ID:

dvi_5456

 Coordinate:

scaffold_12875:6209790-6209940 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.1 -15.3 -15.1

Flybase annnotation

CDS [Dvir\GJ20806-cds]; exon [dvir_GLEANR_6221:1]; intron [Dvir\GJ20806-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGGCCGTTTCCTATGCCGATGTTATCAAGGAGGAGTGGCAGACCTTCAAGGTGAGTAATGCGCGGGAGATAGAACCAAAGAATGGGGAGGAGGGGACGACGACTCGAATTGCGAACCAACTGTTTTGTGGCAGGTGTCAAATGCAGGTTGCATGATTAATGCCTTTCTTAATTTAGTTATTGAAGCCATTGTTTCAAGCTTTTGATGCATATCTGAGCGCTGAGTCATTACTCAAAAATATTTCTTGCTCT
**********************************************************.......((.......(((.(((((((.......((..((.(((......)))))..))..))))))).)))......))***************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060662
9x160_0-2h_embryos_total
 GSM1528803
follicle cells		 M047
female body
 SRR060679
140x9_testes_total
 M027
male body		 SRR060663
160_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 M061
embryo
 V116
male body		 SRR060661
160x9_0-2h_embryos_total
 SRR060672
9x160_females_carcasses_total
 SRR060673
9_ovaries_total
 SRR060666
160_males_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060656
9x160_ovaries_total
 SRR060657
140_testes_total
 SRR060674
9x140_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060688
160_ovaries_total
 SRR060689
160x9_testes_total
 M028
head
 SRR060687
9_0-2h_embryos_total
 SRR060659
Argentina_testes_total
.................................................GGTGAGTAACGCGTGGGA........................................................................................................................................................................................ 18 2 3 8.33 25 25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................GGTGAGTAACGCGTGGGAAAT..................................................................................................................................................................................... 21 3 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGAGTAACGCGTGGGAAAT..................................................................................................................................................................................... 20 3 1 5.00 5 4 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
AGGCCGTTTCCTATGCCGAT....................................................................................................................................................................................................................................... 20 0 1 4.00 4 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................CGATGTTATCAAGGAGGAGTGGC.................................................................................................................................................................................................................... 23 0 1 3.00 3 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TGTTCTCAAGGAAGGGTGG..................................................................................................................................................................................................................... 19 3 11 2.64 29 0 29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................GTTATCAAGGAGGAGTGGC.................................................................................................................................................................................................................... 19 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................AGGAGGAGTGGCAGACCT.............................................................................................................................................................................................................. 18 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................GGTGAGTAACGCGTGGGAAA...................................................................................................................................................................................... 20 3 4 2.00 8 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........TATGCCGATGTTATCAAGGA............................................................................................................................................................................................................................ 20 0 1 2.00 2 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................ATCAAGGAGGAGTGGCAGACC............................................................................................................................................................................................................... 21 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................CGATGTTATCAAGGAGGA......................................................................................................................................................................................................................... 18 0 1 2.00 2 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................GTGGCAGACCTTCAAGCTGG..................................................................................................................................................................................................... 20 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................ATGTTATCAAGGAGGAGTGGC.................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........TATGACGATGTTATCAAGGA............................................................................................................................................................................................................................ 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........CTATGCCGATGTTATCAAGGAG........................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGAGTAATGCGCGGGAAAAA.................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................AACTGTTTTGTGGCAGGTGTC................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................TCAAGGAGGAGTGGCAGACCTTCAAGCT....................................................................................................................................................................................................... 28 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............ATGCCGATGTTATCAAGGAG........................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CAAGGAGGAGTGGCAGACCTTCAAG......................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.............TGCCGATGTTATCAAGGAGGAGT....................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................AGGAGGAGTGGCAGACCTTCA........................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................AAGGAGGAGTGGCAGACCTTCAAGC........................................................................................................................................................................................................ 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................GATGTTATCAAGGAGGAGTGGC.................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................AGTTTAGTTATTGAAGCCATTG............................................................ 22 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................TGCGCGGGAGATAGAACCAAA............................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................GGTGAGTAACACGCGGGAAAT..................................................................................................................................................................................... 21 3 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
