------------------------------------------------------------------------------------TG-------------------------TG-----------------------------------------------------------------------------------------------------------------------GA--------------------------------------------------------------GTTGAGGAT------GTGGATGTGGTT------------------------AGTGGAT----GTCCGTGTGCGTAGACGTTCA-----TT---------------------------------------------------------------------------------------------------------------------AATTG-------------------------------TGAC-
droRho1 scf7180000779488:643778-643961 + AGCAACAGGTG--------------------------CA----------AC-----------------------------------------ACCAGCA---------GCAGCAGCAGATCGCTCAGGAT-C----CAGCAGCA--------------------------AGTGC----CT---------T------------------------------------------------------------------------------------------------------------------------------------CGAGGAG--CA-----------------CC------------------------------------------------------------------------AGCGATTGG----------------------T--GCAGCAG-CAATTGGGCGCGAACACGCCGCTTCGC------ATCT--TTGTGCCCGACGAAGAGGCTTCCGAGTCGGTGAGTCC--------------------A-----------TACATAATA-------------------------------------------------------------------------------------------------------------------------------------ATTAGCAAACTAAGTTT-
droBia1 scf7180000302402:4323384-4323537 + AGCAACAGGTG--------------------------CA----------GC-----------------------------------------AGCAGCA---------GCAA---CAAGTTGCACAGGAC-C----CAGCAGCA--------------------------AGTGC----CT---------T------------------------------------------------------------------------------------------------------------------------------------CGAGGAG--CA-----------------CC------------------------------------------------------------------------AGCGACTGG----------------------T--GCAGCAG-CAATTGGGCGCCAATACGCCACTTCGC------ATCT--TTGTGCCCGACGAGGAGGCCGCCGAATCGGTAAGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000414425:215638-215883 + GGTGGTCCTGA----------TTCCGG--GGATCA--TGT--TGCA---AC-----------------------------------------ATCGTCATC------AGCAGCAGCAGCGGCGGCA--GC-A----ACAG--------------------------CGACATT--------GGCG-------------------------GGATCCTCCGGGATTTACGGTGCAGACG---------------ATGCAGGTGCGGGTGTTGCTAGTGGCGGTGTCGGTGTTGGTGTTGGT----------------------------------------------------------------------------------------------------GGTATTAGCAGTGCGATT-------AGCGGTGGA----------------------T--TTA------------------------------------------------------------------------------------------------------------------------------------------------------------GCG----GTGGTGCGGCTGAGCCGCAACAGCAGCAACAGGTGGTGTC-----------------------------------G-C--------------AGCAGCAGCAGTTGCAA-
droEug1 scf7180000409886:137089-137193 + AACAGGTGACA--------------------------CA-TCCGCAGCAGC-----------------------------------------AACAGCA---------GCAG---CCAGTGGTCTACG---CC----AGCTGCAAGTTGCAGGCGGCCGTCGGCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGGG--CATG-GT-TCCT--GAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC-------------------------------GGAT-
dm3 chr3L:16470248-16470404 - GCCAGCAAAAG--------------------------CA----------GC-----------------------------------------AACATCA---------GCAGCTGAGACTGATTGT-------------------------------------------------------GGTCGGGTAT---------TG------------------------------------------------------GGT---------------------A-------------------TATGG--------AGT-----TGGGT--------ATTGGGCATGGGGATGT-------------------------------------------------------------------GAATGTG--------------------------------------------------------------GATGAGGAT------GTGGATGTGGTT------------------------AGTGGATGGATGTCCGTGTGCGTAGACGTTCA-----TT---------------------------------------------------------------------------------------------------------------------AATTG-------------------------------TGAC-
droSim2 x:16405996-16406141 - GGCATAG-----------------------------------TGCTGTTGCATGGCCGCCGCATATTGGGCCACGTTTAACCCATTGCC---GCCGGCG---------GTGG-------------------------------------------------------------------GT---------GGAAAGTGCCCCAGCTTGCCGT-------------------GCGGATGCATTAGCGCATGCGGATGT---------GTGTGC------------------------------------------------GG------------------------------------------------------------------------------------------------------------------------ATGCGT----------------------------------------GGGC-----------------------------------------------------G--------------GATGCGGTTG-----TG--------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_21:362167-362274 - AGCAACAG------------------------------------CAGCAGC-----------------------------------------AGCAGCA---------ACAGATGAA------------------------------------CAGCAGTCGGCAGAGTCA-----------------------------CA-----------------------------------------------------------------------------AT----------------------------GACATGTGCCGGCAAGT--------GGTCACCACGCCAATGG-------------------------------------------------------------------GCATGCA-----------------------------------------GCTC--AAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG-------------------------------GAGA-
droYak3 X:15911362-15911561 - GGCATAG-----------------------------------TGCTGTTGCATGGCCGCCGCATATTGGGCCACGTTTAACCCATTGCCGCCGGCGGCG---------GTGG------GTGGAAAGTGGC-C----CA-----------------------------------------------------------------GCTTGCCGT-------------------GCGGATGCATTAGCGCATGCGGATGT---------GCGTGC------------------------------------------------GGATGCT------------------------------------------------------------------------------------------------------------GATGCGGATGCGT----------------------------------------GGGC-----------------------------------------------------G--------------GATGCGGTTG-----TG----------------------------------------------------------------------------------------------------------------------GGTGGTGCAGGCCGGTTGGCAGGGCACCGACGCCAGCCA-
