ID:

dvi_5287

 Coordinate:

scaffold_12875:5113890-5114169 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-21.2 -21.2 -20.9

Flybase annnotation

exon [dvir_GLEANR_6812:1]; CDS [Dvir\GJ21455-cds]; exon [dvir_GLEANR_6812:2]; CDS [Dvir\GJ21455-cds]; intron [Dvir\GJ21455-in]

Repeatable elements

NameClassFamilyStrand
T-richLow_complexityLow_complexity+

Sense Strand Reads

---------------------#############################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGAATTGTTATTGTGATTATTATGTTTGTGCTTGTGGTGGCCAGAGAAATGCAGCGAACATGAATTAAAGTGCACATGAAATGTGTGCCACATAAAATTCATTGGCTGCACTTGTGGGGCAACGGCAACGGCAACAACACGCGTCAGAGGTTGCCCCCATCAAAAATAACACACACAGCGTCCGCCTGCCAGAAGGTGTGGCTGTAGCGCATTCATATTTGTTGGTATTTGTTGGCTCTTGAATTGTTTTTTTTTTTTATTTTTATTTTATACTCTTTTTTTTCTATCCGTTCTCATGCATTTTCTTCGATATTTTGTTGTGCTTTGCAGCGGCGTTGCCACCTCGCTAAGCTGCGCGGATTCCAGCACAGGCTCCAGTG
*************************************************************************************************************************************..........((((((...((..(((.((((..........(((((...(((((......)))))..)))))............)))).))).....))...)))).))...*************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060657
140_testes_total
 V053
head
 M028
head
 M047
female body
 V116
male body		 V047
embryo
 SRR1106729
mixed whole adult body
 SRR060682
9x140_0-2h_embryos_total
 GSM1528803
follicle cells		 SRR060677
Argx9_ovaries_total
 SRR060678
9x140_testes_total
 SRR060681
Argx9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 M027
male body		 SRR060670
9_testes_total
 SRR060664
9_males_carcasses_total
 SRR060679
140x9_testes_total
.....................................................................................................................................ACAACACGCGTCAGAGGTTGC.................................................................................................................................................................................................................................. 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................TGCGCGGATTCCAGCACAGG........ 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................TGCGCGGATTCCAGCACCGG........ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TTGTGGGGCAACGGCAACGG......................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................GTTGGTATTTGTTGGCTCTTGAATT....................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................GGCTGTAGCGCATTCATATTTGT.............................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................TCATTGGCTGCACTTGTGGGGC.................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................GTGCTTTGCAGTCGCGTTGCC........................................ 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................GTGCTTAGCAGTCGCGTTGCC........................................ 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTTGGTATTTGTTGGCTCTTGAATTG...................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................CACCTCGCTAAGCTGCGCGGAT................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................GTGCTTGTGGTGGCCAGAGAAATG......................................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TTGTTGGTATTTGTTGGCTCT............................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................AAAATAACACACACAGCGTCC..................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................GCCACCTCGCTAAGCTGCGC....................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................TATGTTTGTGCTTGTGGTGGC................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................CTGGTGGCCAGAGCAATGCA....................................................................................................................................................................................................................................................................................................................................... 20 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................................................................................................................GTTGTACTTTGGAGCGGCG............................................. 19 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTGGTTCCAGTTGTGGGGCAA.................................................................................................................................................................................................................................................................. 21 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................GAAGGTGTTTCTGTAGCGC.......................................................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................GCAGCGCGGATTCCAGAAC........... 19 2 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................ATTGGGGCAACGGCAACGGCAAC..................................................................................................................................................................................................................................................... 23 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.............................GCTTGTGACGGCCCGAGAAA........................................................................................................................................................................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................GGGCTTTGCAGTCGCGTTGCC........................................ 21 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................ACAACGAGGGTCAGAGGTTG................................................................................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................ATGGTGGCCAGAGGAATG......................................................................................................................................................................................................................................................................................................................................... 18 2 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................GCTTGTGGCGGCCCGTGAAA........................................................................................................................................................................................................................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................CAGAGTAATGCAGCGGACC................................................................................................................................................................................................................................................................................................................................ 19 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................................................................................................................................TGTTCTTAGCAGTGGCGTTG.......................................... 20 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..............................CTTGTGATGGCCCGTGAAA........................................................................................................................................................................................................................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................TTATGAGGTCTGTGCTTGTG........................................................................................................................................................................................................................................................................................................................................................ 20 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GCTTAACAATAACACTAATAATACAAACACGAACACCACCGGTCTCTTTACGTCGCTTGTACTTAATTTCACGTGTACTTTACACACGGTGTATTTTAAGTAACCGACGTGAACACCCCGTTGCCGTTGCCGTTGTTGTGCGCAGTCTCCAACGGGGGTAGTTTTTATTGTGTGTGTCGCAGGCGGACGGTCTTCCACACCGACATCGCGTAAGTATAAACAACCATAAACAACCGAGAACTTAACAAAAAAAAAAAATAAAAATAAAATATGAGAAAAAAAAGATAGGCAAGAGTACGTAAAAGAAGCTATAAAACAACACGAAACGTCGCCGCAACGGTGGAGCGATTCGACGCGCCTAAGGTCGTGTCCGAGGTCAC
