ID:

dvi_5356

 Coordinate:

scaffold_12875:5716856-5717006 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\GJ20855-cds]; exon [dvir_GLEANR_6266:4]; intron [Dvir\GJ20855-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey-

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTATGCATACACGTAAAGACCCACAACGCGTTACGTTAATGGATTGCAACGTTATTTCCACTACTACTACAAACCGTTTACTACCCATAGTAACACAGCTTAAGTGCCCGAAAGACATTCGCCATATGAGTATTGTTGTAATCTGTTTTAAATTTTCTTCGCATCGATTCCATACGGCGACACCAACAACAACAACAACAGCGACACTCTTGCAGCAGCAGCAGCAGCAACAACAACTTCGCCACGTCGTG
***************************************************************************************************...................(((((.((((...((((.(((.....................))).))))..)))).)))))*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060672
9x160_females_carcasses_total
 V116
male body		 SRR060676
9xArg_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060674
9x140_ovaries_total
 M061
embryo
 SRR060656
9x160_ovaries_total
 SRR060668
160x9_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060681
Argx9_testes_total
 SRR060689
160x9_testes_total
 SRR060678
9x140_testes_total
...................................................................................................TTAAGTGCCCGAAAGACA...................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
TTGTGCATACACGTAAAGACC...................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................CGCATCGATTCCATACGGCGA....................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................GTAACACAGCTTAAGTGCCCG............................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................................ACAACAACTTCGCCACGTCGT. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................AACACAGCTTCAGTGCCCGAAAGAC....................................................................................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................ACAACAGCAGCGTCACTCTCGCA..................................... 23 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GGCAGCAACAACAACTTCGCC........ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TCTGTTTTAAATTTTCTTCGC......................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................ATTCGCCATATGAGTATTGTT.................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................ATAGCAGCGACACTCTTGCA..................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AAGTGCCCGAAAGACATTCG.................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................CAACAACAACAGCGACACTCT......................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................ACAACGGCTTCGCCACGTCGT. 21 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................GAGTATTGTTGTAATCTGTT........................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TTTTCTTCGCATCGATTCCAT.............................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................ACTACTACTACAAACCGTT............................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................GTTAATGGATTGCAACGTTAT.................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TTCGCCATGTGAGTATTGTTG................................................................................................................. 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............GTAAAGACCCACAACGCGTTA.......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...............AAGACCCACAACGCGTTGCGT....................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CGACACCAACAACAACAACAACAGC................................................. 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................CAACAACAACAACAGCGACAC............................................ 21 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CAGCAGCAGCAACAACAACTT............ 21 0 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................ACAATCTTGCAGCAGGAACAG........................... 21 3 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GCAGCAGCAGCAGCAACAACAAC.............. 23 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CAGCAGCAGCAGCAGCAACA................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

AATACGTATGTGCATTTCTGGGTGTTGCGCAATGCAATTACCTAACGTTGCAATAAAGGTGATGATGATGTTTGGCAAATGATGGGTATCATTGTGTCGAATTCACGGGCTTTCTGTAAGCGGTATACTCATAACAACATTAGACAAAATTTAAAAGAAGCGTAGCTAAGGTATGCCGCTGTGGTTGTTGTTGTTGTTGTCGCTGTGAGAACGTCGTCGTCGTCGTCGTTGTTGTTGAAGCGGTGCAGCAC
***********************************************************************...................(((((.((((...((((.(((.....................))).))))..)))).)))))*************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 SRR060659
Argentina_testes_total
 SRR060677
Argx9_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060658
140_ovaries_total
 SRR060673
9_ovaries_total
 M047
female body
 SRR060660
Argentina_ovaries_total
 SRR060689
160x9_testes_total
 M027
male body		 M028
head
 SRR060654
160x9_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR060683
160_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 M061
embryo
 V047
embryo
 V053
head
 SRR060668
160x9_males_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