droEre2 scaffold_4690:10780126-10780270 - GC-GGCGGACAAGGAGCCGCTGTCCACCAAGATC-CACA----------AC-----------------------------------------TGCGTCG-----------------------------GC-A----TCAA--------------------------GGTGAGTGGCTAT--G-------------------------------------------------------------------------------------GGTATAGGTGTGGGTATGGGTATGGGTATGGGT----------------------------------------------------------------------------------------------------AT----------------GGGTATG--------------------------------------------------------------GGTACA-------------------------------------------------------------------GGTA-----------TGGGTATGG-------------------------------------------------------------------------------------------------------------------------------------GTTGTCGGCATGGGCAT-

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GGCAGCCAACA--------------------------CA----------GC-----------------------------------------AGCAACT---------GCGGCTGCAATTAGTCGACGGC-T----TAAA--------------------------GGTAAGTGG------------------------------------------------------------------------------------------------------------------------------------------CATG------TGGAAAA--CA-----------------CA------------------------------------------------------------------------TGG----------------------GCTGGG--TGCG-AA-TCCA--GGGGGAGAATATGTGATTGTGAAT------GTGAATGTGCCTGTGGAATCGGCTGCG-------------------------------TAGACATTAAGGCGTTTAATTGGGACTTGCGAGCTGGGTTTGGG-------------AGCA----CAAGTGCAGCCAAGCGACAGGCACAACGATTGATGGTGTG-----------------------------------AAT--------------GGCAGCAGCTGCG-AGTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................CA----------GC-----------------------------------------AGCAACT---------GCGGCTGCAATTAGTCGACGGC-T----TAAA--------------------------G........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3911.001000000000000000000000000000000000000000000010000000000000000000
...AGCCAACA--------------------------CA----------GC-----------------------------------------AGCAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501000100000000000000000000000000000000000000000000000000000000000
droMoj3
G-CAGCCAACA--------------------------CA----------GC-----------------------------------------GGCTACT---------GCGGCTGCAATTAGTCGACGGT-T----TAAA--------------------------GGTGAGTGG------------------------------------------------------------------------------------------------------------------------------------------CATG------CGGACAACTCA-----------------CGTGTGAGCAGTGGGTGGCCTGAACGCGGGATGTTCGGGTAGGGAAAGAGGAAGTACCTATGTGTGT-------GTG-----------------------------------------------------------A------GTGAGTGTGGCAATG-------------------A-------------------------------CAGACGTTAAGGCGTTTAATTTGGACTCCAGAGTTGGGATTGGG-------------AGCA----CAAGTGCAGCCAAGCGACAGCCCCAACGATTGATGGTGTG-----------------------------------AAT--------------CGTAGCAGCTGTG-TGCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GGCTGCAAACA--------------------------CA----------GC-----------------------------------------AGCAACT---------GCGGCTGCAATTAGTCGACGGC-T----CAAA--------------------------GGTGAGT----------------------------------------------------------------------------------------------------------------------------------------GTGGCATGTGTGTGTGGACAAAACA-----------------TATGCGAAT-----------------GGGGCAGGGCGAACAGCGTCAGGGGAA-------TGTGTAT-------CTG-----------------------------------------------------------A------ATGGGAATCCAAATGGGCAG-----------GGCA-------------------------------TACACATTAAGGCGTTTCATTGGAACTTGCGAGCGGGGATTGGGCTTGGGAAGCATAAGCACCGTCAAGTGCAACCAAGCGACAGGCACTACGATTGATGGTGTG-----------------------------------AAC--------------GCCAGCAGCTGTG-TGTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GGCGGCGGGTA--------------------------CA----------GC-----------------------------------------AGTGGCAGCGGGTACAGCAGTGGCA-----GCGGCGGC-G----GGTA--------------------------CAGCAGTGGCAGC--GGTG-----------------------------------------------------------------------------------------------------------------------------------------GTGGGTACAGCA-----------------GTGGCAGTG-----------------GCGGCGGGTCCAGCAGTGGCAGCGGGTGCAGCAGTGGCAGC-------GGCGGCGGG----------------------T--ACA--------------------------------------------------------------------------------------------------------GC----------------------------------------------------A----GTGGC-------AGCGGGTACAGCAGTGGCAGCGGGTGCAGCAGTGGCAGCGGCGGCAGGTACCGTAATGGATGCGAC--------------GGCAGCGGCGGCG-GGT-SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................C--GGTG-----------------------------------------------------------------------------------------------------------------------------------------GTGGGTACAGCA-----------------GTGGCAGT........................................................................................................................................................................................................................................................................................................................................................................................2550.20101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC-------AGCGGGTACAGCAGTGGCA...............................................................................21200.15303000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------------------T--ACA--------------------------------------------------------------------------------------------------------GC----------------------------------------------------A----GTGGC-------AGCGGGTA..........................................................................................21200.10202000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGCAGTGGCAGCGGGTGCAG.....................................................................23200.10202000
........................................................................................................TACAGCAGTGGCA-----GCGGCGGC-G----GGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
.............................................................................................................................................................................................................................................................................................................................................................................................CGGGTCCAGCAGTGGCAGCGG.............................................................................................................................................................................................................................................................................................................................................21200.05101000
