dvi_5385

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ATCTCCTATGGCACCGATATGTGGAGCGTTGGTGTCATCTGCTATGTGCTGTAAGTATTTTGTGGCGGAAATATATTTTATTTAAGTCAGTTACACTGCACAACGAGTTTTTCTTAATTAAAAGGGATTTATAGAAACTTTGTACATTCTTTAAAATTTATTTAAGATAAATTTAATAAAATAGGGTTATTTGCTGCTCAAATTTGAAAAATTTAACAACATAAATAAAGACATTTAATTTTCACAATATG ************************************************...........(((((((((((.(((((((((...((((((...)))).))...((((((.((((((.((((((((((.((((((...)))))).)))))).....)))).)))))).)))))))))))))))..))).))))))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V047 embryo	SRR060667 160_females_carcasses_total	V116 male body	SRR060682 9x140_0-2h_embryos_total	SRR060688 160_ovaries_total
......................................................................................................................................................................ATAAATTTAATAAAGTACGGATAT.............................................................	24	3	1	1.00	1	1	0	0	0	0
.......................GAGCGTTGGTGTCATCTGCT................................................................................................................................................................................................................	20	0	1	1.00	1	0	0	1	0	0
...............GATATGTGGAGCGTTGGTGTCATC....................................................................................................................................................................................................................	24	0	1	1.00	1	0	1	0	0	0
...........................................................................................................GTTTTATTAACTAAAAGGGATTT.........................................................................................................................	23	3	4	0.25	1	1	0	0	0	0
...............................................................................ATATAAGACAGTTACACT..........................................................................................................................................................	18	2	7	0.14	1	0	0	0	1	0
.........................................................................................................................................................TAATTTATTGGAGATAAATTTA............................................................................	22	3	20	0.10	2	0	0	0	0	2