AGGCCGTTTCCTATGACGAT....................................................................................................................................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TTATCAAGGAGGAGTGGCAGAC................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............ATGCCGATGTTATCAAGGA............................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................AGGAGTGGCAGACCTTCAAGC........................................................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....CGTTTCCTATGCCGATG...................................................................................................................................................................................................................................... 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................GTTATCAAGGAGGAGTGGCAGA................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................TATCAAGGAGGAGTGGCAGACC............................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......TTCCTATGCCGATGTTATCAAGGAGGA......................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................CGATGTTATCAAGGAGGAGTGGCAGACC............................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................AAGGAGGAGTGGCAGACCTTCA........................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................GTTATCAAGGAGGAGTGGCAGACC............................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................TCAAGGAGGAGTGGCAGACCTTCAAGC........................................................................................................................................................................................................ 27 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................GGACGACGACTCGAATTGCGA......................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......TTCCTATGCCGATGTTATCAAGGA............................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................GTTATCAAGGACGAGTGGCAGACCTT............................................................................................................................................................................................................. 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................GTGGAATGTGTCAAATGCA.......................................................................................................... 19 2 8 0.88 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................GGGTGAGTAACGCGTGGGA........................................................................................................................................................................................ 19 3 7 0.86 6 3 0 0 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAGTAACGCGTGGGAAAT..................................................................................................................................................................................... 19 3 20 0.80 16 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAGTAACGCGCGGGAAATC.................................................................................................................................................................................... 20 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................CGATGTTATCAGGGACGA......................................................................................................................................................................................................................... 18 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................GGTGAGTAACACGCGGGA........................................................................................................................................................................................ 18 2 6 0.50 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................TGTGGAATGTGTCAAATGCA.......................................................................................................... 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................GGTGAGTAATACGTGGGA........................................................................................................................................................................................ 18 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................GGAAGGTGGGGACGACGTC.................................................................................................................................................... 19 3 20 0.35 7 1 0 0 0 0 0 0 1 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 2
............................................................................................................................GTGTGGAATGTGTCAAATGCA.......................................................................................................... 21 3 13 0.31 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TGTGGAATGTGTCAAATGC........................................................................................................... 19 2 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................CATCAGTTTTGTGGCAGG..................................................................................................................... 18 2 12 0.25 3 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................GTGAGTAACGCGTGGGAAA...................................................................................................................................................................................... 19 3 14 0.21 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............TGCCGATGTCATCAAGGAC........................................................................................................................................................................................................................... 19 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................GACGACGACTCGAATTCCAAG........................................................................................................................................ 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................TGAGTAACGCGCGGGGAAT..................................................................................................................................................................................... 