ID:

dvi_550

 Coordinate:

scaffold_10322:222975-223125 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dvir_GLEANR_16503:3]; CDS [Dvir\GJ16082-cds]; intron [Dvir\GJ16082-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTGAAGGCGTCTAGCTGTGTGCCGCATCTAGCGGAACGCAAATCCAAAAACTGTTTTTCATATCCATTGCAATTTTTATCCAACCGATAACTCAGCTTGATATTTGACAGATACATTCACCAGCTGGCACCATGTAAATGCCTTATACCCCATACTCTGACACAATGTTTCTTATATTATTTTTTGTCTCTCGCCTGCAGATTCATAACTCGGACGCCGCGCTCCGGCAGCCGTCAAAGTGCAGGCCACT
**************************************************.(((((....(((((....((.....(((((.....)))))....))..)))))..)))))............((.(((..(((....)))..................((((.((((..........))))...))))....))).))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M028
head
 M061
embryo
 SRR060655
9x160_testes_total
 SRR060663
160_0-2h_embryos_total
 SRR060669
160x9_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060677
Argx9_ovaries_total
 V053
head
 V047
embryo
.....................................................................................................................................................................................................................................AGCCGTCAAAGTGCAGGCC... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CATAACTCGGACGCCGCGCTC.......................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GCGCTCCGGCAGCCGTCAAA............ 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................CGCCGCGCTCCGGCAGCCGTCA.............. 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................GCACGCAGATTCATAACTCGGA.................................... 22 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................CGGACGCCGCGCTCCGGCAGCC.................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................AACGCAAATCCAAAAACTGT.................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................AACGCAAATCCAAAAACTGC.................................................................................................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................ACTCGGACGCCGCGCTCCGGCAGCC.................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ATAACTCGGACGCCGCGCTCCGGC...................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.....AGGCGTCTAGCTGTGTGCCG.................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
....AAGGCGGCTAGCTTTGTGCC................................................................................................................................................................................................................................... 20 2 2 0.50 1 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................TCGGGCATCCGTCATAGTGCA....... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................GACTTCTACCCCATACTCTT........................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 1
...................................................................................................................................................................................................................................GAAGGCGTCAAAATGCAGGC.... 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AAACTTCCGCAGATCGACACACGGCGTAGATCGCCTTGCGTTTAGGTTTTTGACAAAAAGTATAGGTAACGTTAAAAATAGGTTGGCTATTGAGTCGAACTATAAACTGTCTATGTAAGTGGTCGACCGTGGTACATTTACGGAATATGGGGTATGAGACTGTGTTACAAAGAATATAATAAAAAACAGAGAGCGGACGTCTAAGTATTGAGCCTGCGGCGCGAGGCCGTCGGCAGTTTCACGTCCGGTGA
**************************************************.(((((....(((((....((.....(((((.....)))))....))..)))))..)))))............((.(((..(((....)))..................((((.((((..........))))...))))....))).))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M027
male body		 SRR1106729
mixed whole adult body
 GSM1528803
follicle cells		 SRR1106726
embryo_14-16h
 SRR060682
9x140_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 M028
head
 SRR060664
9_males_carcasses_total
 SRR060666
160_males_carcasses_total
..................................................................................................................CCAAGTGGTCGACCGTAGTA..................................................................................................................... 20 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................GGGGTCTGCGACTGTGGTAC................................................................................... 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CTAAGAATTGAGGCTCCGG................................ 19 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0
............................................................................................AGTCGAACTATATACTGTGG........................................................................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................AAAAACAGAGAGCCCAGGTC.................................................. 20 3 12 0.08 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................GTCTGAGTCTTAAGCCTGC.................................. 19 3 12 0.08 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................ACCGAGGGACATTTAAGGA........................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................TAAAAAACAGAGAGGGGC...................................................... 18 2 15 0.07 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................CAAGTGGTCGACCGTAGTAA.................................................................................................................... 20 3 16 0.06 1 0 0 0 0 0 0 0 1 0 0
.....................................................................................GCTATCGAGCCAAACTATA................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0
