ID:

dvi_5404

 Coordinate:

scaffold_12875:6040959-6041079 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.8 -23.7 -23.6

Flybase annnotation

CDS [Dvir\GJ21515-cds]; exon [dvir_GLEANR_6867:3]; exon [dvir_GLEANR_6867:2]; CDS [Dvir\GJ21515-cds]; intron [Dvir\GJ21515-in]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------##################################################
GAGATGTGGAAAGCGATTCGCGGCCGGCTGATAATTCGAATTCAACGGAAGTTAGGGAACTACCAACCGAAGTATCGGGTGAAAACACATCAGCGTATGGGGAGGAGAATACACCAATGGCAGAGGAGAGTTTAGGCACAACAGTTGTGCCACCCGATGATGGCGGAGAAGGAACGTTACCAGCTCCAGAGGGAACAGCAACAGCAAATGGAACGGAAACT
********************************************************************....(((((((((.((((...((.((...(((.............)))...)).)).....))))..((((((...)))))))))))))))...........*************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060683
160_testes_total
 SRR060655
9x160_testes_total
 SRR060659
Argentina_testes_total
 SRR060657
140_testes_total
 SRR060689
160x9_testes_total
 SRR060681
Argx9_testes_total
 V053
head
 V116
male body		 SRR060670
9_testes_total
 SRR060658
140_ovaries_total
 M027
male body		 GSM1528803
follicle cells		 SRR060679
140x9_testes_total
 M047
female body
 SRR060686
Argx9_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 V047
embryo
 SRR060684
140x9_0-2h_embryos_total
.....................................................................................................................................................................GAGAAGGAACGTTACCAGCT.................................... 20 0 1 8.00 8 4 1 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............GATTCGCGGCCGGCTGAT............................................................................................................................................................................................. 18 0 1 6.00 6 1 4 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................GTTACCAGCTCCAGAGGGAA.......................... 20 0 1 6.00 6 5 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GAAGGAACGTTACCAGCT.................................... 18 0 1 6.00 6 4 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CACCCGATGATGGCGGAGAA................................................... 20 0 1 4.00 4 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................CCAGAGGGAACAGCAACAGCAAATG........... 25 0 1 4.00 4 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................GATGGCGGAGAAGGAACGT............................................ 19 0 1 3.00 3 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................GAAGTATCGGGTGAAAACAC..................................................................................................................................... 20 0 1 3.00 3 0 0 1 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................ACCCGATGATGGCGGAGAAGG................................................. 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................CCAGAGGGAACAGCAACAGC................ 20 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................AATACACCAATGGCAGAGGAGAGT.......................................................................................... 24 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................ATCAGCGTATGGGGAGGA................................................................................................................... 18 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................CCAGAGGGAACAGCAACAGCAAATGGA......... 27 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GAAGGAACGTTACCAGCTC................................... 19 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................ACAGCAACAGCAAATGGAACGGA.... 23 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................TACCAACCGAAGTATCGGGT............................................................................................................................................. 20 0 1 3.00 3 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................CGAAGTATCGGGTGAAAACAC..................................................................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................CCAGAGGGAACAGCAACAGCAAAT............ 24 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GAGATGTGGAAAGCGATTCGC........................................................................................................................................................................................................ 21 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AGCAACAGCAAATGGAACGGAAA.. 23 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GGAGAAGGAACGTTACCAGCT.................................... 21 0 1 2.00 2 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................ACACCAATGGCAGAGGAGAGTTTA....................................................................................... 24 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GAGTTTAGGCACAACAGTTGTG........................................................................ 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................ACGTTACCAGCTCCAGAGGGA........................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AGCAACAGCAAATGGAACGGA.... 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................CCAGAGGGAACAGCAACA.................. 18 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................AACGGAAGTTAGGGAACTAC.............................................................................................................................................................. 20 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..GATGTGGAAAGCGATTCGC........................................................................................................................................................................................................ 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GAGTTTAGGCACAACAGT............................................................................ 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GTGCCACCCGATGATGGCGGA...................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................AGAATACACCAATGGCAGAGGAGAGT.......................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................ACTACCAACCGAAGTATCGGGT............................................................................................................................................. 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................ACATCAGCGTATGGGGAG..................................................................................................................... 18 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CAACAGCAAATGGAACGGA.... 19 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................ACATCAGCGTATGGGGAGGA................................................................................................................... 20 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................CCAGAGGGAACAGCAACAG................. 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................CGAATTCAACGGAAGTTAGGGA................................................................................................................................................................... 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................CGATGATGGCGGAGAAGGA................................................ 19 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................CGTTACCAGCTCCAGAGGGA........................... 20 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................ATGGCGGAGAAGGAACGT............................................ 18 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................CGATGATGGCGGAGAAGG................................................. 18 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............CGATTCGCGGCCGGCTGAT............................................................................................................................................................................................. 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................CCAGAGGGAACAGCAACAGCAAATGG.......... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................GAAAACACATCAGCGTATGG......................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................TCAACGGAAGTTAGGGAACTACCA............................................................................................................................................................ 24 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................GGCGGAGAAGGAACGTTACCAGCT.................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....GTGGAAAGCGATTCGCGGCC.................................................................................................................................................................................................... 20 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................ATTCAACGGAAGTTAGGGAA.................................................................................................................................................................. 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................GAATACACCAATGGCAGAGGAGA............................................................................................ 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................CGATGATGGCGGAGAAGGAAC.............................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................GAATTCAACGGAAGTTAGGG.................................................................................................................................................................... 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................ATGGCGAGAAGGATACACC.......................................................................................................... 19 3 19 1.21 23 0 0 0 0 0 1 2 7 0 0 0 0 0 4 3 1 2 1 1 0 1
.............................................................ACCAACCGAAGTATCGGGT............................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.AGATGTGGAAAGCGATTCGCGGCCGGCT................................................................................................................................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................ATACACCAATGGCAGAGGAGAGTT......................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................CCGATGATGGCGGAGAAG.................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..GATGTGGAAAGCGATTCGCGGCCGGCT................................................................................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................AACACATCAGCGTGTGGGGA...................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AGCAAATGGAACGGAAACT 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................AGTTGTGCCACCCGATGCTG........................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................GTGAAAACACATCAGCGTATGGGGA...................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................ACCCGATGATGGCGGAGAAG.................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AGAGGGAACAGCAACAGCAAAT............ 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................AGAGGAGAGTTTAGGCAC.................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....GTGGAAAGCGATTCGCGGC..................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AACAGCAAATGGAACGGA.... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................GTTTAGGCACAACAGTTGTG........................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................GAATACACCAATGGCAGAG................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................GTTTAGGCACAACAGTTGT......................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................GAGGGAACAGCAACAGCAAATG........... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................GAACAGCAACAGCAAATGGAACGGAA... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................GAAGTTAGGGAACTACCAACCGAA...................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................CCAGAGGGAACAGCAACAGCA............... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................ACCCGATGATGGCGGAGAAGGAACGTT........................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................AACAGTTGTGCCACCCGATGATG........................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................CGAATTCAACGGAAGTTA....................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CGGAACGTTACCCGCTCCA................................. 19 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................AAAACACATCAGCGTATGGGGA...................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................GAAGTATCGGGTGAAAACACATCAGC............................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................CCACCCGATGATGGCGGAGAA................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................AAACACATCAGCGTATGGGGA...................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................AGAATACACCAATGGCAGAGGAGA............................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GCAACAGCAAATGGAACGGAA... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TAGAAGGAACGTTACCAGCT.................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................ATACACCAATGGCAGAGGAGAGTTTAG...................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................AACGTTACCAGCTCCAGAGGGAA.......................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................AACAGTTGTGCCACCCGCTGATG........................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CACCCGATGATGGCGGAGA.................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................TTCGCGGCCGGCTGATAATT......................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................AGAATACACCAATGGCAGA................