***************************************************************************************************************************************..........((((((...((..(((.((((..........(((((...(((((......)))))..)))))............)))).))).....))...)))).))...************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528803
follicle cells		 V116
male body		 SRR060678
9x140_testes_total
 M061
embryo
 SRR060655
9x160_testes_total
 V053
head
 SRR060682
9x140_0-2h_embryos_total
 SRR1106713
embryo_0-2h
 SRR060686
Argx9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 V047
embryo
......................................CCGGTCTCTTTACGTCGCTTGTACT............................................................................................................................................................................................................................................................................................................................. 25 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................TTGCGGTTGTTGTGCG.............................................................................................................................................................................................................................................. 16 1 16 0.50 8 8 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................AAAAAAGATGGGCAAGAG..................................................................................... 18 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................AAAAAAAATAGGCAATAGT.................................................................................... 19 2 14 0.14 2 0 0 0 0 2 0 0 0 0 0 0
...............................................................................................................................................CGTCTCCAACGGGCGTAGCT......................................................................................................................................................................................................................... 20 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................CTCAACGGGGGAGAGATTCG............................ 20 3 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................GTAAAAGAAGCTTTAGGACAA............................................................. 21 3 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................GCCGTGGCAGTTGTTGTGGGC............................................................................................................................................................................................................................................. 21 3 10 0.10 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................................ATAAGGTCGAGTCCGAGGTT.. 20 3 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................CGGACGGTCTTCCCC...................................................................................................................................................................................... 15 1 12 0.08 1 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................................................................AAAAAAAATGATGGGCAAGAG..................................................................................... 21 3 12 0.08 1 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................................................AAAAAAAAAAAAATTAGATATGAGAA....................................................................................................... 26 3 18 0.06 1 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................CTCCAACAGGCCTAGTTTT....................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................................CCAACAGGGGTGGTCTTTA..................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:5113840-5114219 + dvi_5287 CGAATT------------------------------GTTATTG---TGATTATTATG------TTTGTGCTTGTGGTGGCC--------AGAGAAATGCAGCGAACATGAATTAA--AGTGCACATGAAATGTGTGCCACATAAAATTCATTGGCTGCACTTGTGGGGCAACGGCAACGGCAAC--AACACGCGTCAGAGGTTGCCCCCATCAAAAATAACACACACAGCGTCCGCCTGCCAGAAGGTGTGGCTGTAGCGCATTCATATTTGTTGGTATTTGTTGGCTCTTGA-------------------------ATTGTTTTTTTTTTT---TA--------------T-----------------------------------------------------------------------------------------------------------------TTTTATTTTATACT-----CTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTCTATCCGTT--CTCATGCATTTTCTTC---------------GAT---AT-TTTGTT-----------------------------------------------------GTG----------------------------------------------------------------CTTTG-------------CAGCGGCGTTGCCA------CC---------------------------------------------------------TCGCTAAGCTGCGCGGATTCCA--GCACAGGCTCCAGTG
droMoj3 scaffold_6496:24977001-24977330 - CGAATT------------------------------GTTATTG---TGCTTATTATG------TTTGTGCTGGTGA-------------AGAAAAATGCAGCTAAGATGAATTAA--AGTACTCACGAAATGCGTTCCACGTAAAACTCACTGGCTGCACCTGTGGGGCAGCAGCAGCAGCAAA----CGCGCGT-------------------------------------CTCGCTGCCCAGAGGTGTGGCTGAA----------------------------------------A-------TTAACTTAACATT---------------------AAT-----------------------TTTGCATTATTGTGTTTGCCGTTTTTAACTGTTATCCGATGCAATTGCA---------------------------------------------------------------------------------------------------------------------------------------------TTGCATTTGCATTTGCCTCTGCTTCT-GCTTTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTCTTTTTCTTTG-------------CAGCGGCGTTGCCA------CC---------------------------------------------------------TCCCTCAGCTGCGCCGACTCCA--GCACAGGATCCAGTG
droGri2 scaffold_15112:140850-141184 + CAAAACAA--AACTAT---------------ATT--GTTTTTG---TTGA------TAATTGTGT--TCTCTGTTGTTTTTTCGTTGCTGT----TCTCCACCAACATGTATTAAAAAGTGCACACACAATGTGGACGATTTAAAAT-AACAAAT--------------TGCTGCAGCAGCAAAAGAGCACGCGT---TGTTTGCCCCCGCT-----------GCAAAGTGTGCT----CCAAAAGGTGTGGCTGTA----------------------------------------G-------TTTTTTTTCCTTC---------------------TAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTC-------------------------ATTGCTGTT--------------------GTTGCTTGAACTGTTAATGCATTTTATTAAATTCGTTTGTTTTTTGTTG--TTGTTTTTATTTG-------------CAGCGGCGTTGCAA------CT---------------------------------------------------------TCGCTAAGCTGCGCCGATTCCA--GCACAGGATCCAGTG
droWil2 scf2_1100000004902:9678851-9679033 + CGCCTG------------------------------ACAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGC--------------------------------------------------TATTGCTGTCTTG--CTT-----TTGGCAATTGTTTGAATCTAT-----------------------------------------------------------------------------------------------CTCTTTTTGTCTTGCTCTCTT-----------------------CCTTTCTCTGGCTTGGTCACACACACATACGTATATATA------TACACA------------------------TGT-------CTG---------------------------------------------------------------------------------------------------------------------------------------------------------------GTATAT-TGTC--------------------------------------------------------ATCCATTGAGTA-------------------------------------------G--------------TGTTTCTACATTTAC--------------ATTTTG--------------------------------------------------------------------------------C--CCGCAGGTACCAAAG
dp5 XL_group1e:7381557-7381724 - TTTTTT------------------------------GGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG-----------------------------------------------------------------------------------GTTTGGGTCTTT-----------------------------------------------------------------------------------------------TTTGTTTTGTTTTGTTTGTTTTTTTTTTATTTTTTTATTTTCGGCCTGGC--------CAACTTTCACTTTA------TGCATTGTTGCCACATT--------------------------------------------------TCACAATTGCAATTGCACCTCTGCTTTGACTTGCACCAAAGATCCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--ACAA-TCGGCCAGAG