TAGAGGATACCGTGGCTATACACCTCGCAACCACAGTAGACGATACACGACATTCATAAAACACCGCCTTTATATAAAATAAATTCAGTCAATGTGACGTGTTGCTCAAAAAGAATTAATTTTCCCTAAATATCTTTGAAACATGTAAGAAATTTTAAATAAATTCTATTTAAATTATTTTATCCCAATAAACGACGAGTTTAAACTTTTTAAATTGTTGTATTTATTTCTGTAAATTAAAAGTGTTATAC ************************************************...........(((((((((((.(((((((((...((((((...)))).))...((((((.((((((.((((((((((.((((((...)))))).)))))).....)))).)))))).)))))))))))))))..))).))))))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060678 9x140_testes_total	SRR060686 Argx9_0-2h_embryos_total	SRR060665 9_females_carcasses_total	M047 female body	SRR060679 140x9_testes_total	V053 head
...........................................................................................................................................AACATGTAAGAAATTTTAAATAA.........................................................................................	23	0	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................TTCAAACATTTAAGAAATTTTA..............................................................................................	22	2	4	0.25	1	0	1	0	0	0	0
........ACCGTGGCTATGCCCCTCA................................................................................................................................................................................................................................	19	3	11	0.09	1	0	0	0	1	0	0
...............CTAGAAACCTCGGAACCACA........................................................................................................................................................................................................................	20	3	17	0.06	1	0	0	1	0	0	0
................TAGAAACCTCGGAACCACA........................................................................................................................................................................................................................	19	3	20	0.05	1	0	0	1	0	0	0
..............................................................................................................................................................................................................................TTTATTGCTGGAAATTAA...........	18	2	20	0.05	1	0	0	0	0	1	0
...................................................................................CTCAGTCAATGTGACGCC......................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_12875:5922689-5922939 -	dvi_5385	ATCTCCTATGGCACCGATATGTGGAGCGTTGGTGTCATCTGCTATGTGCTGTAAGTATTTTG-------TGGCGGAAATATATTTTATTTAAGTCA------------------------------------GTTA--------------------------------------------CAC------------TGCACAACGAGTTTTTCTTAATTAAAAGGGAT-------------------------------------------------------------------------------------------------------------------TTATAGAAACTT----TGTACA----------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----------------------------CTTT---AAAATTTATTTAAGATAAATTTAATAAAATAGGGTTATTTGCTGCTCAA------------ATTTGAAAAATTTAA-------------------------------------------------------------------------------------------------CAACATAAAT------------AAAGACAT----------------------------------------------------------------------------------------------------------------------------------------------TT-------------------------------------------------------------------AATTTTCACAATATG
droMoj3	scaffold_6496:24130517-24130732 +		ATCTCCTACGGCACTGATATGTGGAGCGTTGGCGTCATTTGCTATGTGCTGTAAGTATTTGG-------TGTCG-----------------AG--------------ATATTCGAATAA------AAACTTCATTA--------------------------------------------CAC------------TACACAGCA--------------------------------------------------------------GTGATTTAAATTCCAGAAAAGTCTTCAATTAATTTAAAATT-----------------------------------TTATAGAAACC---------------------------------------------------------------------------------------AATTGACAACTAAATTT-----------------------------------------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACTGAA---TTTCAGAATT-------------ATTA----------------------------------------------------------------CAT------------------------------------------------------------------------------TTTCT-------------------------------------------------------------------ATTATCAA-TAT
droGri2	scaffold_14822:594685-594845 +		GTCGGATTCTACACGGATATGTGGGCAACGGGTGTGCTCGCCTATGTCCTGTAAGTATTTTCAC---------------------AATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA--------AAATTC---AATTCAAATTAAATTGATCATTTTTTTAACCAAAATAAATAACCTTGAGCCTCTACAATTTTTTTAAAAACTA---------------------------------------------------------------------------------------------------TA----------------------------------------------------A--------------ATA-----------C-------------------------------------------------------------------------AAAAA
droWil2	scf2_1100000004514:3570279-3570384 -		ATCTCATATGGCACAGATATGTGGAGTGTTGGTGTTATATGCTATGTGCTGTAAGTTTTATCAA----------------------------------------------------------------------------TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTT---TATTACAAAA-------------GA-A--------------------------------------AACTTATTGAAAGTAGGTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA
dp5	3:14239629-14239840 -		ATCTCCTACGGAACGGACATGTGGAGCGTCGGGGTCATTTGCTATGTGCTGTAAGTTGAAAAAGATATA---------TAGACTCATGTTAAGGCAA--------------------------------------------------------------------------------------------------------------------------------TGTTAGAAGTAGAAGGAATCAGATCTCTA---TTGCATGTAGATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAAACT--AAGTCA---TGTTTCTCTTCGTCAA------------------------------------------CATTTTCACGCTCAATT---ATTTAAAAAT-------------GTAA--------------------------------------A--------------------CCTTACAC------------------------------------------------------------------------------TTCCTC------------------------------------------C--------GA----------------------TTC
droPer2	scaffold_4:1076121-1076329 +		ATCTCCTACGGAACGGACATGTGGAGCGTCGGGGTCATTTGCTATGTGCTGTAAGTTGAAAAAGATA-----------TAGACACATGTTAAGGCAA--------------------------------------------------------------------------------------------------------------------------------TGTTAGAAGTAGAAGGAATCGGATCTCTA---TTGCATGTAGATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAAACT--AAGTCA---TGTTCCTCTTCGTCAA------------------------------------------CATTTTCACGCTCAATT---ATTTAAAAAT-------------GTAA--------------------------------------A--------------------TCTTACAC------------------------------------------------------------------------------TTCCTC-------------------------------------------------------------------------CGATG
droAna3	scaffold_13266:12889632-12889687 -		ATCTCTTATGGCACGGATATGTGGAGTGTCGGAGTTATTTGTTATGTGCTGTAAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396730:1032079-1032138 +		ATCTCTTATGGCACGGATATGTGGAGTGTCGGAGTTATTTGTTATGTGCTGTAAGTGTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302476:1025004-1025221 -		ATATCGTATGGAACCGATATGTGGAGTGTAGGTGTAATATGTTATGTGCTGTAAGTTTCCCTAA---------------------ATGTTAAGGG----------------------------------------------------------------------------------------------------------------------------------TTTTTGAAATATTAAGAAAATATTTTCTAAGCTTAACTCTAGAATGTT---ATCAAGAAAAGACCTAATTCTTTTAAATTTTGAATTGAAAAATCTAATATAAAAATCCACAAATATACACCCAAACTCTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------ACCCTTAATAATACC