.............................................CGTTGCAATAAAGGTGATGAT......................................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................GTAGCTGAGGTATGCCGCTGT..................................................................... 21 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................GATGGGTATCATTGTGTCGAAT..................................................................................................................................................... 22 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................GGCAAATGATGGGTATCGTTG............................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................TGATGATGATGTTTGGCAAAT........................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................TTGCGCAATGCAATTACCTAAC............................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................GTGTTGCGCAATGCAATTACC................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TGTGTCGAGTTCACGGGCTTT.......................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................GCAATGCAATTACCTAACGTT.......................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................GCAATGCGGTTACCTAACGTT.......................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................GGTATGCCGCTGTGGTTGTT.............................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGTTTGGCAGATGGTGGGTAT.................................................................................................................................................................. 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................GCGTAGCTGAGGTATGCCGCT....................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................GATGGGTATCATTGTGTCGAA...................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TTGTTGTCGCTGTGAGAACGT..................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TATGATGGGTATCATTGTGT.......................................................................................................................................................... 20 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGGTTGGCAAATGATGGGTAT.................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................TGTGTCGAATTCACGGGCTTT.......................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................GGGTATCATTGTGTCGAGTTC................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................GCAATGAAATTACCTAACGTT.......................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................AGCTAAGGTATGCCGCTGTGGTT................................................................. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................GGGTGTTGCGCAATGCAATTA................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......ATGTGCATTTCTGGGTGTTGC............................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................AAGGTATGCCGCTGTGGTTGT............................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................GTCGAGTTCACGGGCTTTCTG....................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................TTTGGCAAATGATGGGTATCA................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................TGATGATGGTGGTTGGCAAGT........................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CGTGGTTGTCGAAGCCGTGCA.... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................CGTTGTTGTCGAAGCCGTGCAC... 22 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................GACAAACGATGGGTATCA................................................................................................................................................................ 18 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................TATGCCGCTGTGTTGGTTTTT........................................................... 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................................GCGTTGTTGTTGCAGCGGT....... 19 2 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................AATTCACGGGCTTTTTGTT..................................................................................................................................... 19 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................AAGGTATGCCATGGTGGT.................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................TAAGGTATGCCATGGTGG................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................TCGTTGTGGTGGAAGCAGTG...... 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:5716806-5717056 - dvi_5356 TTAT----------GCATAC---------------------------------------------------------------------ACGTAAA----------------------------G-ACCCACAA-----CGCGTTACGTTAA-------TGGATTGC--AAC--GTTATTT-CCACTACTACTACAAACCGTTTACTACCC------ATAGTAACACAGCTTAAGTGCCCGA----AAGA----------CA-------TTCG---------------------------CC-AT-----ATGAGTATTGTTGTAATCTGTTTT--AAATTTTCTTCGCATCGATTCCATACGGCGAC-------ACCAA-----------CAACA-ACAA--CA---ACAGCGACACTCTTGCAGCAGCAGCAGCAGCAACA------------ACAACTTCGCCACGTCGTG-----
droMoj3 scaffold_6496:24349785-24350022 + C-----------TTGCATTC---------------------------------------------------------------------ACGTTACT-----------------------TAAAGTACCCACAA-----CGCGTTA--CGTAA------TGGATTGC--TAC--GTTATAAACTACTACTACTACAAA--------TACCCC--------GTAACACAGTTTTAGTGCCCGA----ACGA----------CA-------TACG---------------------------CCAAA-----ATGTGTTTTGTTGTAATCTCTTTT--AAATTTTCTTCGAATTGATTCCATACTACGAT-------GATAA-----------CAACG-ACGAC----------CAACAGCGCCGAAACAGCAGCA---------------------ACAACTTCGCCACGTCGCGACGCT
droGri2 scaffold_15112:654538-654808 - T-----------GC-----------------------------------------------------------------------------GTAAA------------------------TGAAG-ACCCAAA---ACACGCGTTACGTTAAC-------GGATTGCGCTAC--GCTATGAAAAACTGCTACTG-------------ACCCCAAAAAACAATAACAC---TTATGTGCTTAAGAGTTCCTAAAAAAAGACATAACA-TACGTTCCACCACCACTCCAAACCCCCTCTCCTCCAAA-----ATGTGTTTTGTTGTAATCTCTTTT--ACATTTTCTTCGAATCGATTCCATACGACGAC-------GACAA-----------CGAC---------------AACAGCGACACTGCAGCAGCAGCAACA---------------------ACGTCGCCCCGCCGCG-----
droWil2 scf2_1100000004558:1454950-1455152 + T-----------ATGTATA-------------------------------------------------------------------------TATA------------------------------------A------AGTACTAACTTTT-------TAGATTCA--TAATCATTAATT-CCATAACTCC--------A--TTCTTCT-----------CAACATGGCAAAAAAAAAAAA----AAG----------TAAACCC----------------------------------CC-ATTCAAATC--ATTTTGTTGTAATCAAATTTC-G-----------------------ACTTCGAC-------TG--------------------------------TAATCGCAGCAACGCAGCAGCAGCAGCAGCAACAACAACGACAACAACAACATCGCCACGTCGAA-----