......................................................................................................................................CATTAACGTAATATGGAGT.................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................................CTAAGAATTGAGGCTG................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................GTGGAACTATGAACTG.............................................................................................................................................. 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_10322:222925-223175 + dvi_550 TTTGAAGGCGT---CTAGCTGTGTGCC-GCAT----CTAGCGGAACGCA--AA-TC------------------CAA---AAACTGT----------------TTTT------------------CATA--------TCC------ATTGCA---------------------------------------------------------------------------------------------------------------------------ATTTTT--------ATCCAACCGATAACTCAGCTTGATATTTGACAGATACATTCACC----------------------------------------------------AGC-TGGCACCATGTAA----AT----------------------------------------GCCTTA-----TA----------------CCCC----------------------ATACT------------------------------------CTGACACAATGT----------------------------------------------TTCTTATATT-A-TTTT-----TTGTC----TCTC-G---CCTGCAGATTCATAACTCGGACGCCGCGCTCCGGCAGCCGTCAAAGT---GCAG---GCCACT
droMoj3 scaffold_6680:2271137-2271389 + TTTGAAGGCGT---CTAGC--TGTGCC-GCAT----CTAGCGGAACTCA--A----------------------CGA---AAAAT--A---------------CG---GTTTCTATCTTTCTCTTCATT--------TCC------TTGGAAAATTTTGTAGTTAACTTGAGTTAGCCGCGTTAACA--------------------------------------------------------------------------------------------------------------------------------------ATTACAGTTACA----------------------------------------------------AGT-TG-------------------------------------------------------------------------------C-----------------------------------------------------------------------------------------------T----CGTAAGCTAGACGATCCTTTTCACACTTTTTTATTTATATTTATTTTATAT-ATTTTCT---TTG------CCTGCAGATTCATAACTCGAACACCGCGTTCCGGCAGTCGTCAAAGT---GCTG---GCCACT
droGri2 scaffold_15110:285159-285432 - TTTGAAGGCGTCGACTAGC--AGAGCCCGCATATCTCTATCGGAAACAA--A---C------------------CGA---AAACTCGA---------------GCCCGAAAACTATTTTT-----CATT--------TC-----ACCTTGCA---------------------------------------------------------------------------------------------------------------------------ATTTCCGATCAGAT--AC--AT-TTT-------------------------------------GCGCGT--------GTGT-------GCT---TAAAAAAGCTTCAACTATTTAAACACCATGTAA----ATCA----------------------ATCTAAA--GCA-AACAATTTA-----AT----------------TGTG----------------------ACATT-------------------------------------TA----------------TTCGAATATCTTAC-------------------------------------------AC-A------------TCTTTTGCCGCAGATTCATAAGTCGCACCCCACGCTCGAGTAGCCGTCAGAG---CGCTG---GCCACT
droWil2 scf2_1100000004510:852368-852460 + TCTCCACCCAC---CA------------------------------------------------------------C---AATATATA---------------TGCT------------------TGAA--------ACT-TCTGCT-----------------------------T------GTAAAGT-------TC---------------------------------TTCTATT-TTTGTGT----TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT-----TTGTC----TTTC----TCCTGGAAAGTCATA-------------------------------------------------
dp5 XR_group6:12406887-12407166 + TCTGCTG--------------TGTGCC-GCAT----CTAGCGGATCC-------AC------------------CAA---AAGT---A---------------TCTC------------------------------------G-----------------------------------CGCTAACGAAAAGATACAGA--A----------------------------------------------------------------------------------TATTT--ACAT---------------------------------TTACCGCCTGCCGCGT--------GTGT-------GCC-------------------GCT-CTCTTCCGTGTAA----CTAATTTTTTTTTTTCTTTT---CTGA-TTAACT--G----------------------AAATGGATAC-------------------------------------------------------AAACGCTTCTTGTTTCTTGCCACTGAACG-A-ACTAA----TGTGCC--------TCCCTCTCGCCCTCC-----------------------------T---CCGCCC--TTCTGCAGATTCATAACGCGCACCACACGCTCCCACAGTCGCCAGGGATCCACTGGTGGCCATC
droPer2 scaffold_33:428028-428308 + TCTGCTG--------------TGTGCC-GCAT----CTAGCGGATCC-------AC------------------CAA---AAGT---A---------------TCTC------------------------------------G-----------------------------------CGCTAACGAAAAGATACAGA--A----------------------------------------------------------------------------------TATTT--ACAT---------------------------------TTACCGCCTGCCGCGT--------GTGT-------GCC-------------------GCT-CTCTTCCGTGTAA----CTAATTTTT--TTTTCTTTTCCTCTGA-TTAACT--G----------------------AAATGGATAC-------------------------------------------------------AAACGCTTCTTGTTTCTTGCCACTGAACG-A-ACTAA----TGTGCC--------TCCCTCTCGCCCTCC-----------------------------T---CCGCCC--TTCTGCAGATTCATAACGCGCACCACACGCTCCCACAGTCGCCAGGGATCCACTGGAGGCCATC
droAna3 scaffold_13337:478325-478622 + TTTGTTGCCGT---CTAGC--TGTGCC-GCAT----CTAGCGGAACT-------GT------------------CGA---T-TTTGTA---------------TCTC------------------CGGA--------TCT-CA-------------------------------------------------------G--ACATCCGATT-----GACGATTCGATTG-TGTTTTGTT-TTGGTTCTTGTTCAGCCGTAGCAGTACCCGTAGCAGTTGTT--------CGACATTCGCTGCCG-------------------------------CAG------C--A--G------TCGCGTTTTCCCCAGA----------------AAGCCCCGTGTAAA---TTGA----------------------A-GCAGTTATGA-AA---------------------TGGATAC-------------------------------------------------------A---------------------GCCAA-G-T-AACA--GTATCTAAT-------------------------------------------CC-A------------CCA---TTCGCAGATTCATAACGCGCACCACCCGCTCCGCCAGTCGCCAGGGCTCCGCCG---GCCACT
droBip1 scf7180000395155:280766-281064 - TTTGCTGCCGT---CTAGC--TGTGCC-GCAT----CTAGCGGAACT-------GT------------------CGA---C-TTTGTA---------------TCTC------------------CGGA--------TCG-C-------------------------------------------------------AG--ATACCCGATT-----GACGATTTTATTG-TGTTTTGTT-TTGGTTCTTGTTCAGCCGTA------------GCAGTTGTT--------CAACATTTGCTGCCG-------------------------------CAG------C--A--G------TCGCGTTTTCCCCAGAAGAGTCC--CCCGCC-CCGCCCCGTGTAA----TTTA----------------------A-TGCAGCTATG---------------------AAATGGATAC-------------------------------------------------------A---------------------GCCAA-G-T-AACA--GTATCTAAT-------------------------------------------CC-A------------CCA---TTCGCAGATTCATAACGCGCACCACCCGCTCCGCCAGTCGCCAGGGCTCCGCCG---GCCACT
droKik1 scf7180000302441:1311097-1311361 - TTTGCTGCCGT---CTAGC--CGTGCC-GCCT----CTAGCGGATGT-------ATCTCTTTTCGTAATTCTCTGTT---C-CGTGTA---------------TCTT------------------T----------------CCATC-----------------------------T------GCCGGAT----C--GTATATCTCGTTTT-------------GGCTG-TGTTCTTT--TTGG-----------------------------------------------------------------------------------------------CATGT--------GTG-------TGTT-------------------GTTTTGTTGCCGTGAAAA---TTAA----------------------A-TTAAA---------TGCTTA-----TGACTTAAAAAGAAAT-------------------------------------------------------A-----------------------AAAC--T--AT-A----AGTAAT-------------------------------------------CG-A-----A-TGTCGC-C---TTCGCAGATTTATAACGCGCACCACACGCTCCGCCAGTCGCCAGAGTTCCGCCG---GACACT
