ID:

dvi_5213

 Coordinate:

scaffold_12875:4450253-4450403 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-45.2 -45.2 -45.2

Flybase annnotation

CDS [Dvir\GJ20903-cds]; exon [dvir_GLEANR_6309:8]; intron [Dvir\GJ20903-in]

Repeatable elements

NameClassFamilyStrand
(CA)nSimple_repeatSimple_repeat+
mature
  1. dvi_5213  scaffold_12875:4450310-4450330 -
  2. scaffold_12963:9578634-9578654 -
  3. scaffold_12970:10019302-10019322 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCGCGCATAGCACACGATGCGCTAAGTGGCCTAAAGCAGCTAACCACGCTGTAAGTAGACGGCACATTAGCAACAAGTAGCTGCTGCCAACAAAATGTGCAGTCGCTTCGCTGAGTGTGTGTGTGTGTGTGTGTGTGTAGCTTTGAAGTGGTGTCAGTCCGTCACACACTCCTGACAGCCACTGGTGGGCCTAAGGGTCTGAGCCCAGGCTTGAGGGGCTAATCGGCCTATGCTAAGCGTTGGCAACACCA
**************************************************.....((.(((((((((..(((...((((((.(((((((......)).))))).)))..)))...)))..)))))).))).)).............(((((((((((..............)))))).)))))...(((((....))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR1106729
mixed whole adult body
 M027
male body		 M061
embryo
 M028
head
 M047
female body
 SRR1106727
larvae
 SRR060665
9_females_carcasses_total
 SRR1106728
larvae
 SRR060689
160x9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 V053
head
 V116
male body		 SRR060662
9x160_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060680
 9xArg_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 V047
embryo
 SRR060661
160x9_0-2h_embryos_total
 SRR060658
140_ovaries_total
 SRR060663
160_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
.................................................................................................................................................................................................................CCTGAGAGGGTAATCGGCC....................... 19 3 7 16.14 113 46 30 1 17 6 5 0 0 0 1 0 0 1 2 0 1 1 1 1 0 0 0 0
...................................................................................................................................................................................................................TGAGAGGGTAATCGGCC....................... 17 2 6 4.00 24 22 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GACTTGAGAGGGTAATCGGCC....................... 21 3 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GGCCTGAGAGGGTAATCGGCC....................... 21 3 2 2.50 5 3 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CCTGAGAGGGTAATCGGC........................ 18 3 20 1.95 39 2 0 0 1 18 0 0 0 1 0 11 1 0 1 0 0 0 0 0 2 0 1 1
.....CATAGCACACGATGCGCTAAGTGGC............................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................AAGTAGCCTAAAGCAGCTAACCACGCT......................................................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GAGAGGGTAATCGGCC....................... 16 2 20 0.80 16 0 0 0 0 0 7 0 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................CGCACTCCTGAAAGCCAGTGG.................................................................. 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GGCCTGAGAGGGTAATCGGC........................ 20 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GACCTGAGAGGCTAATCGGC........................ 20 3 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GTAGCTTTGCAGTGGCATC................................................................................................ 19 3 20 0.45 9 0 0 0 0 1 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GACCTGAGGGGGTAATCGGC........................ 20 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TGTGTGTGTGTGTGTAGCTTT........................................................................................................... 21 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GCCTGAGAGGGTAATCGGCC....................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................AACTAGCCGCTGCCAACAAA............................................................................................................................................................. 20 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................GTAGCTTTGCAGTGGCATCAG.............................................................................................. 21 3 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CGTGAGAGGGTAATCGGCC....................... 19 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................AGCTTTGCAGTGGCGTCAGA............................................................................................. 20 3 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................AGCTTTGCAGTGGTATCAGA............................................................................................. 20 3 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TGTAGCTTTGCAGTGGCATC................................................................................................ 20 3 13 0.08 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TGTGTGTGTGTGTGTGTGTA................................................................................................................ 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................CAGTCCGTCACACCCGCG............................................................................... 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AGCGCGTATCGTGTGCTACGCGATTCACCGGATTTCGTCGATTGGTGCGACATTCATCTGCCGTGTAATCGTTGTTCATCGACGACGGTTGTTTTACACGTCAGCGAAGCGACTCACACACACACACACACACACACATCGAAACTTCACCACAGTCAGGCAGTGTGTGAGGACTGTCGGTGACCACCCGGATTCCCAGACTCGGGTCCGAACTCCCCGATTAGCCGGATACGATTCGCAACCGTTGTGGT
**************************************************.....((.(((((((((..(((...((((((.(((((((......)).))))).)))..)))...)))..)))))).))).)).............(((((((((((..............)))))).)))))...(((((....))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 M047
female body
 SRR060672
9x160_females_carcasses_total
 SRR060655
9x160_testes_total
 V116
male body		 SRR060689
160x9_testes_total
 SRR060675
140x9_ovaries_total
 SRR060677
Argx9_ovaries_total
 M061
embryo
 SRR060656
9x160_ovaries_total
 SRR060657
140_testes_total
 SRR060659
Argentina_testes_total
 SRR060676
9xArg_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR060683
160_testes_total
 SRR060670
9_testes_total
.................................TTCGTCGATTGGTGCGACGGT..................................................................................................................................................................................................... 21 2 2 12.00 24 24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTCGTCCATTGGTGCGACGGT..................................................................................................................................................................................................... 22 3 1 9.00 9 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCCATTGGTGCGACGGT..................................................................................................................................................................................................... 21 3 4 5.50 22 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TCGTCGATTGGTGCGACGGT..................................................................................................................................................................................................... 20 2 2 5.50 11 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGGTCGATTGGTGCGACAGT..................................................................................................................................................................................................... 21 2 2 5.00 10 7 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0
.................................TTGGTCGATTGGTGCGACGTT..................................................................................................................................................................................................... 21 2 2 3.50 7 5 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0
................................TTTCGTCGCTTGGTGCGACGGT..................................................................................................................................................................................................... 22 3 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTCGTCGATTGGTGCGACGGT..................................................................................................................................................................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGATTGGTGCGACGAT..................................................................................................................................................................................................... 21 2 2 2.50 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................GCTTTCGTCGATTGGTGCGACGGT..................................................................................................................................................................................................... 24 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTGGTCGATTGGTGCGACACT..................................................................................................................................................................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................CTTCGTCGATTGGTGCGACAGT..................................................................................................................................................................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGATTAGTGCGACAGT..................................................................................................................................................................................................... 