droPer2 scaffold_372:161-311 + GTGGTGGTAACGCCAT--------------------GTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTGTTGATTGGGTTTTGT-------------------------TTTGTTGTAGTTTTT----------------------------------------------------------AACTTTATTTTGGTTCACTTGTAAGTTTTTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT---TT-TTTATT-----------------------------------------------------AAG----------------------------------------------------------------TGTTT-------------CACTGTCCTTGGTG------ATTCACT--A--------------------------------------------------------TCTCCGCTTACTTCA--GTT----------CA
droAna3 scaffold_13266:5975382-5975531 + TTTGTT------------------------------GGTTTTG---TTTTTACTTTC------TTTATCTTTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTT---T---AC--------------GTTTTGT--------------------------------------------------------GT---TCTTT---------------------------T-----------GTTGTTTCTT----------------------TGGG------G-C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----------TTTAC---------------ACT---TT-TCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCACA--ATCTTTTGTTCTTTTGATTGAAATTTGATTTGTTCAGCTGTGTGGCA---------------------------------CATACAGTA
droBip1 scf7180000396721:808348-808486 - TGCTGT----CTGCTCGCTCGTGCAGCATTTA----AATTTCA---TTTT---TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------TTTTCTTTCTTTT---------------------TTTTTCTACTGCCATTTTTT-----------------------------------------------------------------------------------------------TAGATTTTTTATTTTTTACTTGCCATCTT-----------------------C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTG--------------------------CTGCAG-----------------------GCACATTTT---------------------------------------------------------------------------------------------------------------------------------------A--TTATTGCATTTTACA
droKik1 scf7180000302706:2093756-2093988 - TTGTTG------------------------------TTGT-TG---TTGT---TGTT------GTTGTCGCTGTGGTGGCT--------ATAAAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTGAACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGC--------CATTGCACACTTGGCCAAGTTTGGC------AACTTT------------------------TGA-------CGG-------------------CTGCTG-----------CGGCAACCAGCGAAG-CAAACCAGCTAACAACAAAACGAGTTGTGATGTGGCCGTTGTTATTGTTTGCCTGCTAGTATTTCTAACTATT--TTTTTTTCATGCTGTT---------------------------GTT-----------------------------------------G--------------------------------------------------------------TTGTTGTTGTTTTTGTA----------------------------------------------------------------------------------------------------------------------------------TCTAT
droFic1 scf7180000454111:500912-501052 - CATATTTA-----------------------------ATTGTA---CTTT---T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------GCTAGCGT-------------TTTCTTTTTTC---T---TC--------------GTTTTTT-----------------------------------------------------------TATCTTT---------------------------A-----------GTTTTTTTCT----------------------CAATTTTCCCCCTCCCATTGCAATTTTCGCAGGCGCGTG-----------------------------------------------------------------------------------------------CTGTAAAAGACGCGG-AGATCCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATTCTGCGG
droEle1 scf7180000491349:807425-807559 - AACCCAATTA-----T---------------TTTGATTTG--------CATATTCTG------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----------------------------------------------------------------------------------GTTCAGATCTTTTATTT---------------------------------------------------------------------------------------------TTTTCCTTTTGTTTCTTCTCTTTTTTT-------------------------------------------------------------------------TTTTGTATCTTCCTTT-GAATTCCATTTGGCTTTTGTTCCGTCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGTG---------------------------------------------------------------CAACAACA----------------------------------CT
droRho1 scf7180000764053:7893-8080 - GTTGCT--GATCGCATATTCAC--AACACTC-----GCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGA-----------------------------------------------------------------TTG-----TTTTCATTCAAATCGT----------------------------------------------TTTTTTTTGTTG----ATTTATTATTTTTTTGTGTGATTTTTGTTTTTAGATAT---------------------------------------------------------------------------------------------------------------------------------TTG---------------------------------------------------------------------------------------------------------------------------------------------GT---------------TCT---T-TGTTGTTGGTTGACGAGCAATAGAAACGCGTGCCACAACGTTGCGGTT--------------------GCAGT---------------------------------------------------------T----------------------------GTTTTT--------------------------------------------------------------------------------A--GCG-AGTGTTCGTTG
droBia1 scf7180000301592:216092-216207 + GCATAT------------------------------TCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-----------------------------------------------------------------------------------GTTCGGATCTTTGATTT---------------------------------------------------------------------------------------------TTTTCCTTTTGTTTCTTTTCTACTTTT-------------------------------------------------------------------------TTTTGTATCTTCCTTT-GAATTCCATTTGGCTTTTGTTCCGTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGTG---------------------------------------------------------------CAACAACA----------------------------------CT
droTak1 scf7180000415845:36590-36733 + GCATTC------------------------------GTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCCGCTCTTTGTTTA-TATTAACTGAGCAAGGGT-------------GACATTTTTTC---C---TG--------------G-----------------------------------------------------------------------------------------------------------------TTTTCATTTGCTTG-----CTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCTCCCCGTT--ACTTTTCAGTTCCTTT---------------------------AAT-----------------------------------------GAGGGTTTAAGTATT----------------------------------------------------------------ATTTG-------------CCCAAGGG---------------------------------------------------------------------------------------------------------TTGCC
droEug1 scf7180000408176:590304-590451 + TTGTCG------------------------------GCGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGT--------------------------------------------------TGTAGATTTT-----------------------------TCATTCATTTTTT-------------------------------------------TTTTTATGA--------------------TTTTAT-TACGACAT--------------------------TTGCTTTACCGTTTACAGTCGGTT--------AAGTACTTGTTTTT------GTTGTTGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCA-------------------------------------------G--------------C----------------------------GTT---TTTCTCC------------------------------------------------------------------TTGCTTTGGATTATTGGGGGCGATG
dm3 chrX:20964924-20965075 + GCTTTCAA----------------------------AGTG----TTG------GATTTATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---TA--------------G-----------------------------------------------------------------------------------------------------------------TTTTGTTTTGTTTT-----TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTGTTCGTT--CTGGCTCAGTGCAGCTAGTGGAATATAAAATGAGGGAT-TATC--------------------------------------------------------CTTCGGTGCCCA-------------------------------------------A--------------T----------------------------GTG---TTTCGCGTGGCCTCCACGC-------------------------------ACAGCA---------------------------------TCAACAGCG
droSim2 3r:17297367-17297491 + TTTTCT------------------------------TTTC--TTTAT------TATTTGTGTTAT------------TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-----TTTAC-------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----------TTTAC---------------GCT---TTTTTTGTCGGTTGAC-------------------------GTTGCTGTT--------------------GCTGCTGCGG-----------------------CGGCTGTCTATCATGG--AA-----------------------G--------------GTTTTT--------------------------------------------------------------------------------A--GCGGGGGCATTCGGG