droFic1 scf7180000454105:766277-766524 + TTTGCTGCCGT---CTAGC--CGTGCC-GCAT----TTAGCGGAACT-------CC------------------AGA---GAGTTGTACTCGAATGAAATATATCTC------------------T------------------------------------------------------------------------GATATCTC---------------------TG--ATTTTGTT-TTGGTGT----TCT---------------------------GATACTTC-G--ATTT-C-GCCT-------------------------------TGGC-----CACCGCTTGTTATTTCCGTG-------------------------TGTTTCCGTGTAA----ACAA----------------------A-TC-----------------------------------------------------------------------------------------------------------------CCAGCCGA-G-T-AATAC----TGTAAT-------------------------------------------CC-----------CCGC-C---TCCGCAGATTCATAACGCGCACCACGCGCTCCGCCAGTCGCCAGAGTTCCGCCG---GACACT
droEle1 scf7180000491249:2980138-2980431 - TTTGCTGCCGT---CTAGC--CGTGCC-GCAT----TTAGCGGAACT-------CT------------------CGCATCGAGTTGTA---------------TCTT------------------TGTA--------TCTTTCTATC-----------------------------T------GACGGAT----CTTGG--ATCTCGTTTCCC------------------GTTTTGTT-TTGGTGTGTGTTC----------------------------------------------TACCT-------------------------------CCT------C-----A------TCGCGTGTT-----------------------TATTTCCGTGTAAATATCTAA----------------------A-TTAACT-AAA-TACTGCTTA-----TGG------------------------------------------------CAAATCCCCCCATAGAAGAA--------------GTG----AACAAA-A-TAAATAA----AGTAAT-------------------------------------------CT-A-----AAAAACGC-C---TTCGCAGATTCATAACGCGCACCACGCGCTCTGCCAGTCGCCAAAGTTCCGCCG---GACACT
droRho1 scf7180000780275:117163-117429 + TTTGCTGCCGT---CTAGC--CGTGCC-GCAT----TTAGCGGAACT-------CT------------------CGA---GAGTTGTA---------------TCTT------------------TGTA--------TCT-------------------------------------------GTCGGAT----CTGGG--ATCTCGTTTCCC------------------GTTTTGTTTTTGGTGT----TCT--------------------------------------------CTGCTG----------------------------------------------A------TCGCGTGTT-----------------------TATTTCCGTGTAAA--TCTAA----------------------A-TTAACT-AAA-TACTGTTTA-----TGG------------------------------------------------CAAATCCCGC------AGAA---------------------ATCAAATAGTAAATGA----AGTAAT-------------------------------------------CCGA-----A---CCGC-C---TTCGCAGATTCATAACGCGCACCACGCGCTCCGCCAGTCGCCAGAGTTCCGCCG---GACACT
droBia1 scf7180000302428:9204364-9204671 + TTTGCTGCCGT---CTAGC--CGTGCC-GCAT----TTAGCGGAACTCC--ACTCT------------------CG-----AATTGTA---------------TCTC------------------TGTATCTCTGTATCTTTGTATC-----------------------------T--CGCAGCCGTTT-------GGATATCTCGTTTCGCAGC--------CACGGCTATTTTGTT-TTGGTGT----TCT---------------------------GATCATAC--ACATTT-CTGCTC-------------------------------CAGCCG---C-----G------TCGCGTGTT-----------------------CATTTCCGTGTAA----CTAA----------------------A-TTAATTTAGAAAACCATTT-------G----------------TGCG----------------------AAGT---------------------------------------G-------AAATA-T-AATTG----AGTAAT-------------------------------------------CC-G-----AAACACGC-C---TTCGCAGATTCATAACGCGCACCACGCGCTCCGCCAGTCGCCAGAGTTCCGCCG---GACACT
droTak1 scf7180000415857:186420-186707 + TTTGCTGCCGT---CTAGC--CGTGCC-GCAT----TTAGCGGAACTCCGAACTCT-------CGAAAATATCTCGA---A-ATTGTA---------------TCTT------------------TGTA--------TCT-C-----------------------------------------GTCG-----------CATATCTCGTTTTGAAGC-----TA-GACAACTATTTTGTT-TTGGTGT----TCT---------------------------GAT------------------------------------------------------------C-----A------TCGCGTGTT-----------------------CATTTCCGTGTAA----CTAA----------------------A-TTAATTTATA-AACTGTATA--------------------CAATGTGAAGATAAATATATTATAATTAAGAGTT-------------------------------------AAAA-----------------------------------------------------------------------CC-A-----A-AAACGC-C---TTCGCAGATTCATAACGCGCACCACGCGTTCCGCCAGTCGCCAAAGTTCCGCCG---GACATT
droEug1 scf7180000409466:169211-169496 + TTTGCTGCCGT---CTAGC--CGTGCC-GCAT----TTAGCGGAACT-------CT------------------CGA---GAGTTGTA---------------TCTT------------------TGTA--------TCT-------------------------------------------GTCGGAT-------GGATATCTCGTTTCACAGC--------AACTG-TATTTTGTT-TTGGTGT----TCT---------------------------GTTCA---------TT-CTGCCG-------------------------TCC---CAG------C--T--G------TCGCGTGTT-----------------------TATTTCCGTGTAA----CTAA----------------------ACTTAAT--ACA-AACTGCTTA-----GT----------------TGGG----------------------GAGTTAAC-------------------A---------------AAGCCAGCAAA-G-T-AATAA----AGCAAT-------------------------------------------CC-A-----C---CCGC-C---TCCGCAGATTCATAACGCGCACCACGCGCTCCGCCAGTCGCCAGAGTTCCGCCG---GACACT
dm3 chr3L:2439256-2439551 + TTTGCTGCCGT---CTAGC--CGTGCC-GCAT----TTAGCGGAACT-------CT------------------CGA---GAGTTGTA---------------TCTT------------------TGTA--------TCT-GCGATC-----------------------------T------GTCGAAT-------GGATATCTCGTTTCACAGC--------GACTG-TATTTTGTT-TCGGTGT----TCT---------------------------GATAC---------TT-CTGCTG-------------------------------CAG------C-----GTGTTTATTGCGTGTT-----------------------TATTTCCGTGTAA----CTAA----------------------A-TTAATTTAGAAAACGGCTTA-----TG----------------TTGG----------------------GAGTT------------------------------------TTGAGCCAACAAATA-T-AATAA----CGTAAT-------------------------------------------CC-A-----A---CCGC-C---TCCGCAGATTCATAACGCGCACCACGCGTTCCGCCAGTCGCCAGAGTTCCGCCG---GACACT
droSim2 3l:2336044-2336331 + TTTGCTGCCGT---CTAGC--CGTGCC-GCAT----TTAGCGGAACT-------CT------------------CGA---GAGTTGTA---------------TCTT------------------TGTA--------TCT-GCGATT-----------------------------T------GTCGAAT-------GGATATCTCGTTTCACAGC--------GACTG-TATTTTGTT-TCGGTGT----TCT---------------------------GATAC---------TT-CTGCTG-------------------------------CAG------C-----G------TCGCGTGTT-----------------------TATTTCCGTGTAA----CTAA----------------------A-TTAATTTAGA-AACCGCTTA-----TG----------------TGGG----------------------GAGTT-------------------------------------CGAGCCAGCAAATA-T-AATAA----CGTAAT-------------------------------------------CC-A-----A---CCGC-C---TCCGCAGATTCATAACGCGCACCACGCGTTCCGCCAGTCGCCAGAGCTCCGCCG---GACACT
droSec2 scaffold_2:2470262-2470558 + TTTGCTGCCGT---CTAGC--CGTGCC-GCAT----TTAGCGGAACT-------CT------------------CGA---GAGTTGTA---------------TCTT------------------TGTA--------TCT-GCGATT-----------------------------T------GTCGAAT-------GGATATCTCGTTTCACAGC--------GACTG-TATTTTGTT-TCGGTGT----TCT---------------------------GATACTTCTGATACTT-CTGCTG-------------------------------CAG------C-----G------TTGCGTGTT-----------------------TATTTCCGTGTAA----CTAA----------------------A-TTAATTTAGA-AACCGCTTA-----TG----------------TGGG----------------------GAGTT-------------------------------------CGAGCCAACAAATA-T-AATAA----CGTAGT-------------------------------------------CC-A-----A---CCGC-C---TCCGCAGATTCATAACGCGCACCACGCGTTCCGCCAGTCGCCAGAGTTCCGCCG---GACACT