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................GTTTTCGTCGATTGGTGCGACGGT..................................................................................................................................................................................................... 24 3 2 2.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCCATTGGTGCGACGAT..................................................................................................................................................................................................... 21 3 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGGTCGATTGGTGTGACATT..................................................................................................................................................................................................... 21 2 2 1.50 3 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................ATTTGGTCGATTGGTGCGACGGT..................................................................................................................................................................................................... 23 3 2 1.50 3 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................ATTTGGTCGATTGGTGTGACGTT..................................................................................................................................................................................................... 23 3 2 1.50 3 0 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................TTGGTCGATTGGCGCGACAGT..................................................................................................................................................................................................... 21 3 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................CTTTGGTCGATTGGTGCGACAGT..................................................................................................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TGCATCGATTGGTGCGACAGT..................................................................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTAGATTGGTGCGACAGT..................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TGGTCGATTGGTGCGACAGT..................................................................................................................................................................................................... 20 2 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTGGTCGATTGGTGTGACAAT..................................................................................................................................................................................................... 22 3 2 1.00 2 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0
..................................TCGTCGATTGGTGCGACAGT..................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTAGTCGATTGGTGCGACAGT..................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTCGTCTATTGGTGTGACAGT..................................................................................................................................................................................................... 22 3 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGATTGGTGAGACAGA..................................................................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTCGTCCATTGGTGCGACGAT..................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TCGTCCATTGGTGCGACAGT..................................................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TCGTCGATTGGTGCGACAAT..................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGGTCGATTGGTGCGACAAT..................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTGGTCGATGGGTGCGACGTT..................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTGGTCGATTGGAGCGACAGT..................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTCGTGGATTGGTGCGACGGT..................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................GTCTTCGTCGATTGGTGCGACAGT..................................................................................................................................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGATTGGTGTGACAAT..................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTTGATTGGTGCGACAAT..................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTCGTCGATTGGTGGGACGGT..................................................................................................................................................................................................... 22 3 4 1.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................CTTCGTCGATTGGTGCGACGGT..................................................................................................................................................................................................... 22 3 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGGTCGATTGGTGCGACGT...................................................................................................................................................................................................... 20 2 2 1.00 2 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
................................TTTCGTCGATTGGTGTGACAAT..................................................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TGGGTCGATTGGTGCGACAGT..................................................................................................................................................................................................... 21 3 3 1.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TCGTCGATTGGTGTGACAGT..................................................................................................................................................................................................... 20 2 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTGCTCGATTGGTGCGACAGT..................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTGGTCGATTCGTGCGACACT..................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TGGTCGATTGGTGCGTCATT..................................................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGGTCGATTGGTGCGACTTT..................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGATTGGTGCGACTGT..................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTGGGTCGATTGGTGCGACAGT..................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGATTGGCGTGACAGT..................................................................................................................................................................................................... 21 3 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTCGTCGATTGGTGTGACAGT..................................................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGGTCGATTGGAGCGACAGT..................................................................................................................................................................................................... 21 3 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTGGTCGATTGGTGCGACGTT..................................................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTGGTCGATTGGTCCGACACT..................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TCGTCCATTGGTGCGACGGT..................................................................................................................................................................................................... 20 3 9 0.89 8 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGGTCGATGGGTGCGACGTT..................................................................................................................................................................................................... 21 3 6 0.83 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGGTAGATTGGTGCGACAGT..................................................................................................................................................................................................... 21 3 4 0.75 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................CTGGTCGATTGGTGCGACAGT..................................................................................................................................................................................................... 21 3 4 0.75 3 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTTGTCGATTGGTGCGACGGT..................................................................................................................................................................................................... 22 3 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGATTGGTGTGACGTT..................................................................................................................................................................................................... 21 2 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGGCCGATTGGTGCGACGTT..................................................................................................................................................................................................... 21 3 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGATTGGCGCGACGGT..................................................................................................................................................................................................... 21 3 9 0.67 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TGCGTCGATTGGTGCGACGGT..................................................................................................................................................................................................... 