droFic1	scf7180000453858:1111870-1112047 +		ATATCCTATGGAACCGATATGTGGAGTGTTGGTGTGATATGCTATGTGCTGTAAGTTTTGAAAACATT--------------------------------------------CTAATAT------AATAT---------------------------------------------CCATACACGTCCTAG------------CA--------------------------------------ATTAAATC---A---TAGCT------------------------------------------------------------------------------------------------TGTACA----------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGACA---C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTCATTA---AATTAAAAC---------------A-A--------------------------------------AAATTCTTCCAAAGATGTTAATTTTA-------------------------------------------------------------------------------------CC---------------------------------------------------GC----------------------ACC
droEle1	scf7180000491107:1491014-1491385 +		ATATCCTATGGAACAGATATGTGGAGTGTCGGTGTTATATGCTATGTGCTGTAAGTTAAGCAAA--------------TATATACAATTTAAGATAATTACATAAGGCTTGTA-------------------GTTAAATTTTTGTT----------------------------------------TTAAGAACTAGCT--------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCACGTATTTGGTTATTGGTCCTACAGCAT-TTCAAATAGTTTTTTAAGTTTAAAATTTAATCTGGTACTTTATAATTTACAATTATAAAT-----TTGTTTGATGTATTTAGACTTTCAAAATTTTTAAATATCTTATACAAGTATTGGTACTTATTGCGTACATCTGGCAGAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCATATTAAAATAACATAAATCAAATTACAAATTTAGACACTTAAGTCCTTATCAAGAGCTTAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATTTTG
droRho1	scf7180000777217:508530-508751 -		ATATCCTATGGAACAGATATGTGGAGTGTCGGTGTTATATGCTATGTGCTGTAAGTTTTACAAATATTTTAGAATAACTATTATTACTTTGAG--------------CTAAAC-------------------GTTT--------------------------------------------AAA------------AGCTGAACAAGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGATCCTACAGCATCTTGAAATAGTTTTTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTCTCTA---TATTATATTT-------------CTTA--------------------------------------CAATGTTTAATACAAATG-----------TA----------------------------------------------------A--------------ATAAAATATATTATTCAC-------------------------------------------------------------------TTATTATA
droBia1	scf7180000301506:1100109-1100164 +		ATATCCTATGGCACAGATATGTGGAGTGTCGGTGTTATATGCTATGTGCTGTAAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000415870:685467-685666 +		ATATCCTATGGAACAGATATGTGGAGTGTCGGTGTAATTTGCTATGTGCTGTAAGTTCAAT----------------------------------------------------------------------------AT--------------------------------------------------GAAAA-------------------------------TGTAAAGAG-------------------------------------------------------ACAATTTCTTTAAAAATTAGATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA--------AAGTTA---TATTCCAATTAATTCATTCATTT-------------------------------------------AATTCATTT---TGTTAAAATT-------------GTAA--------------------------------------AAATATCTGCAAGGATGG-----------TGGTAAAATCA------------------------------------------------------------------TTTTAAC---------------------------------------------------CA-----------------ACTCAATA
droEug1	scf7180000409209:552265-552445 +		ATATCCTATGGAACTGATATGTGGAGTGTCGGTGTTATATGCTACGTGCTGTAAGTTTTATTAAATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATCGAAACACCTTTAAAAATAAGTTG---------------------------AGAAT----------------------------------------------CA--------------------------------------------------------------------------AATA---ATTTAAAAAT------------------------ATCCTTATCATGAATTCAACACATTATAACCCAATACCCTCAAAGATGTTGATTTTA-------------------------------------------------------------------------------------AC---------------------------------------------------CA----------------------AGG
dm3	chr2R:5607853-5608216 -		ATATCGTATGGAACAGATATGTGGAGTGTTGGCGTTATATGCTATGTGCTGTAAGTTTTAT----------------------------------------------------------------------------ACATTTAATGTACAACATGTATTACAAAGCAAAAAAGTTTATACAAGCCTTTG------------AT-GT----------CTAA----TGTTAG------------------------------------------------------------------------------------------------------------------------------ATGTACGCATT----------------------------------------------------------------------------------------------------------------------------------------------------------------GGG---TTTTATTAAGTTATATTTAAATTTCTTGAACA---------------------------GAGAATACTGAAGATCAA------------AACTGAAAAAATAATTTGAAAAGGAAAGCACAATTTTTTTACT-----------------------------------------------------------------------------------------------------------------------------------------------------TTT-----------AGATCAATTCTTTAAATAAATCCACTAATATTCTCTTAATAAACTTACAAGTCAAATAGATGTTTATAAA-------------TCCTA-TTAACATCTATAGAAATCATAAAGTGTATTCTTGATCTTACTTACCAA----------------------AGT
droSim2	2r:6393390-6393660 -		ATATCCTATGGAACAGACATGTGGAGTGTTGGCGTTATATGCTATGTGCTGTAAGTTTAAT----------------------------------------------------------------------------ACATTTAATCTACAATATGTATTACAAAGCAAAATATTTTAAACAAGCCT-----------------------------------------TAG------------------------------------------------------------------------------------------------------------------------------ATGTACGCAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------GGG---ATTTATTAAGTTTCATTAAAATTTC--------------------------------------------------A------------AAACTGATAAAATAATTTGAACAGAAAAACACA-ATTTCTTACT-----------------------------------------------------------------------------------------------------------------------------------------------------TGC-----------AAATCAATTCTTTAAATATATCTACTAACATTCTCTTAAAA-ACGT-CATGTCAAATAGATTTTTATAAG-----------------------------------------------------------------------------------------TCA
droSec2	scaffold_30:506198-506358 +		GTCGGCTTTTACACAGATATGTGGGCTACTGGAGTACTATCATATGTTCTGTAAGTTTTCATGTTTTT--------------------------------------------TTTTTTTTAATTTACTAT-------AT--------------------------------------------------AAA-------------------------------------------------------------------------------------------------------------------------------------------------AATATACATGCAAGGTTTCTATGTCCTGTGG----------------------------------------------------------------------------------------------------------------------------------------------------------------GCG---ATTT---------------TATTTT-------------------AAAATTGGTAAAATATATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTGC
droYak3	2L:18241195-18241535 -		ATATCGTATGGAACAGACATGTGGAGTGTCGGCGTTATATGCTATGTGCTGTAAGTTTAAT----------------------------------------------------------------------------ACCTGTGCT----------------------------------------TTAGAAGCTA---------------------------------------------------CTTTAT--------------------------------------------------------------------------------------------------------ATGTACGCTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------GGC---TTTTATTAAGTTATTTTAAAGTTTCTTAAACAATGACTAG---------------------------AGAATAGCAA-ATGAGTACTCAAACTGCCAAAATAATATGAAGA--------CC-TTTTTTTACA-----------------------------------------------------------------------------------------------------------------------------------------------------TGG-----------CGATGAAGTCTTTAAATAAATCTTTTAATATTTTCTTTAAACGTTTAT-----AA--------------ATCAAATCTATTTATCCTATTTTATATCGATTGAAATCAAACCGTGGATACTTCCTCTTACTTAGCCAACAAGTATTTATTTTTACAAAAACT
droEre2	scaffold_4929:8747875-8748196 +		ATATCCTATGGAACAGACATGTGGAGTGTCGGCGTTATATGCTATGTGCTGTAAGTTTAAT----------------------------------------------------------------------------ACACTTCACTT-----ATGTATTGCAACA-AAAATATTTTATACATGCCTAAGAAGA-------------------------------TGTACAAAGAATAAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATACCAAAATGAGTACTCCAACTGCCAAAATAATGTAGACAT--AAGCCC---TTTTTTACA-----------------------------------------------------------------------------------------------------------------------------------------------------TGG-----------CGGTAAAATCTTCAAATAAATCCACTAATATTCTCTTAAAACGTTTCT-----AAATCTCTTTTCAAAAT-------------TCCTT-TTAATACCGCTGGAAATCATAAAGTGGATACCTAAT-TTACTTAGCCAACGAATATT---------TTTTTTG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