droYak3 3L:9495186-9495478 - TTTGCTGCCGT---CTAGC--CGTGCC-GCAT----TTAGCGGAACT-------CT------------------CAA---GAGTTGTA---------------TCTT------------------TGTA--------TCT-CCGATC-----------------------------T------GTCGAAT-------GGATATCTCGTTTCACAGC--------GATCG-TATTTTGTT-TCGCTGT----TCT---------------------------GATAT---------TT-CTACTG-------------------------------CAG------C-----G------TCGCGTGTT-----------------------TATTTCCGTGTAA----CTAA----------------------A-TTAATTTAGA-AACCGCTTAATGTGTG----------------TGTG----------------------GAGTT-------------------------------------TGTGCCAGCAAATA-T-AATAA----AGTAAT-------------------------------------------CC-A-----A---CCGC-C---TCCGCAGATTCATAACGCGCACCACGCGTTCCGCCAGTCGCCAGAGTTCCGCCG---GACACT
droEre2 scaffold_4784:2455203-2455489 + der_698 TTTGCTGCCGT---CTAGC--CGTGCC-GCAT----TTAGCGGAACT-------CT------------------CGA---GAGTTGTA---------------TCTT------------------TGTA--------TCT-GCGATC-----------------------------T------GTCGGAT-------GGATATCTCATTTCACAGC--------GACTG-TATTTTGTT-TCGCTGT----TCT---------------------------GATAT---------TT-CTGCTG-------------------------------TAA------C-----G------TCGCGTGTT-----------------------TATTTCCGTGTAA----CTAA----------------------A-TTAGTTTAGA-AACCGCTTA-----AG----------------TGGG----------------------GAGTT-------------------------------------TG-GCCAGCAAATA-T-AATAA----AGTAAT-------------------------------------------CC-A-----A---CCGC-C---TCCGCAGATTCATAACGCGCACCACGCGTTCCGCCAGTCGCCAGAGTTCCGCCG---GACACT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TTTGAAGGCGT---CTAGCTGTGTGCC-GCAT----CTAGCGGAACGCA--AA-TC------------------CAA---AAACTGT----------------TTTT------------------CATA--------TCC------ATTGCA---------------------------------------------------------------------------------------------------------------------------ATTTTT--------ATCCAACCGATAACTCAGCTTGATATTTGACAGATACATTCACC----------------------------------------------------AGC-TGGCACCATGTAA----AT----------------------------------------GCCTTA-----TA----------------CCCC----------------------ATACT------------------------------------CTGACACAATGT----------------------------------------------TTCTTATATT-A-TTTT-----TTGTC----TCTC-G---CCTGCAGATTCATAACTCGGACGCCGCGCTCCGGCAGCCGTCAAAGT---GCAG---GCCACTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGTCAAAGT---GCAG---GCC...1911.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAACTCGGACGCCGCGCTC................................2111.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCTCCGGCAGCCGTCAAA..................2011.001000000000000000000010000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGCGCTCCGGCAGCCGTCA....................2211.001000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGACGCCGCGCTCCGGCAGCC........................2211.001001000000000000000000000000000000000000000000000000000000000000
...........................................AACGCA--AA-TC------------------CAA---AAACTGT----------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000000000000000000000000000000000000000000000000000000000000
...........................................AACGCA--AA-TC------------------CAA---AAACTGC----------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGGACGCCGCGCTCCGGCAGCC........................2511.001000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACTCGGACGCCGCGCTCCGGC............................2411.001000001000000000000000000000000000000000000000000000000000000000
.....AGGCGT---CTAGCTGTGTGCC-G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000100000000000000000000000000000000000
droMoj3
TTTGAAGGCGT---CTAGC--TGTGCC-GCAT----CTAGCGGAACTCA--A----------------------CGA---AAAAT--A---------------CG---GTTTCTATCTTTCTCTTCATT--------TCC------TTGGAAAATTTTGTAGTTAACTTGAGTTAGCCGCGTTAACA--------------------------------------------------------------------------------------------------------------------------------------ATTACAGTTACA----------------------------------------------------AGT-TG-------------------------------------------------------------------------------C-----------------------------------------------------------------------------------------------T----CGTAAGCTAGACGATCCTTTTCACACTTTTTTATTTATATTTATTTTATAT-ATTTTCT---TTG------CCTGCAGATTCATAACTCGAACACCGCGTTCCGGCAGTCGTCAAAGT---GCTG---GCCACTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......GCGT---CTAGC--TGTGCC-GCAT----CTAGCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
droGri2
TTTGAAGGCGTCGACTAGC--AGAGCCCGCATATCTCTATCGGAAACAA--A---C------------------CGA---AAACTCGA---------------GCCCGAAAACTATTTTT-----CATT--------TC-----ACCTTGCA---------------------------------------------------------------------------------------------------------------------------ATTTCCGATCAGAT--AC--AT-TTT-------------------------------------GCGCGT--------GTGT-------GCT---TAAAAAAGCTTCAACTATTTAAACACCATGTAA----ATCA----------------------ATCTAAA--GCA-AACAATTTA-----AT----------------TGTG----------------------ACATT-------------------------------------TA----------------TTCGAATATCTTAC-------------------------------------------AC-A------------TCTTTTGCCGCAGATTCATAAGTCGCACCCCACGCTCGAGTAGCCGTCAGAG---CGCTG---GCCACTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCACCCCACGCTCGAGT............................2011.00110
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTAGCCGTCAGAG---CGCTG---......2111.00110
droWil2
TCTCCACCCAC---CA------------------------------------------------------------C---AATATATA---------------TGCT------------------TGAA--------ACT-TCTGCT-----------------------------T------GTAAAGT-------TC---------------------------------TTCTATT-TTTGTGT----TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT-----TTGTC----TTTC----TCCTGGAAAGTCATA-------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................................................................................................T-TTTGTGT----TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT-----TTGTC----G.......................................................................20200.05100100