droSec2 scaffold_6:2546995-2547098 + TTTTTA------------------------------TTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT---GTAATGGT----------------------------------------------TGTT-----------------------------TTTTTTTTTTTGTTACTTTT---------------------------------GC------------------------------TTTTTTTGAAACTATTTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTGTGTT---------------------------TT-CTT-----------------------------------------------------------------------------------------------------------TTTTAATTTTTTTTGTA----------------------------------------------------------------------------------------------------------------------------------TTTTG
droYak3 3R:28374455-28374638 + TCATTT------------------------------TTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAT-----------------------------------------------------------------TCT-----TTAACATTTTAACTGA----------------------------------------------TTTGTTACTTTA----TTTTATAATTATTTTATATTTCTTTGGTTTTAACATATT----------------------TATTTAT-------------------------------------------------------------------------TTTTGTTTCCATTCGG-GGCTTTTATGTTGACTTTGCGTAGTTGGCGATGCCAATCCCATGAGTGCAATGTTTCCCACCGGGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------------------------------------------------------------------ACAATACCA
droEre2 scaffold_4820:10324733-10324880 - GCGCTTTT-----------------------CT---TTTC--TTTAT------TATTTGTCTTAT--TTTCTTTTATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT---------------------------------AT------------------------------TTTTTTCTACTTTTTTTAC------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----------TTTAC---------------GCT---TT-TTTGTCGGTTGAC-------------------------GTTGCTG--------------------------CTGCGG-----------------------CGGCTGTCTATCATGG--AA-----------------------G--------------GTTTTT--------------------------------------------------------------------------------C--GCGGGGGCATTCGGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CGAATT------------------------------GTTATTG---TGATTATTATG------TTTGTGCTTGTGGTGGCC--------AGAGAAATGCAGCGAACATGAATTAA--AGTGCACATGAAATGTGTGCCACATAAAATTCATTGGCTGCACTTGTGGGGCAACGGCAACGGCAAC--AACACGCGTCAGAGGTTGCCCCCATCAAAAATAACACACACAGCGTCCGCCTGCCAGAAGGTGTGGCTGTAGCGCATTCATATTTGTTGGTATTTGTTGGCTCTTGA-------------------------ATTGTTTTTTTTTTT---TA--------------T-----------------------------------------------------------------------------------------------------------------TTTTATTTTATACT-----CTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTCTATCCGTT--CTCATGCATTTTCTTC---------------GAT---AT-TTTGTT-----------------------------------------------------GTG----------------------------------------------------------------CTTTG-------------CAGCGGCGTTGCCA------CC---------------------------------------------------------TCGCTAAGCTGCGCGGATTCCA--GCACAGGCTCCAGTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................AC--AACACGCGTCAGAGGTTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002020000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCGGATTCCA--GCACAGG........2012.002000000020000000000000000000000000000000000000000000000000000000
................................................................................................................................................................TTGTGGGGCAACGGCAACGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................GTTGGTATTTGTTGGCTCTTGA-------------------------ATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................................................................................................................................................GGCTGTAGCGCATTCATATTTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000001000000000000000000000000000000
...................................................................................................................................................TCATTGGCTGCACTTGTGGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................................................................................GTTGGTATTTGTTGGCTCTTGA-------------------------ATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000010000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------CC---------------------------------------------------------TCGCTAAGCTGCGCGGAT.....................2211.001000000000000000000000000000000000000000000000000000000000000001
..................................................................GTGCTTGTGGTGGCC--------AGAGAAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................TTGTTGGTATTTGTTGGCTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................AAAATAACACACACAGCGTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCA------CC---------------------------------------------------------TCGCTAAGCTGCGC.........................2011.001001000000000000000000000000000000000000000000000000000000000000
.....................................................TATG------TTTGTGCTTGTGGTGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
droMoj3
CGAATT------------------------------GTTATTG---TGCTTATTATG------TTTGTGCTGGTGA-------------AGAAAAATGCAGCTAAGATGAATTAA--AGTACTCACGAAATGCGTTCCACGTAAAACTCACTGGCTGCACCTGTGGGGCAGCAGCAGCAGCAAA----CGCGCGT-------------------------------------CTCGCTGCCCAGAGGTGTGGCTGAA----------------------------------------A-------TTAACTTAACATT---------------------AAT-----------------------TTTGCATTATTGTGTTTGCCGTTTTTAACTGTTATCCGATGCAATTGCA---------------------------------------------------------------------------------------------------------------------------------------------TTGCATTTGCATTTGCCTCTGCTTCT-GCTTTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTCTTTTTCTTTG-------------CAGCGGCGTTGCCA------CC---------------------------------------------------------TCCCTCAGCTGCGCCGACTCCA--GCACAGGATCCAGTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................AATGCAGCTAAGATGAATTAA--AGTACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
droGri2
CAAAACAA--AACTAT---------------ATT--GTTTTTG---TTGA------TAATTGTGT--TCTCTGTTGTTTTTTCGTTGCTGT----TCTCCACCAACATGTATTAAAAAGTGCACACACAATGTGGACGATTTAAAAT-AACAAAT--------------TGCTGCAGCAGCAAAAGAGCACGCGT---TGTTTGCCCCCGCT-----------GCAAAGTGTGCT----CCAAAAGGTGTGGCTGTA----------------------------------------G-------TTTTTTTTCCTTC---------------------TAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTC-------------------------ATTGCTGTT--------------------GTTGCTTGAACTGTTAATGCATTTTATTAAATTCGTTTGTTTTTTGTTG--TTGTTTTTATTTG-------------CAGCGGCGTTGCAA------CT---------------------------------------------------------TCGCTAAGCTGCGCCGATTCCA--GCACAGGATCCAGTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CGCCTG------------------------------ACAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGC--------------------------------------------------TATTGCTGTCTTG--CTT-----TTGGCAATTGTTTGAATCTAT-----------------------------------------------------------------------------------------------CTCTTTTTGTCTTGCTCTCTT-----------------------CCTTTCTCTGGCTTGGTCACACACACATACGTATATATA------TACACA------------------------TGT-------CTG---------------------------------------------------------------------------------------------------------------------------------------------------------------GTATAT-TGTC--------------------------------------------------------ATCCATTGAGTA-------------------------------------------G--------------TGTTTCTACATTTAC--------------ATTTTG--------------------------------------------------------------------------------C--CCGCAGGTACCAAAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGTCACACACACATACGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2214.00400040
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCACACACACATACGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200020
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTCACACACACATACGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGTCACACACACATACGGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCACACACACATACGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.33101000
dp5