19 3 9 0.11 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................GTGGAATGTGTCAAATGC........................................................................................................... 18 2 19 0.11 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAGTAACGCGTGGGACAT..................................................................................................................................................................................... 19 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............GCCGATGTCATCAAGGAC........................................................................................................................................................................................................................... 18 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................................GGTGAGTAACGTGGGGGA........................................................................................................................................................................................ 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TCCGGCAAAGGATACGGCTACAATAGTTCCTCCTCACCGTCTGGAAGTTCCACTCATTACGCGCCCTCTATCTTGGTTTCTTACCCCTCCTCCCCTGCTGCTGAGCTTAACGCTTGGTTGACAAAACACCGTCCACAGTTTACGTCCAACGTACTAATTACGGAAAGAATTAAATCAATAACTTCGGTAACAAAGTTCGAAAACTACGTATAGACTCGCGACTCAGTAATGAGTTTTTATAAAGAACGAGA
*****************************************************************************************************************.......((.......(((.(((((((.......((..((.(((......)))))..))..))))))).)))......))********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060667
160_females_carcasses_total
 SRR060686
Argx9_0-2h_embryos_total
 V116
male body		 V047
embryo
...............................................................................................................................................GTCCAACGTACTAATTACG......................................................................................... 19 0 1 1.00 1 1 0 0 0 0
...........................................GAAGTTCCACTCATTACGCGC........................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0
....................................................................................................................................CCATAGTTTACGTCCAGGGT................................................................................................... 20 3 2 0.50 1 1 0 0 0 0
..............................................................................................................................................................................................................CGTAGAGACTCGCGAATAAG......................... 20 3 3 0.33 1 0 0 1 0 0
.......................................................................................................TGCTTAACGCTTAGTTAACAA............................................................................................................................... 21 3 6 0.17 1 0 0 0 1 0
......................................................................................................................TGACAAAACACCGTGCAAA.................................................................................................................. 19 2 12 0.08 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:6209740-6209990 - dvi_5456 AGGCCGTTTCCTATGCCGATGTTATCAAGGAGGAGTGGCAGACCTTCAAGGTGAGTAATGCGCG-G------------------------------------------G--------------AGATAGAACC-AAAGAA-----------------------TGGGGA-GGAGGGGACGACGACTCGAATTGCGAACCAACTGTTTT-G--------------------TGGCAGGTGTCAAA-TG-CAGGTTG------------------------CATGATTAATGCCTTTCTTAA--------------TTTAGT-TATTGAAGCCATTGTT----------------------------TCA--------AGCTTTTGATGCATATCTGAGCGCTGAGTCATTA--------------------------CTC-AAAAAT-ATTTCTTGCTCT
droMoj3 scaffold_6496:23824129-23824461 + AGGCCGTTTCCTTTGCTGATGTTATCAAAGAGGAGTGGCACACCTTCAAGGTAAGTAATGACTT--GATTGAAGAAGAATAGAGGAATAGACATGGATTGAATTATCCGGTGACGAATGCCGGA------ATCAGAGGAAATTGGAATTTAGTAATCTGAGAATGGGGAAGGAAAAGAAGTTG-CTCGAATTTAGAAGCAACTGTTTTCG--------------------CAACAGGTGTCAAC-TG-CAGTT--------------------TG----TGTGATTAATGCCTTTGCTA---------------CGTAGTATTTTGGAGACATTGTT----------------------------CCGCTTTATTTTTCTTTCAATGCATTTTTGACCGTTGAGTCATGT--------------------------GCC-ATTAAT-AATTGTTCTTTT
droGri2 scaffold_15112:1098551-1098800 - AAGCGGTTTCTTTTGCCGATGTTATCAAGGAAGAATGGCAGACATTCAAAGTGAGTAAT-------------------------------------------------------------------------------AAAAAGGGGG----------------------------------------------GCAACAGCTGTTTTGGTTTTTGTTTCTTTTTCAGTGTTGCAGGTGTCAAA-TT-TAAAT-GCATGAATAATGATTGAT---GATTAATGATTAATATCTTTT-GT-----------------------------GGTATCACTGACGTAGTAGTTCTA---AACCATTGTTT---------------CTGCTGCGTACTTCAACACTGAGTCATGT---GGA----------GTG-------------CAAC-AAC---TGCACT
droWil2 scf2_1100000004512:1173885-1173940 + AGGCAGTGTCCTATTCCGAACTCGTGAGGGAAGAATGGAATACCTTCAAGGTAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 3:15912957-15913162 + AGGCCGTCTCCTATGCCGAGGTCATCCAGGAGGAATGGCACACCTTCAAGGTAAGTACTGTTT-CTGATC------------------------------------GAG--------------ATTTGTCACC-CAGGAAATCCGAGC----------------------------------------------TAAGCAAGTGTTTT-G--------------------TGA-------CAGAAG-GCAGG-GG-----------C----TTTGTGACGATGATTAATATCTTTTTGA-----------------------------TGTTTTGTTTGCATAGTTGGACTGTTTTTCCATTGT--------------CTTTCGCTGCATAT-------------------------------------------------------------------
droPer2 scaffold_4:847686-847892 - AGGCCGTCTCCTATGCCGAGGTCATCCAGGAGGAATGGCACACCTTCAAGGTAAGTACTGTTT-CTGATC------------------------------------GAG--------------ATTTGTCACC-CAGGAAATCCGAGC----------------------------------------------TAAGCAAGTGTTTT-G--------------------TGA-------CAGAAG-GCAGGGGG-----------C----TTTGTGACGATGATTAATATCTTTTTGA-----------------------------TGTTTTGTTTGCATAGTTGGACTGTTTTTCCATTGT--------------CTTTCGCTGCATAT-------------------------------------------------------------------
droAna3 scaffold_13266:17160613-17160865 + AGGCCGTCTCCTTCGCCGATGTCGTCAAGGAGGAGTGGCAAACCTTCAAGGTGAGTGGTAGTCCCTGTTC------------------------------------CCG--------------ATTTGTCACC-TAGGAAATCCGAAT----------------------------------------------CCAACAACTGTTCTCGT-------------------TCTCCGGTGACAAG-TG-TAGCT-G--T-----------------AAGCGGTGATTAATCCATT----------ATTTTTGGGCCTTTGTCTCGCGCAGACATTGTTTGCATAGTTGGGC-----------------------------TTTCGATGCAT----------------------------TCTTCCGTTTGTGACGCCGCCGATG-TCGATTCCCTTCTCT
droBip1 scf7180000396735:418397-418452 + AGGCCGTCTCCTTCGCCGATGTCGTCAAGGAGGAATGGCACACGTTCAAGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302817:300859-300914 + AGGCCGTTTCCTTCGCCGACGTGGTCAAGGAGGAATGGCATACGTTCAAGGTAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454066:1757633-1757688 - AGGCCGTTTCCTTTGCCGATGTGATCAAGGAGGAATGGCACACTTTCAAGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491271:199342-199405 + AGGCCGTTTCCTTCGCCGATGTGATTAAGGAGGAATGGCACACTTTCAAGGTGAGTTTTTCGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779260:26043-26271 + ACGCTGTTTCCTTTGCCGAATCGATCACGGAGGAATTTCGCGCTTTCAAGGTAAGTTTTTCTCT--GAT-----A-------ATGGATTA-T------------TTATA--------------ATTTGTCACCCCAGGATATCGAAGT----------------------------------------------GCAACAAGTGTTTT-------------------------CCGGTGACAAA-GGCTAGC-----------------------TAGCGATGATTAATGCATTTTT---------TTTTGGGCCTTTGTCTTGCGCAGACATTGTTTGCATAGTTGGACTGG--------------------------------------------------GACTTTA---TGCATTCTTCC--------------------------------GTT