ATCTCCTATGGCACCGATATGTGGAGCGTTGGTGTCATCTGCTATGTGCTGTAAGTATTTTG-------TGGCGGAAATATATTTTATTTAAGTCA------------------------------------GTTA--------------------------------------------CAC------------TGCACAACGAGTTTTTCTTAATTAAAAGGGAT-------------------------------------------------------------------------------------------------------------------TTATAGAAACTT----TGTACA----------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----------------------------CTTT---AAAATTTATTTAAGATAAATTTAATAAAATAGGGTTATTTGCTGCTCAA------------ATTTGAAAAATTTAA-------------------------------------------------------------------------------------------------CAACATAAAT------------AAAGACAT----------------------------------------------------------------------------------------------------------------------------------------------TT-------------------------------------------------------------------AATTTTCACAATATG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.......................GAGCGTTGGTGTCATCTGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............GATATGTGGAGCGTTGGTGTCATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ATCTCCTACGGCACTGATATGTGGAGCGTTGGCGTCATTTGCTATGTGCTGTAAGTATTTGG-------TGTCG-----------------AG--------------ATATTCGAATAA------AAACTTCATTA--------------------------------------------CAC------------TACACAGCA--------------------------------------------------------------GTGATTTAAATTCCAGAAAAGTCTTCAATTAATTTAAAATT-----------------------------------TTATAGAAACC---------------------------------------------------------------------------------------AATTGACAACTAAATTT-----------------------------------------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAACTGAA---TTTCAGAATT-------------ATTA----------------------------------------------------------------CAT------------------------------------------------------------------------------TTTCT-------------------------------------------------------------------ATTATCAA-TAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................GTTGGCGTCATTTGCTATGTGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	2
...TCCTACGGCACTGATATGTGGAGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0
.....................................................................................................................AA------AAACTTCATTA--------------------------------------------CAC------------TACACAGCA--------------------------------------------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
............ACTGATATGTGGAGCGTTGGCGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0