dp5 3:17886562-17886802 - CTTT----------GCCCA-CCCCAATCCACGATTCCTTTGGAATACTACTTCTTTATCGGGTACTCTACTCCACTCATTCATCGC----------CTACCCTAACCACTCTAGCGCGTT------------AA-----CGCGTTATACGCAA------CGGACTGC--C-------------------------------TCGA------------------------------------ATAGTTGCCAACCAAACACACCAAA-GACTCG---------------------------CC-AA-----AC--GTA---TTGTAATATTTTCC--AACTTTTCTTCGAATCGATTCCATACTACGAC-------GACAG--------------------------------CCGCAATGCTACAGCAGCAG---CA------------------------------------------
droPer2 scaffold_73:163732-163972 + CTTT----------GCCCA-CCCCAATCCACGATTCCTTTGGAATACTACTTCTTTATCGGGTACTCTACTCCACTCATTCATCGC----------CTACCCTAACCACTCTAGCGCGTT------------AA-----CGCGTTATACGCAA------CGGACTGC--C-------------------------------TCGA------------------------------------ATAGTTGCCAACCAAACACACCAAA-GACTCG---------------------------CC-AA-----AC--GTA---TTGTAATATTTTCC--AACTTTTCTTCGAATCGATTCCATACTACGAC-------GACAG--------------------------------CCGCAATGCTACAGCAGCAG---CA------------------------------------------
droAna3 scaffold_13266:11901036-11901207 + G-----------T--------------------------------------------------------------------------------ACA------------------------------------GA--ACCAGAGCCAACTGAAA------AGGTTTCG--CTA------------------------------------CTC------A------------------------------------GAGCTTAGC-TC-GACTT----------------------------TC-GA-----AAACG---TATTGTAATCTTTTTG--AACTTTTCTCCGACTCGTTTTCATAA------CTTCGACTACGAC--------TCCGACATCCGCGACA---AAAGCAGCTCCGTCGCAGCAGCAACACCAGCAGCA------------AC----------------------
droBip1 scf7180000396547:578324-578429 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTGTAATCTTTTTGTAAACTTTTATTCGACTCGTTTTCATAA------CTTCGACTACA------------CGACCAACGCGCCA---AAAGCAGCACCGTCGCAGCAGCAACACCAGCAGCA------------AC----------------------
droKik1 scf7180000302682:2034379-2034493 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGTTGTAATCTTTTTCCAAACTTTTCTTCGACTCGATTCCATACTGCGAC---C---AACTA-----------TGACT-ACGA-------AAAGCAGCAGCATGGCAGCACCAGCAGCAACAGCA------------ACATCTTCGCCAG-----------
droFic1 scf7180000453948:1075889-1076034 - G-----------------------------------------------------------------------------------------CGTCCG------------------------------------AAAGACCCGCGTTGAATAAAC------TGGATTGC--CAA--G---------------------------------C---------------------------------------------TAGCATAACCCC-GACCC----------------------------CC-AA-----AA--GTACTGTTGTAATCTTTTCC--AACTTTTCTTCGACTCGATTCCATACTACGA---------------------------CA-TCGAT--C---CCAGTGGCCATAGTGCAACACAA------------------------------------------------
droEle1 scf7180000491107:825235-825408 - C-----------TC------------------------------------------------------------------------ACTA-----------------------------------------------CCCGCGTTGAATGAACTACTATTGGATTGC--CAACTGCCA---ACTACCA---------ACTATCAA---C---------------------------------TAGCAAC----------TAGCCCC-GCACC----------------------------CC-AA-----AA--GTATTGTTGTAATCTTTTCC-AAACTTTTCTTCGACTCGATTCCATACTGCGAC-------AACTACTACGCTACTACGACA-TCGATA-A---TCAGTG-----------------------------------------------------------------
droRho1 scf7180000779911:275166-275345 + G-----------------------------------------------------------------------------------------CGTACT------------------------------------AAAGCCCCGCGTTGAATGAAC------TGGATTGC--CAA------------------------------------C---------------------------------------------TAGCATAGTCCC-GACCC----------------------------CC-AA-----AA--GTATTGTTGTAATCTTTTCC-AAACTTTTCTTCGACTCGATTCCATACTACGAC-------AACTA-----------CTACA-TCGATC-C---TCAGTGGCAACATTGCAACAACAGCAGCAGCAGCA------------ACATCTTCGCCA------------
droBia1 scf7180000302292:3812874-3813035 + C-----------GC-------------------------------------------------------------------------------GCA------------------------------------AGAGCCCCGCGTTGAATGAAC------TGGATTGC--CAA------------------------------------C---------------------------------------------TAGCATAGCCCC-GACTC----------------------------CC-AA-----AA--GTATTGTTGTAATCTTTTCC--AACTTTTCTTCGACTCGATTCCATACTGCGAC-------AACAAC--------TACGACA-CCGA---C---TCAGTGGCAACAATGCAACAGCAGCAGCAG-----------------------------------------
droTak1 scf7180000415795:742340-742515 + TCTC--ACCCACTC------------------------------------------------------------------------AC--------------------------------------------AAAG-CCCGCGTTGAATGAAC------TGGATGGC--CAA------------------------------------C---------------------------------------------TAGCATAGCCCC-GTCTC----------------------------CC-AA-----AA--GTATTGTTGTAATCTTTTCC--AACTTTTCTTCGACTCGATTCCATACTGCGAC-------TACAAC--------TACGACC-TCGAAT-A---TCAGTGGCAACGTTGCAACAACAGCAGCAGCAGCA------------------------------------
droEug1 scf7180000409672:736025-736164 - A-----------------------------------------------------------------------------------------CGTACA------------------------------------AAATCCCCGCGTTGAATGAAC------TGGATTGC--CAA------------------------------------C---------------------------------------------TAGCATAGCCCC-GAATC----------------------------CC-AA-----AA--GTATTGTTGTAATCTTTTCC--AACTTTTCTTCGAATCGATTCCATACTACGAC-------AACAA-----------CGACA-TCGA---A---TCAGTGGCAA-------------------------------------------------------------
dm3 chr2R:11825362-11825540 - TCTCTCACCCACTC------------------------------------------------------------------------ACGACGTACA------------------------------------AATGCTTCGCGTTGAATGAAC------TGGATCGC--CAA------------------------------------C---------------------------------------------TAGCATAGTCCCAGACCC----------------------------CC-AA-----AA--GTATTGTTGTAATCTTTTTC--AACTTTTCTTCGACTCGATTCCATACTACGAC-------AACTAC-------CTACGACA-TCGA---C---GCAGTGGCAACATTGCAACAGCAGCAG--------------------------------------------
droSim2 2r:12495649-12495798 - C-----------TC------------------------------------------------------------------------ACGACGTAAA------------------------------------AATGCTTCGCGTTGAATGAAC------TGGATCGC--CAA------------------------------------C---------------------------------------------TAGCATAGTCCC-GACCC----------------------------CC-AA-----AA--GTATTGTTGTAATCTTTTCC--AACTTTTCTTCGACTCGATTCCATACTACGAC-------AACTAC-------CTACGACA-TCGA---C---GCAGTGGCAA-------------------------------------------------------------
droSec2 scaffold_1:9325601-9325757 - TC----ACCCACTC------------------------------------------------------------------------ACGACGTACA------------------------------------AATGCTTCGCGTTGATTGAAC------TGGATCGC--CAA------------------------------------C---------------------------------------------TAGCATAGTCCC-GATCC----------------------------CC-AA-----AA--GTATTGTTGTAATCTTTTTC--AACTTTTCTTCGACTCGATTCCATACTACGAC-------AACTAC-------CTACGACA-TCGA---C---GCAGTGGCAA-------------------------------------------------------------
droYak3 2R:17156645-17156828 + C-----------TC------------------------------------------------------------------------ACGACGTATA------------------------------------AAAGCTTCGCGTTGAATGAAC------TGGATCGC--CAA------------------------------------C---------------------------------------------TAGCATATTCCC-GACCCC---------------------------CC-AA-----AA--GTATTGTTGTAATCTTTTCC--AACTTTTCTTCGACTCGATTCCATACTACGAC-------AACTA-----------CGACA-TCGC---C---GCAGTGGCAACATTGCAACAGCAGCAGCAGCACCA------------ACATCCTCGCCA------------
droEre2 scaffold_4845:14032265-14032451 + C-----------TC------------------------------------------------------------------------ACGACGTAAA----------------------------A-------AAAGCTTCGCGTTGAATGAAC------TGGATCGC--CAA------------------------------------C---------------------------------------------TAGCATAGTCCC-GACCC----------------------------CC-AA-----AA--GTATTGTTGTAATCTTTTCC--AACTTTTCTTCGACTCGATTCCATACTACGGC-------AACAA-----------CGACA-TCGA---CGTGGCAGTGGCAACATTGCAACAGCAGCAGCAGCACCA------------ACATCCGCGCCA------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TTAT----------GCATAC---------------------------------------------------------------------ACGTAAA----------------------------G-ACCCACAA-----CGCGTTACGTTAA-------TGGATTGC--AAC--GTTATTT-CCACTACTACTACAAACCGTTTACTACCC------ATAGTAACACAGCTTAAGTGCCCGA----AAGA----------CA-------TTCG---------------------------CC-AT-----ATGAGTATTGTTGTAATCTGTTTT--AAATTTTCTTCGCATCGATTCCATACGGCGAC-------ACCAA-----------CAACA-ACAA--CA---ACAGCGACACTCTTGCAGCAGCAGCAGCAGCAACA------------ACAACTTCGCCACGTCGTG-----SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................TTAAGTGCCCGA----AAGA----------CA-------..................................................................................................................................................................................................................1811.001000000000000000000000100000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................CGCATCGATTCCATACGGCGA................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................GTAACACAGCTTAAGTGCCCG..............................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA------------ACAACTTCGCCACGTCGT......2111.001000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................TCTGTTTT--AAATTTTCTTCGC..................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................A-------TTCG---------------------------CC-AT-----ATGAGTATTGTT.............................................................................................................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................................AAGTGCCCGA----AAGA----------CA-------TTCG---------------------------...................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................CA-ACAA--CA---ACAGCGACACTCT..........................................................2111.001000000000000000000000000000000000000000100000000000000000000000
........................................................................................................................................................................................................................................................................................................................GAGTATTGTTGTAATCTGTT...................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................TTTTCTTCGCATCGATTCCAT.......................................................................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
........................................................................................................................................................................................ACTACTACTACAAACCGTT....................................................................................................................................................................................................................................................................................1911.001000000000000000000000010000000000000000000000000000000000000000
...................................................................................................................................................GTTAA-------TGGATTGC--AAC--GTTAT............................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
...........................................................................................GTAAA----------------------------G-ACCCACAA-----CGCGTTA.............................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................CGAC-------ACCAA-----------CAACA-ACAA--CA---ACAGC..................................................................2520.501001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................CAACA-ACAA--CA---ACAGCGACAC.............................................................2130.331000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAACA------------ACAACTT.................2170.141000000000000000000000000100000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAACA------------ACAAC...................23200.051000000000000000000000000100000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCAACA------------........................20200.051000000000000000000000000000010000000000000000000000000000000000
droMoj3
C-----------TTGCATTC---------------------------------------------------------------------ACGTTACT-----------------------TAAAGTACCCACAA-----CGCGTTA--CGTAA------TGGATTGC--TAC--GTTATAAACTACTACTACTACAAA--------TACCCC--------GTAACACAGTTTTAGTGCCCGA----ACGA----------CA-------TACG---------------------------CCAAA-----ATGTGTTTTGTTGTAATCTCTTTT--AAATTTTCTTCGAATTGATTCCATACTACGAT-------GATAA-----------CAACG-ACGAC----------CAACAGCGCCGAAACAGCAGCA---------------------ACAACTTCGCCACGTCGCGACGCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCA---------------------ACAACTTCGCCACGTCGCGA....2911.001100000
.........................................................................................................................................................................................................................................................................................................................................................................CTACGAT-------GATAA-----------CAACG-ACG...............................................................................2011.001000010
droGri2
T-----------GC-----------------------------------------------------------------------------GTAAA------------------------TGAAG-ACCCAAA---ACACGCGTTACGTTAAC-------GGATTGCGCTAC--GCTATGAAAAACTGCTACTG-------------ACCCCAAAAAACAATAACAC---TTATGTGCTTAAGAGTTCCTAAAAAAAGACATAACA-TACGTTCCACCACCACTCCAAACCCCCTCTCCTCCAAA-----ATGTGTTTTGTTGTAATCTCTTTT--ACATTTTCTTCGAATCGATTCCATACGACGAC-------GACAA-----------CGAC---------------AACAGCGACACTGCAGCAGCAGCAACA---------------------ACGTCGCCCCGCCGCG-----SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
T-----------ATGTATA-------------------------------------------------------------------------TATA------------------------------------A------AGTACTAACTTTT-------TAGATTCA--TAATCATTAATT-CCATAACTCC--------A--TTCTTCT-----------CAACATGGCAAAAAAAAAAAA----AAG----------TAAACCC----------------------------------CC-ATTCAAATC--ATTTTGTTGTAATCAAATTTC-G-----------------------ACTTCGAC-------TG--------------------------------TAATCGCAGCAACGCAGCAGCAGCAGCAGCAACAACAACGACAACAACAACATCGCCACGTCGAA-----SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................................................................TC-G-----------------------ACTTCGAC-------TG--------------------------------TAATCGC...............................................................2012.00220000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACAACAACATCGCCACGT.........2211.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACGCAGCAGCAGCAGCA..........................................2120.50100100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAACAACGA.............................19170.12200020
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACAACGACAAC.........................20120.08100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAACAACGAC............................18200.05100010
dp5
CTTT----------GCCCA-CCCCAATCCACGATTCCTTTGGAATACTACTTCTTTATCGGGTACTCTACTCCACTCATTCATCGC----------CTACCCTAACCACTCTAGCGCGTT------------AA-----CGCGTTATACGCAA------CGGACTGC--C-------------------------------TCGA------------------------------------ATAGTTGCCAACCAAACACACCAAA-GACTCG---------------------------CC-AA-----AC--GTA---TTGTAATATTTTCC--AACTTTTCTTCGAATCGATTCCATACTACGAC-------GACAG--------------------------------CCGCAATGCTACAGCAGCAG---CA------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................CATCGC----------CTACCCTAACCACTCTAG.............................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.......................................................................................................................T------------AA-----CGCGTTATACGCAA------CGGACTGC--C-------------------------------T.....................................................................................................................................................................................................................................................................................2711.0011000000000
droPer2
CTTT----------GCCCA-CCCCAATCCACGATTCCTTTGGAATACTACTTCTTTATCGGGTACTCTACTCCACTCATTCATCGC----------CTACCCTAACCACTCTAGCGCGTT------------AA-----CGCGTTATACGCAA------CGGACTGC--C-------------------------------TCGA------------------------------------ATAGTTGCCAACCAAACACACCAAA-GACTCG---------------------------CC-AA-----AC--GTA---TTGTAATATTTTCC--AACTTTTCTTCGAATCGATTCCATACTACGAC-------GACAG--------------------------------CCGCAATGCTACAGCAGCAG---CA------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................ATCGC----------CTACCCTAACCACTCTAGCGCGT........................................................................................................................................................................................................................................................................................................................................................................2811.001001000
.................................................................................................................................................ATACGCAA------CGGACTGC--C-------------------------------T.....................................................................................................................................................................................................................................................................................1811.001100000
.................................................................................................................................................ATACGCAA------CGGACTGC--C-------------------------------TCGA------------------------------------ATAGT.........................................................................................................................................................................................................................................2611.001100000
droAna3
G-----------T--------------------------------------------------------------------------------ACA------------------------------------GA--ACCAGAGCCAACTGAAA------AGGTTTCG--CTA------------------------------------CTC------A------------------------------------GAGCTTAGC-TC-GACTT----------------------------TC-GA-----AAACG---TATTGTAATCTTTTTG--AACTTTTCTCCGACTCGTTTTCATAA------CTTCGACTACGAC--------TCCGACATCCGCGACA---AAAGCAGCTCCGTCGCAGCAGCAACACCAGCAGCA------------AC----------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................................................................ATTGTAATCTTTTTG--AACTTTTCTC.....................................................................................................................................2511.001010000
.....................................................................................................................................................GAAA------AGGTTTCG--CTA------------------------------------CTC------A------------------------------------GA...............................................................................................................................................................................................................................2111.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTCGCAGCAGCAACACCA..........................................2020.501100000
droBip1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTGTAATCTTTTTGTAAACTTTTATTCGACTCGTTTTCATAA------CTTCGACTACA------------CGACCAACGCGCCA---AAAGCAGCACCGTCGCAGCAGCAACACCAGCAGCA------------AC----------------------SizeHit CountTotal NormTotal
No Reads
droKik1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGTTGTAATCTTTTTCCAAACTTTTCTTCGACTCGATTCCATACTGCGAC---C---AACTA-----------TGACT-ACGA-------AAAGCAGCAGCATGGCAGCACCAGCAGCAACAGCA------------ACATCTTCGCCAG-----------SizeHit CountTotal NormTotal
No Reads
droFic1
G-----------------------------------------------------------------------------------------CGTCCG------------------------------------AAAGACCCGCGTTGAATAAAC------TGGATTGC--CAA--G---------------------------------C---------------------------------------------TAGCATAACCCC-GACCC----------------------------CC-AA-----AA--GTACTGTTGTAATCTTTTCC--AACTTTTCTTCGACTCGATTCCATACTACGA---------------------------CA-TCGAT--C---CCAGTGGCCATAGTGCAACACAA------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
C-----------TC------------------------------------------------------------------------ACTA-----------------------------------------------CCCGCGTTGAATGAACTACTATTGGATTGC--CAACTGCCA---ACTACCA---------ACTATCAA---C---------------------------------TAGCAAC----------TAGCCCC-GCACC----------------------------CC-AA-----AA--GTATTGTTGTAATCTTTTCC-AAACTTTTCTTCGACTCGATTCCATACTGCGAC-------AACTACTACGCTACTACGACA-TCGATA-A---TCAGTG-----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
G-----------------------------------------------------------------------------------------CGTACT------------------------------------AAAGCCCCGCGTTGAATGAAC------TGGATTGC--CAA------------------------------------C---------------------------------------------TAGCATAGTCCC-GACCC----------------------------CC-AA-----AA--GTATTGTTGTAATCTTTTCC-AAACTTTTCTTCGACTCGATTCCATACTACGAC-------AACTA-----------CTACA-TCGATC-C---TCAGTGGCAACATTGCAACAACAGCAGCAGCAGCA------------ACATCTTCGCCA------------SizeHit CountTotal NormTotal
No Reads
droBia1
C-----------GC-------------------------------------------------------------------------------GCA------------------------------------AGAGCCCCGCGTTGAATGAAC------TGGATTGC--CAA------------------------------------C---------------------------------------------TAGCATAGCCCC-GACTC----------------------------CC-AA-----AA--GTATTGTTGTAATCTTTTCC--AACTTTTCTTCGACTCGATTCCATACTGCGAC-------AACAAC--------TACGACA-CCGA---C---TCAGTGGCAACAATGCAACAGCAGCAGCAG-----------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TCTC--ACCCACTC------------------------------------------------------------------------AC--------------------------------------------AAAG-CCCGCGTTGAATGAAC------TGGATGGC--CAA------------------------------------C---------------------------------------------TAGCATAGCCCC-GTCTC----------------------------CC-AA-----AA--GTATTGTTGTAATCTTTTCC--AACTTTTCTTCGACTCGATTCCATACTGCGAC-------TACAAC--------TACGACC-TCGAAT-A---TCAGTGGCAACGTTGCAACAACAGCAGCAGCAGCA------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
A-----------------------------------------------------------------------------------------CGTACA------------------------------------AAATCCCCGCGTTGAATGAAC------TGGATTGC--CAA------------------------------------C---------------------------------------------TAGCATAGCCCC-GAATC----------------------------CC-AA-----AA--GTATTGTTGTAATCTTTTCC--AACTTTTCTTCGAATCGATTCCATACTACGAC-------AACAA-----------CGACA-TCGA---A---TCAGTGGCAA-------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TCTCTCACCCACTC------------------------------------------------------------------------ACGACGTACA------------------------------------AATGCTTCGCGTTGAATGAAC------TGGATCGC--CAA------------------------------------C---------------------------------------------TAGCATAGTCCCAGACCC----------------------------CC-AA-----AA--GTATTGTTGTAATCTTTTTC--AACTTTTCTTCGACTCGATTCCATACTACGAC-------AACTAC-------CTACGACA-TCGA---C---GCAGTGGCAACATTGCAACAGCAGCAG--------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................CGACGTACA------------------------------------AATGCTTCGCGT...............................................................................................................................................................................................................................................................................................................................................21116.00160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000300000000000000000000900000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000010000000000000000100000000000
...........................................................................................................................................CGCGTTGAATGAAC------TGGATCGA--......................................................................................................................................................................................................................................................................................................................2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................TCGCGTTGAATGAAC------TGGATC..........................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TGAAC------TGGATCGC--CAA------------------------------------C---------------------------------------------TAGC.............................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................CGTACA------------------------------------AATGCTTCGCGTTGAA...........................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................CTACGAC-------AACTAC-------CTACGACA-..................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................C-------CTACGACA-TCGA---C---GCAGTGG................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................CGTTGAATGAAC------TGGATCGC--C.....................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................CTTCGCGTTGAATGAAC------TGGA............................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
..........................................................................................................................................................................................................................................................................................................................................TTTC--AACTTTTCTTCGACTCG..............................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................AC-------AACTAC-------CTACGACA-TCGA---C---.......................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................CAGACCC----------------------------CC-AA-----AA--GTATTGTT.............................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................CTACGACA-TCGA---C---GCAGTGGC...............................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................ATACTACGAC-------AACTAC-------CTACG......................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................TGAATGAAC------TGGATCGC--CAA------------------------------------C---------------------------------------------.................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000001000
...................................................................................................................................................ATGAAC------TGGATCGC--CAA------------------------------------C---------------------------------------------TAGCA............................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................CTTTTCTTCGACTCGATTCCA........................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................AAC------TGGATCGC--CAA------------------------------------C---------------------------------------------TAGCAT...........................................................................................................................................................................................................................2112.0020000000000000000000000000010000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................ATCGC--CAA------------------------------------C---------------------------------------------TAGCATAGTCCC.....................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................A-TCGA---C---GCAGTGGCAACATTG........................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000010000000000000000000000000000
..................................................................................................................................................AATGAAC------TGGATCGC--CAA------------------------------------C---------------------------------------------TG...............................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................AATCTTTTTC--AACTTTTCTTCG...................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................ACTAC-------CTACGACA-TCGA---C---GCA....................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.......................................................................................................................................................................................................................................................................................................................................CTTTTTC--AACTTTTCTTCGACT................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................CGAC-------AACTAC-------CTACGACA-TCG...............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................GCTTCGCGTTGAATGAAC------TGG.............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
TCTCTCACCCACTC------------------------------------------------------------------------ACGACGT..................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAACATTGCAACAGCAGCA.............................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................CTTTTTC--AACTTTTCTTCGACTCG..............................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...............................................................................................................................................................................................................................................................................................................AA-----AA--GTATTGTTGTAATCTTT....................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................CTACGACA-TCGA---C---GCAGTGG................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................TAATCTTTTTC--AACTTTTCTT.....................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................CA------------------------------------AATGCTTCGCGTTGAATGAA.......................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
...............................................................................................................................................TTGAATGAAC------TGGATCGC--CAA------------------------------------...............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................AC------TGGATCGC--CAA------------------------------------C---------------------------------------------TAGCATA..........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