dp5
TCTGCTG--------------TGTGCC-GCAT----CTAGCGGATCC-------AC------------------CAA---AAGT---A---------------TCTC------------------------------------G-----------------------------------CGCTAACGAAAAGATACAGA--A----------------------------------------------------------------------------------TATTT--ACAT---------------------------------TTACCGCCTGCCGCGT--------GTGT-------GCC-------------------GCT-CTCTTCCGTGTAA----CTAATTTTTTTTTTTCTTTT---CTGA-TTAACT--G----------------------AAATGGATAC-------------------------------------------------------AAACGCTTCTTGTTTCTTGCCACTGAACG-A-ACTAA----TGTGCC--------TCCCTCTCGCCCTCC-----------------------------T---CCGCCC--TTCTGCAGATTCATAACGCGCACCACACGCTCCCACAGTCGCCAGGGATCCACTGGTGGCCATCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................ATCC-------AC------------------CAA---AAGT---A---------------TCTC------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001000000
droPer2
TCTGCTG--------------TGTGCC-GCAT----CTAGCGGATCC-------AC------------------CAA---AAGT---A---------------TCTC------------------------------------G-----------------------------------CGCTAACGAAAAGATACAGA--A----------------------------------------------------------------------------------TATTT--ACAT---------------------------------TTACCGCCTGCCGCGT--------GTGT-------GCC-------------------GCT-CTCTTCCGTGTAA----CTAATTTTT--TTTTCTTTTCCTCTGA-TTAACT--G----------------------AAATGGATAC-------------------------------------------------------AAACGCTTCTTGTTTCTTGCCACTGAACG-A-ACTAA----TGTGCC--------TCCCTCTCGCCCTCC-----------------------------T---CCGCCC--TTCTGCAGATTCATAACGCGCACCACACGCTCCCACAGTCGCCAGGGATCCACTGGAGGCCATCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................................................................................GCCGCGT--------GTGT-------GCC-------------------GCT-CTC.........................................................................................................................................................................................................................................................................................................................2011.001000001
droAna3
TTTGTTGCCGT---CTAGC--TGTGCC-GCAT----CTAGCGGAACT-------GT------------------CGA---T-TTTGTA---------------TCTC------------------CGGA--------TCT-CA-------------------------------------------------------G--ACATCCGATT-----GACGATTCGATTG-TGTTTTGTT-TTGGTTCTTGTTCAGCCGTAGCAGTACCCGTAGCAGTTGTT--------CGACATTCGCTGCCG-------------------------------CAG------C--A--G------TCGCGTTTTCCCCAGA----------------AAGCCCCGTGTAAA---TTGA----------------------A-GCAGTTATGA-AA---------------------TGGATAC-------------------------------------------------------A---------------------GCCAA-G-T-AACA--GTATCTAAT-------------------------------------------CC-A------------CCA---TTCGCAGATTCATAACGCGCACCACCCGCTCCGCCAGTCGCCAGGGCTCCGCCG---GCCACTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................GTACCCGTAGCAGTTGTT--------CGA.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCAGTCGCCAGGGCTCCGCC..........2311.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAGTCGCCAGGGCTCCGCCG---GC....2511.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGCACCACCCGCTCCGCCAGTC........................2411.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCACCCGCTCCGCCAGTC........................2111.001000001
droBip1
TTTGCTGCCGT---CTAGC--TGTGCC-GCAT----CTAGCGGAACT-------GT------------------CGA---C-TTTGTA---------------TCTC------------------CGGA--------TCG-C-------------------------------------------------------AG--ATACCCGATT-----GACGATTTTATTG-TGTTTTGTT-TTGGTTCTTGTTCAGCCGTA------------GCAGTTGTT--------CAACATTTGCTGCCG-------------------------------CAG------C--A--G------TCGCGTTTTCCCCAGAAGAGTCC--CCCGCC-CCGCCCCGTGTAA----TTTA----------------------A-TGCAGCTATG---------------------AAATGGATAC-------------------------------------------------------A---------------------GCCAA-G-T-AACA--GTATCTAAT-------------------------------------------CC-A------------CCA---TTCGCAGATTCATAACGCGCACCACCCGCTCCGCCAGTCGCCAGGGCTCCGCCG---GCCACTSizeHit CountTotal NormTotal
No Reads
droKik1
TTTGCTGCCGT---CTAGC--CGTGCC-GCCT----CTAGCGGATGT-------ATCTCTTTTCGTAATTCTCTGTT---C-CGTGTA---------------TCTT------------------T----------------CCATC-----------------------------T------GCCGGAT----C--GTATATCTCGTTTT-------------GGCTG-TGTTCTTT--TTGG-----------------------------------------------------------------------------------------------CATGT--------GTG-------TGTT-------------------GTTTTGTTGCCGTGAAAA---TTAA----------------------A-TTAAA---------TGCTTA-----TGACTTAAAAAGAAAT-------------------------------------------------------A-----------------------AAAC--T--AT-A----AGTAAT-------------------------------------------CG-A-----A-TGTCGC-C---TTCGCAGATTTATAACGCGCACCACACGCTCCGCCAGTCGCCAGAGTTCCGCCG---GACACTSizeHit CountTotal NormTotal
No Reads
droFic1
TTTGCTGCCGT---CTAGC--CGTGCC-GCAT----TTAGCGGAACT-------CC------------------AGA---GAGTTGTACTCGAATGAAATATATCTC------------------T------------------------------------------------------------------------GATATCTC---------------------TG--ATTTTGTT-TTGGTGT----TCT---------------------------GATACTTC-G--ATTT-C-GCCT-------------------------------TGGC-----CACCGCTTGTTATTTCCGTG-------------------------TGTTTCCGTGTAA----ACAA----------------------A-TC-----------------------------------------------------------------------------------------------------------------CCAGCCGA-G-T-AATAC----TGTAAT-------------------------------------------CC-----------CCGC-C---TCCGCAGATTCATAACGCGCACCACGCGCTCCGCCAGTCGCCAGAGTTCCGCCG---GACACTSizeHit CountTotal NormTotal
No Reads
droEle1
TTTGCTGCCGT---CTAGC--CGTGCC-GCAT----TTAGCGGAACT-------CT------------------CGCATCGAGTTGTA---------------TCTT------------------TGTA--------TCTTTCTATC-----------------------------T------GACGGAT----CTTGG--ATCTCGTTTCCC------------------GTTTTGTT-TTGGTGTGTGTTC----------------------------------------------TACCT-------------------------------CCT------C-----A------TCGCGTGTT-----------------------TATTTCCGTGTAAATATCTAA----------------------A-TTAACT-AAA-TACTGCTTA-----TGG------------------------------------------------CAAATCCCCCCATAGAAGAA--------------GTG----AACAAA-A-TAAATAA----AGTAAT-------------------------------------------CT-A-----AAAAACGC-C---TTCGCAGATTCATAACGCGCACCACGCGCTCTGCCAGTCGCCAAAGTTCCGCCG---GACACTSizeHit CountTotal NormTotal