droGri2

GTCGGATTCTACACGGATATGTGGGCAACGGGTGTGCTCGCCTATGTCCTGTAAGTATTTTCAC---------------------AATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA--------AAATTC---AATTCAAATTAAATTGATCATTTTTTTAACCAAAATAAATAACCTTGAGCCTCTACAATTTTTTTAAAAACTA---------------------------------------------------------------------------------------------------TA----------------------------------------------------A--------------ATA-----------C-------------------------------------------------------------------------AAAAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..........ACACGGATATGTGGGCAACGGGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0

droWil2

ATCTCATATGGCACAGATATGTGGAGTGTTGGTGTTATATGCTATGTGCTGTAAGTTTTATCAA----------------------------------------------------------------------------TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTT---TATTACAAAA-------------GA-A--------------------------------------AACTTATTGAAAGTAGGTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............GATATGTGGAGTGTTGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	1	2	0	0
...............GATATGTGGAGTGTTGGTGTTAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
..............AGATATGTGGAGTGTTGGTGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1
....................GTGGAGTGTTGGTGTTATATGCTATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
...............GATATGTGGAGTGTTGGTGTTATATGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0

dp5

ATCTCCTACGGAACGGACATGTGGAGCGTCGGGGTCATTTGCTATGTGCTGTAAGTTGAAAAAGATATA---------TAGACTCATGTTAAGGCAA--------------------------------------------------------------------------------------------------------------------------------TGTTAGAAGTAGAAGGAATCAGATCTCTA---TTGCATGTAGATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAAACT--AAGTCA---TGTTTCTCTTCGTCAA------------------------------------------CATTTTCACGCTCAATT---ATTTAAAAAT-------------GTAA--------------------------------------A--------------------CCTTACAC------------------------------------------------------------------------------TTCCTC------------------------------------------C--------GA----------------------TTC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........GAACGGACATGTGGAGCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........GGAACGGACATGTGGAGCGTCGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1
...........AACGGACATGTGGAGCGTCGGGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....CTACGGAACGGACATGTGGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....CCTACGGAACGGACATGTGGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............GGACATGTGGAGCGTCGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..CTCCTACGGAACGGACATGTGGAGCGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................TAGATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAAACT--AATC...................................................................................................................................................................................................................................................................................................................................................	18	16	0.06	1	1	0	0	0	0	0	0	0	0	0