21 3 7 0.57 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................CTCGTCGATTGGTGCGACGGT..................................................................................................................................................................................................... 21 3 9 0.56 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................CTTGGTCGATTGGTGCGACGTT..................................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTTGGCGATTGGTGCGACAGT..................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGATTGGTGCGAAAGT..................................................................................................................................................................................................... 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGACTGGTGCGACAAT..................................................................................................................................................................................................... 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTGGTCGATTGGTGCGACCGT..................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................ATTTCGTCGATTGGTGTGACGGT..................................................................................................................................................................................................... 23 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................TTTGGTCGATTGGTGTGACAGTC.................................................................................................................................................................................................... 23 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TGGTCGATTGGTGTGACAT...................................................................................................................................................................................................... 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................CTTGGTCGATTGGTGCGACAGT..................................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTGGTCGATTGGTGCGACTGT..................................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TGCGTCGATTGGCGCGACAAT..................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................GTTTGTCGATTGGTGCGACAGT..................................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGATTGGTGGGACGTT..................................................................................................................................................................................................... 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................CGTCGATTGGTGCGACGGT..................................................................................................................................................................................................... 19 2 6 0.50 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................CTTTCGTCGATTGGTGCGACGGT..................................................................................................................................................................................................... 23 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTGGTCGATTGGTGCGACGCT..................................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTCGTCGATGGGTGTGACAGT..................................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTAGTCGATTGGTGTGACAGT..................................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................ATTCGTCGATTGGTGCGACAGG..................................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTGGTCGATTGTTGTGACATT..................................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGGCCGATTGGTGCGACAGT..................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCATCGATTGGTGCGACGGT..................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TCCGTCGTTTGGTGCGACAAT..................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGCTCGATTGGTGCGACAGT..................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................GGTCGATTGGTGCGACAGT..................................................................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGGTCGATTGGTGCGACAGA..................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TCTCGTCGATTGGAGCGACACT..................................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TGGGTCGATTGGTGCGACACT..................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGATTGGTGCGACGGA..................................................................................................................................................................................................... 21 3 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TCGTGGATTGGTGCGACGGT..................................................................................................................................................................................................... 20 3 8 0.38 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TCGGTCGATTGGTGCGACACT..................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGGTCGAATGGTGCGACAGT..................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGGTGGATTGGTGCGACGTT..................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTCGTCGATTGGCGCGACGGT..................................................................................................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGATTGTTGCGACGGT..................................................................................................................................................................................................... 21 3 12 0.33 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTCGTCGATTGGTGTGACGCT..................................................................................................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGGGCGATTGGTGCGACAGT..................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTGGTCGATTGGTGGGACAGT..................................................................................................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGGTCGATGGGTGCGACAGT..................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TCCGTCGATTGGTGAGACAAT..................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................GTTGGTCGATTGGTGCGACACT..................................................................................................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TCGTCGATTGGTGCGACTTA..................................................................................................................................................................................................... 20 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTCGTCGATTAGTGCGACGGT..................................................................................................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTGGATTGGTGCGACGGT..................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTGGTCGATTGGTGCGAAAGT..................................................................................................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................CGTCGATTGGTGTGACACT..................................................................................................................................................................................................... 19 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................CGTCGATTGGTGCGTCAAT..................................................................................................................................................................................................... 19 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TGGTCGATTGGTGCGACGTT..................................................................................................................................................................................................... 20 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTGGTCGATTGGTGTGACCT...................................................................................................................................................................................................... 21 3 6 0.33 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