droBia1 scf7180000302292:3780546-3780774 + AGGCCGTTTCCTTCGCCGATGTGATCAAGGAGGAATGGCATACATTCAAGGTGAGCTTTTTTCC-GGATT-GTCA-------ATGGATTA-T------------ATCCG--------------ATTTGTCACCCCAGGAAACCGGAGC----------------------------------------------GCAACAAGTGTTCT-------------------------CGGGTAACAAG-GG-------------------C----T---TATCGATGATTAATGCATT----------ATTTTTGGGCCTTTGTC-TGCGCAGACATTGTTTGCATAGTTGGACTGC--------------------------------------------------GACTTAAATGCGCATTCTTCC-----------------------------------
droTak1 scf7180000415376:64381-64628 + AGGCCGTTTCCTTCGCCGACGTTATCAAGGAGGAATGGCATGCGTTCAAGGTGAGCTTCTACCG-GGATG-ATCA-------ATGGATAAAC------------TTTCG--------------ATTTGTCACCCCAGGAAATCGGAGC----------------------------------------------ACAACAAGTGTTCT-------------------------CCGGTAACAAG-GG-------------------------------CGATGATTAATGCCTGAATTGATTGTATTTTTGGGCCTTTGTCTTGCGCAGACTTTGTTTGCATAGTTGGACTG--------------------------------------------------------------GCATTCTTCCGTTTGTGACG----------AC-GATTCTGATTCT
droEug1 scf7180000409462:2995922-2995977 - AGGCCGTTTCCTTTGCCGATGTGATCATGGAGGAATGGCATACATTCAAGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr2R:9849792-9849847 + AGGCCGTTTCCTTCGCCGACGTGGTCATGGAGGAATGGCATACGTTCAAGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 2r:10537776-10537831 + AGGCCGTTTCCTTCGCCGACGTGGTCATGGAGGAATGGCATACGTTCAAGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_1:7375434-7375489 + AGGCCGTTTCCTTCGCCGACGTGGTCATGGAGGAATGGCATACGTTCAAGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 2R:7104001-7104056 - AGGCCGTTTCCTTCGCCGACGTGGTCATGGAGGAATGGCACACGTTCAAGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4845:15972155-15972210 - AGGCCATTTCCTTCGCCGACGTGGTCATGGAGGAATGGCACACGTTCAAGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AGGCCGTTTCCTATGCCGATGTTATCAAGGAGGAGTGGCAGACCTTCAAGGTGAGTAATGCGCG-G------------------------------------------G--------------AGATAGAACC-AAAGAA-----------------------TGGGGA-GGAGGGGACGACGACTCGAATTGCGAACCAACTGTTTT-G--------------------TGGCAGGTGTCAAA-TG-CAGGTTG------------------------CATGATTAATGCCTTTCTTAA--------------TTTAGT-TATTGAAGCCATTGTT----------------------------TCA--------AGCTTTTGATGCATATCTGAGCGCTGAGTCATTA--------------------------CTC-AAAAAT-ATTTCTTGCTCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
AGGCCGTTTCCTATGCCGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.004001000000000000000000000000000000000000000000000000000000000003
................CGATGTTATCAAGGAGGAGTGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2313.003000100000001000000000000000001000000000000000000000000000000000
....................GTTATCAAGGAGGAGTGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000000000020000000000000000000000000000000000000000000000000
...........................AGGAGGAGTGGCAGACCT..............................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000000000000000000000000000000000000000000000000000000000000
...........TATGCCGATGTTATCAAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000000000000000000000001000001000000000000000000000000000000000
.......................ATCAAGGAGGAGTGGCAGACC...............................................................................................................................................................................................................................................................................................................................................................................................................................2112.002001000000000000000000000000001000000000000000000000000000000000
................CGATGTTATCAAGGAGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002000000000000000000000000000000001000100000000000000000000000000
..................ATGTTATCAAGGAGGAGTGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000010000000000000000000000000000000000000000000000000000000
..........CTATGCCGATGTTATCAAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000001000000000000000000000000000000
.......................................................................................................................................................................................................AACTGTTTT-G--------------------TGGCAGGTGTC..........................................................................................................................................................................................................................2111.001000000000000000000000001000000000000000000000000000000000000000
............ATGCCGATGTTATCAAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000001000000000000000000000000000000000000000000000000000
.........................CAAGGAGGAGTGGCAGACCTTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000100000000000000000000000
.............TGCCGATGTTATCAAGGAGGAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000100000000000000000000000000
...........................AGGAGGAGTGGCAGACCTTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..........................AAGGAGGAGTGGCAGACCTTCAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000010000000000000000000000000000000000000000
.................GATGTTATCAAGGAGGAGTGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000100000000000000000000000000
..........................................................TGCGCG-G------------------------------------------G--------------AGATAGAACC-AAA..................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.....................TTATCAAGGAGGAGTGGCAGAC................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
............ATGCCGATGTTATCAAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000010000000000000000000000000000
..............................AGGAGTGGCAGACCTTCAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
....CGTTTCCTATGCCGATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001000000000000000000000000000000000000000000000000000000000000001
....................GTTATCAAGGAGGAGTGGCAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000010000000000000000000000000000000000000000000000
......................TATCAAGGAGGAGTGGCAGACC...............................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
.......TTCCTATGCCGATGTTATCAAGGAGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
................CGATGTTATCAAGGAGGAGTGGCAGACC...............................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000000000000000000000000000000000000000000000000000000000000
..........................AAGGAGGAGTGGCAGACCTTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000001000000000000000000000000000
....................GTTATCAAGGAGGAGTGGCAGACC...............................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000000000000000000000000000000000000000000000000000000000000
........................TCAAGGAGGAGTGGCAGACCTTCAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................GGACGACGACTCGAATTGCGA.......................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.......TTCCTATGCCGATGTTATCAAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000010000000000000000000000000000000000000000000000000
droMoj3
AGGCCGTTTCCTTTGCTGATGTTATCAAAGAGGAGTGGCACACCTTCAAGGTAAGTAATGACTT--GATTGAAGAAGAATAGAGGAATAGACATGGATTGAATTATCCGGTGACGAATGCCGGA------ATCAGAGGAAATTGGAATTTAGTAATCTGAGAATGGGGAAGGAAAAGAAGTTG-CTCGAATTTAGAAGCAACTGTTTTCG--------------------CAACAGGTGTCAAC-TG-CAGTT--------------------TG----TGTGATTAATGCCTTTGCTA---------------CGTAGTATTTTGGAGACATTGTT----------------------------CCGCTTTATTTTTCTTTCAATGCATTTTTGACCGTTGAGTCATGT--------------------------GCC-ATTAAT-AATTGTTCTTTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........TTTGCTGATGTTATCAAAGAGGAGTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.......................ATCAAAGAGGAGTGGCACACCTTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
.................GATGTTATCAAAGAGGAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.................GATGTTATCAAAGAGGAGTGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
..........................AAAGAGGAGTGGCACACCTTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
................TGATGTTATCAAAGAGGAGTGGCACAC................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
droGri2
AAGCGGTTTCTTTTGCCGATGTTATCAAGGAAGAATGGCAGACATTCAAAGTGAGTAAT-------------------------------------------------------------------------------AAAAAGGGGG----------------------------------------------GCAACAGCTGTTTTGGTTTTTGTTTCTTTTTCAGTGTTGCAGGTGTCAAA-TT-TAAAT-GCATGAATAATGATTGAT---GATTAATGATTAATATCTTTT-GT-----------------------------GGTATCACTGACGTAGTAGTTCTA---AACCATTGTTT---------------CTGCTGCGTACTTCAACACTGAGTCATGT---GGA----------GTG-------------CAAC-AAC---TGCACTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............CCGATGTTATCAAGGAAGAATGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101
..................ATGTTATCAAGGAAGAATGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101
............................................................................................................................................................................................................................................................................................................................................................................................................ACACTGAGTCATGT---GGA----------GTG-------------C................2111.00110
..................ATGTTATCAAGGAAGAATGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101
droWil2
AGGCAGTGTCCTATTCCGAACTCGTGAGGGAAGAATGGAATACCTTCAAGGTAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................GAACTCGTGAGGGAAGAATGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................2214.00400400
.......GTCCTATTCCGAACTCGTGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................2213.00300300
............ATTCCGAACTCGTGAGGGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2013.00330000
...................ACTCGTGAGGGAAGAATGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200200
.....GTGTCCTATTCCGAACTCGTGAGGGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200200
.......................GTGAGGGAAGAATGGAATACCTT.............................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200200
.................GAACTCGTGAGGGAAGAATGGAATACC...............................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200200
...........TATTCCGAACTCGTGAGGGAAGAATGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200200
...........................GGGAAGAATGGAATACCTT.............................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
.....................TCGTGAGGGAAGAATGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100
...CAGTGTCCTATTCCGAACTCGTGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
....AGTGTCCTATTCCGAACTCGTGAGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
.....GTGTCCTATTCCGAACTCGTGAGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
..........CTATTCCGAACTCGTGAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.........................GAGGGAAGAATGGAATACCTT.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
..................AACTCGTGAGGGAAGAATGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
.....GTGTCCTATTCCGAACTCGTGAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
.....................TCGTGAGGGAAGAATGGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
......................CGTGAGGGAAGAATGGAATACCTT.............................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
.....GTGTCCTATTCCGAACTCGTGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000
..............TCCGAACTCGTGAGGGAAGAATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
...............CCGAACTCGTGAGGGAAGAATGGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
....AGTGTCCTATTCCGAACTCGTGAGGGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100
............ATTCCGAACTCGTGAGGGAAGAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
.......................GTGAGGGAAGAATGGAATACCT..............................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001
.....................TCGTGAGGGAAGAATGGAATACCTTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
dp5
AGGCCGTCTCCTATGCCGAGGTCATCCAGGAGGAATGGCACACCTTCAAGGTAAGTACTGTTT-CTGATC------------------------------------GAG--------------ATTTGTCACC-CAGGAAATCCGAGC----------------------------------------------TAAGCAAGTGTTTT-G--------------------TGA-------CAGAAG-GCAGG-GG-----------C----TTTGTGACGATGATTAATATCTTTTTGA-----------------------------TGTTTTGTTTGCATAGTTGGACTGTTTTTCCATTGT--------------CTTTCGCTGCATAT-------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................CGAGGTCATCCAGGAGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030300000000
.GGCCGTCTCCTATGCCGAGGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020200000000
..........CTATGCCGAGGTCATCCAGGAGGAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000002000
..............GCCGAGGTCATCCAGGAGGAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010000
...........TATGCCGAGGTCATCCAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
.................GAGGTCATCCAGGAGGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.................GAGGTCATCCAGGAGGAATGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
................CGAGGTCATCCAGGAGGAATGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
....................GTCATCCAGGAGGAATGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...........................................................................................................................................................................................................GTTTT-G--------------------TGA-------CAGAAG-GCAGG-G.............................................................................................................................................................................................................2111.0010000001000
......TCTCCTATGCCGAGGTCATCCAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
..........CTATGCCGAGGTCATCCAGGAGGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000001000
...............CCGAGGTCATCCAGGAGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
............ATGCCGAGGTCATCCAGGAGGAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000001000
................CGAGGTCATCCAGGAGGAATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000001000
...........TATGCCGAGGTCATCCAGGAGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.............TGCCGAGGTCATCCAGGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..........CTATGCCGAGGTCATCCAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
................CGAGGTCATCCAGGAGGAATGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.........................................................................................................................................................................................................................................................................................................................................GTTTTGTTTGCATAGTTGGA..............................................................................................................2011.0010000000001
................CGAGGTCATCCAGGAGGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
....................................................................TC------------------------------------GAG--------------ATTTGTCACC-CAGGAA...............................................................................................................................................................................................................................................................................................................................2111.0011000000000
.................GAGGTCATCCAGGAGGAATGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.......................ATCCAGGAGGAATGGCACAC................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.........................................................................................................................................................................................................GTGTTTT-G--------------------TGA-------CAGAAG-GC..................................................................................................................................................................................................................1911.0010100000000
.........CCTATGCCGAGGTCATCCAGGAGGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000001000
droPer2
AGGCCGTCTCCTATGCCGAGGTCATCCAGGAGGAATGGCACACCTTCAAGGTAAGTACTGTTT-CTGATC------------------------------------GAG--------------ATTTGTCACC-CAGGAAATCCGAGC----------------------------------------------TAAGCAAGTGTTTT-G--------------------TGA-------CAGAAG-GCAGGGGG-----------C----TTTGTGACGATGATTAATATCTTTTTGA-----------------------------TGTTTTGTTTGCATAGTTGGACTGTTTTTCCATTGT--------------CTTTCGCTGCATAT-------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................GTCATCCAGGAGGAATGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
.........................CCAGGAGGAATGGCACACCTT.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
......................CATCCAGGAGGAATGGCACACCTTC............................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
............ATGCCGAGGTCATCCAGGAGGAATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
droAna3
AGGCCGTCTCCTTCGCCGATGTCGTCAAGGAGGAGTGGCAAACCTTCAAGGTGAGTGGTAGTCCCTGTTC------------------------------------CCG--------------ATTTGTCACC-TAGGAAATCCGAAT----------------------------------------------CCAACAACTGTTCTCGT-------------------TCTCCGGTGACAAG-TG-TAGCT-G--T-----------------AAGCGGTGATTAATCCATT----------ATTTTTGGGCCTTTGTCTCGCGCAGACATTGTTTGCATAGTTGGGC-----------------------------TTTCGATGCAT----------------------------TCTTCCGTTTGTGACGCCGCCGATG-TCGATTCCCTTCTCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................GATGTCGTCAAGGAGGAGTGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2214.004100030
............TCGCCGATGTCGTCAAGGAGGAGTGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2714.004010030
..........CTTCGCCGATGTCGTCAAGGAGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2413.003101010
............TCGCCGATGTCGTCAAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................1913.003110010
............TCGCCGATGTCGTCAAGGAGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002110000
..............................................................................................................................................................................................................................................GACAAG-TG-TAGCT-G--T-----------------AAGC....................................................................................................................................................................................1912.002100100
.................GATGTCGTCAAGGAGGAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002100010
............TCGCCGATGTCGTCAAGGAGGAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002000020
..............GCCGATGTCGTCAAGGAGGAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002000020
..............GCCGATGTCGTCAAGGAGGAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
............TCGCCGATGTCGTCAAGGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
................CGATGTCGTCAAGGAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
............TCGCCGATGTCGTCAAGGAGGAGTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
................CGATGTCGTCAAGGAGGAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
.........CCTTCGCCGATGTCGTCAAGGAGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
................CGATGTCGTCAAGGAGGAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
........TCCTTCGCCGATGTCGTCAAGGAGGAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000010
....................................................................................................................................................................................................................................................................................................................................................ATAGTTGGGC-----------------------------TTTCGATGCAT----------------------------TCTTCCG..................................2811.001100000
.........................................................................................................................................................................................................................................................................................................................................................TGGGC-----------------------------TTTCGATGCAT----------------------------TCTTC....................................2111.001100000
.....GTCTCCTTCGCCGATGTCGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
droBip1
AGGCCGTCTCCTTCGCCGATGTCGTCAAGGAGGAATGGCACACGTTCAAGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AGGCCGTTTCCTTCGCCGACGTGGTCAAGGAGGAATGGCATACGTTCAAGGTAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AGGCCGTTTCCTTTGCCGATGTGATCAAGGAGGAATGGCACACTTTCAAGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AGGCCGTTTCCTTCGCCGATGTGATTAAGGAGGAATGGCACACTTTCAAGGTGAGTTTTTCGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ACGCTGTTTCCTTTGCCGAATCGATCACGGAGGAATTTCGCGCTTTCAAGGTAAGTTTTTCTCT--GAT-----A-------ATGGATTA-T------------TTATA--------------ATTTGTCACCCCAGGATATCGAAGT----------------------------------------------GCAACAAGTGTTTT-------------------------CCGGTGACAAA-GGCTAGC-----------------------TAGCGATGATTAATGCATTTTT---------TTTTGGGCCTTTGTCTTGCGCAGACATTGTTTGCATAGTTGGACTGG--------------------------------------------------GACTTTA---TGCATTCTTCC--------------------------------GTTSizeHit CountTotal NormTotal
No Reads
droBia1
AGGCCGTTTCCTTCGCCGATGTGATCAAGGAGGAATGGCATACATTCAAGGTGAGCTTTTTTCC-GGATT-GTCA-------ATGGATTA-T------------ATCCG--------------ATTTGTCACCCCAGGAAACCGGAGC----------------------------------------------GCAACAAGTGTTCT-------------------------CGGGTAACAAG-GG-------------------C----T---TATCGATGATTAATGCATT----------ATTTTTGGGCCTTTGTC-TGCGCAGACATTGTTTGCATAGTTGGACTGC--------------------------------------------------GACTTAAATGCGCATTCTTCC-----------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AGGCCGTTTCCTTCGCCGACGTTATCAAGGAGGAATGGCATGCGTTCAAGGTGAGCTTCTACCG-GGATG-ATCA-------ATGGATAAAC------------TTTCG--------------ATTTGTCACCCCAGGAAATCGGAGC----------------------------------------------ACAACAAGTGTTCT-------------------------CCGGTAACAAG-GG-------------------------------CGATGATTAATGCCTGAATTGATTGTATTTTTGGGCCTTTGTCTTGCGCAGACTTTGTTTGCATAGTTGGACTG--------------------------------------------------------------GCATTCTTCCGTTTGTGACG----------AC-GATTCTGATTCTSizeHit CountTotal NormTotal
No Reads
droEug1
AGGCCGTTTCCTTTGCCGATGTGATCATGGAGGAATGGCATACATTCAAGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
AGGCCGTTTCCTTCGCCGACGTGGTCATGGAGGAATGGCATACGTTCAAGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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droSim2
AGGCCGTTTCCTTCGCCGACGTGGTCATGGAGGAATGGCATACGTTCAAGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................GTGGTCATGGAGGAATGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200000000000002000
...CCGTTTCCTTCGCCGACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
............TCGCCGACGTGGTCATGGAGGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
...................CGTGGTCATGGAGGAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
.................GACGTGGTCATGGAGGAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
.....................TGGTCATGGAGGAATGGCATACGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
droSec2
AGGCCGTTTCCTTCGCCGACGTGGTCATGGAGGAATGGCATACGTTCAAGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................GACGTGGTCATGGAGGAATGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................22111.00110911
...................CGTGGTCATGGAGGAATGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2015.0050320
............TCGCCGACGTGGTCATGGAGGAATGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2715.0050500
..............GCCGACGTGGTCATGGAGGAATGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2514.0040310
.................GACGTGGTCATGGAGGAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020200
................CGACGTGGTCATGGAGGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020110
.............CGCCGACGTGGTCATGGAGGAATGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020020
...........TTCGCCGACGTGGTCATGGAGGAATGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020200
................CGACGTGGTCATGGAGGAATGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020110
...................CGTGGTCATGGAGGAATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020020
....................GTGGTCATGGAGGAATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020020
..................ACGTGGTCATGGAGGAATGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020110
............TCGCCGACGTGGTCATGGAGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020110
.......................GTCATGGAGGAATGGCATACG...............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
............TCGCCGACGTGGTCATGGAGGAATGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100
.............CGCCGACGTGGTCATGGAGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
..........................ATGGAGGAATGGCATACGTTC............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.............CGCCGACGTGGTCATGGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
.........................CATGGAGGAATGGCATACGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.................GACGTGGTCATGGAGGAATGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
............TCGCCGACGTGGTCATGGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.......................GTCATGGAGGAATGGCATACGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001
........TCCTTCGCCGACGTGGTCA................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100
.................GACGTGGTCATGGAGGAATGGCATACG...............................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100
....................GTGGTCATGGAGGAATGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
................CGACGTGGTCATGGAGGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
................CGACGTGGTCATGGAGGAATGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
.........................CATGGAGGAATGGCATACGT..............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
....CGTTTCCTTCGCCGACGTGGTCATGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100
...........TTCGCCGACGTGGTCATGGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
.................GACGTGGTCATGGAGGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
...........TTCGCCGACGTGGTCATGGAGGAATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100
............TCGCCGACGTGGTCATGGAGGAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
.............CGCCGACGTGGTCATGGAGGAATGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
...........TTCGCCGACGTGGTCATGGAGGAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001
..........................ATGGAGGAATGGCATACGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
...........TTCGCCGACGTGGTCATGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
.................GACGTGGTCATGGAGGAATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
................CGACGTGGTCATGGAGGAATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
...........TTCGCCGACGTGGTCATGGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.....GTTTCCTTCGCCGACGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.....GTTTCCTTCGCCGACGTGGTCATGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
.....GTTTCCTTCGCCGACGTGGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
......................GGTCATGGAGGAATGGCATA.................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
..................ACGTGGTCATGGAGGAATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
...................CGTGGTCATGGAGGAATGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
droYak3
AGGCCGTTTCCTTCGCCGACGTGGTCATGGAGGAATGGCACACGTTCAAGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................GACGTGGTCATGGAGGAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................2016.00600000060000
.................GACGTGGTCATGGAGGAATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................2113.00301001010000
..........CTTCGCCGACGTGGTCATGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00201000010000
.................GACGTGGTCATGGAGGAATGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200000020000
...........TTCGCCGACGTGGTCATGGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200000020000
............TCGCCGACGTGGTCATGGAGGAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200000020000
......................GGTCATGGAGGAATGGCACACGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................2412.00202000000000
...................CGTGGTCATGGAGGAATGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
............TCGCCGACGTGGTCATGGAGGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
..............GCCGACGTGGTCATGGAGGAATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
..............GCCGACGTGGTCATGGAGGAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
AGGCCGTTTCCTTCGCCGACGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000100000
..................ACGTGGTCATGGAGGAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
................CGACGTGGTCATGGAGGAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
........TCCTTCGCCGACGTGGTCATGGAGGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
....CGTTTCCTTCGCCGACGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.......................GTCATGGAGGAATGGCACAC................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
..............GCCGACGTGGTCATGGAGGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
........TCCTTCGCCGACGTGGTCATGGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.............CGCCGACGTGGTCATGGAGGAATGGCACAC................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000010000
..........................ATGGAGGAATGGCACACGTTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
............TCGCCGACGTGGTCATGGAGGAATGGCAC..................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
.................GACGTGGTCATGGAGGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
........TCCTTCGCCGACGTGGTCATGGAGGAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
.................GACGTGGTCATGGAGGAATGGCACACG...............................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.....................TGGTCATGGAGGAATGGCACACG...............................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000100000
................CGACGTGGTCATGGAGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000010000
..............GCCGACGTGGTCATGGAGGAATGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.....GTTTCCTTCGCCGACGTGGTCATGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
droEre2
AGGCCATTTCCTTCGCCGACGTGGTCATGGAGGAATGGCACACGTTCAAGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................GACGTGGTCATGGAGGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................19113.001330001000
.................GACGTGGTCATGGAGGAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................20111.00113000800
.................GACGTGGTCATGGAGGAATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0041000210
............TCGCCGACGTGGTCATGGAGGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000220
.................GACGTGGTCATGGAGGAATGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2214.0041000300
........TCCTTCGCCGACGTGGTCATGGAGGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0022000000
..........CTTCGCCGACGTGGTCATGGAGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0021000100
...CCATTTCCTTCGCCGACGTGGTCATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000002
........TCCTTCGCCGACGTGGTCATGGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0022000000
..................ACGTGGTCATGGAGGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0022000000
......................GGTCATGGAGGAATGGCACAC................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0021000010
...................CGTGGTCATGGAGGAATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
............TCGCCGACGTGGTCATGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
......................GGTCATGGAGGAATGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
.....ATTTCCTTCGCCGACGTGGTCATGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
.....ATTTCCTTCGCCGACGTGGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000
................CGACGTGGTCATGGAGGAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
..........................ATGGAGGAATGGCACACG...............................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100
..............GCCGACGTGGTCATGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100
.......TTCCTTCGCCGACGTGGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
................CGACGTGGTCATGGAGGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
......................GGTCATGGAGGAATGGCACA.................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
................CGACGTGGTCATGGAGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100
..............GCCGACGTGGTCATGGAGGAATGGCAC..................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
.........................CATGGAGGAATGGCACACGTTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
....................GTGGTCATGGAGGAATGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
....CATTTCCTTCGCCGACGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.............CGCCGACGTGGTCATGGAGGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
......................GGTCATGGAGGAATGGCACACGTTCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
..............GCCGACGTGGTCATGGAGGAATGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
................CGACGTGGTCATGGAGGAATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
...........TTCGCCGACGTGGTCATGGAGGAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
..............GCCGACGTGGTCATGGAGGAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
..................ACGTGGTCATGGAGGAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
...................CGTGGTCATGGAGGAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100
..............GCCGACGTGGTCATGGAGGAATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
............TCGCCGACGTGGTCATGGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000

Generated: 05/17/2015 at 04:29 AM