No Reads
droRho1
TTTGCTGCCGT---CTAGC--CGTGCC-GCAT----TTAGCGGAACT-------CT------------------CGA---GAGTTGTA---------------TCTT------------------TGTA--------TCT-------------------------------------------GTCGGAT----CTGGG--ATCTCGTTTCCC------------------GTTTTGTTTTTGGTGT----TCT--------------------------------------------CTGCTG----------------------------------------------A------TCGCGTGTT-----------------------TATTTCCGTGTAAA--TCTAA----------------------A-TTAACT-AAA-TACTGTTTA-----TGG------------------------------------------------CAAATCCCGC------AGAA---------------------ATCAAATAGTAAATGA----AGTAAT-------------------------------------------CCGA-----A---CCGC-C---TTCGCAGATTCATAACGCGCACCACGCGCTCCGCCAGTCGCCAGAGTTCCGCCG---GACACTSizeHit CountTotal NormTotal
No Reads
droBia1
TTTGCTGCCGT---CTAGC--CGTGCC-GCAT----TTAGCGGAACTCC--ACTCT------------------CG-----AATTGTA---------------TCTC------------------TGTATCTCTGTATCTTTGTATC-----------------------------T--CGCAGCCGTTT-------GGATATCTCGTTTCGCAGC--------CACGGCTATTTTGTT-TTGGTGT----TCT---------------------------GATCATAC--ACATTT-CTGCTC-------------------------------CAGCCG---C-----G------TCGCGTGTT-----------------------CATTTCCGTGTAA----CTAA----------------------A-TTAATTTAGAAAACCATTT-------G----------------TGCG----------------------AAGT---------------------------------------G-------AAATA-T-AATTG----AGTAAT-------------------------------------------CC-G-----AAACACGC-C---TTCGCAGATTCATAACGCGCACCACGCGCTCCGCCAGTCGCCAGAGTTCCGCCG---GACACTSizeHit CountTotal NormTotal
No Reads
droTak1
TTTGCTGCCGT---CTAGC--CGTGCC-GCAT----TTAGCGGAACTCCGAACTCT-------CGAAAATATCTCGA---A-ATTGTA---------------TCTT------------------TGTA--------TCT-C-----------------------------------------GTCG-----------CATATCTCGTTTTGAAGC-----TA-GACAACTATTTTGTT-TTGGTGT----TCT---------------------------GAT------------------------------------------------------------C-----A------TCGCGTGTT-----------------------CATTTCCGTGTAA----CTAA----------------------A-TTAATTTATA-AACTGTATA--------------------CAATGTGAAGATAAATATATTATAATTAAGAGTT-------------------------------------AAAA-----------------------------------------------------------------------CC-A-----A-AAACGC-C---TTCGCAGATTCATAACGCGCACCACGCGTTCCGCCAGTCGCCAAAGTTCCGCCG---GACATTSizeHit CountTotal NormTotal
No Reads
droEug1
TTTGCTGCCGT---CTAGC--CGTGCC-GCAT----TTAGCGGAACT-------CT------------------CGA---GAGTTGTA---------------TCTT------------------TGTA--------TCT-------------------------------------------GTCGGAT-------GGATATCTCGTTTCACAGC--------AACTG-TATTTTGTT-TTGGTGT----TCT---------------------------GTTCA---------TT-CTGCCG-------------------------TCC---CAG------C--T--G------TCGCGTGTT-----------------------TATTTCCGTGTAA----CTAA----------------------ACTTAAT--ACA-AACTGCTTA-----GT----------------TGGG----------------------GAGTTAAC-------------------A---------------AAGCCAGCAAA-G-T-AATAA----AGCAAT-------------------------------------------CC-A-----C---CCGC-C---TCCGCAGATTCATAACGCGCACCACGCGCTCCGCCAGTCGCCAGAGTTCCGCCG---GACACTSizeHit CountTotal NormTotal
No Reads
dm3
TTTGCTGCCGT---CTAGC--CGTGCC-GCAT----TTAGCGGAACT-------CT------------------CGA---GAGTTGTA---------------TCTT------------------TGTA--------TCT-GCGATC-----------------------------T------GTCGAAT-------GGATATCTCGTTTCACAGC--------GACTG-TATTTTGTT-TCGGTGT----TCT---------------------------GATAC---------TT-CTGCTG-------------------------------CAG------C-----GTGTTTATTGCGTGTT-----------------------TATTTCCGTGTAA----CTAA----------------------A-TTAATTTAGAAAACGGCTTA-----TG----------------TTGG----------------------GAGTT------------------------------------TTGAGCCAACAAATA-T-AATAA----CGTAAT-------------------------------------------CC-A-----A---CCGC-C---TCCGCAGATTCATAACGCGCACCACGCGTTCCGCCAGTCGCCAGAGTTCCGCCG---GACACTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................T----TTAGCGGAACT-------CT------------------CGA---GAGTTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2418.0080000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000200000000000000000000000000000000000000000000000001100000000000000010000000000000000000000000
......................................AGCGGAACT-------CT------------------CGA---GAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000010000000000000000000000000000000000100000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGCCAGAGTTCCGCCG---GAC...2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCACGCGTTCCGCCAGT.........................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001000000
...............................T----TTAGCGGAACT-------CT------------------CGA---G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
..............................AT----TTAGCGGAACT-------CT------------------CGA---.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
...............................T----TTAGCGGAACT-------CT------------------CGA---GAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
..........................C-GCAT----TTAGCGGAACT-------CT------------------CGA---GAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000100000
..............................AT----TTAGCGGAACT-------CT------------------CGA---GAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCAGTCGCCAGAGTTCCGCCG---......2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......GCCGT---CTAGC--CGTGCC-GC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAAT-------------------------------------------CC-A-----A---CCGC-C---TCCGCAG........................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCACGCGTTCCGCCAGTCGCCAGAGA................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................T-GCGATC-----------------------------T------GTCGAAT-------GGATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGCCAGAGTTCCGCCG---GA....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGCGTTCCGCCAGTCGCCAGA..................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TA---------------TCTT------------------TGTA--------TCT-GCGATC-----------------------------T------G.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CGTGCC-GCAT----TTAGCGGAACT-------CT------------------CGA---GAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGCGCACCACGCGTTCCGCCAGTC........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGCCAGTCGCCAGAGTTCC.............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGTCGCCAGAGTTCCGCCG---GAC...2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................A---------------TCTT------------------TGTA--------TCT-GCGATC-----------------------------T------GTCGAAT-------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................TGT----TCT---------------------------GATAC---------TT-CTGCTG-------------------------------AT................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGTTCCGCCAGTCGCCAGAGTTC..............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGTCGCCAGAGTTCCGCCG---GACA..2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................C-GCAT----TTAGCGGAACT-------CT------------------CGA---GAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTA-----TG----------------TTGG----------------------GAGTT------------------------------------TTGAGC...........................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCCGCCAGTCGCCA....................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGTCGCCAGAGTTCCGT...........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................T-------CT------------------CGA---GAGTTGTA---------------TCTT------------------T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....................................TTAGCGGAACT-------CT------------------CGA---GAGTTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTAGAAAACGGCTTA-----TG----------------TTGG----------------------GA........................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAGTCGCCAGAGTTCCGCC..........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGTCGCCAGAGTTCCGCC..........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCAGTCGCCAGAGTTCCGCCG---GACACT3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGTCGCCAGAGTTCCGCC..........2011.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TGCCGT---CTAGC--CGTGCC-GCAT----T............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................TCACAGC--------GACTG-TATTTTGTT-TCGGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................G-TATTTTGTT-TCGGTGT----TCT---------------------------G.......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...............................T----TTAGCGGAACT-------CT------------------CGA---GAGTTGTA---------------T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCCGCCAGTCGCCAGAGTTCC.............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TTGCTGCCGT---CTAGC--CGTGCC-G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.....TGCCGT---CTAGC--CGTGCC-C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
..............................AT----TTAGCGGAACT-------CT------------------CGA---GA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................T-CTGCTG-------------------------------CAG------C-----GTGTTTATTGCGTG.....................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
........................................................................................................................................................................................................................................................................................................T-CTGCTG-------------------------------CAG------C-----GTGTTTATTG.........................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
.............................CAT----TTAGCGGAACT-------CT------------------CGA---GAGTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGCCAGAGTTCCGCCG---G.....2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCCAGTCGCCAGAGTTC..............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................T----TTAGCGGAACT-------CT------------------CGA---GAGTTGTA---------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCCAGAGTTCCGCCG---GA....2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGCCAGTCGCCAGAGTTCCGCC..........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................TGT----TCT---------------------------GATAC---------TT-CTGCTG-------------------------------CAG------C-----GTGT...............................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................T-------CT------------------CGA---GAGTTGTA---------------TCTT------------------TG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................TAC---------TT-CTGCTG-------------------------------CAG------C-----GTGTTTA............................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCCAGTCGCCAGAGT................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-T-AATAA----CGTAAT-------------------------------------------CC-A-----A---CCGC-C---TCCG...........................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................TGTT-----------------------TATTTCCGTGTAA----CTAA----------------------A-...............................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.............................................CT-------CT------------------CGA---GAGTTGTA---------------TCTT------------------T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................GTTGTA---------------TCTT------------------TGTA--------TCT-GC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.3310000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TTTGCTGCCGT---CTAGC--CGTGCC-GCAT----TTAGCGGAACT-------CT------------------CGA---GAGTTGTA---------------TCTT------------------TGTA--------TCT-GCGATT-----------------------------T------GTCGAAT-------GGATATCTCGTTTCACAGC--------GACTG-TATTTTGTT-TCGGTGT----TCT---------------------------GATAC---------TT-CTGCTG-------------------------------CAG------C-----G------TCGCGTGTT-----------------------TATTTCCGTGTAA----CTAA----------------------A-TTAATTTAGA-AACCGCTTA-----TG----------------TGGG----------------------GAGTT-------------------------------------CGAGCCAGCAAATA-T-AATAA----CGTAAT-------------------------------------------CC-A-----A---CCGC-C---TCCGCAGATTCATAACGCGCACCACGCGTTCCGCCAGTCGCCAGAGCTCCGCCG---GACACTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................C--------GACTG-TATTTTGTT-TCGGTGT----......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200000000000002000
..........................C-GCAT----TTAGCGGAACT-------CT------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