................................................................................................................................................................................................................C---------------------------------------------TAGCATAGTCCCAGACCC----------------------------CC-................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAACATTGCAACAGCAGC..............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................AATGCTTCGCGTTGAATG.........................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....................................................................................................................................................TGAAC------TGGATCGC--CAA------------------------------------C---------------------------------------------TAGCA............................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.CTCTCACCCACTC------------------------------------------------------------------------ACGACGTA.................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................ACGACA-TCGA---C---GCAGTGGCAAC............................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................C----------------------------CC-AA-----AA--GTATTGTTGTAATC.......................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..TCTCACCCACTC------------------------------------------------------------------------ACGACGTA.................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
............................................................................................TACA------------------------------------AATGCTTCGCGTTGAAT..........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................ACTAC-------CTACGACA-TCGA---C---GCAG...................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................TAC-------CTACGACA-TCGA---C---GCAG...................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
...................................................................................................................................................ATGAAC------TGGATCGC--CAA------------------------------------C---------------------------------------------TAG..............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
C-----------TC------------------------------------------------------------------------ACGACGTAAA------------------------------------AATGCTTCGCGTTGAATGAAC------TGGATCGC--CAA------------------------------------C---------------------------------------------TAGCATAGTCCC-GACCC----------------------------CC-AA-----AA--GTATTGTTGTAATCTTTTCC--AACTTTTCTTCGACTCGATTCCATACTACGAC-------AACTAC-------CTACGACA-TCGA---C---GCAGTGGCAA-------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................TTCC--AACTTTTCTTCGACTCG..............................................................................................................................2112.00220000000000000000
.......................................................................................................................................GCTTCGCGTTGAATGAAC------TGGATCGC--......................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
........................................................................................................................................................................................................................................................................................................................................TTTTCC--AACTTTTCTTCGACT................................................................................................................................2111.00110000000000000000
droSec2
TC----ACCCACTC------------------------------------------------------------------------ACGACGTACA------------------------------------AATGCTTCGCGTTGATTGAAC------TGGATCGC--CAA------------------------------------C---------------------------------------------TAGCATAGTCCC-GATCC----------------------------CC-AA-----AA--GTATTGTTGTAATCTTTTTC--AACTTTTCTTCGACTCGATTCCATACTACGAC-------AACTAC-------CTACGACA-TCGA---C---GCAGTGGCAA-------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
C-----------TC------------------------------------------------------------------------ACGACGTATA------------------------------------AAAGCTTCGCGTTGAATGAAC------TGGATCGC--CAA------------------------------------C---------------------------------------------TAGCATATTCCC-GACCCC---------------------------CC-AA-----AA--GTATTGTTGTAATCTTTTCC--AACTTTTCTTCGACTCGATTCCATACTACGAC-------AACTA-----------CGACA-TCGC---C---GCAGTGGCAACATTGCAACAGCAGCAGCAGCACCA------------ACATCCTCGCCA------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................AAC------TGGATCGC--CAA------------------------------------C---------------------------------------------TAGC.............................................................................................................................................................................................................................1911.00101000000000
.............................................................................................ATA------------------------------------AAAGCTTCGCGTTGAATGAAC------TGG.............................................................................................................................................................................................................................................................................................................................2711.00101000000000
droEre2
C-----------TC------------------------------------------------------------------------ACGACGTAAA----------------------------A-------AAAGCTTCGCGTTGAATGAAC------TGGATCGC--CAA------------------------------------C---------------------------------------------TAGCATAGTCCC-GACCC----------------------------CC-AA-----AA--GTATTGTTGTAATCTTTTCC--AACTTTTCTTCGACTCGATTCCATACTACGGC-------AACAA-----------CGACA-TCGA---CGTGGCAGTGGCAACATTGCAACAGCAGCAGCAGCACCA------------ACATCCGCGCCA------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCACCA------------ACATCCG.................2311.0011000000

Generated: 05/16/2015 at 11:21 PM