.................................TGCGTCGATTGGTGCGACGAT..................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................ATCGTCGATTGGCGCGACAAT..................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGATTGTTGCGACAGT..................................................................................................................................................................................................... 21 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGGTCGATTGCTGCGACAGT..................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGGTCGATTGGTGCGAGGTT..................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGGTCGATTCGTGCGACACT..................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TCGTCCATTGGTGCGACGCT..................................................................................................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................GGTCGATTGGTGCGACACT..................................................................................................................................................................................................... 19 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGGTCGATTGGTGCGAAAAT..................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTGGTCGATTGGTGCGACGAT..................................................................................................................................................................................................... 22 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................ATTTGGTCGATTGGTGTGA......................................................................................................................................................................................................... 19 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGATCGGTGCGACGGTC.................................................................................................................................................................................................... 22 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTAGTCGATTGGTGTGACAAT..................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGATTGGTGCGAGGGT..................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGGTCGATCGGTGCGACGTT..................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGATTGGCGCGACGAT..................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTCGTCGATTGCTGCGACGCT..................................................................................................................................................................................................... 22 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TGGTCGATTGGTGCGCCAGT..................................................................................................................................................................................................... 20 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGGTCGATTGGTGCGTCTTT..................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGGTCGCTTGGTGCGACTTT..................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................GTTCGTCGATTGATGCGACGTT..................................................................................................................................................................................................... 22 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTCGTCGATTGGTGTGACGAT..................................................................................................................................................................................................... 22 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGGTCGATGGGTGCGACTTT..................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGGTCGAATGGTGCGACGTT..................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TGGTCGATTGGAGCGACAGT..................................................................................................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................CGTCGATTGGTGCGACGAT..................................................................................................................................................................................................... 19 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................GGTCGATTGGTGCGACGTT..................................................................................................................................................................................................... 19 2 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................TTTTCGTCGATTGGTGTGACAGT..................................................................................................................................................................................................... 23 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................TTCGTCGATGGGTGCGACGGT..................................................................................................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTGCGTCGACTGGTGCGACAGT..................................................................................................................................................................................................... 22 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................CGTCCATTGGTGCGACGGT..................................................................................................................................................................................................... 19 3 20 0.20 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGATTGGCGCGAAAAT..................................................................................................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TCGTCGATTGGTGCGAAGGT..................................................................................................................................................................................................... 20 3 11 0.18 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TGGTCGTTTGGTGCGACAAT..................................................................................................................................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGGTCGATTGGTGCGAAAGT..................................................................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGATTGGAGACACATT..................................................................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGATTGGGGCGACGGT..................................................................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGGTCGATTGGTGCGGC........................................................................................................................................................................................................ 18 2 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGATTGGTGCGACGGC..................................................................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGGCGATTGGTGCGACGGT..................................................................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGCTTGGTGCGACGAT..................................................................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGATTGGTGCAACGGT..................................................................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTTCTCGATTGGTGCGACAGT..................................................................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCTTCGATTGGTGCGACGGT..................................................................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTCGTCGATTGTTGCGACGGT..................................................................................................................................................................................................... 22 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TGGTCGTTTGGTGCGACAGT..................................................................................................................................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGATTGGTGAGACGAT..................................................................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCTTCGATTGGTGTGACGTT..................................................................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGGTCGATTGGTGCGACTTC..................................................................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTGGATTGTTGCGACAGT..................................................................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTTGTCGATTGGTGTGACGTT..................................................................................................................................................................................................... 22 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................TTGGTCGATTGGTGCGTC........................................................................................................................................................................................................ 18 2 14 0.14 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
.................................TTGGTCGATTGGTGCGTCGTT..................................................................................................................................................................................................... 21 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................ATCGTCGATTGGTGCGACGGT..................................................................................................................................................................................................... 21 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTTGTCGATTGCTGCGACGTT..................................................................................................................................................................................................... 21 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGATTGCTGTGACAGT..................................................................................................................................................................................................... 21 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGATTGTTGTGACACT..................................................................................................................................................................................................... 21 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCAATTGGTGCGACGGT..................................................................................................................................................................................................... 21 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGATTGGTGCCACGGT..................................................................................................................................................................................................... 21 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TCGTGGATTAGTGCGACAAT..................................................................................................................................................................................................... 20 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................CTCGTCGATTGGTGCGACGAT..................................................................................................................................................................................................... 21 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TCGTAGATTGGTGCGACGGT..................................................................................................................................................................................................... 20 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TGGTCGATTGGGGCGACAGT..................................................................................................................................................................................................... 20 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGTTTGGTGCGTCAAT..................................................................................................................................................................................................... 21 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................CTCGTCGATTGGTGTGACGTT..................................................................................................................................................................................................... 21 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TCGTCGATTGGTTCGACGTT..................................................................................................................................................................................................... 20 2 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGGTCGATTGGTGTGATAT...................................................................................................................................................................................................... 20 3 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGGTCAATTGGTGCGACAGT..................................................................................................................................................................................................... 21 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TCGGTCGATTGGTGCGACGTT..................................................................................................................................................................................................... 21 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTTGTCGATTTGTGCGACAGT..................................................................................................................................................................................................... 21 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGACTGGCGCGACAGT..................................................................................................................................................................................................... 21 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TCGTGGATTGGTGCGACGTA..................................................................................................................................................................................................... 20 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TGGTCGATTGGCGCGACAGT..................................................................................................................................................................................................... 20 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGATTAGTGCGACGGT..................................................................................................................................................................................................... 21 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TCGTCGATTGGTGCGAAGAT..................................................................................................................................................................................................... 20 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TGGTCGATTGGTGCGACTTC..................................................................................................................................................................................................... 20 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGCTTGGTGCGACGGT..................................................................................................................................................................................................... 21 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAACACACACACACACACATAGAAACTT........................................................................................................ 28 2 10 0.10 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................TCATCGATTGGTGCGACGGT..................................................................................................................................................................................................... 20 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGGTCGATTTGTGCGACGTT..................................................................................................................................................................................................... 21 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGTTTGGTGCGACGGT..................................................................................................................................................................................................... 21 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TCGTCAATTGGTGCGACGAT..................................................................................................................................................................................................... 20 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TCATCGATTGGTGCGACGAT..................................................................................................................................................................................................... 20 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGATTGGTGTGTCAAT..................................................................................................................................................................................................... 21 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTCGATTGTTGTGACAGT..................................................................................................................................................................................................... 21 3 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................CGTCGATTGGTGCCACGGT..................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................AGGTCGATTGGTGCGACGTT..................................................................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................ACTCACACACACACACACACACACAC.................................................................................................................. 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:4450203-4450453 - dvi_5213 TCGCGCATAGCACACGATGCGCTAAGTGGCCTAAAGCAGCTAACCACGCTGTAAGTA--GACG----------------------------------------------------------------------------------GC--------------AC-ATTA-----------------------GCAACAAGTAGCT-GCT--GCC------AACAAAATGTGCAGTCGCTTCG---------------------------------CTGA------GTGTGTGTGTGTGTGTGTGTGTGTAGC-TTTG----------------AAGTGGTGTCA-----------------------------------GTCCGTCACACACT-C---CTGA---------------C---------------------------------------AGCCACTGGTGGGCCTAAGGG-TCT----------------------------------------------------------------GAGCCCAGGCT-TGAG--GGGCTAATCG-GCCTATGCTA-AGCGTT--------GGCA----A--CACCA
droMoj3 scaffold_6496:25620529-25620789 + dmo_1249 TCGCGCATTGCCCACGATGCGCTAAGTGGCCTAAAGCAGCTAACCACGCTGTAAGTA--GATG-----------------------------------------------------------------------------------C--------------AC-ATTA-----------------------GCAACAAGTAGCG-CAT--GCATATGCCAACAAAATGTGCAGTCGCTTCG---------------------------------CTGA------TTGTG-------------------------TG----------------GAGT---GTCA---GTCAGTCAGTGAGTCCGTCCGTCCGTCCGTCCGTCCGCCACACACT-C---CTC----C-T----G---AC---------------------------------------AGCCA---GTGGGCCTAAGGG-TCT----------------------------------------------------------------CAGCTGAGGCT-TGAG--GGGCTAATCG-GCCTACGCTA-AGCGTT--------GCCA----A--CACCG
droGri2 scaffold_15245:498047-498300 + TCGCGTATAGCACACGATGCGCTAAGTGGCCTAAAGCAGCTAACCACGCTGTAAGTA--GACC--------------------------------------------------------------------------------TGCC--------------AC-----------------------AAGTGGCAACAAGTAGCA-TAT--GCC------AACCAAATGTGCACTCGCTTCG---------------------------------CTAAATGCGAGTGTGTGCGTGTG-GTGTGTGTGGAGTGTGTG----------------GAGTGGTGTCA---G-------------------------------GTCCATCACACACAGC---CTGA---------------------------------CT---G---------------------------GGCCGAAGGGCTCG----------------------------------------------------------------TTGCTCAGGCT-TGAG--GAGCTAATCG-GCCTATGCTA-AGCGTT--------GCCA----A--CACCG
droWil2 scf2_1100000004512:759167-759409 - TCGCGTATTGCCCATGATGCACTCAGTGGCCTAAAGCAGCTAACCACACTGTAAGTA--GCTTTCAAT------TGA---GGGA--------------T---------GG------------TTAGGAGGGAGG--GG-----------------------------------------------ACCA-AGCAACAAGTAGCC---T--GCC-----CAACAAAATGTGCAGTCGGTTGA---------------------------------CTGA------GT-----------------------------G----------------AAGTGGAGTGAAGT--------------------------------------GACAGAAT-A----------C-C----G---AC---------------------------------------TGCTATTGG---G------GGCTC-----------------------------------------------------------------TTACTGTAGCCTCAGAGCAGGCTAATCG-GCCTACGTTAAAGCGTT--------GCCAACAC---CACCG
dp5 3:4707387-4707505 + TGAATGTGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGTGTGTGTGTGTGTGTGTAAG-TATAATCCAAAACCCAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACAGTC-AGCAGTTGGCCAGACA-GACCCCAAAA-GACGTCGCGACCCAGACAACAGCAACAGCA
droPer2 scaffold_73:222339-222651 + TCGAAGATAGCCCATGATGCACTCAGCGGCCTAAAGCAGTTAACCACACTGTAAGTACGGATA---ATGCCAGCCCAGGGA-ACTGGCTGTGCCACGGGTATA---GGTAT---CAGGTTTC--------AGGT---GT---GCTGCGGTCTCGTCTCGTCTG-GTGCGACT-GCGATG------TGTG-CGCAACAAGTAGCC-ATCACACA-----CAACAAAATGTGCACTCACCTGAG--------------------------------------------------------------------------------------GCTA----------AACT--------------------------------------------GA-A---CTCAGAACGCGACTGAAGAGTCACTGTGTGTGG-TG--T---------------------G--ACAGGC------------------------------------------------------------------------GGGGCTCTGGGCCTGGCC-AGAAGCGAGCTAATCGGGCCCACGCTA-AGAGCT--------GC-----------CCG
droAna3 scaffold_13266:11939345-11939467 + TCCCGGATTGCCCACGACGCCCTGAGCGGCCTGAAGCAGTTAACCACTCTGTAAGTA--GACA---ATTCCCTGT-------------------------------------------------------------------ACTCC--------------AC-TCTG--CTT------------TGAG-AGCAACAAGTGGCC-C-------------GGCCAAATGTGCACTCACTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396547:540273-540400 - TCCCGGATTGCCCACGACGCCCTGAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTA--GACA---ATACCCCGT-------------------------------------------------------------------TTTCC--------------AC-TTTCCACT-GC--TT------TGAG-AGCAACAAGTGGCC-C-------------GGCCAAATGTGCACTCACTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302682:1975774-1976087 - TCCCGGATTGCCCATGATGCTCTCAGCGGCCTAAAGCAGTTAACCACTCTGTGAGTA--GATA---ATGCCACGA-----------------------GCATG---GATGTGTG--------TGGGGGGG------------AAGTC--------------ACTTTTA--CC--------------AAG-TGCAACAAGTAGCC-ATC--GC--------ACAAAGTGTGCACTCACTTGAGCTGCCCCGT----G---C------ACACGGTGGTGGTGGTGG-------------------------------------------TGGCA----------GAGT--------------------------------------------CA-C---CTGA--GC-T----G----------------------------------GAGTACCCACTGCTGCTGC----------TGCTG-CTGCTGGAGGGTATGAAGGG-------------------A-G----AC--ACAAGAGGTGCCTCTGGGCCTGGCC-AAAAGCGGGCTAATCG-GCCCACGCTA-AGCGTT-----------GGCTCA--CACCG
droFic1 scf7180000453948:1015699-1015995 - TCCCGGATTGCCCACGATGCCCTGAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTA--GATA---ATTCCCCATC--GGA-GG--------------TGGTGCAGGTG-----------------------GTGGTGTT-GCCACC--------------AC-TTTA--CTTGC--T-------GCAG-TGCAACAAGTAGCCGTTT--GCA-----GAACAAAATGTGCACTCACTTGAGTTTCCCTG---------C------ACCG------------GG-------------------------------------------GGCCA----------AAGT--------------------------------------------CA-G---CTGA--AG-----------------------------------------------------------------------------------------------GAACGGGGGCAGTGGAAGTGGG---GTGCACGTAAGAGGTGCCTCTGGGCCAGGCC-AGAAGCGAGCTAATCG-GCCCACGCTA-AGCGTTCCC-----GCCAGCTCA--CACCG
droEle1 scf7180000491107:766598-766891 - TCCCGGATTGCCCACGATGCCCTGAGCGGACTGAAGCAGCTAACCACTCTGTAAGTA--GATA---ATGCCCCTTGG------------------------CG---GAG-----------------------GT---GGT-GTTGCC--------------AC-TTTA--CT-GC--TCGGCAG-GCAG-TGCAACAAGTAGCC-ATT--GCA-----GAACAAAATGTGCACTCACTTGAGCTGCCCTG---------C------ACTG------------AG-------------------------------------------GGGGA----------AACT--------------------------------------------CA-C---CTGA--AC-C----G---AG-CACTGCATGCAT-TGCTC---GAG--G------------------------------------------------------GGA--------------------ACGGGGC---CAAGAGGTGCCTTTGGGCCGGGCC-AGAAGCGAGCTAATCG-GCCCACGCTA-AGCGTTCCT-----GCCAGCTCA--CACCG
droRho1 scf7180000779911:332694-332970 + TCCCGAATTGCCCACGATGCCCTGAGCGGACTAAAGCAGTTAACCACTCTGTAAGTA--GATA---ATGCCCGTTGG------------------------TG---GAG-----------------------GT---GGT-GCTGCC--------------AC-TTTA--CCTGC-----------CAG-TGCAACAAGTAGCC-ATT--GCA-----GAACAAAGTGTGCACTCACTTGAGCTGCCCTG---------C------ACTG---------------------------------------------------------GGGCA----------AACT--------------------------------------------CA-C---CTGA--AC-C----G---AG-------------TCGCATCGGGAG-GG------------------------------------------------------GG---------------------AATGGGC---CAAGAGGTGCCTTTGGGCCGGGCC-AGAAGCGAGCTAATCG-GCCTACGCTA-AGCGTTCCT-----GCCAGCTCA--CACCG
droBia1 scf7180000302292:3878164-3878468 + TCCCGGATTGCCCACGATGCCCTAAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTA--GATA---ATGCCCGCCGG------------------------CGCAGGAG-----------------------GT---GGTGTTTGCC--------------AC-TTTA--CTTGC-----------CAG-TGCAACAAGTAGCC-ATT--GCA-----GAACAAAATGTGCACTCACTTGAGCTGCCCCGG---TG---CACCCTGGCTG------------A--------------------------------------------GGGTA----------GACC--------------------------------------------CA-C---CTGA--AC-C----G---AG-------------TTGAATA----G----GAATAA-------------------------------------GGGTAGG-----------------GGGAGTGGGACTGGGC---TAAGAGCTGCCTTTGGGCCAGGCC-AGAAGCGAGCTAATCG-GCCCACGCTT-GGCGTTCCT-----GCCAGCTCA--CACCG
droTak1 scf7180000415795:805084-805387 + TCCCGGATTGCACACGATGCCCTAAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTA--GATA---ATGCCCAC----------------------GGTGGTG---GAGG------------TTAGGAGGAGGT--GGTT-TCTGCC--------------AC-TTTA--CTTGC--C----AGCGCAG-TGCAACAAGTAGCC-ATT--GCA-----GAACAAAATGTGCACTCACTTGAGCTGCCCTGCTG------C------ACTG----CTAACTGCAG-------------------------------------------GGGTA----------AACT--------------------------------------------CA-C---CTGA--AT-T----G---AG------------------T---GAA-TG------------------------------------------------------GG---------------------AATGGGCCTTTGAGAGGTGCCTTTGGGCCAGGCC-AGAAGCGAGCTAATCG-GCCCACGCTT-GGCGTTCCT-----GCCAGCTCA--CACCG
droEug1 scf7180000409672:678257-678565 - TCCCGAATTGCCCACGATGCCCTAAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTA--GATA---ATGCCCGCTGG---T-GCTGTC--------GGTGTTG---GAG-----------------------GT---GGTGTTTGCC--------------AC-TTTA--CTTGC--T---------AG-TGCAACAAGTAGCC-ATT--GCA-----GAACAAAATGTGCACTCACTTGAGCTGCCCTGC--TTGCTGC------ACTG---------------------------------------------------------GGGTA----------AACT--------------------------------------------CA-C---CTGA--AC-CA-CTG---AG-------------TTCCATAGAGGG-GGGGAGTAC-------------------------------------GGGTATG-----------------------------AGGC---AAAGAGCTGCCTTCGGGCCAGGCC-AGAAGCGAGCTAATCG-GCCCACGCTA-AGCGTTCCT-----GCCAGCTCA--CACCG
dm3 chr2R:11769837-11770123 - TCCCGGATTGCCCACGATGCACTAAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTA--GATA---ATACCCGGTGG------------------------TG---GAG-----------------------GT---GTT-GTTGCC--------------AC-TTTA--CTTGC--T-------GCAG-TGCAACAAGTAGCC-TTT--GCA-----GAACAAAATGTGCACTCACTTGAGCTGCCCTGCGGCTGC---TCCCGCACTC---------------------------------------------------------GGGTA----------AACT--------------------------------------------CA-C---CTGA--AC-CAACT--------------------TAAAT---GAG--G------------------------------------------------------GG---------------------AATGGGC---TAAGAGTTGCCTCTGGGCCAGGCC-AGAAGCGAGCTAATCG-GCCCACGCTT-AGCGTTCCT-----GCCAGCTTA--CACCA
droSim2 2r:12440148-12440434 - dsi_18439 TCCCGAATTGCCCACGATGCACTAAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTA--GATA---ATACCCGGTGG------------------------TG---GAG-----------------------GT---GTT-GTTGCC--------------AC-TTTA--CTTGC--T-------GCAG-TGCAACAAGTAGCC-TTT--GCA-----GAACAAAATGTGCACTCACTTGAGCTGCCCTGCGGCTGC---TCCCGCACTC---------------------------------------------------------GGGTA----------AACT--------------------------------------------CA-C---CTGA--AC-CAACT--------------------TAAAT---GAG--G------------------------------------------------------GG---------------------AATGGGC---TAACAGTTGCCTCTGGGCCAGGCC-AGAAGCGAGCTAATCG-GCCCACGCTT-AGCGTTCCT-----GCCAGCTTA--CACCG
droSec2 scaffold_1:9264332-9264472 - TCCCGAATTGCCCACGATGCACTAAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTA--GATA---ATACCCGGTGG------------------------TG---GAG-----------------------GT---GTT-GTTGCC--------------AC-TTTA--CT-------------GCAG-TGCAACAAGTAGCC-TTT--GCA-----GAACAAAATGTGCACTCACTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 2R:17212922-17213208 + TCCCGGATTGCCCACGATGCACTAAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTA--GATA---ATACCCGCTGG------------------------TG---GAG-----------------------GT---GTT-GTTGCC--------------AC-TTTA--CTGGC--A-------GCAG-TGCAACAAGTAGCC-TTT--GCA-----AAACAAAATGTGCACTCACTTGAGCTGCCCTGCGGCTGC---TCCCGCACTC---------------------------------------------------------GACTT----------CACT--------------------------------------------CA-C---CTGA--AC-CACCT--------------------TAAAT---GAG--G------------------------------------------------------GG---------------------AATGGGC---TAAGAGGTGCCTCTGGGCCAGGCC-AGAAGCAAGCTAATCG-GCCCACGCTT-AGCGTTCCT-----GCCAGCTTG--CACCG