...............................................................................................................................................................................................................................................................................................................G-------------------------------CAG------C-----G------TCGCGTGTT-----------------------............................................................................................................................................................................................................................................................................................................................1511.00100000000010000000
..............................AT----TTAGCGGAACT-------CT------------------CGA---.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
...GCTGCCGT---CTAGC--CGTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
..........................................................................................................................................CT-GCGATT-----------------------------T------GTCGAAT-------GGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
................................................................................................................................................................................................................TTCACAGC--------GACTG-TATTTTGTT-TC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
droSec2
TTTGCTGCCGT---CTAGC--CGTGCC-GCAT----TTAGCGGAACT-------CT------------------CGA---GAGTTGTA---------------TCTT------------------TGTA--------TCT-GCGATT-----------------------------T------GTCGAAT-------GGATATCTCGTTTCACAGC--------GACTG-TATTTTGTT-TCGGTGT----TCT---------------------------GATACTTCTGATACTT-CTGCTG-------------------------------CAG------C-----G------TTGCGTGTT-----------------------TATTTCCGTGTAA----CTAA----------------------A-TTAATTTAGA-AACCGCTTA-----TG----------------TGGG----------------------GAGTT-------------------------------------CGAGCCAACAAATA-T-AATAA----CGTAGT-------------------------------------------CC-A-----A---CCGC-C---TCCGCAGATTCATAACGCGCACCACGCGTTCCGCCAGTCGCCAGAGTTCCGCCG---GACACTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................GA---GAGTTGTA---------------TCTT------------------TGTA--------TCT-GC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
....................................TTAGCGGAACT-------CT------------------CGA---GA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..............................................T-------CT------------------CGA---GAGTTGTA---------------TCTT------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
droYak3
TTTGCTGCCGT---CTAGC--CGTGCC-GCAT----TTAGCGGAACT-------CT------------------CAA---GAGTTGTA---------------TCTT------------------TGTA--------TCT-CCGATC-----------------------------T------GTCGAAT-------GGATATCTCGTTTCACAGC--------GATCG-TATTTTGTT-TCGCTGT----TCT---------------------------GATAT---------TT-CTACTG-------------------------------CAG------C-----G------TCGCGTGTT-----------------------TATTTCCGTGTAA----CTAA----------------------A-TTAATTTAGA-AACCGCTTAATGTGTG----------------TGTG----------------------GAGTT-------------------------------------TGTGCCAGCAAATA-T-AATAA----AGTAAT-------------------------------------------CC-A-----A---CCGC-C---TCCGCAGATTCATAACGCGCACCACGCGTTCCGCCAGTCGCCAGAGTTCCGCCG---GACACTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................AT----TTAGCGGAACT-------CT------------------CAA---GA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.....................................................................................................................................................................................................................AGC--------GATCG-TATTTTGTT-TC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGCCAGTCGCCAGAGTT...............2111.00101000000000
.........................................................................................................................................TCT-CCGATC-----------------------------T------GTCGAAT-------GGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
.......................................................................................................................................................................................GTCGAAT-------GGATATCTCGTTTCACAGC--------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
........................................................................................................................................................................................................................................TTTTGTT-TCGCTGT----TCT---------------------------GATAT---------TT-.......................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCATAACGCGCACCAC......................................1911.00101000000000
droEre2
TTTGCTGCCGT---CTAGC--CGTGCC-GCAT----TTAGCGGAACT-------CT------------------CGA---GAGTTGTA---------------TCTT------------------TGTA--------TCT-GCGATC-----------------------------T------GTCGGAT-------GGATATCTCATTTCACAGC--------GACTG-TATTTTGTT-TCGCTGT----TCT---------------------------GATAT---------TT-CTGCTG-------------------------------TAA------C-----G------TCGCGTGTT-----------------------TATTTCCGTGTAA----CTAA----------------------A-TTAGTTTAGA-AACCGCTTA-----AG----------------TGGG----------------------GAGTT-------------------------------------TG-GCCAGCAAATA-T-AATAA----AGTAAT-------------------------------------------CC-A-----A---CCGC-C---TCCGCAGATTCATAACGCGCACCACGCGTTCCGCCAGTCGCCAGAGTTCCGCCG---GACACTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................CTGCTG-------------------------------TAA------C-----G------TCGCGTGTT-----------------------TA..........................................................................................................................................................................................................................................................................................................................2211.0010000010
.......................................................................................................................................................................................................ATATCTCATTTCACAGC--------GACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000

Generated: 05/19/2015 at 10:42 AM