droPer2

ATCTCCTACGGAACGGACATGTGGAGCGTCGGGGTCATTTGCTATGTGCTGTAAGTTGAAAAAGATA-----------TAGACACATGTTAAGGCAA--------------------------------------------------------------------------------------------------------------------------------TGTTAGAAGTAGAAGGAATCGGATCTCTA---TTGCATGTAGATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAAACT--AAGTCA---TGTTCCTCTTCGTCAA------------------------------------------CATTTTCACGCTCAATT---ATTTAAAAAT-------------GTAA--------------------------------------A--------------------TCTTACAC------------------------------------------------------------------------------TTCCTC-------------------------------------------------------------------------CGATG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCTTCGTCAA------------------------------------------CAT.................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0
.........GGAACGGACATGTGGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
...........................GTCGGGGTCATTTGCTATGTGCTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.........GGAACGGACATGTGGAGCGTCGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1

droAna3

ATCTCTTATGGCACGGATATGTGGAGTGTCGGAGTTATTTGTTATGTGCTGTAAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....CTTATGGCACGGATATGTGGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.............CGGATATGTGGAGTGTCGGAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
....CTTATGGCACGGATATGTGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0
..CTCTTATGGCACGGATATGTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0

droBip1

ATCTCTTATGGCACGGATATGTGGAGTGTCGGAGTTATTTGTTATGTGCTGTAAGTGTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATATCGTATGGAACCGATATGTGGAGTGTAGGTGTAATATGTTATGTGCTGTAAGTTTCCCTAA---------------------ATGTTAAGGG----------------------------------------------------------------------------------------------------------------------------------TTTTTGAAATATTAAGAAAATATTTTCTAAGCTTAACTCTAGAATGTT---ATCAAGAAAAGACCTAATTCTTTTAAATTTTGAATTGAAAAATCTAATATAAAAATCCACAAATATACACCCAAACTCTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------ACCCTTAATAATACC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATATCCTATGGAACCGATATGTGGAGTGTTGGTGTGATATGCTATGTGCTGTAAGTTTTGAAAACATT--------------------------------------------CTAATAT------AATAT---------------------------------------------CCATACACGTCCTAG------------CA--------------------------------------ATTAAATC---A---TAGCT------------------------------------------------------------------------------------------------TGTACA----------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGACA---C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTCATTA---AATTAAAAC---------------A-A--------------------------------------AAATTCTTCCAAAGATGTTAATTTTA-------------------------------------------------------------------------------------CC---------------------------------------------------GC----------------------ACC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATATCCTATGGAACAGATATGTGGAGTGTCGGTGTTATATGCTATGTGCTGTAAGTTAAGCAAA--------------TATATACAATTTAAGATAATTACATAAGGCTTGTA-------------------GTTAAATTTTTGTT----------------------------------------TTAAGAACTAGCT--------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCACGTATTTGGTTATTGGTCCTACAGCAT-TTCAAATAGTTTTTTAAGTTTAAAATTTAATCTGGTACTTTATAATTTACAATTATAAAT-----TTGTTTGATGTATTTAGACTTTCAAAATTTTTAAATATCTTATACAAGTATTGGTACTTATTGCGTACATCTGGCAGAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCATATTAAAATAACATAAATCAAATTACAAATTTAGACACTTAAGTCCTTATCAAGAGCTTAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATTTTG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATATCCTATGGAACAGATATGTGGAGTGTCGGTGTTATATGCTATGTGCTGTAAGTTTTACAAATATTTTAGAATAACTATTATTACTTTGAG--------------CTAAAC-------------------GTTT--------------------------------------------AAA------------AGCTGAACAAGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGATCCTACAGCATCTTGAAATAGTTTTTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTCTCTA---TATTATATTT-------------CTTA--------------------------------------CAATGTTTAATACAAATG-----------TA----------------------------------------------------A--------------ATAAAATATATTATTCAC-------------------------------------------------------------------TTATTATA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATATCCTATGGCACAGATATGTGGAGTGTCGGTGTTATATGCTATGTGCTGTAAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATATCCTATGGAACAGATATGTGGAGTGTCGGTGTAATTTGCTATGTGCTGTAAGTTCAAT----------------------------------------------------------------------------AT--------------------------------------------------GAAAA-------------------------------TGTAAAGAG-------------------------------------------------------ACAATTTCTTTAAAAATTAGATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA--------AAGTTA---TATTCCAATTAATTCATTCATTT-------------------------------------------AATTCATTT---TGTTAAAATT-------------GTAA--------------------------------------AAATATCTGCAAGGATGG-----------TGGTAAAATCA------------------------------------------------------------------TTTTAAC---------------------------------------------------CA-----------------ACTCAATA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ATATCCTATGGAACTGATATGTGGAGTGTCGGTGTTATATGCTACGTGCTGTAAGTTTTATTAAATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATCGAAACACCTTTAAAAATAAGTTG---------------------------AGAAT----------------------------------------------CA--------------------------------------------------------------------------AATA---ATTTAAAAAT------------------------ATCCTTATCATGAATTCAACACATTATAACCCAATACCCTCAAAGATGTTGATTTTA-------------------------------------------------------------------------------------AC---------------------------------------------------CA----------------------AGG	Size	Hit Count	Total Norm	Total
No Reads