droEre2 scaffold_4845:14088057-14088348 + TCCCGGATTGCCCACGATGCACTAAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTA--GATA---ATACCCGCTGG------------------------TG---GAG-----------------------GT---GTT-GTTGCC--------------AC-TTTA--CTTGC--T-------GCAG-TGCAACAAGTAGCC-TTT--GCA-----GAACAAAATGTGCACTCACTTGAGCTGCCCTGCGGCTGC---TTCCGCACTC---------------------------------------------------------ACATA----------AACT--------------------------------------------CA-CCGACTGA--AC-CGACT--------------------TAAAT---GAGGGG------------------------------------------------------GG---------------------AGTGGGC---TAAGAGGTGCCCCTGGGCCAGGCC-AGAAGCGAGCTAATCG-GCCCACGCTT-AGCGTTCCT-----GCCAGCTTA--CACCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TCGCGCATAGCACACGATGCGCTAAGTGGCCTAAAGCAGCTAACCACGCTGTAAGTA--GACG----------------------------------------------------------------------------------GC--------------AC-ATTA-----------------------GCAACAAGTAGCT-GCT--GCC------AACAAAATGTGCAGTCGCTTCG---------------------------------CTGA------GTGTGTGTGTGTGTGTGTGTGTGTAGC-TTTG----------------AAGTGGTGTCA-----------------------------------GTCCGTCACACACT-C---CTGA---------------C---------------------------------------AGCCACTGGTGGGCCTAAGGG-TCT----------------------------------------------------------------GAGCCCAGGCT-TGAG--GGGCTAATCG-GCCTATGCTA-AGCGTT--------GGCA----A--CACCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....CATAGCACACGATGCGCTAAGTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................TGTGTGTGTGTGTGTAGC-TTT............................................................................................................................................................................................................................................................................................................2130.331001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................TGTGTGTGTGTGTGTGTGTA..................................................................................................................................................................................................................................................................................................................20200.051000000001000000000000000000000000000000000000000000000000000000
droMoj3
TCGCGCATTGCCCACGATGCGCTAAGTGGCCTAAAGCAGCTAACCACGCTGTAAGTA--GATG-----------------------------------------------------------------------------------C--------------AC-ATTA-----------------------GCAACAAGTAGCG-CAT--GCATATGCCAACAAAATGTGCAGTCGCTTCG---------------------------------CTGA------TTGTG-------------------------TG----------------GAGT---GTCA---GTCAGTCAGTGAGTCCGTCCGTCCGTCCGTCCGTCCGCCACACACT-C---CTC----C-T----G---AC---------------------------------------AGCCA---GTGGGCCTAAGGG-TCT----------------------------------------------------------------CAGCTGAGGCT-TGAG--GGGCTAATCG-GCCTACGCTA-AGCGTT--------GCCA----A--CACCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............ACGATGCGCTAAGTGGCCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
...............................................................................................................................................................................................................................................................................................................................................................................TCCGTCCGTCCGTCCGCCAC....................................................................................................................................................................................................................................2011.001000010
droGri2
TCGCGTATAGCACACGATGCGCTAAGTGGCCTAAAGCAGCTAACCACGCTGTAAGTA--GACC--------------------------------------------------------------------------------TGCC--------------AC-----------------------AAGTGGCAACAAGTAGCA-TAT--GCC------AACCAAATGTGCACTCGCTTCG---------------------------------CTAAATGCGAGTGTGTGCGTGTG-GTGTGTGTGGAGTGTGTG----------------GAGTGGTGTCA---G-------------------------------GTCCATCACACACAGC---CTGA---------------------------------CT---G---------------------------GGCCGAAGGGCTCG----------------------------------------------------------------TTGCTCAGGCT-TGAG--GAGCTAATCG-GCCTATGCTA-AGCGTT--------GCCA----A--CACCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TCGCGTATTGCCCATGATGCACTCAGTGGCCTAAAGCAGCTAACCACACTGTAAGTA--GCTTTCAAT------TGA---GGGA--------------T---------GG------------TTAGGAGGGAGG--GG-----------------------------------------------ACCA-AGCAACAAGTAGCC---T--GCC-----CAACAAAATGTGCAGTCGGTTGA---------------------------------CTGA------GT-----------------------------G----------------AAGTGGAGTGAAGT--------------------------------------GACAGAAT-A----------C-C----G---AC---------------------------------------TGCTATTGG---G------GGCTC-----------------------------------------------------------------TTACTGTAGCCTCAGAGCAGGCTAATCG-GCCTACGTTAAAGCGTT--------GCCAACAC---CACCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
TGAATGTGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGTGTGTGTGTGTGTGTGTAAG-TATAATCCAAAACCCAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACAGTC-AGCAGTTGGCCAGACA-GACCCCAAAA-GACGTCGCGACCCAGACAACAGCAACAGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAA-GACGTCGCGACCCAG...............2011.0010000000010
...ATGTGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGTGTGTG..............................................................................................................................................................................................................................................................................................................................21200.0510000010000
................................................................................................................................................................................................................................................................................................GTGTGTGTGTGTGTGTGTGT...................................................................................................................................................................................................................................................................................................................20200.0510100000000
...................................................................................................................................................................................................................................................................................................TGTGTGTGTGTGTGTGTAAG-...............................................................................................................................................................................................................................................................................................................20200.0510100000000
droPer2
TCGAAGATAGCCCATGATGCACTCAGCGGCCTAAAGCAGTTAACCACACTGTAAGTACGGATA---ATGCCAGCCCAGGGA-ACTGGCTGTGCCACGGGTATA---GGTAT---CAGGTTTC--------AGGT---GT---GCTGCGGTCTCGTCTCGTCTG-GTGCGACT-GCGATG------TGTG-CGCAACAAGTAGCC-ATCACACA-----CAACAAAATGTGCACTCACCTGAG--------------------------------------------------------------------------------------GCTA----------AACT--------------------------------------------GA-A---CTCAGAACGCGACTGAAGAGTCACTGTGTGTGG-TG--T---------------------G--ACAGGC------------------------------------------------------------------------GGGGCTCTGGGCCTGGCC-AGAAGCGAGCTAATCGGGCCCACGCTA-AGAGCT--------GC-----------CCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TCCCGGATTGCCCACGACGCCCTGAGCGGCCTGAAGCAGTTAACCACTCTGTAAGTA--GACA---ATTCCCTGT-------------------------------------------------------------------ACTCC--------------AC-TCTG--CTT------------TGAG-AGCAACAAGTGGCC-C-------------GGCCAAATGTGCACTCACTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TCCCGGATTGCCCACGACGCCCTGAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTA--GACA---ATACCCCGT-------------------------------------------------------------------TTTCC--------------AC-TTTCCACT-GC--TT------TGAG-AGCAACAAGTGGCC-C-------------GGCCAAATGTGCACTCACTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TCCCGGATTGCCCATGATGCTCTCAGCGGCCTAAAGCAGTTAACCACTCTGTGAGTA--GATA---ATGCCACGA-----------------------GCATG---GATGTGTG--------TGGGGGGG------------AAGTC--------------ACTTTTA--CC--------------AAG-TGCAACAAGTAGCC-ATC--GC--------ACAAAGTGTGCACTCACTTGAGCTGCCCCGT----G---C------ACACGGTGGTGGTGGTGG-------------------------------------------TGGCA----------GAGT--------------------------------------------CA-C---CTGA--GC-T----G----------------------------------GAGTACCCACTGCTGCTGC----------TGCTG-CTGCTGGAGGGTATGAAGGG-------------------A-G----AC--ACAAGAGGTGCCTCTGGGCCTGGCC-AAAAGCGGGCTAATCG-GCCCACGCTA-AGCGTT-----------GGCTCA--CACCGSizeHit CountTotal NormTotal
No Reads
droFic1
TCCCGGATTGCCCACGATGCCCTGAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTA--GATA---ATTCCCCATC--GGA-GG--------------TGGTGCAGGTG-----------------------GTGGTGTT-GCCACC--------------AC-TTTA--CTTGC--T-------GCAG-TGCAACAAGTAGCCGTTT--GCA-----GAACAAAATGTGCACTCACTTGAGTTTCCCTG---------C------ACCG------------GG-------------------------------------------GGCCA----------AAGT--------------------------------------------CA-G---CTGA--AG-----------------------------------------------------------------------------------------------GAACGGGGGCAGTGGAAGTGGG---GTGCACGTAAGAGGTGCCTCTGGGCCAGGCC-AGAAGCGAGCTAATCG-GCCCACGCTA-AGCGTTCCC-----GCCAGCTCA--CACCGSizeHit CountTotal NormTotal
No Reads
droEle1
TCCCGGATTGCCCACGATGCCCTGAGCGGACTGAAGCAGCTAACCACTCTGTAAGTA--GATA---ATGCCCCTTGG------------------------CG---GAG-----------------------GT---GGT-GTTGCC--------------AC-TTTA--CT-GC--TCGGCAG-GCAG-TGCAACAAGTAGCC-ATT--GCA-----GAACAAAATGTGCACTCACTTGAGCTGCCCTG---------C------ACTG------------AG-------------------------------------------GGGGA----------AACT--------------------------------------------CA-C---CTGA--AC-C----G---AG-CACTGCATGCAT-TGCTC---GAG--G------------------------------------------------------GGA--------------------ACGGGGC---CAAGAGGTGCCTTTGGGCCGGGCC-AGAAGCGAGCTAATCG-GCCCACGCTA-AGCGTTCCT-----GCCAGCTCA--CACCGSizeHit CountTotal NormTotal