TTTTTT------------------------------GGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG-----------------------------------------------------------------------------------GTTTGGGTCTTT-----------------------------------------------------------------------------------------------TTTGTTTTGTTTTGTTTGTTTTTTTTTTATTTTTTTATTTTCGGCCTGGC--------CAACTTTCACTTTA------TGCATTGTTGCCACATT--------------------------------------------------TCACAATTGCAATTGCACCTCTGCTTTGACTTGCACCAAAGATCCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--ACAA-TCGGCCAGAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCTGGC--------CAACTTTCACTTTA------TGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTTTGTTTTGTTTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020200000000
..............................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------------------------------------------------------TTTGTTTTGTTTTGTTTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20150.0710100000000
droPer2
GTGGTGGTAACGCCAT--------------------GTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTGTTGATTGGGTTTTGT-------------------------TTTGTTGTAGTTTTT----------------------------------------------------------AACTTTATTTTGGTTCACTTGTAAGTTTTTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT---TT-TTTATT-----------------------------------------------------AAG----------------------------------------------------------------TGTTT-------------CACTGTCCTTGGTG------ATTCACT--A--------------------------------------------------------TCTCCGCTTACTTCA--GTT----------CASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................................................................................................................................TTGATTGGGTTTTGT-------------------------TTTGTTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.306060000
......................................................................................................................................................................................................................................................................................TTGATTGGGTTTTGT-------------------------TTTGTTGTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.306050100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------------AAG----------------------------------------------------------------TGTTT-------------CACTGTCCTTGG..........................................................................................................21200.255050000
....................................................................................................................................................................................................................................................................................TGTTGATTGGGTTTTGT-------------------------TTTGTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.204000004
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------------AAG----------------------------------------------------------------TGTTT-------------CACTGTCCTTGGTG------ATT...............................................................................................26200.204040000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-------------CACTGTCCTTGGTG------ATTCACT--A--------------------------------------------------------TC..............................27200.204040000
....................................................................................................................................................................................................................................................................................TGTTGATTGGGTTTTGT-------------------------TTTGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.153030000
......................................TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTGTTGATTGGGTTTTGT-------------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.153030000
....................................GTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTGTTGATTGGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.153000003
...........................................................................................................................................................................................................................................................................................................................................TT----------------------------------------------------------AACTTTATTTTGGTTCACTTGTAAGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.153030000
....TGGTAACGCCAT--------------------GTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.102020000
.................................................................................................................................................................................................................................................................................TGGTGTTGATTGGGTTTTGT-------------------------TTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102010001
.TGGTGGTAACGCCAT--------------------GTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102020000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACT--A--------------------------------------------------------TCTCCGCTTACTTCA--GT.............21200.102001010
................................................................................................................................................................................................................................................................................TTGGTGTTGATTGGGTTTTGT-------------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102020000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTG------ATTCACT--A--------------------------------------------------------TCTCCGCTTACT....................26200.102020000
........................................................................................................................................................................................................................................................................................................................................TTTTT----------------------------------------------------------AACTTTATTTTGGTTCACTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.102020000
......................................TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTGTTGATTGGGTTTTGT-------------------------A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.102000002
......................................................................................................................................................................................................................................................................................TTGATTGGGTTTTGT-------------------------TTTGTTGTAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.102020000
....................................GTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTGTTGATTGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.102000002
.......................................G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTGTTGATTGGGTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000001
.....................................................................................................................................................................................................................................................................................................................................TAGTTTTT----------------------------------------------------------AACTTTATTTTGGTTCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-------------CACTGTCCTTGGTG------ATTCACT--A--------------------------------------------------------T...............................25200.051010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCTTGGTG------ATTCACT--A--------------------------------------------------------TCTCC...........................25200.051001000