........................................................................................................................................................................................................................................................................................................................................ACAGCA-----------------GTGGCAGTG-----------------GCGGCG................................................................................................................................................................................................................................................................................................................................................................21200.05100010
......................................................................................................................................................................................................................................................................................................................................GTACAGCA-----------------GTGGCAGTG-----------------GCGG..................................................................................................................................................................................................................................................................................................................................................................21200.05100010
..............................................................................................................................................................................................................................................................................................................................................................................................GGGTCCAGCAGTGGCAGCGGG............................................................................................................................................................................................................................................................................................................................................21200.05101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCGAC--------------GGCAGCGGCGGC......21200.05100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGATGCGAC--------------GGCAGCG...........20200.05101000
......................................................................................................................................................................................................................................................................................................................................GTACAGCA-----------------GTGGCAGTG-----------------GCGGC.................................................................................................................................................................................................................................................................................................................................................................22200.05100010
......................................................................................................................................................................................................................................................................................................................................GTACAGCA-----------------GTGGCAGTG-----------------GCG...................................................................................................................................................................................................................................................................................................................................................................20200.05100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTAATGGATGCGAC--------------GGCA..............20200.05101000
..............................................................................................TGGCAGCGGGTACAGCAGTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100100
.........................................................................................................................................GTA--------------------------CAGCAGTGGCAGC--GGTG-----------------------------------------------------------------------------------------------------------------------------------------G............................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGATGCGAC--------------GGCAGCGG..........21200.05100100
..............................................................................................................................................................................................................................................................................................................................................................................................GGGTCCAGCAGTGGCAGCGG.............................................................................................................................................................................................................................................................................................................................................20200.05101000
...............................................................................................................................................................................................................................................................................................................................................................................................GGTCCAGCAGTGGCAGCGGGT...........................................................................................................................................................................................................................................................................................................................................21200.05101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAATGGATGCGAC--------------GGCAGC............21200.05101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGATGCGAC--------------GGCAGCGGCGG.......24200.05100100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAC--------------GGCAGCGGCGGCG-GGT-20200.05101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATGCGAC--------------GGCAGCGGC.........21200.05100010