No Reads
droRho1
TCCCGAATTGCCCACGATGCCCTGAGCGGACTAAAGCAGTTAACCACTCTGTAAGTA--GATA---ATGCCCGTTGG------------------------TG---GAG-----------------------GT---GGT-GCTGCC--------------AC-TTTA--CCTGC-----------CAG-TGCAACAAGTAGCC-ATT--GCA-----GAACAAAGTGTGCACTCACTTGAGCTGCCCTG---------C------ACTG---------------------------------------------------------GGGCA----------AACT--------------------------------------------CA-C---CTGA--AC-C----G---AG-------------TCGCATCGGGAG-GG------------------------------------------------------GG---------------------AATGGGC---CAAGAGGTGCCTTTGGGCCGGGCC-AGAAGCGAGCTAATCG-GCCTACGCTA-AGCGTTCCT-----GCCAGCTCA--CACCGSizeHit CountTotal NormTotal
No Reads
droBia1
TCCCGGATTGCCCACGATGCCCTAAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTA--GATA---ATGCCCGCCGG------------------------CGCAGGAG-----------------------GT---GGTGTTTGCC--------------AC-TTTA--CTTGC-----------CAG-TGCAACAAGTAGCC-ATT--GCA-----GAACAAAATGTGCACTCACTTGAGCTGCCCCGG---TG---CACCCTGGCTG------------A--------------------------------------------GGGTA----------GACC--------------------------------------------CA-C---CTGA--AC-C----G---AG-------------TTGAATA----G----GAATAA-------------------------------------GGGTAGG-----------------GGGAGTGGGACTGGGC---TAAGAGCTGCCTTTGGGCCAGGCC-AGAAGCGAGCTAATCG-GCCCACGCTT-GGCGTTCCT-----GCCAGCTCA--CACCGSizeHit CountTotal NormTotal
No Reads
droTak1
TCCCGGATTGCACACGATGCCCTAAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTA--GATA---ATGCCCAC----------------------GGTGGTG---GAGG------------TTAGGAGGAGGT--GGTT-TCTGCC--------------AC-TTTA--CTTGC--C----AGCGCAG-TGCAACAAGTAGCC-ATT--GCA-----GAACAAAATGTGCACTCACTTGAGCTGCCCTGCTG------C------ACTG----CTAACTGCAG-------------------------------------------GGGTA----------AACT--------------------------------------------CA-C---CTGA--AT-T----G---AG------------------T---GAA-TG------------------------------------------------------GG---------------------AATGGGCCTTTGAGAGGTGCCTTTGGGCCAGGCC-AGAAGCGAGCTAATCG-GCCCACGCTT-GGCGTTCCT-----GCCAGCTCA--CACCGSizeHit CountTotal NormTotal
No Reads
droEug1
TCCCGAATTGCCCACGATGCCCTAAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTA--GATA---ATGCCCGCTGG---T-GCTGTC--------GGTGTTG---GAG-----------------------GT---GGTGTTTGCC--------------AC-TTTA--CTTGC--T---------AG-TGCAACAAGTAGCC-ATT--GCA-----GAACAAAATGTGCACTCACTTGAGCTGCCCTGC--TTGCTGC------ACTG---------------------------------------------------------GGGTA----------AACT--------------------------------------------CA-C---CTGA--AC-CA-CTG---AG-------------TTCCATAGAGGG-GGGGAGTAC-------------------------------------GGGTATG-----------------------------AGGC---AAAGAGCTGCCTTCGGGCCAGGCC-AGAAGCGAGCTAATCG-GCCCACGCTA-AGCGTTCCT-----GCCAGCTCA--CACCGSizeHit CountTotal NormTotal
No Reads
dm3
TCCCGGATTGCCCACGATGCACTAAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTA--GATA---ATACCCGGTGG------------------------TG---GAG-----------------------GT---GTT-GTTGCC--------------AC-TTTA--CTTGC--T-------GCAG-TGCAACAAGTAGCC-TTT--GCA-----GAACAAAATGTGCACTCACTTGAGCTGCCCTGCGGCTGC---TCCCGCACTC---------------------------------------------------------GGGTA----------AACT--------------------------------------------CA-C---CTGA--AC-CAACT--------------------TAAAT---GAG--G------------------------------------------------------GG---------------------AATGGGC---TAAGAGTTGCCTCTGGGCCAGGCC-AGAAGCGAGCTAATCG-GCCCACGCTT-AGCGTTCCT-----GCCAGCTTA--CACCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................AAGCGGCCTAAAGCAGTTAACCACTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................TGC--T-------GCAG-TGCAACAAGTAGCC-TTT--GCA-----GA...........................................................................................................................................................................................................................................................................................................................................................................................................3012.0020000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GGATTGCCCACGATGCACTAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCC-AGAAGCGAGCTAATCG-.........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................TA--GATA---ATACCCGGTGG------------------------TG---GAG-----------------------GT---GT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------TAAAT---GAG--G------------------------------------------------------GG---------------------AATGGGC---TA.................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................TAAAGCAGTTAACCACTCTGTAAGTA--GAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................TGTAAGTA--GATA---ATACCCGGTGG------------------------TG---GA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................CACTCTGTAAGTA--GATA---ATACCCGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TGCACTCACTTGAGCTGCCCTGCGGCT........................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................T--GCA-----GAACAAAATGTGCACT.............................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................TGTGCACTCACTTGAGCTGCCCTGCGGC.........................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............ACGATGCACTAAGCGGCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AAGCGGCCTAAAGCAGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTCTGGGCCAGGCC-AGAAGCGAGC................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GATGCACTAAGCGGCCTAAAGCAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................T--GCA-----GAACAAAATGTGCACTCACTTGAGC....................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................T---GAG--G------------------------------------------------------GG---------------------AATGGGC---TAAGAGTTGCC........................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..................................................GTAAGTA--GATA---ATACCCGGTGG------------------------TG---GA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................T-GTTGCC--------------AC-TTTA--CTTGC--T-------GCAG-T........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TGA--AC-CAACT--------------------TAAAT---GAG--G------------------------------------------------------GG---------------------AATGGGC---...................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TCCCGAATTGCCCACGATGCACTAAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTA--GATA---ATACCCGGTGG------------------------TG---GAG-----------------------GT---GTT-GTTGCC--------------AC-TTTA--CTTGC--T-------GCAG-TGCAACAAGTAGCC-TTT--GCA-----GAACAAAATGTGCACTCACTTGAGCTGCCCTGCGGCTGC---TCCCGCACTC---------------------------------------------------------GGGTA----------AACT--------------------------------------------CA-C---CTGA--AC-CAACT--------------------TAAAT---GAG--G------------------------------------------------------GG---------------------AATGGGC---TAACAGTTGCCTCTGGGCCAGGCC-AGAAGCGAGCTAATCG-GCCCACGCTT-AGCGTTCCT-----GCCAGCTTA--CACCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............CGATGCACTAAGCGGCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
..................................................................................................................................................................................................................GCA-----GAACAAAATGTGCACT.............................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
droSec2
TCCCGAATTGCCCACGATGCACTAAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTA--GATA---ATACCCGGTGG------------------------TG---GAG-----------------------GT---GTT-GTTGCC--------------AC-TTTA--CT-------------GCAG-TGCAACAAGTAGCC-TTT--GCA-----GAACAAAATGTGCACTCACTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TCCCGGATTGCCCACGATGCACTAAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTA--GATA---ATACCCGCTGG------------------------TG---GAG-----------------------GT---GTT-GTTGCC--------------AC-TTTA--CTGGC--A-------GCAG-TGCAACAAGTAGCC-TTT--GCA-----AAACAAAATGTGCACTCACTTGAGCTGCCCTGCGGCTGC---TCCCGCACTC---------------------------------------------------------GACTT----------CACT--------------------------------------------CA-C---CTGA--AC-CACCT--------------------TAAAT---GAG--G------------------------------------------------------GG---------------------AATGGGC---TAAGAGGTGCCTCTGGGCCAGGCC-AGAAGCAAGCTAATCG-GCCCACGCTT-AGCGTTCCT-----GCCAGCTTG--CACCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................AAGCGGCCTAAAGCAGTTAACCACTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCCTCTGGGCCAGGCC-AGAAGCAA..................................................2711.00100100000000
droEre2
TCCCGGATTGCCCACGATGCACTAAGCGGCCTAAAGCAGTTAACCACTCTGTAAGTA--GATA---ATACCCGCTGG------------------------TG---GAG-----------------------GT---GTT-GTTGCC--------------AC-TTTA--CTTGC--T-------GCAG-TGCAACAAGTAGCC-TTT--GCA-----GAACAAAATGTGCACTCACTTGAGCTGCCCTGCGGCTGC---TTCCGCACTC---------------------------------------------------------ACATA----------AACT--------------------------------------------CA-CCGACTGA--AC-CGACT--------------------TAAAT---GAGGGG------------------------------------------------------GG---------------------AGTGGGC---TAAGAGGTGCCCCTGGGCCAGGCC-AGAAGCGAGCTAATCG-GCCCACGCTT-AGCGTTCCT-----GCCAGCTTA--CACCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................GACT--------------------TAAAT---GAGGGG------------------------------------------------------GG---------------------AGT..........................................................................................2011.0010000010
..................GCACTAAGCGGCCTAAAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010

Generated: 05/16/2015 at 08:54 PM