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CACCCGATGATGGCGGAGACGG................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................GAAAACACATCAGCGTATGGG........................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........GAAAGCGATTCGCGGCCGGCT................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................GAATTCAACGGAAGTTAGGGAA.................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..GATGTGGAAAGCGATTCGCGGC..................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CACCCGATGATGGCGGAGAAGGAA............................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................AAACACATCAGCGTATGGGGAGGA................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................ACACATCAGCGTATGGGGAGGAGAATA.............................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................CTCCAGAGGGAACAGCAACAGCAAAT............ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................AGAGTTTAGGCACAACAGTTGTGC....................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CAATGGCAGAGGAGAGTTTAGGCA................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................GATAATTCGAATTCAACGGAAGTTCGG..................................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................GCCACCCGATGATGGCGGAGA.................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................TCAACGGAAGTTAGGGAA.................................................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................GAGGGAACAGCAACAGCAAATGGAAC....... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TGATGGCGGAGAAGGAACGTTACC........................................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................AGAAGGAACGTTACCAGCT.................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................TCGCGGCCGGCTGATAATTCGA...................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................CGGACGGTTGATACTTCGA...................................................................................................................................................................................... 19 3 8 1.00 8 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................GAAAACACATCAGCGTATGGGGA...................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GAGATGTGGAAAGCGATTC.......................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............ATTCGCGGCCGGCTGATAATTCGCA..................................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................TATCGGGTGAAAACACATC.................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CAATGGCAGAGGAGCGTTTAGGCA................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TCAGCGTATGGGGAGGAG.................................................................................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................ATAATTCGAATTCAACGGAAGTT........................................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................CGAATTCAACGGAAGTTAGGGAACTAC.............................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................CAGAGGGAACAGCAACAGC................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AGTTAGGGAACTACCAACCGCAG..................................................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AGCAACAGCAAATGGAACGGAAACT 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................CCAGAGGGAACAGCAACGGCAAATG........... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................CAACAGTTGTGCCACCCGATGATGGC......................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................CCAGAGGGAACACCAACAGCAAAT............ 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CACATCAGCGTATTGGGAGGAGA................................................................................................................. 23 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................ATTCAACGGAAGTTAGGGCACT................................................................................................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................AACGTTACCAGCTCCCGAGGGAAC......................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................AACTACCAACCGAAGTATCG................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GCTCCAGAGGGAACAGCAACAGCAA.............. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................ACACATCAGCGTATGGGGAGGA................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................ATGGCAGAGGAGAGTTTAGGC.................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GAGATGTGGAAAGCGATTCGCGGC..................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GAGAATACACCAATGGCAGAG................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CAATGGCAGAGGAGAGTTTA....................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................GGAGAGTTTAGGCACAACA.............................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................AAGTATCGGGTGAAAACACATCAGC............................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CACATCAGCGTATGGGGAGGA................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................GCCACCCGATGATGGCGGAGAAGGA................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................CAGAGGGAACAGCAACAGCAAAT............ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CACCCGATGATGGCGGAGAAGGAAC.............................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................CAGAGGAGAGTTTAGGCA................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................TAATTCGAATTCAACGGAAGTTAGGG.................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TCCAGAGGGAACAGCAACAGCAAATG........... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................GAGGTATCGGGTGAAAACAC..................................................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................ATACACCAATGGCAGAGGAGT............................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................CCAACCGAAGTATCGGGTGA........................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................ACAGAGGGAACAGCAACAGCA............... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................AACACATCAGCGTATGGGGAGGAGA................................................................................................................. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................CAACAGTTGTGCCACCCGATGATGGCGG....................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TTAGGGAACTACCAACCGA....................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CACCCGATGATGGCGGAGAAG.................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................ACGTTACCAGCTCCAGAGGGAAC......................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................ATACACCAATGGCAGAGGAGA............................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................CAGCAACAGCAAATGGAACGG..... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................CACCAATGGCAGAGGAGAGTTTAGGCA................................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....GTGGAAAGCGATTCGCGGCCC................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................CTACCAACCGAAGTATCTGGT............................................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................CGGACGGTTGATAATTCGA...................................................................................................................................................................................... 19 2 3 0.67 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................CGGACGGTTGATAATGCGA...................................................................................................................................................................................... 19 3 15 0.53 8 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................CAGCAACAGCAAATGGAAC....... 19 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AGCAACAGCAAATGGAAC....... 18 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................GAAACACATCAGCGTATG.......................................................................................................................... 18 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................CGGACGGCTTATACTTCGA...................................................................................................................................................................................... 19 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TAACAGCAACAGTAAATGGAAC....... 22 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................CGGCCGGTTGATACTCCGA...................................................................................................................................................................................... 19 3 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................GGTCCACACACATCAGCGTA............................................................................................................................ 20 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................CGGGCGGTTGATACTTCGA...................................................................................................................................................................................... 19 3 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................AATCAACGAAAGTTAGGGGA.................................................................................................................................................................. 20 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................CGGCCGGCTTACACTTCGA...................................................................................................................................................................................... 19 3 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....GTTGAAACCGATTCCCGGC..................................................................................................................................................................................................... 19 3 14 0.14 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0
....................CGGACGGTTTATAATTCGA...................................................................................................................................................................................... 19 3 14 0.14 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................CGGGCGGTTGATAATGCGA...................................................................................................................................................................................... 19 3 14 0.14 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................AATCAACGAAAGTTAGGG.................................................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................CGGACGGTTGATAATTCGG...................................................................................................................................................................................... 19 3 15 0.13 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
....................CGGACGGTTGATAATTCCA...................................................................................................................................................................................... 19 3 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................GAACGGAAGTTAGGGGATT................................................................................................................................................................ 19 3 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................ATGGTGAGAAGGATACACC.......................................................................................................... 19 3 10 0.10 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................AATTCGAATTCAACGGCAACT........................................................................................................................................................................ 21 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....................CGGCCGGGTTAAAATTCGA...................................................................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................CGGACGGTTGTTAATTCGA...................................................................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................CGGACGGCTTAAAATTCGA...................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................GAAACTTACCAGGTCCAGA............................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...........................................AACGAAAGTTAGGGATCGA............................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................CGGACCGTTGATAATTCGA...................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................GAACGAAAGTTAGGGACC................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................GAGGTATCGGGCTAAAAC....................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................AATTCAAATTCATCGGAACT......................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CTCTACACCTTTCGCTAAGCGCCGGCCGACTATTAAGCTTAAGTTGCCTTCAATCCCTTGATGGTTGGCTTCATAGCCCACTTTTGTGTAGTCGCATACCCCTCCTCTTATGTGGTTACCGTCTCCTCTCAAATCCGTGTTGTCAACACGGTGGGCTACTACCGCCTCTTCCTTGCAATGGTCGAGGTCTCCCTTGTCGTTGTCGTTTACCTTGCCTTTGA
***************************************************....(((((((((.((((...((.((...(((.............)))...)).)).....))))..((((((...)))))))))))))))...........******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M061
embryo
 V116
male body		 GSM1528803
follicle cells		 SRR060681
Argx9_testes_total
 M027
male body		 SRR060684
140x9_0-2h_embryos_total
.................................................................................................................TGTTACCATCTCCTCTAAAAT....................................................................................... 21 3 5 0.20 1 0 1 0 0 0 0
.........................................AGGTGCCGTCTATCCCTTG................................................................................................................................................................. 19 3 6 0.17 1 1 0 0 0 0 0
...........................................GTGCCTTAAATTCCTTGATG.............................................................................................................................................................. 20 3 7 0.14 1 0 0 1 0 0 0
....................................................................................................................................................CGGTGGGCTACGACCTCC....................................................... 18 2 9 0.11 1 0 0 0 1 0 0
.....................................................................................GTGTAGTCGCCTACACCAC..................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0
........................................................................................................................................................................................GGGTCTCCCTTGCCGGTGT.................. 19 3 20 0.05 1 0 0 0 0 1 0
.................................................TCAATGCCCTGCTGGTTG.......................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:6040909-6041129 + dvi_5404 GAGATGTGGAAAGCGATTCGCGGCCGGCTGATAATTCGAATTCAACGGAAGTTAGGGAACTACCAACCGAAGTATCGGGTGAAA----------------------------------------------------------------------------ACACATCA------------GCGTATGGGGAGGAGAATAC---------------------------------------------------------A------------------------CCAATGGCAGAGG---------------------------AGA-------GTTTAGGCACAACAGT------TGTGCCA------------CC---------------------------------------------------------------------------------CGATGATGGCGGAGAAGGAAC---GTT-ACCAGCTCCAGA-----GG---GAACAGCAACAGCAAATG---G------------AACGGAAACT-------
droMoj3 scaffold_6488:41671-41841 + TCAGCAGGAGCAGG--------------------------------------------------------AGGAACAACA-------------------------------------GCA------------------------------------------------------------GCAGCAGGAGCAGGA---GC---------------------------------------------------------A------------------------GCAGCAGCAGCAGGAGCAGCAG--------------------C-------AA-TAGCAGTTGCAATTGAAGGAGCA--GTAGCAGCAGGAACAGGAGGAAC-----------------AACAGCAGCAGCA------GCAG------------------CAGCAGGAGCAG-----------------------------------------------------CAG---CAATAGCAGTTG---C------------AATTGAAGGA-------
droGri2 scaffold_15203:1309767-1309957 - TCAACAACAATTGCGG-----CACCAACAACTGCAGCAGCTTCATCAGGAGCA---------------GATGCATCATCAACAAAATGAGC-A---------------------------------------------------------------GCAATTACAGCA------------GCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------CGACTGCACCAGCA--GCGGCAACTGCAGCAAGAGCACC-----------------CACGTCATCAGGAGCACCCACGTCATCAGGAGCAATTGACGCAGCAGGAGCAA-----------------------------------------------------GAG-------------------------------CAACAACAAC-------
droWil2 scf2_1100000004514:3693104-3693387 + AAAGTGTGGAAAGCGATTCGCGGCCGGCTGATAATACAAATTCAACGGAAGTT---------------GGCACATCACAAGAAAATTCGGA-T---------------------------------------------------------------GAAGCTTCGACAAATCAACCCGAAAATGAGAATGAAGGTAAAACCGACCAATTTGGGGAAAGCCCAGAAAGCGAGGAAACGACAGCAGACGAAGCACAGCTA------------------------TCGGAAGACGGAGGGGAAACG-------------------------------------------GA------AGCC--ACACAAGAACCTAACGGAGAAAC---------A--------TCAGAAGCAACC------AAGCCG------------------TCTGAAGG--------------------------------------------------AG---AAGCAACAACAGCAG------C------------TGCTGAAGCA-------
dp5 3:8772183-8772403 - AAGGTATGGAAAGCGATTCGCGGCCGATTGATAATACGAATTCAGCGGAGGTT---------------GGCGAATCGAGCTTTGAGGGGCC-GGAGCTGGAACAGCAACCGGGGGCG---GAGGGCACCGCAGCAACGGAGCCAGGAACTGAGACAGAGGG---------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------CCGGCGAAC------------------GCCCAGGAGGTCCCGGAAGAGGATCAGGTTGA---TGAG----------GCT---------CCA------------------TCTGAAGA--------------------------------------------------GG---A---------------------------AGCTGAAGAAGACACC-------
droPer2 scaffold_4:2656105-2656325 - AAGGTATGGAAAGCGATTCGCGGCCGATTGATAATACGAATTCAGCGGAGGTT---------------GGCGAATCGAGCTTTGAGGGGCC-GGAGCTGGAACAGCAACCGGGGGCG---GAGGAGGCCGCAGCAAAGGAGCCAGGAACTGAGACAGAGGG---------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------CCGGCGAAC------------------GCCCAGGAGGTCCCGGAAGAGGATCAGATTGA---TGAG----------GCT---------CCA------------------TCTGAAGA--------------------------------------------------GG---A---------------------------AGCTGAAGAAGACACC-------
droAna3 scaffold_13266:12975613-12975831 + AGAATGTGGAAAGCGACTCACGACCACTTGACAATTCGAATTCAACGGAAATT---------------GGCGAGTCGCAGGAGAACGAGCC-G---------------------------------------------------------------GGGGCGGCGACGGAG---------GTTCCTGGTGAGGGTGAGGC---------------------------------------------------------C------------------------ACGGAGCCAGACG------------------GCGAAGCGGCTG-------GTTCGGCAGCAACGA-------------A------------TT---------------------------------------------------------------------------------CGACA-----------------------GCAACGGATGACG-CAG--GCTCCACGACATCATCGGGAGCAACCGGAGCAACCGGAGCAG------------
droBip1 scf7180000396730:947312-947505 - GA-ACGTGGAAAGCGACTCACGGCCACTTGACAATTCGAATTCAACGGAAATT---------------GGCGAGTCGCCGGAGGACGAGCC-G---------------------------------------------------------------GGGGCGGCGACGAAG---------GTTCCAAGTGAGGGTGAGAC---------------------------------------------------------CACGTCGCCAGAAGGCGAAGGGGCTA----------------------------------------------------CTGGCTCGACGGA------C---G----------------------------------------------------------------------------------CCTCCAGTACGGATTCGACG-----------------------ACAACGG---------------C---------GGCC--------------------GGCGGAGGCT-------
droKik1 scf7180000302476:1117632-1117816 + AAGCGGATGAAAGCGAGTCGCGTCCACTTGACAATTCGAATTCGACGGAAATT---------------GGCACATCGGATGAGAAGGGGTTG-------------------------ACA------------------------------------------------------------GAAGCAGGCAATGAC---AC---------------------------------------------------------C------------------------ACCACCGCGGTGGACACAGCAT----------------------------------------CAGA------A---GGT------------GTCACCACAG---------AAGCGGCA----------GCC---------CCA--------------------------------------------------------------------------------------------ACAGAAGAAGCCAAGCCAACAGGAGAAGAAACC-------
droFic1 scf7180000453858:1024708-1024892 - CGAGTGTGGAGAGCGATTCGCGGCCAGCTGACAATTCGAATTCAACGGAGGTC---------------GGTTCCTCGGAGGAGGCGGAGGGG-------------------------GGAGAGGTGGGGGCGGGCACGGATGCGGAAGCTGGAGCGGAAGGCGCGGCG------------CCTGCTGGTGAGGGT-------------------------------------------------------------------------------------------------------------------------------------------GGTGCGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCGGAGGGCGGGGCGGCAGAGGGAGCAGAGGGA-------
droEle1 scf7180000491107:1393393-1393604 - AGAGTGTGGAAAGCGATTCACGGCCAGCTGATAATTCGAATTCAACGGAAATC---------------GGGTCCTCGAAGGAGGCGGAGGA-G---------------------------------------------------------------GAGGGCACGACG------------CCTGGAGGTGAGGGTCAGCA------------------------------------------------------------------------------------GCTTGAGGAGTTCGGCGGGGAGCAGGTGGGCGAGGAGGTCG-------AT---------------------------------------TCGGAGGTCGACCAGCTCGA---CCAG---------------------------------------------------------------------------------------------GAAGA---GGGAGCGACGACTCCAGCCG------C------------AGGAGAAGCC-------
droRho1 scf7180000777217:610534-610796 + AGAGTGTGGAAAGCGATTCACGGCCAACTGATAATTCGAATTCAACGGAAATC---------------GGGTACTCGGACGAGG------C-G---------------------------------------------------------------GGGCGCACGGCG------------CCTGAAGGTGATGGTGAGAC------------------------------------------------------------------------------------GCCTGCGGAGGGCGCCGGGCCGCAGGTGGGCCCGGAGGGCAACGAGGGATTGGAG----------------------GGACTGGAGGTCACGGAGGGCGGCCAGGAGG---------------GCGGC---------------------------------------------CAGGATGGCCAGGAGG---GCCAAGTACCCAATCCCGAGG-AGG--AAGCGGCGACACCCGCTG------A------------AGGAGAAGCC-------
droBia1 scf7180000301506:1001169-1001339 - ---GTGTGGAAAGCGACTCGCGGCCAGCTGATAATTCGAATTCGACGGAGATC---------------GGGGTCTCGAAGGAGAAGGAGGC-G---------------------------------------------------------------GAGGGCACGACG------------GCTGGAAGTGAGGGTCAGAC-------------------------------------------------------------------------------------------------------------------------------------------GACTCCGGA------G------------------------------------------------------------------------------------------------------------------------------GCATCCACTGCCGGCG-AAG--GCGAAACGACGCCAGCGGAAG------------------GAGAGTCCACGGCAG
droTak1 scf7180000415870:579561-579754 - ---GTGTGGAGAGCGACTCGCGGCCAGCTGACAATTCGAATTCAACGGAGATC---------------GGGGTCTCGAAGGAGGCAGAGGC-G---------------------------------------------------------------GAGGGCACGACG------------GCTGGAGGTGAGGGTGAGAC---------------------------------------------------------G------------------------ACGACGGCGGCGG----------------------------------------GCGGCACGACGAA------G---GTG------------GCTGAGAAGG---------A------------------------------------------------------------------------------------TGGGGCAACCACTGCCGCCG-GGG--GACAAACGACGCCAGCGG------------------------ACGCC-------
droEug1 scf7180000409209:461707-461907 - AGGACGTGGAGAGCGATTCACGGCCAGCTGACAATTCGAATTCAACGGAAATC---------------GGGACCTCGGACGAGGCGGAGGC-G---------------------------------------------------------------GAGGGCACGGCG------------GCTGGAGGTGAAGGTGAGTC-------------------------------------------------------------------------------------------------------------------------------------------GCCGGCAGA------GCCAGTG------------TA---------------------------------------------------------------------------------CGAACATGGGATGCATGACGGAGATACAACCAAAGCCGATG-AAG--GCCAAACGACGCCAGCGGAGG---G------------AGCG--ACGG-------
dm3 chr2R:5705569-5705771 + AAAGTGTGGAGAGCGATTCACGGCCAGCTGACAATTCGAATTCAACGGAAATC---------------GGGGTCTCGAAGGAGAAGGAAGC-G---------------------------------------------------------------GAGGGCGCGCCG------------ACTCCAGGTGATGGT-------------------------------------------------------------------------------------------------------------------------------------------GGTGGCACCACGGA------GCCCGTG------------TT---------------------------------------------------------------------------------CGAGAATGGCATGGAAAACGCCGCGGAACCCATTGCCGAGC-AGG--AGCAAACGGTGCCGCCAGGCG---G------------CACGGGTCCA-------
droSim2 2r:6483473-6483675 + AAAGTGTGGAGAGCGATTCACGGCCAGCTGACAATTCGAATTCAACGGAAATC---------------GGGGAATCGAAGGAGAAGGAAGC-G---------------------------------------------------------------GAGGGCGCGTCG------------ACTCCAGGTGATGGT-------------------------------------------------------------------------------------------------------------------------------------------GGTGGCACCACGGA------GCCCGTG------------TT---------------------------------------------------------------------------------CGAGAACGGCATGGAAAACGCCGGGGAACCCATTGCCGAGC-AGG--ACCAAACGGTGCCGCCAGGCG---G------------CACGGGTCCA-------
droSec2 scaffold_1:3314527-3314729 + AAAGTGTGGAGAGCGATTCACGGCCAGCTGACAATTCGAATTCAACGGAAATC---------------GGGGAATCGAAGGAGAAGGAAGC-G---------------------------------------------------------------GAGGGCTCGTCG------------ACTCCAGGTGATGGT-------------------------------------------------------------------------------------------------------------------------------------------GGTGGCACCACGGA------GCCCGTG------------TT---------------------------------------------------------------------------------CGAGAACGGCATGGAAAACGCCGGGGAAGCCATTGCCGAGC-AGG--ACCAAACGGTGCCGCCAGGCG---G------------CACGGGTCCA-------
droYak3 2L:18330835-18331011 + AAAGTGTGGAGAGCGATTCACGGCCAGCTGACAATTCGAATTCAACGGAAATC---------------GGGGTCTCGGAGGAGAAGAAAAC-G---------------------------------------------------------------GAGGGCGCGCCG------------TCTGGAGGTGATGGT-------------------------------------------------------------------------------------------------------------------------------------------GGTGGCACCACGGA------GCCGGTG------------TT---------------------------------------------------------------------------------CGAGAACGGCATGGGAAACGCGGGGGCCACCAACGCCGAGG-AGG--CCCAGA------------------------------------------------
droEre2 scaffold_4929:8660477-8660682 - AAAGTGTGGAGAGCGATTCACGGCCAGCTGACAATTCGAATTCAACGGAAATC---------------GGGGTCTCGGAGGAGAAAAACCC-G---------------------------------------------------------------GAGGGCGAGACG------------ACTGCAGGTGCTGGT-------------------------------------------------------------------------------------------------------------------------------------------GGTGGCACCACGGA------GCCGGTG------------TT---------------------------------------------------------------------------------CGAGAACGGCATGGGAAACGCCGGGGCAACCAATGCCGCGG-AGG--GCCAAACGGTGCCGCCAGGCGGAGG------------CACGGGTGCA-------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GAGATGTGGAAAGCGATTCGCGGCCGGCTGATAATTCGAATTCAACGGAAGTTAGGGAACTACCAACCGAAGTATCGGGTGAAA----------------------------------------------------------------------------ACACATCA------------GCGTATGGGGAGGAGAATAC---------------------------------------------------------A------------------------CCAATGGCAGAGG---------------------------AGA-------GTTTAGGCACAACAGT------TGTGCCA------------CC---------------------------------------------------------------------------------CGATGATGGCGGAGAAGGAAC---GTT-ACCAGCTCCAGA-----GG---GAACAGCAACAGCAAATG---G------------AACGGAAACT-------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGGAAC---GTT-ACCAGCT..................................................................2018.008000001000200000000000000000001000400000000000000000000000000000
..............GATTCGCGGCCGGCTGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1816.006100004000000000000000000000000000100000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT-ACCAGCTCCAGA-----GG---GAA................................................2016.006000001000000000000000000000000000500000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAAC---GTT-ACCAGCT..................................................................1816.006000002000000000000000000000000000400000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................CA------------CC---------------------------------------------------------------------------------CGATGATGGCGGAGAA.....................................................................................2014.004000003000000000000000000000000000100000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGA-----GG---GAACAGCAACAGCAAATG---..............................2514.004000001000100000000000000000000000200000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGCGGAGAAGGAAC---GT...........................................................................1913.003000001000100000000000000000000000100000000000000000000000000000
....................................................................GAAGTATCGGGTGAAA----------------------------------------------------------------------------ACAC.........................................................................................................................................................................................................................................................................................................................................................................................................2013.003000000002100000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................A------------CC---------------------------------------------------------------------------------CGATGATGGCGGAGAAGG...................................................................................2113.003000000000000000000000000000000000300000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGA-----GG---GAACAGCAACAGC......................................2013.003000001000000000000000000000000000200000000000000000000000000000
...................................................................................................................................................................................................AATAC---------------------------------------------------------A------------------------CCAATGGCAGAGG---------------------------AGA-------GT...............................................................................................................................................................................................................................2413.003000000000000000000000000000000000300000000000000000000000000000
....................................................................................................................................................................ATCA------------GCGTATGGGGAGGA...........................................................................................................................................................................................................................................................................................................................................................................1813.003000000000300000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGA-----GG---GAACAGCAACAGCAAATG---G------------A................2713.003000000000000000000000000000000000300000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAAC---GTT-ACCAGCTC.................................................................1913.003000000000000000000000000000000000300000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAGCAAATG---G------------AACGGA...........2313.003000001000000000000000000000000000200000000000000000000000000000
............................................................TACCAACCGAAGTATCGGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.003000002000000000000000000000000000000000100000000000000000000000
...................................................................CGAAGTATCGGGTGAAA----------------------------------------------------------------------------ACAC.........................................................................................................................................................................................................................................................................................................................................................................................................2112.002000002000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGA-----GG---GAACAGCAACAGCAAAT..................................2412.002000000000000000000000000000000010100000000000000000000000000000
GAGATGTGGAAAGCGATTCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000001000100000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAAATG---G------------AACGGAAA.........2312.002000001000000000000000000000000000100000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGAAGGAAC---GTT-ACCAGCT..................................................................2112.002000000000100000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................AC---------------------------------------------------------A------------------------CCAATGGCAGAGG---------------------------AGA-------GTTTA............................................................................................................................................................................................................................2412.002000000000000000000000000000000000000000200000000000000000000000
...................................................................................................................................................................................................................................................................................................................................GA-------GTTTAGGCACAACAGT------TGTG.......................................................................................................................................................................................................2212.002000000000000000000000000000000000200000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---GTT-ACCAGCTCCAGA-----GG---GA.................................................2112.002000002000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAAATG---G------------AACGGA...........2112.002000001000000000000000000000000000100000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGA-----GG---GAACAGCAACA........................................1812.002000000000100000000000000000000000100000000000000000000000000000
...........................................AACGGAAGTTAGGGAACTAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000000010100000000000000000000000000000000000000000000000000000
..GATGTGGAAAGCGATTCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000002000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................GA-------GTTTAGGCACAACAGT------...........................................................................................................................................................................................................1812.002000000000000000000000000000000000200000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................GTGCCA------------CC---------------------------------------------------------------------------------CGATGATGGCGGA........................................................................................2112.002000002000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................AGAATAC---------------------------------------------------------A------------------------CCAATGGCAGAGG---------------------------AGA-------GT...............................................................................................................................................................................................................................2612.002000000000000000000000000000000000200000000000000000000000000000
..........................................................ACTACCAACCGAAGTATCGGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000002000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................ACATCA------------GCGTATGGGGAG.............................................................................................................................................................................................................................................................................................................................................................................1812.002000001000000000000000000000000000100000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAAATG---G------------AACGGA...........1912.002000001000000000000000000000000000100000000000000000000000000000
..................................................................................................................................................................ACATCA------------GCGTATGGGGAGGA...........................................................................................................................................................................................................................................................................................................................................................................2012.002000001000000000000000000000000000000000100000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGA-----GG---GAACAGCAACAG.......................................1912.002000002000000000000000000000000000000000000000000000000000000000
....................................CGAATTCAACGGAAGTTAGGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000002000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGATGGCGGAGAAGGA..................................................................................1912.002000000000100000000000000000000000100000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---GTT-ACCAGCTCCAGA-----GG---GA.................................................2012.002000001000000000000000000000000000100000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCGGAGAAGGAAC---GT...........................................................................1812.002000000020000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGATGGCGGAGAAGG...................................................................................1812.002000001000100000000000000000000000000000000000000000000000000000
.............CGATTCGCGGCCGGCTGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000002000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGA-----GG---GAACAGCAACAGCAAATG---G------------.................2612.002000000000000000000000000000000000200000000000000000000000000000
................................................................................GAAA----------------------------------------------------------------------------ACACATCA------------GCGTATGG.................................................................................................................................................................................................................................................................................................................................................................................2012.002000000000000000000000000000000000200000000000000000000000000000
.........................................TCAACGGAAGTTAGGGAACTACCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002000002000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGAGAAGGAAC---GTT-ACCAGCT..................................................................2412.002000000000000000000000000000000000200000000000000000000000000000
.....GTGGAAAGCGATTCGCGGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000001000100000000000000000000000000000000000000000000000000000
.......................................ATTCAACGGAAGTTAGGGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000002000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................GAATAC---------------------------------------------------------A------------------------CCAATGGCAGAGG---------------------------AGA-------.................................................................................................................................................................................................................................2312.002000000000000000000000000000000000200000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGATGGCGGAGAAGGAAC---.............................................................................2112.002000000000000000000000000000000000200000000000000000000000000000
.....................................GAATTCAACGGAAGTTAGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000002000000000000000000000000000000000000000000000000000000000
.............................................................ACCAACCGAAGTATCGGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001000000000000000000000000000000000000000000000000000000000
.AGATGTGGAAAGCGATTCGCGGCCGGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................ATAC---------------------------------------------------------A------------------------CCAATGGCAGAGG---------------------------AGA-------GTT..............................................................................................................................................................................................................................2411.001000000000100000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................C---------------------------------------------------------------------------------CGATGATGGCGGAGAAG....................................................................................1811.001000000000100000000000000000000000000000000000000000000000000000
..GATGTGGAAAGCGATTCGCGGCCGGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAATG---G------------AACGGAAACT-------1911.001000000000100000000000000000000000000000000000000000000000000000
..............................................................................GTGAAA----------------------------------------------------------------------------ACACATCA------------GCGTATGGGGA..............................................................................................................................................................................................................................................................................................................................................................................2511.001000001000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................A------------CC---------------------------------------------------------------------------------CGATGATGGCGGAGAAG....................................................................................2011.001000001000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA-----GG---GAACAGCAACAGCAAAT..................................2211.001000000000100000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................AGAGG---------------------------AGA-------GTTTAGGCAC.......................................................................................................................................................................................................................1811.001000001000000000000000000000000000000000000000000000000000000000
.....GTGGAAAGCGATTCGCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000100000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAAATG---G------------AACGGA...........1811.001000000000100000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................GTTTAGGCACAACAGT------TGTG.......................................................................................................................................................................................................2011.001000000000000000000000000000000000100000000000000000000000000000
..................................................................................................................................................................................................GAATAC---------------------------------------------------------A------------------------CCAATGGCAGAG.......................................................................................................................................................................................................................................................................1911.001000001000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................GTTTAGGCACAACAGT------TGT........................................................................................................................................................................................................1911.001000000000000000000000000000000000100000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-----GG---GAACAGCAACAGCAAATG---..............................2211.001000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGCAACAGCAAATG---G------------AACGGAA..........2611.001000000000000000000000000000000000100000000000000000000000000000
...............................................GAAGTTAGGGAACTACCAACCGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGA-----GG---GAACAGCAACAGCA.....................................2111.001000000000000000000000000000000000100000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................A------------CC---------------------------------------------------------------------------------CGATGATGGCGGAGAAGGAAC---GTT-.........................................................................2711.001000000000100000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................AACAGT------TGTGCCA------------CC---------------------------------------------------------------------------------CGATGATG.............................................................................................2311.001000000000000000000000000000000000100000000000000000000000000000
....................................CGAATTCAACGGAAGTTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000100000000000000000000000000000
.................................................................................AAA----------------------------------------------------------------------------ACACATCA------------GCGTATGGGGA..............................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000100000000000000000000000000000
....................................................................GAAGTATCGGGTGAAA----------------------------------------------------------------------------ACACATCA------------GC.......................................................................................................................................................................................................................................................................................................................................................................................2611.001000000010000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................CCA------------CC---------------------------------------------------------------------------------CGATGATGGCGGAGAA.....................................................................................2111.001000001000000000000000000000000000000000000000000000000000000000
..................................................................................AA----------------------------------------------------------------------------ACACATCA------------GCGTATGGGGA..............................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000100000000000000000000000
.................................................................................................................................................................................................AGAATAC---------------------------------------------------------A------------------------CCAATGGCAGAGG---------------------------AGA-------.................................................................................................................................................................................................................................2411.001000000000000000000000000000000000100000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAAATG---G------------AACGGAA..........2111.001000000000100000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................ATAC---------------------------------------------------------A------------------------CCAATGGCAGAGG---------------------------AGA-------GTTTAG...........................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---GTT-ACCAGCTCCAGA-----GG---GAA................................................2311.001000000000000000000000000000000000100000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................CA------------CC---------------------------------------------------------------------------------CGATGATGGCGGAGA......................................................................................1911.001000001000000000000000000000000000000000000000000000000000000000
................TTCGCGGCCGGCTGATAATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................AGAATAC---------------------------------------------------------A------------------------CCAATGGCAGA........................................................................................................................................................................................................................................................................1911.001000001000000000000000000000000000000000000000000000000000000000
................................................................................GAAA----------------------------------------------------------------------------ACACATCA------------GCGTATGGG................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000100000000000000000000000000000
........GAAAGCGATTCGCGGCCGGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001000000000000000000000000000000000000000000000000000000000
.....................................GAATTCAACGGAAGTTAGGGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000100000000000000000000000000000
..GATGTGGAAAGCGATTCGCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................CA------------CC---------------------------------------------------------------------------------CGATGATGGCGGAGAAGGAA.................................................................................2411.001000000000100000000000000000000000000000000000000000000000000000
..................................................................................AA----------------------------------------------------------------------------ACACATCA------------GCGTATGGGGAGGA...........................................................................................................................................................................................................................................................................................................................................................................2411.001000001000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................ACACATCA------------GCGTATGGGGAGGAGAATA......................................................................................................................................................................................................................................................................................................................................................................2711.001000001000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAGA-----GG---GAACAGCAACAGCAAAT..................................2611.001000000000000000000000000000000000100000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................AGA-------GTTTAGGCACAACAGT------TGTGC......................................................................................................................................................................................................2411.001000000000100000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................CAATGGCAGAGG---------------------------AGA-------GTTTAGGCA........................................................................................................................................................................................................................2411.001000000000000000000000000000000000100000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................GCCA------------CC---------------------------------------------------------------------------------CGATGATGGCGGAGA......................................................................................2111.001000001000000000000000000000000000000000000000000000000000000000
.........................................TCAACGGAAGTTAGGGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-----GG---GAACAGCAACAGCAAATG---G------------AAC..............2611.001000000010000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGGCGGAGAAGGAAC---GTT-ACC......................................................................2411.001000000000100000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGAAC---GTT-ACCAGCT..................................................................1911.001000000000100000000000000000000000000000000000000000000000000000
.................TCGCGGCCGGCTGATAATTCGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000100000000000000000000000000000
................................................................................GAAA----------------------------------------------------------------------------ACACATCA------------GCGTATGGGGA..............................................................................................................................................................................................................................................................................................................................................................................2311.001000001000000000000000000000000000000000000000000000000000000000
GAGATGTGGAAAGCGATTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000100000000000000000000000000000000000000000000000000000
........................................................................TATCGGGTGAAA----------------------------------------------------------------------------ACACATC......................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000100000000000000000000000000000
.....................................................................................................................................................................TCA------------GCGTATGGGGAGGAG..........................................................................................................................................................................................................................................................................................................................................................................1811.001000000010000000000000000000000000000000000000000000000000000000
..............................ATAATTCGAATTCAACGGAAGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001000000000000000000000000000000000000000000000000000000000
....................................CGAATTCAACGGAAGTTAGGGAACTAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGA-----GG---GAACAGCAACAGC......................................1911.001000000000000000000001000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAAATG---G------------AACGGAAACT-------2511.001000000000100000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................CAACAGT------TGTGCCA------------CC---------------------------------------------------------------------------------CGATGATGGC...........................................................................................2611.001000000000000000000000000000000000100000000000000000000000000000
.........................................................AACTACCAACCGAAGTATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000100000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCAGA-----GG---GAACAGCAACAGCAA....................................2511.001000000000000000000000000000000000100000000000000000000000000000
................................................................................................................................................................ACACATCA------------GCGTATGGGGAGGA...........................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000100000000000000000000000000000
.............................................................................................................................................................................................................................................................................................ATGGCAGAGG---------------------------AGA-------GTTTAGGC.........................................................................................................................................................................................................................2111.001000000000000000000000000000000000100000000000000000000000000000
GAGATGTGGAAAGCGATTCGCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000100000000000000000000000000000
................................................................................................................................................................................................GAGAATAC---------------------------------------------------------A------------------------CCAATGGCAGAG.......................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000100000000000000000000000000000
...........................................................................................................................................................................................................................................................................................CAATGGCAGAGG---------------------------AGA-------GTTTA............................................................................................................................................................................................................................2011.001000000000000000000000000000000000100000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................GG---------------------------AGA-------GTTTAGGCACAACA...................................................................................................................................................................................................................1911.001000000000000000000000000000000000100000000000000000000000000000
.....................................................................AAGTATCGGGTGAAA----------------------------------------------------------------------------ACACATCA------------GC.......................................................................................................................................................................................................................................................................................................................................................................................2511.001000001000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................CACATCA------------GCGTATGGGGAGGA...........................................................................................................................................................................................................................................................................................................................................................................2111.001000001000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................GCCA------------CC---------------------------------------------------------------------------------CGATGATGGCGGAGAAGGA..................................................................................2511.001000000000000000000000000000000000100000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGA-----GG---GAACAGCAACAGCAAAT..................................2311.001000000000000000000000000000000000100000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................CA------------CC---------------------------------------------------------------------------------CGATGATGGCGGAGAAGGAAC---.............................................................................2511.001000000000000000000000000000000000100000000000000000000000000000
.................................................................................................................................................................................................................................................................................................CAGAGG---------------------------AGA-------GTTTAGGCA........................................................................................................................................................................................................................1811.001000001000000000000000000000000000000000000000000000000000000000
...............................TAATTCGAATTCAACGGAAGTTAGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGA-----GG---GAACAGCAACAGCAAATG---..............................2611.001000001000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................ATAC---------------------------------------------------------A------------------------CCAATGGCAGAGG---------------------------AGT-------.................................................................................................................................................................................................................................2111.001000000000000000000000000000000000100000000000000000000000000000
..............................................................CCAACCGAAGTATCGGGTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001000000000000000000000000000000000000000000000000000000000
...................................................................................A----------------------------------------------------------------------------ACACATCA------------GCGTATGGGGAGGAGA.........................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000100000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................CAACAGT------TGTGCCA------------CC---------------------------------------------------------------------------------CGATGATGGCGG.........................................................................................2811.001000000010000000000000000000000000000000000000000000000000000000
...................................................TTAGGGAACTACCAACCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................CA------------CC---------------------------------------------------------------------------------CGATGATGGCGGAGAAG....................................................................................2111.001000000000000000000000000000000000100000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---GTT-ACCAGCTCCAGA-----GG---GAAC...............................................2311.001000001000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................ATAC---------------------------------------------------------A------------------------CCAATGGCAGAGG---------------------------AGA-------.................................................................................................................................................................................................................................2111.001000001000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAAATG---G------------AACGG............2111.001000001000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................C---------------------------------------------------------A------------------------CCAATGGCAGAGG---------------------------AGA-------GTTTAGGCA........................................................................................................................................................................................................................2711.001000000000000000000000000000000010000000000000000000000000000000
.....GTGGAAAGCGATTCGCGGCCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAAATG---G------------AAC..............1920.501000000000000000000000000000000000100000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAAATG---G------------AAC..............1820.501000000000000000000000000000000010000000000000000000000000000000
droMoj3
TCAGCAGGAGCAGG--------------------------------------------------------AGGAACAACA-------------------------------------GCA------------------------------------------------------------GCAGCAGGAGCAGGA---GC---------------------------------------------------------A------------------------GCAGCAGCAGCAGGAGCAGCAG--------------------C-------AA-TAGCAGTTGCAATTGAAGGAGCA--GTAGCAGCAGGAACAGGAGGAAC-----------------AACAGCAGCAGCA------GCAG------------------CAGCAGGAGCAG-----------------------------------------------------CAG---CAATAGCAGTTG---C------------AATTGAAGGA-------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................GCAGCAGGAACAGGAGG.................................................................................................................................................................................1730.331000100
...............................................................................A-------------------------------------GCA------------------------------------------------------------GCAGCAGGAGCAGGA---.......................................................................................................................................................................................................................................................................................................................................................................19200.051000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------------CAGCAGGAGCAG-----------------------------------------------------CAG---CA...........................................19200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA------GCAG------------------CAGCAGGAGC..........................................................................................................23200.051000010
droGri2
TCAACAACAATTGCGG-----CACCAACAACTGCAGCAGCTTCATCAGGAGCA---------------GATGCATCATCAACAAAATGAGC-A---------------------------------------------------------------GCAATTACAGCA------------GCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------CGACTGCACCAGCA--GCGGCAACTGCAGCAAGAGCACC-----------------CACGTCATCAGGAGCACCCACGTCATCAGGAGCAATTGACGCAGCAGGAGCAA-----------------------------------------------------GAG-------------------------------CAACAACAAC-------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AAAGTGTGGAAAGCGATTCGCGGCCGGCTGATAATACAAATTCAACGGAAGTT---------------GGCACATCACAAGAAAATTCGGA-T---------------------------------------------------------------GAAGCTTCGACAAATCAACCCGAAAATGAGAATGAAGGTAAAACCGACCAATTTGGGGAAAGCCCAGAAAGCGAGGAAACGACAGCAGACGAAGCACAGCTA------------------------TCGGAAGACGGAGGGGAAACG-------------------------------------------GA------AGCC--ACACAAGAACCTAACGGAGAAAC---------A--------TCAGAAGCAACC------AAGCCG------------------TCTGAAGG--------------------------------------------------AG---AAGCAACAACAGCAG------C------------TGCTGAAGCA-------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................AGAAAGCGAGGAAACGACAGC...........................................................................................................................................................................................................................................................................................................................2112.00200200
...........................................................................................................................................................................................................................................................................................................AACG-------------------------------------------GA------AGCC--ACACAAGAACCTAAC......................................................................................................................................................................................2512.00220000
...........................................................................................................................................................................................................................................................................................................AACG-------------------------------------------GA------AGCC--ACACAAGAACC..........................................................................................................................................................................................2111.00110000
......................................................................................................................................................................................................................................................GAAGCACAGCTA------------------------TCGGAAGAC..........................................................................................................................................................................................................................................................................2111.00110000
...........................................................................................................................................................................................................................................................................................................AACG-------------------------------------------GA------AGCC--ACACAAGAAC...........................................................................................................................................................................................2011.00110000
......................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACC------AAGCCG------------------TCTGAAGG--------------------------------------------------........................................................2111.00110000
..........................................................................................................................................................................................................................................................................................................................................................................................................................ACC------AAGCCG------------------TCTGAAGG--------------------------------------------------AG---AAGC...............................................2311.00100100
...............................................................................................................................................................................................................................................AGCAGACGAAGCACAGCTA------------------------TCGGAAGA...........................................................................................................................................................................................................................................................................2711.00100100
...................................................................................................................................................................................................................................CGAGGAAACGACAGCAGAC.......................................................................................................................................................................................................................................................................................................................1911.00100100
.......GGAAAGCGATTCGCGGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
...........................................................................................................................................................................................................................................................................................................................................................................CAAGAACCTAACGGAGAAAC---------A--------TCAGAAGC....................................................................................................................................................2911.00110000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---AAGCAACAACAGCAG------C------------TGCT.............2211.00100100
..........................................................................................................................................................................................................................................................CACAGCTA------------------------TCGGAAGACGGAGG.....................................................................................................................................................................................................................................................................2211.00100100
................................................................................................................................................................................................................................................GCAGACGAAGCACAGCTA------------------------TCGGAAG............................................................................................................................................................................................................................................................................2511.00100100
.........................................................................................................................................................................................................................................AACGACAGCAGACGAAGCACAGCT............................................................................................................................................................................................................................................................................................................2411.00110000
........................................................................................................................................................................................................................................................................................................................................................................................................A--------TCAGAAGCAACC------AAGCCG------------------TC................................................................................................................2111.00100100
................................................................................................................................................................................................................................................GCAGACGAAGCACAGCTA------------------------TCGGAAGA...........................................................................................................................................................................................................................................................................2611.00100100
........................................................................................................................................................................AATCAACCCGAAAATGAGAATGAAGGT..........................................................................................................................................................................................................................................................................................................................................................................2711.00100100
.....GTGGAAAGCGATTCGCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
.......................................................................ACATCACAAGAAAATTCGGA-T---------------------------------------------------------------.................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
........................................................................................................................................................................................................................................................................................................................................................................................................................CAACC------AAGCCG------------------TCTGAAGG--------------------------------------------------AG---AAG................................................2411.00100100
dp5
AAGGTATGGAAAGCGATTCGCGGCCGATTGATAATACGAATTCAGCGGAGGTT---------------GGCGAATCGAGCTTTGAGGGGCC-GGAGCTGGAACAGCAACCGGGGGCG---GAGGGCACCGCAGCAACGGAGCCAGGAACTGAGACAGAGGG---------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------CCGGCGAAC------------------GCCCAGGAGGTCCCGGAAGAGGATCAGGTTGA---TGAG----------GCT---------CCA------------------TCTGAAGA--------------------------------------------------GG---A---------------------------AGCTGAAGAAGACACC-------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................AACGGAGCCAGGAACTGAGAC..................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
droPer2
AAGGTATGGAAAGCGATTCGCGGCCGATTGATAATACGAATTCAGCGGAGGTT---------------GGCGAATCGAGCTTTGAGGGGCC-GGAGCTGGAACAGCAACCGGGGGCG---GAGGAGGCCGCAGCAAAGGAGCCAGGAACTGAGACAGAGGG---------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------CCGGCGAAC------------------GCCCAGGAGGTCCCGGAAGAGGATCAGATTGA---TGAG----------GCT---------CCA------------------TCTGAAGA--------------------------------------------------GG---A---------------------------AGCTGAAGAAGACACC-------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
AGAATGTGGAAAGCGACTCACGACCACTTGACAATTCGAATTCAACGGAAATT---------------GGCGAGTCGCAGGAGAACGAGCC-G---------------------------------------------------------------GGGGCGGCGACGGAG---------GTTCCTGGTGAGGGTGAGGC---------------------------------------------------------C------------------------ACGGAGCCAGACG------------------GCGAAGCGGCTG-------GTTCGGCAGCAACGA-------------A------------TT---------------------------------------------------------------------------------CGACA-----------------------GCAACGGATGACG-CAG--GCTCCACGACATCATCGGGAGCAACCGGAGCAACCGGAGCAG------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................AGGAGAACGAGCC-G---------------------------------------------------------------GGGGCGG..........................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACGGATGACG-CAG--GC....................................................1811.001000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACGACATCATCGGGAGCAACCGGA.........................2711.001000010
................................................AAATT---------------GGCGAGTCGCAGGAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
.....................................GAATTCAACGGAAATT---------------GGCGAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
droBip1
GA-ACGTGGAAAGCGACTCACGGCCACTTGACAATTCGAATTCAACGGAAATT---------------GGCGAGTCGCCGGAGGACGAGCC-G---------------------------------------------------------------GGGGCGGCGACGAAG---------GTTCCAAGTGAGGGTGAGAC---------------------------------------------------------CACGTCGCCAGAAGGCGAAGGGGCTA----------------------------------------------------CTGGCTCGACGGA------C---G----------------------------------------------------------------------------------CCTCCAGTACGGATTCGACG-----------------------ACAACGG---------------C---------GGCC--------------------GGCGGAGGCT-------SizeHit CountTotal NormTotal
No Reads
droKik1
AAGCGGATGAAAGCGAGTCGCGTCCACTTGACAATTCGAATTCGACGGAAATT---------------GGCACATCGGATGAGAAGGGGTTG-------------------------ACA------------------------------------------------------------GAAGCAGGCAATGAC---AC---------------------------------------------------------C------------------------ACCACCGCGGTGGACACAGCAT----------------------------------------CAGA------A---GGT------------GTCACCACAG---------AAGCGGCA----------GCC---------CCA--------------------------------------------------------------------------------------------ACAGAAGAAGCCAAGCCAACAGGAGAAGAAACC-------SizeHit CountTotal NormTotal
No Reads
droFic1
CGAGTGTGGAGAGCGATTCGCGGCCAGCTGACAATTCGAATTCAACGGAGGTC---------------GGTTCCTCGGAGGAGGCGGAGGGG-------------------------GGAGAGGTGGGGGCGGGCACGGATGCGGAAGCTGGAGCGGAAGGCGCGGCG------------CCTGCTGGTGAGGGT-------------------------------------------------------------------------------------------------------------------------------------------GGTGCGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCGGAGGGCGGGGCGGCAGAGGGAGCAGAGGGA-------SizeHit CountTotal NormTotal
No Reads
droEle1
AGAGTGTGGAAAGCGATTCACGGCCAGCTGATAATTCGAATTCAACGGAAATC---------------GGGTCCTCGAAGGAGGCGGAGGA-G---------------------------------------------------------------GAGGGCACGACG------------CCTGGAGGTGAGGGTCAGCA------------------------------------------------------------------------------------GCTTGAGGAGTTCGGCGGGGAGCAGGTGGGCGAGGAGGTCG-------AT---------------------------------------TCGGAGGTCGACCAGCTCGA---CCAG---------------------------------------------------------------------------------------------GAAGA---GGGAGCGACGACTCCAGCCG------C------------AGGAGAAGCC-------SizeHit CountTotal NormTotal
No Reads
droRho1
AGAGTGTGGAAAGCGATTCACGGCCAACTGATAATTCGAATTCAACGGAAATC---------------GGGTACTCGGACGAGG------C-G---------------------------------------------------------------GGGCGCACGGCG------------CCTGAAGGTGATGGTGAGAC------------------------------------------------------------------------------------GCCTGCGGAGGGCGCCGGGCCGCAGGTGGGCCCGGAGGGCAACGAGGGATTGGAG----------------------GGACTGGAGGTCACGGAGGGCGGCCAGGAGG---------------GCGGC---------------------------------------------CAGGATGGCCAGGAGG---GCCAAGTACCCAATCCCGAGG-AGG--AAGCGGCGACACCCGCTG------A------------AGGAGAAGCC-------SizeHit CountTotal NormTotal
No Reads
droBia1
---GTGTGGAAAGCGACTCGCGGCCAGCTGATAATTCGAATTCGACGGAGATC---------------GGGGTCTCGAAGGAGAAGGAGGC-G---------------------------------------------------------------GAGGGCACGACG------------GCTGGAAGTGAGGGTCAGAC-------------------------------------------------------------------------------------------------------------------------------------------GACTCCGGA------G------------------------------------------------------------------------------------------------------------------------------GCATCCACTGCCGGCG-AAG--GCGAAACGACGCCAGCGGAAG------------------GAGAGTCCACGGCAGSizeHit CountTotal NormTotal
No Reads
droTak1
---GTGTGGAGAGCGACTCGCGGCCAGCTGACAATTCGAATTCAACGGAGATC---------------GGGGTCTCGAAGGAGGCAGAGGC-G---------------------------------------------------------------GAGGGCACGACG------------GCTGGAGGTGAGGGTGAGAC---------------------------------------------------------G------------------------ACGACGGCGGCGG----------------------------------------GCGGCACGACGAA------G---GTG------------GCTGAGAAGG---------A------------------------------------------------------------------------------------TGGGGCAACCACTGCCGCCG-GGG--GACAAACGACGCCAGCGG------------------------ACGCC-------SizeHit CountTotal NormTotal
No Reads
droEug1
AGGACGTGGAGAGCGATTCACGGCCAGCTGACAATTCGAATTCAACGGAAATC---------------GGGACCTCGGACGAGGCGGAGGC-G---------------------------------------------------------------GAGGGCACGGCG------------GCTGGAGGTGAAGGTGAGTC-------------------------------------------------------------------------------------------------------------------------------------------GCCGGCAGA------GCCAGTG------------TA---------------------------------------------------------------------------------CGAACATGGGATGCATGACGGAGATACAACCAAAGCCGATG-AAG--GCCAAACGACGCCAGCGGAGG---G------------AGCG--ACGG-------SizeHit CountTotal NormTotal
No Reads
dm3