dp5
AGCAAAC-----------------------------------AGCATCAGC-----------------------------------------AACAGCA---------GCAA---CCCAAA---------ATCGCA----TCAAATTTTTAAACGGCAATACGCAAAGTAAGT----------------------------------------------------------------------------------------------------------------------------------------GAAGTGTAAATGAAAGGA-------------------------------------------------------------------------------------------AAGAAAA--------------------------------------------------------------AACGGGAAT------GGGAATGGGACT------------------------GAGGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
AGCAAAC-----------------------------------AGCATCAGC-----------------------------------------AACAGCA---------GCAA---CCCAAA---------ATCGCA----TCAAATTTTTAAACGGCAATACGCAAAGTAAGT----------------------------------------------------------------------------------------------------------------------------------------GAAGTGTAAATGAAAGGA-------------------------------------------------------------------------------------------GAGAAAA--------------------------------------------------------------AACGGGAAT------GGGAATGGGACT------------------------GAGGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
ACCAAAA-----------------------------------AGCAACAGC-----------------------------------------AACATTA---------GCGGCAACAGCAGTTTGAAAAC-T----TG--------------------------------------------------------------CGCATTTGTTGTCTCTC--------------GTGAAAGTATGAGGGTGTGAGAGTGT---------GTGTGT------------------------------------------------GA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT----GTTAGAGTGCGGGTGCGTTTG-----TG----------------------------------------------------------------------------------------------------------------------AGCG-------------------------------CGGC-SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TGCAACCG------------------------------------CAGCACC-----------------------------------------ATCAGCA---------GCAA---CACAAT---------GCC----A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA------------------------------------------------------------------------AGTGAATGATATAGTCAGTACATGGGCTGGAACTATG-GA-TCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGG-SizeHit CountTotal NormTotal
No Reads
droKik1
AACAGGTTACA--------------------------CA----------TC-----------------------------------------CGCAGCA---------GCAGCAGCAGCCGGTCGTCTACGCC----AGCTGCAAGCTCCAAGCGGCAGTCGGTAACCTGGGC----------------------------------------------------------------------------------------------------------------------------------------CTGGT--------------------------------------------------------------------------------------------------------------------------------------------------------GCCC--GAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG--------------------------------GGA-SizeHit CountTotal NormTotal
No Reads
droFic1
AGCAGCAG------------------------------------------C-----------------------------------------AACATCA---------GCAGCTGAGACTGATTGT-------------------------------------------------------GGTTGGGTA-------------------------------------------------------------------------------------TGTGGA-------------------TGTGGAGTTGGAGTTGGAGTTGAAGT----------------------CGA-------------------------------------------------------------------GGATGAG--------------------------------------------------------------GATGAGGAT------GTGGATGTGGTT------------------------AGTGGAT----GTCCGTGTGCGTAGACGTTCA-----TT---------------------------------------------------------------------------------------------------------------------AATTG-------------------------------TGAC-SizeHit CountTotal NormTotal
No Reads
droEle1
AACAGCCA------------------------------------CAGCAGC-----------------------------------------AACATCA---------GCAGCTGAGACTGATTGT-------------------------------------------------------GGTCGGGTA-------------------------------------------------------------------------------------TG-------------------------TG-----------------------------------------------------------------------------------------------------------------------GA--------------------------------------------------------------GTTGAGGAT------GTGGATGTGGTT------------------------AGTGGAT----GTCCGTGTGCGTAGACGTTCA-----TT---------------------------------------------------------------------------------------------------------------------AATTG-------------------------------TGAC-SizeHit CountTotal NormTotal
No Reads
droRho1
AGCAACAGGTG--------------------------CA----------AC-----------------------------------------ACCAGCA---------GCAGCAGCAGATCGCTCAGGAT-C----CAGCAGCA--------------------------AGTGC----CT---------T------------------------------------------------------------------------------------------------------------------------------------CGAGGAG--CA-----------------CC------------------------------------------------------------------------AGCGATTGG----------------------T--GCAGCAG-CAATTGGGCGCGAACACGCCGCTTCGC------ATCT--TTGTGCCCGACGAAGAGGCTTCCGAGTCGGTGAGTCC--------------------A-----------TACATAATA-------------------------------------------------------------------------------------------------------------------------------------ATTAGCAAACTAAGTTT-SizeHit CountTotal NormTotal
No Reads
droBia1
AGCAACAGGTG--------------------------CA----------GC-----------------------------------------AGCAGCA---------GCAA---CAAGTTGCACAGGAC-C----CAGCAGCA--------------------------AGTGC----CT---------T------------------------------------------------------------------------------------------------------------------------------------CGAGGAG--CA-----------------CC------------------------------------------------------------------------AGCGACTGG----------------------T--GCAGCAG-CAATTGGGCGCCAATACGCCACTTCGC------ATCT--TTGTGCCCGACGAGGAGGCCGCCGAATCGGTAAGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GGTGGTCCTGA----------TTCCGG--GGATCA--TGT--TGCA---AC-----------------------------------------ATCGTCATC------AGCAGCAGCAGCGGCGGCA--GC-A----ACAG--------------------------CGACATT--------GGCG-------------------------GGATCCTCCGGGATTTACGGTGCAGACG---------------ATGCAGGTGCGGGTGTTGCTAGTGGCGGTGTCGGTGTTGGTGTTGGT----------------------------------------------------------------------------------------------------GGTATTAGCAGTGCGATT-------AGCGGTGGA----------------------T--TTA------------------------------------------------------------------------------------------------------------------------------------------------------------GCG----GTGGTGCGGCTGAGCCGCAACAGCAGCAACAGGTGGTGTC-----------------------------------G-C--------------AGCAGCAGCAGTTGCAA-SizeHit CountTotal NormTotal
No Reads
droEug1
AACAGGTGACA--------------------------CA-TCCGCAGCAGC-----------------------------------------AACAGCA---------GCAG---CCAGTGGTCTACG---CC----AGCTGCAAGTTGCAGGCGGCCGTCGGCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGGG--CATG-GT-TCCT--GAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC-------------------------------GGAT-SizeHit CountTotal NormTotal
No Reads
dm3
GCCAGCAAAAG--------------------------CA----------GC-----------------------------------------AACATCA---------GCAGCTGAGACTGATTGT-------------------------------------------------------GGTCGGGTAT---------TG------------------------------------------------------GGT---------------------A-------------------TATGG--------AGT-----TGGGT--------ATTGGGCATGGGGATGT-------------------------------------------------------------------GAATGTG--------------------------------------------------------------GATGAGGAT------GTGGATGTGGTT------------------------AGTGGATGGATGTCCGTGTGCGTAGACGTTCA-----TT---------------------------------------------------------------------------------------------------------------------AATTG-------------------------------TGAC-SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................GTG--------------------------------------------------------------GATGAGGAT------GTGGATGTGGTT------------------------A....................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GTG--------------------------------------------------------------GATGAGGAT------GTGGATGTGGTT------------------------.....................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000100000010000000000000100
...........................................................................................................................................................................................................................................................................................................................................................ATGT-------------------------------------------------------------------GAATGTG--------------------------------------------------------------GATGAGGAT------G........................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................A-------------------TATGG--------AGT-----TGGGT--------ATTGGGC..........................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000001000000
...........................................................................................................................................................................................................................................................................................................................T-----TGGGT--------ATTGGGCATGGGGA...................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100
..............................................................................................................................................................................................................................................................................................................TGG--------AGT-----TGGGT--------ATTGGGC..........................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGATGGATGTCCGTG...................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................TATGG--------AGT-----TGGGT--------ATTGGG...........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................GCATGGGGATGT-------------------------------------------------------------------GAATGTG--------------------------------------------------------------G.......................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGGATGTCCGTGTGCGT..............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TGTG--------------------------------------------------------------GATGAGGAT------GTGGATGTGGT..............................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...............................................................................................................GCTGAGACTGATTGT-------------------------------------------------------GGTCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAT------GTGGATGTGGTT------------------------AGTGGAT..............................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.......................................................................................................................TGATTGT-------------------------------------------------------GGTCGGGTAT---------TG------------------------------------------------------GGT---------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................GTG--------------------------------------------------------------GATGAGGAT------GTGGATGTGGT..............................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT------GTGGATGTGGTT------------------------AGTGGA...............................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
............................................................................................................................................................................................TAT---------TG------------------------------------------------------GGT---------------------A-------------------TATGG--------AGT-----TGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
..............................................................................................................................................................................................................................................................................................................................................ATTGGGCATGGGGATGT-------------------------------------------------------------------G............................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
..............................................................................................................................................................................................T---------TG------------------------------------------------------GGT---------------------A-------------------TATGG--------AGT-----TGGGT--------AT...............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGGTT------------------------AGTGGATGGATGTCCGT....................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGATGGATGTCCGTGT..................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT------GTGGATGTGGTT------------------------AGTGGG...............................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGATGGATGTCCGTGTGCG...............................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................ATGG--------AGT-----TGGGT--------ATTGGGCATGGGGAT..................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
................................................................................................................................................................................................................................................................................................................................................TGGGCATGGGGATGT-------------------------------------------------------------------GAATGT.......................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTGTGCGTAGACGTTC......................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTG--------------------------------------------------------------GATGAGGAT------GTGGATG..................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAT------GTGGATGTGGTT------------------------AGTGGATG.............................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
..............................................................................................................................................................................................T---------TG------------------------------------------------------GGT---------------------A-------------------TATGG--------AGT-----TGGGT--------A................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................GGCATGGGGATGT-------------------------------------------------------------------GAATGTG--------------------------------------------------------------G.......................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTT------------------------AGTGGATGGATGTCCGTGTGCG...............................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGTCCGTGTGCGTAGAC..........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTT------------------------AGTGGATGGATGTCCGTG...................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................ATTGGGCATGGGGATGT-------------------------------------------------------------------GAATGTG--------------------------------------------------------------G.......................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT------GTGGATGTGGTT------------------------AGTGGAT..............................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.............................................................................................................................................................................................................................................................................................................ATGG--------AGT-----TGGGT--------ATTGGGCATGGGGA...................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGTGGTT------------------------AGTGGATGG............................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTG--------------------------------------------------------------GATGAGGAT------GTGT.....................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTG--------------------------------------------------------------GATGAGGAT------GTGGATG..................................................................................................................................................................................................................................2170.4330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................T---------TG------------------------------------------------------GGT---------------------A-------------------TATGG--------AGT-----TTC...........................................................................................................................................................................................................................................................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTG--------------------------------------------------------------GATGAGGAT------GTGG.....................................................................................................................................................................................................................................1890.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
droSim2
GGCATAG-----------------------------------TGCTGTTGCATGGCCGCCGCATATTGGGCCACGTTTAACCCATTGCC---GCCGGCG---------GTGG-------------------------------------------------------------------GT---------GGAAAGTGCCCCAGCTTGCCGT-------------------GCGGATGCATTAGCGCATGCGGATGT---------GTGTGC------------------------------------------------GG------------------------------------------------------------------------------------------------------------------------ATGCGT----------------------------------------GGGC-----------------------------------------------------G--------------GATGCGGTTG-----TG--------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
AGCAACAG------------------------------------CAGCAGC-----------------------------------------AGCAGCA---------ACAGATGAA------------------------------------CAGCAGTCGGCAGAGTCA-----------------------------CA-----------------------------------------------------------------------------AT----------------------------GACATGTGCCGGCAAGT--------GGTCACCACGCCAATGG-------------------------------------------------------------------GCATGCA-----------------------------------------GCTC--AAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG-------------------------------GAGA-SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................AGCA---------ACAGATGAA------------------------------------CAGCAGTCGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000
.................................................................................................................TGAA------------------------------------CAGCAGTCGGCAGAGTCA-----------------------------CA-----------------------------------------------------------------------------AT----------------------------GA........................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100
............................................................................................AGCAGCA---------ACAGATGAA------------------------------------CAGCAGTCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
................................................................................................GCA---------ACAGATGAA------------------------------------CAGCAGTCGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
.................................................................................................CA---------ACAGATGAA------------------------------------CAGCAGTCGGCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
.................................................................................................CA---------ACAGATGAA------------------------------------CAGCAGTCGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
..................................................................................................A---------ACAGATGAA------------------------------------CAGCAGTCGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
..................................................................................................................GAA------------------------------------CAGCAGTCGGCAGAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100
...............................................................................................................GATGAA------------------------------------CAGCAGTCGGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100
...............................................................................................AGCA---------ACAGATGAA------------------------------------CAGCAGTCGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
.....................................................................................................................................................................................................................................................................................................................GACATGTGCCGGCAAGT--------GGTCACC..........................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000
droYak3
GGCATAG-----------------------------------TGCTGTTGCATGGCCGCCGCATATTGGGCCACGTTTAACCCATTGCCGCCGGCGGCG---------GTGG------GTGGAAAGTGGC-C----CA-----------------------------------------------------------------GCTTGCCGT-------------------GCGGATGCATTAGCGCATGCGGATGT---------GCGTGC------------------------------------------------GGATGCT------------------------------------------------------------------------------------------------------------GATGCGGATGCGT----------------------------------------GGGC-----------------------------------------------------G--------------GATGCGGTTG-----TG----------------------------------------------------------------------------------------------------------------------GGTGGTGCAGGCCGGTTGGCAGGGCACCGACGCCAGCCA-SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GC-GGCGGACAAGGAGCCGCTGTCCACCAAGATC-CACA----------AC-----------------------------------------TGCGTCG-----------------------------GC-A----TCAA--------------------------GGTGAGTGGCTAT--G-------------------------------------------------------------------------------------GGTATAGGTGTGGGTATGGGTATGGGTATGGGT----------------------------------------------------------------------------------------------------AT----------------GGGTATG--------------------------------------------------------------GGTACA-------------------------------------------------------------------GGTA-----------TGGGTATGG-------------------------------------------------------------------------------------------------------------------------------------GTTGTCGGCATGGGCAT-SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................................................................................................................................................ATGGGTATGGGT----------------------------------------------------------------------------------------------------AT----------------GGGTATG--------------------------------------------------------------GG......................................................................................................................................................................................................................................................23200.0510000010
..........................................................................................................................................................................................................................................................................................ATGGGTATGGGTATGGGT----------------------------------------------------------------------------------------------------AT----------------GGG..........................................................................................................................................................................................................................................................................................................................23200.0510000010

Generated: 05/16/2015 at 08:05 PM