....................................................................................................................................................................................................................................................................................TGTTGATTGGGTTTTGT-------------------------TTTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
............................................................................................................................................................................................................................................................................................................................................T----------------------------------------------------------AACTTTATTTTGGTTCACTTGTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------CACTGTCCTTGGTG------ATTCACT--A--------------------------------------------------------TCTC............................27200.051010000
...............T--------------------GTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTGTTGATTGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG------ATTCACT--A--------------------------------------------------------TCTCCGCTTACTTCA--GT.............27200.051010000
................................................................................................................................................................................................................................................................................................................................TGTTGTAGTTTTT----------------------------------------------------------AACTTTATTTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051010000
...................................................................................................................................................................................................................................................................................................................................TGTAGTTTTT----------------------------------------------------------AACTTTATTTTGGTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051010000
...................................................................................................................................................................................................................................................................................GTGTTGATTGGGTTTTGT-------------------------TT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000001
..........................................................................................................................................................................................................................................................................................TTGGGTTTTGT-------------------------TTTGTTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT-----------------------------------------------------AAG----------------------------------------------------------------TGTTT-------------CACTGTCCTTGG..........................................................................................................23200.051010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAG----------------------------------------------------------------TGTTT-------------CACTGTCCTTGGTG------ATT...............................................................................................25200.051010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------------AAG----------------------------------------------------------------TGTTT-------------CACTGTCCTTGGTG------..................................................................................................23200.051010000
.....................................TTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTGTTGATTGGGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAG----------------------------------------------------------------TGTTT-------------CACTGTCCTTGGTG------AT................................................................................................24200.051010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCTTGGTG------ATTCACT--A--------------------------------------------------------TCTCCGC.........................26200.051010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------------------------------------------------------------TGTTT-------------CACTGTCCTTGGTG------..................................................................................................20200.051010000
........................................................................................................................................................................................................................................................................................GATTGGGTTTTGT-------------------------TTTGTTGTAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
.................................................................................................................................................................................................................................................................................TGGTGTTGATTGGGTTTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000001
................................................................................................................................................................................................................................................................................................TTTGT-------------------------TTTGTTGTAGTTTTT----------------------------------------------------------AACTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTCCTTGGTG------ATTCACT--A--------------------------------------------------------TCTCCGC.........................28200.051010000
.......................................................................................................................................................................................................................................................................................TGATTGGGTTTTGT-------------------------TTTGTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
.......................................................................................................................................................................................................................................................................................TGATTGGGTTTTGT-------------------------TTTGTTGTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCTTGGTG------ATTCACT--A--------------------------------------------------------TCT.............................22200.051010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------------AAG----------------------------------------------------------------TGTTT-------------CACTGTCCTTGGTG------ATTC..............................................................................................27200.051010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCTTGGTG------ATTCACT--A--------------------------------------------------------TCTCC...........................24200.051010000
................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTTCACTTGTAAGTTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTT-------------CACTGTCCTTGGTG------ATTCACT--A--------------------------------------------------------................................27200.051010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGTCCTTGGTG------ATTCACT--A--------------------------------------------------------TC..............................24200.051010000
...............T--------------------GTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTGTTGATTGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000
.......................................G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTGTTGATTGGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000100
......................................TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTGTTGATTGGGTTTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAG----------------------------------------------------------------TGTTT-------------CACTGTCCTTGGTG------..................................................................................................22200.051010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-----------------------------------------------------AAG----------------------------------------------------------------TGTTT-------------CACTGTCCTTGGT.........................................................................................................23200.051010000
......................................TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTGTTGATTGGGTTTTGT-------------------------TTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051010000
..........................................................................................................................................................................................................................................................................................................................................TTT----------------------------------------------------------AACTTTATTTTGGTTCACTTGTAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-------------CACTGTCCTTGGTG------ATTCACT--A--------------------------------------------------------TA..............................26200.051010000
......................................................................................................................................................................................................................................................................................TTGATTGGGTTTTGT-------------------------TTTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-------------CACTGTCCTTGGTG------ATTCACT--A--------------------------------------------------------TCT.............................28200.051010000
........................................................................................................................................................................................................................................................................................................................................TTTTT----------------------------------------------------------AACTTTATTTTGGTTCACTTGTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051010000
droAna3
TTTGTT------------------------------GGTTTTG---TTTTTACTTTC------TTTATCTTTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTT---T---AC--------------GTTTTGT--------------------------------------------------------GT---TCTTT---------------------------T-----------GTTGTTTCTT----------------------TGGG------G-C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----------TTTAC---------------ACT---TT-TCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCACA--ATCTTTTGTTCTTTTGATTGAAATTTGATTTGTTCAGCTGTGTGGCA---------------------------------CATACAGTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TGCTGT----CTGCTCGCTCGTGCAGCATTTA----AATTTCA---TTTT---TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------TTTTCTTTCTTTT---------------------TTTTTCTACTGCCATTTTTT-----------------------------------------------------------------------------------------------TAGATTTTTTATTTTTTACTTGCCATCTT-----------------------C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTG--------------------------CTGCAG-----------------------GCACATTTT---------------------------------------------------------------------------------------------------------------------------------------A--TTATTGCATTTTACASizeHit CountTotal NormTotal
No Reads
droKik1
TTGTTG------------------------------TTGT-TG---TTGT---TGTT------GTTGTCGCTGTGGTGGCT--------ATAAAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTGAACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGC--------CATTGCACACTTGGCCAAGTTTGGC------AACTTT------------------------TGA-------CGG-------------------CTGCTG-----------CGGCAACCAGCGAAG-CAAACCAGCTAACAACAAAACGAGTTGTGATGTGGCCGTTGTTATTGTTTGCCTGCTAGTATTTCTAACTATT--TTTTTTTCATGCTGTT---------------------------GTT-----------------------------------------G--------------------------------------------------------------TTGTTGTTGTTTTTGTA----------------------------------------------------------------------------------------------------------------------------------TCTATSizeHit CountTotal NormTotal
No Reads
droFic1
CATATTTA-----------------------------ATTGTA---CTTT---T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------GCTAGCGT-------------TTTCTTTTTTC---T---TC--------------GTTTTTT-----------------------------------------------------------TATCTTT---------------------------A-----------GTTTTTTTCT----------------------CAATTTTCCCCCTCCCATTGCAATTTTCGCAGGCGCGTG-----------------------------------------------------------------------------------------------CTGTAAAAGACGCGG-AGATCCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATTCTGCGGSizeHit CountTotal NormTotal
No Reads
droEle1
AACCCAATTA-----T---------------TTTGATTTG--------CATATTCTG------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----------------------------------------------------------------------------------GTTCAGATCTTTTATTT---------------------------------------------------------------------------------------------TTTTCCTTTTGTTTCTTCTCTTTTTTT-------------------------------------------------------------------------TTTTGTATCTTCCTTT-GAATTCCATTTGGCTTTTGTTCCGTCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGTG---------------------------------------------------------------CAACAACA----------------------------------CTSizeHit CountTotal NormTotal
No Reads
droRho1
GTTGCT--GATCGCATATTCAC--AACACTC-----GCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGA-----------------------------------------------------------------TTG-----TTTTCATTCAAATCGT----------------------------------------------TTTTTTTTGTTG----ATTTATTATTTTTTTGTGTGATTTTTGTTTTTAGATAT---------------------------------------------------------------------------------------------------------------------------------TTG---------------------------------------------------------------------------------------------------------------------------------------------GT---------------TCT---T-TGTTGTTGGTTGACGAGCAATAGAAACGCGTGCCACAACGTTGCGGTT--------------------GCAGT---------------------------------------------------------T----------------------------GTTTTT--------------------------------------------------------------------------------A--GCG-AGTGTTCGTTGSizeHit CountTotal NormTotal
No Reads
droBia1
GCATAT------------------------------TCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-----------------------------------------------------------------------------------GTTCGGATCTTTGATTT---------------------------------------------------------------------------------------------TTTTCCTTTTGTTTCTTTTCTACTTTT-------------------------------------------------------------------------TTTTGTATCTTCCTTT-GAATTCCATTTGGCTTTTGTTCCGTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGTG---------------------------------------------------------------CAACAACA----------------------------------CTSizeHit CountTotal NormTotal
No Reads
droTak1
GCATTC------------------------------GTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCCGCTCTTTGTTTA-TATTAACTGAGCAAGGGT-------------GACATTTTTTC---C---TG--------------G-----------------------------------------------------------------------------------------------------------------TTTTCATTTGCTTG-----CTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCTCCCCGTT--ACTTTTCAGTTCCTTT---------------------------AAT-----------------------------------------GAGGGTTTAAGTATT----------------------------------------------------------------ATTTG-------------CCCAAGGG---------------------------------------------------------------------------------------------------------TTGCCSizeHit CountTotal NormTotal
No Reads
droEug1
TTGTCG------------------------------GCGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGT--------------------------------------------------TGTAGATTTT-----------------------------TCATTCATTTTTT-------------------------------------------TTTTTATGA--------------------TTTTAT-TACGACAT--------------------------TTGCTTTACCGTTTACAGTCGGTT--------AAGTACTTGTTTTT------GTTGTTGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCA-------------------------------------------G--------------C----------------------------GTT---TTTCTCC------------------------------------------------------------------TTGCTTTGGATTATTGGGGGCGATGSizeHit CountTotal NormTotal
No Reads
dm3
GCTTTCAA----------------------------AGTG----TTG------GATTTATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---TA--------------G-----------------------------------------------------------------------------------------------------------------TTTTGTTTTGTTTT-----TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTGTTCGTT--CTGGCTCAGTGCAGCTAGTGGAATATAAAATGAGGGAT-TATC--------------------------------------------------------CTTCGGTGCCCA-------------------------------------------A--------------T----------------------------GTG---TTTCGCGTGGCCTCCACGC-------------------------------ACAGCA---------------------------------TCAACAGCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---TA--------------G-----------------------------------------------------------------------------------------------------------------TTTTGTTTTGTTTT-----TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTGTTC...................................................................................................................................................................................................................................................................................................................3512.0020000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAAATGAGGGAT-TATC--------------------------------------------------------CTTCGGTG...................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................A--------------G-----------------------------------------------------------------------------------------------------------------TTTTGTTTTGTTTT-----TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT.............................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------------------GTG---TTTCGCGTGGCCGT....................................................................................1870.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-----TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTGTTCGT.................................................................................................................................................................................................................................................................................................................20130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................G-----------------------------------------------------------------------------------------------------------------TTTTGTTTTGTTTT-----TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT...........................................................................................................................................................................................................................................................................................................................22190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTT-----TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTG......................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTTGTTTT-----TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTT........................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTT-----TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTGTTC...................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTTGTTTT-----TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTT........................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTTTGTTTT-----TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT............................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTTTT-----TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTT........................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTTTTGTTTT-----TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTT..........................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTTTGTTTT-----TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTT.........................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTTT-----TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTGT.....................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTGTTCG..................................................................................................................................................................................................................................................................................................................17200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTT-----TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTGTT....................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TTTTCT------------------------------TTTC--TTTAT------TATTTGTGTTAT------------TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-----TTTAC-------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----------TTTAC---------------GCT---TTTTTTGTCGGTTGAC-------------------------GTTGCTGTT--------------------GCTGCTGCGG-----------------------CGGCTGTCTATCATGG--AA-----------------------G--------------GTTTTT--------------------------------------------------------------------------------A--GCGGGGGCATTCGGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTTGAC-------------------------GTTGCTC.........................................................................................................................................................................................................................15150.07100000000010000000
droSec2
TTTTTA------------------------------TTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT---GTAATGGT----------------------------------------------TGTT-----------------------------TTTTTTTTTTTGTTACTTTT---------------------------------GC------------------------------TTTTTTTGAAACTATTTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTGTGTT---------------------------TT-CTT-----------------------------------------------------------------------------------------------------------TTTTAATTTTTTTTGTA----------------------------------------------------------------------------------------------------------------------------------TTTTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TCATTT------------------------------TTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAT-----------------------------------------------------------------TCT-----TTAACATTTTAACTGA----------------------------------------------TTTGTTACTTTA----TTTTATAATTATTTTATATTTCTTTGGTTTTAACATATT----------------------TATTTAT-------------------------------------------------------------------------TTTTGTTTCCATTCGG-GGCTTTTATGTTGACTTTGCGTAGTTGGCGATGCCAATCCCATGAGTGCAATGTTTCCCACCGGGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------------------------------------------------------------------ACAATACCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GCGCTTTT-----------------------CT---TTTC--TTTAT------TATTTGTCTTAT--TTTCTTTTATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT---------------------------------AT------------------------------TTTTTTCTACTTTTTTTAC------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----------TTTAC---------------GCT---TT-TTTGTCGGTTGAC-------------------------GTTGCTG--------------------------CTGCGG-----------------------CGGCTGTCTATCATGG--AA-----------------------G--------------GTTTTT--------------------------------------------------------------------------------C--GCGGGGGCATTCGGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/16/2015 at 09:51 PM