dm3

ATATCGTATGGAACAGATATGTGGAGTGTTGGCGTTATATGCTATGTGCTGTAAGTTTTAT----------------------------------------------------------------------------ACATTTAATGTACAACATGTATTACAAAGCAAAAAAGTTTATACAAGCCTTTG------------AT-GT----------CTAA----TGTTAG------------------------------------------------------------------------------------------------------------------------------ATGTACGCATT----------------------------------------------------------------------------------------------------------------------------------------------------------------GGG---TTTTATTAAGTTATATTTAAATTTCTTGAACA---------------------------GAGAATACTGAAGATCAA------------AACTGAAAAAATAATTTGAAAAGGAAAGCACAATTTTTTTACT-----------------------------------------------------------------------------------------------------------------------------------------------------TTT-----------AGATCAATTCTTTAAATAAATCCACTAATATTCTCTTAATAAACTTACAAGTCAAATAGATGTTTATAAA-------------TCCTA-TTAACATCTATAGAAATCATAAAGTGTATTCTTGATCTTACTTACCAA----------------------AGT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
....CGTATGGAACAGATATGTGGAGTGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0
...............GATATGTGGAGTGTTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0
...........AACAGATATGTGGAGTGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............GATATGTGGAGTGTTGGCGTTATATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GGAACAGATATGTGGAGTGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
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..........GAACAGATATGTGGAGTGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........AACAGATATGTGGAGTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GAACAGATATGTGGAGTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CAGATATGTGGAGTGTTGGCGTTATAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..ATCGTATGGAACAGATATGTGGAGTGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATACTGAAGATCAA------------AACTGAA.........................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ATATCCTATGGAACAGACATGTGGAGTGTTGGCGTTATATGCTATGTGCTGTAAGTTTAAT----------------------------------------------------------------------------ACATTTAATCTACAATATGTATTACAAAGCAAAATATTTTAAACAAGCCT-----------------------------------------TAG------------------------------------------------------------------------------------------------------------------------------ATGTACGCAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------GGG---ATTTATTAAGTTTCATTAAAATTTC--------------------------------------------------A------------AAACTGATAAAATAATTTGAACAGAAAAACACA-ATTTCTTACT-----------------------------------------------------------------------------------------------------------------------------------------------------TGC-----------AAATCAATTCTTTAAATATATCTACTAACATTCTCTTAAAA-ACGT-CATGTCAAATAGATTTTTATAAG-----------------------------------------------------------------------------------------TCA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....CTATGGAACAGACATGTGGAGTGTTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GTCGGCTTTTACACAGATATGTGGGCTACTGGAGTACTATCATATGTTCTGTAAGTTTTCATGTTTTT--------------------------------------------TTTTTTTTAATTTACTAT-------AT--------------------------------------------------AAA-------------------------------------------------------------------------------------------------------------------------------------------------AATATACATGCAAGGTTTCTATGTCCTGTGG----------------------------------------------------------------------------------------------------------------------------------------------------------------GCG---ATTT---------------TATTTT-------------------AAAATTGGTAAAATATATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...............GATATGTGGGCTACTGGAGTAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TCTATGTCCTGTGG----------------------------------------------------------------------------------------------------------------------------------------------------------------GCG---ATTT---------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
.............CAGATATGTGGGCTACTGGAGTACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0
...................TGTGGGCTACTGGAGTACTATCATAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0