AAAGTGTGGAGAGCGATTCACGGCCAGCTGACAATTCGAATTCAACGGAAATC---------------GGGGTCTCGAAGGAGAAGGAAGC-G---------------------------------------------------------------GAGGGCGCGCCG------------ACTCCAGGTGATGGT-------------------------------------------------------------------------------------------------------------------------------------------GGTGGCACCACGGA------GCCCGTG------------TT---------------------------------------------------------------------------------CGAGAATGGCATGGAAAACGCCGCGGAACCCATTGCCGAGC-AGG--AGCAAACGGTGCCGCCAGGCG---G------------CACGGGTCCA-------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACGGTGCCGCCAGGC..................................19135.0035000000000000000000000000000000000000000000000000000000000251000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACGGTGCCGCCAGGCG---..............................2017.0070000000000000000000000000000000000000000000000000000000006100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACGGTGCCGCCAGG...................................1812.0020000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACGGTGCCGCCAGGCG---G------------C................2212.0020000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................TGGT-------------------------------------------------------------------------------------------------------------------------------------------GGTGGCACCACGGA------GCCCGT.....................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.AAGTGTGGAGAGCGATTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
....TGTGGAGAGCGATTCACGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................AGGGCGCGCCG------------ACTCCAGGTG...............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..............................................................................................................................................................................................ATGGT-------------------------------------------------------------------------------------------------------------------------------------------GGTGGCACCACGGA------GCCCGT.....................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.........................................TCAACGGAAATC---------------GGGGTCTCGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.......................................................................................................................................................................................................................................................................................................................................................ACGGA------GCCCGTG------------TT---------------------------------------------------------------------------------CGAG.................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCGAGC-AGG--AGCAAACGGTT...........................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TCGAATTCAACGGAAATC---------------GGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AAAGTGTGGAGAGCGATTCACGGCCAGCTGACAATTCGAATTCAACGGAAATC---------------GGGGAATCGAAGGAGAAGGAAGC-G---------------------------------------------------------------GAGGGCGCGTCG------------ACTCCAGGTGATGGT-------------------------------------------------------------------------------------------------------------------------------------------GGTGGCACCACGGA------GCCCGTG------------TT---------------------------------------------------------------------------------CGAGAACGGCATGGAAAACGCCGGGGAACCCATTGCCGAGC-AGG--ACCAAACGGTGCCGCCAGGCG---G------------CACGGGTCCA-------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................ATC---------------GGGGAATCGAAGGAGAAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCCGAGC-AGG--ACCAAA................................................1911.00100001000000000000
..................................................ATC---------------GGGGAATCGAAGGAGAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
...........................................................................CGAAGGAGAAGGAAGC-G---------------------------------------------------------------GAGGGCGCG........................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000001000
droSec2
AAAGTGTGGAGAGCGATTCACGGCCAGCTGACAATTCGAATTCAACGGAAATC---------------GGGGAATCGAAGGAGAAGGAAGC-G---------------------------------------------------------------GAGGGCTCGTCG------------ACTCCAGGTGATGGT-------------------------------------------------------------------------------------------------------------------------------------------GGTGGCACCACGGA------GCCCGTG------------TT---------------------------------------------------------------------------------CGAGAACGGCATGGAAAACGCCGGGGAAGCCATTGCCGAGC-AGG--ACCAAACGGTGCCGCCAGGCG---G------------CACGGGTCCA-------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAAAACGCCGGGGAAGCC......................................................................2112.0020200
.........AGAGCGATTCACGGCCAGCTGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
.............................................................................................................................................................................................GATGGT-------------------------------------------------------------------------------------------------------------------------------------------GGTGGCACCACGGA------GCCCGT.....................................................................................................................................................................................................2611.0010100
............................................................................GAAGGAGAAGGAAGC-G---------------------------------------------------------------GAGGGCTCGTC......................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100
..................................................................................................................................................................TCGTCG------------ACTCCAGGTGATGGT-------------------------------------------------------------------------------------------------------------------------------------------GGT............................................................................................................................................................................................................................2411.0010100
...................................................................................................................................................................CGTCG------------ACTCCAGGTGATGGT-------------------------------------------------------------------------------------------------------------------------------------------...............................................................................................................................................................................................................................2011.0010100
AAAGTGTGGAGAGCGATTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
...............................................................................GGAGAAGGAAGC-G---------------------------------------------------------------GAGGGCTCGTCG------------ACT......................................................................................................................................................................................................................................................................................................................................................................................2811.0010100
................................................................................................................................................................GCTCGTCG------------ACTCCAGGTGATGGT-------------------------------------------------------------------------------------------------------------------------------------------...............................................................................................................................................................................................................................2311.0010100
.......................................................................................................................................................................G------------ACTCCAGGTGATGGT-------------------------------------------------------------------------------------------------------------------------------------------GGT............................................................................................................................................................................................................................1911.0010100
..............................................................................AGGAGAAGGAAGC-G---------------------------------------------------------------GAGG.............................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100
........GAGAGCGATTCACGGCCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
.................................................................................AGAAGGAAGC-G---------------------------------------------------------------GAGGGCTCGTC......................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
..........................................CAACGGAAATC---------------GGGGAATCGAAGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
.......................................................................................................................................................................................................................................................................................................................................................ACGGA------GCCCGTG------------TT---------------------------------------------------------------------------------CGAGAACGGCATGGA......................................................................................2911.0010100
AAAGTGTGGAGAGCGATTCACGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGCCGGGGAAGCCATTGCCGAGC-A..........................................................2711.0010100
............................................................................GAAGGAGAAGGAAGC-G---------------------------------------------------------------GAGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
.................................................................................AGAAGGAAGC-G---------------------------------------------------------------GAGGGCTCGT.......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.........................................................................ATCGAAGGAGAAGGAAGC-G---------------------------------------------------------------GAGGG............................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGC-AGG--ACCAAACGGTGCCGCCAGGC..................................2811.0010100
.....................................................................GGGAATCGAAGGAGAAGGAAGC-G---------------------------------------------------------------GAGGG............................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100
.................................................................................AGAAGGAAGC-G---------------------------------------------------------------GAGGGCTC.........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCCATTGCCGAGC-AGG--AC....................................................2111.0010100
droYak3
AAAGTGTGGAGAGCGATTCACGGCCAGCTGACAATTCGAATTCAACGGAAATC---------------GGGGTCTCGGAGGAGAAGAAAAC-G---------------------------------------------------------------GAGGGCGCGCCG------------TCTGGAGGTGATGGT-------------------------------------------------------------------------------------------------------------------------------------------GGTGGCACCACGGA------GCCGGTG------------TT---------------------------------------------------------------------------------CGAGAACGGCATGGGAAACGCGGGGGCCACCAACGCCGAGG-AGG--CCCAGA------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
AAAGTGTGGAGAGCGATTCACGGCCAGCTGACAATTCGAATTCAACGGAAATC---------------GGGGTCTCGGAGGAGAAAAACCC-G---------------------------------------------------------------GAGGGCGAGACG------------ACTGCAGGTGCTGGT-------------------------------------------------------------------------------------------------------------------------------------------GGTGGCACCACGGA------GCCGGTG------------TT---------------------------------------------------------------------------------CGAGAACGGCATGGGAAACGCCGGGGCAACCAATGCCGCGG-AGG--GCCAAACGGTGCCGCCAGGCGGAGG------------CACGGGTGCA-------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGCAACCAATGCCGCGG-AGG--GC....................................................2411.0010000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGG-AGG--GCCAAACGGTG...........................................1911.0010000100
....................................................................................................................................................................................................................................................................................................................................................ACCACGGA------GCCGGTG------------TT---------------------------------------------------------------------------------CGAGA................................................................................................2211.0010000100
.....................................................................................................................................................................................................................................................................................................................................................CCACGGA------GCCGGTG------------TT---------------------------------------------------------------------------------CGAGAACGGC...........................................................................................2611.0010000100
....................................................................................AAAACCC-G---------------------------------------------------------------GAGGGCGAGAC......................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100

Generated: 05/17/2015 at 03:47 AM