droYak3

ATATCGTATGGAACAGACATGTGGAGTGTCGGCGTTATATGCTATGTGCTGTAAGTTTAAT----------------------------------------------------------------------------ACCTGTGCT----------------------------------------TTAGAAGCTA---------------------------------------------------CTTTAT--------------------------------------------------------------------------------------------------------ATGTACGCTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------GGC---TTTTATTAAGTTATTTTAAAGTTTCTTAAACAATGACTAG---------------------------AGAATAGCAA-ATGAGTACTCAAACTGCCAAAATAATATGAAGA--------CC-TTTTTTTACA-----------------------------------------------------------------------------------------------------------------------------------------------------TGG-----------CGATGAAGTCTTTAAATAAATCTTTTAATATTTTCTTTAAACGTTTAT-----AA--------------ATCAAATCTATTTATCCTATTTTATATCGATTGAAATCAAACCGTGGATACTTCCTCTTACTTAGCCAACAAGTATTTATTTTTACAAAAACT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............GACATGTGGAGTGTCGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
....CGTATGGAACAGACATGTGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGAAGA--------CC-TTTTTTTACA-----------------------------------------------------------------------------------------------------------------------------------------------------T...............................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....GTATGGAACAGACATGTGGAGTGTCGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....CGTATGGAACAGACATGTGGAGTGTCGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............ACAGACATGTGGAGTGTCGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........TGGAACAGACATGTGGAGTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......ATGGAACAGACATGTGGAGTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..ATCGTATGGAACAGACATGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
..............AGACATGTGGAGTGTCGGCGTTATATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....GTATGGAACAGACATGTGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTTCTTTAAACGTTT....................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................CGGCGTTATATGCTATGTGCTGTAAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......TATGGAACAGACATGTGGAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................ATGTGGAGTGTCGGCGTTATATGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....CGTATGGAACAGACATGTGGAGTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

ATATCCTATGGAACAGACATGTGGAGTGTCGGCGTTATATGCTATGTGCTGTAAGTTTAAT----------------------------------------------------------------------------ACACTTCACTT-----ATGTATTGCAACA-AAAATATTTTATACATGCCTAAGAAGA-------------------------------TGTACAAAGAATAAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATACCAAAATGAGTACTCCAACTGCCAAAATAATGTAGACAT--AAGCCC---TTTTTTACA-----------------------------------------------------------------------------------------------------------------------------------------------------TGG-----------CGGTAAAATCTTCAAATAAATCCACTAATATTCTCTTAAAACGTTTCT-----AAATCTCTTTTCAAAAT-------------TCCTT-TTAATACCGCTGGAAATCATAAAGTGGATACCTAAT-TTACTTAGCCAACGAATATT---------TTTTTTG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......TATGGAACAGACATGTGGAGTGTCGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
...........................GTCGGCGTTATATGCTATGTGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAATGAGTACTCCAACTGCC.........................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
..........GAACAGACATGTGGAGTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
..................ATGTGGAGTGTCGGCGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
.......ATGGAACAGACATGTGGAGTGTCGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
ATATCCTATGGAACAGACATGTGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
ATATCCTATGGAACAGACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
...........AACAGACATGTGGAGTGTCGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
......TATGGAACAGACATGTGGAGTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0

dvi_5385

scaffold_12875:5922739-5922889 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads