dvi_5177

Name	Class	Family	Strand
Helitron-1N1_DVir	RC	Helitron	+

Species	Coordinate	ID	Alignment
droVir3	scaffold_12875:4355342-4355592 -	dvi_5177	CGGACATGGCTAGATCGACTCGGCTATTGGTGCTGTTCAAGAATATATA--TACTTTATGGGGTCGGA-------------GATGCTTCCTTCTGCTCCCTCCTGTTAC------ATACA--TTTGGATTTTGCACAAATACAATATACCCTTATACCCA------------TACC--------ATTATACCCA-------------TTATA-------------------------------------------------CCAGG---TTGTCA----ATAATGCTATT------------------------------------------------------------------------------GCTTCAATC--ATTT-------TCGT-TGCCA---------------GGTGGACATTGA----CAAG--CTGGAC-TACAGC---------CTCTAT----TTGCCGCT-GTTCTTTGA
droMoj3	scaffold_6654:182078-182279 +		CGGGCAGGGCTAAATCGACTCAGCTCGTCGCCCTGATCAAGAATATATA--TACTTTGTGGGGTCTGC-------------CAAGCCTCCTTCTGC------CTGTTAC------ATACT--TTT-A-------ACAAAACCATTATACCCTGATTTCCCATTTTCAATGGGTTCA-------GGGTATAAAAATGTGTGGCTTTAATAAAATTGGTTT-------------------ATATGT----TTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACTTTGT----CAA------------------------------------------------GGTGG
droGri2	scaffold_14624:388138-388320 +		CGGACATGTCTATATCGACTCGGCTGTTGACCCTGTTCAAGAATATACA--TAACTTATGGGGTCGGA-------------GATCCTTCCTTCTGC------CTGCTAC------ATACA--TTTGC-------ACAAAACCATTATACCCTTTTTCCCA-TTTTTAATGGGTTCA-------GGGTACAAAAA-------------A---------------------------------------------------------------------------TTCTATGG------------------------------------------------------------------------------CGACTT----------TCAC----------------------------------------------------------------------TTATGT----TTCTAA----------AT
droWil2	scf2_1100000004822:758090-758350 -		AGGACACGTCTAGATCGACTCGGCTGTTGATGCTGATCAAGAATATATT--TCCTTTATGGGTTCGGA-------------AAAGCTTCTTTCTGC------CTCTTAC------ATAAA--TTTTG-------GCGACTTTAATATGCCATTTCACCCT-------GTGGGTGCA-------TGGTTCATTTC-AT-----C----TTAAT-------------------AGATTTTTA----ATACCCAC---------TGCAG---ATTTCTATTTTGGCCACTGG---T---CATTGCCATAA-----------------------------------------------AGCTT------------------------------------------------------AT-GCGTCGATGG-----GAAT--ACA-------G--TTTCCCCAT------TTACCTGCCCTT-GCCCTTTGC
dp5	Unknown_group_180:32051-32222 -		---ACAGGGCTCAATCGACTCGGCTATTGATGCTGATCAAGAATATATA--TACTTTATGGGGTCGGA-------------AACGATTCCTTCTGG------ACGTTAC------ACTCA--TCCATTTTCACCACAAATCTAATATACCCCTATACTCA-TT----TTGTTTATC-------GGGTATAAAAATAT--------------------------------CG------------------------------------------CA----AAAGTGATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTT
droPer2	scaffold_828:7176-7366 +		CAGACATGGCTCAATCGACTCGGCTATTGATGCTGATCAAGAATATATA--TACTTTATGGGGTCGGA-------------AACGATTCCTTCTGG------ACGTTAC------ACACACATCCACTTTTACCACAAATCTAATATACCCCAATACTCA-TT----TTGAGTATC-------GGGTATAAAAA-------------TGT-------------------C--------------------------------------------------------AATAATT------------------------------------------------------------------------------------------------TTCGCTTC-------------------------TTT----------------------------------CGCCAT----TCCCAG----------GT
droAna3	scaffold_13099:362346-362555 -		CGAACATGGA----TAAACTCAGCTGTTGATGCTGATCAAAAATGTATG--TACTTTATGGGGTCGGA-------------AATGATTCCTTTACC------CTGATACTTGATGATACT--TTCAC-------ACGACTGAAATATACCATTGTACTCT-------ACGAGTAGC-------GGGTATAATTA-------------TG----------------------------------------------------------------------------CTATAATTCCATTCCTTC----CTTTCAAATGAA-----------------------------------------------------------------------------------------------T-ATATAAGTC----------GGAA-------CGGC---------CGGGAT----TTGTCG----------TT
droBip1	scf7180000396426:477963-478206 -		CGGACATGGCTATATCGACTCGGCTGTTAATGCTGATCAAGAATTTTTACATACCTTATGGTATAACTAATAACTAACTAAGATGATTTCTTCTCT------ATGCTAA------ATACA--TTTCC-------ACGAAGACAGTATACACTTTTACTCT-------TCGAGTACTGGTTTACTGGTATAATAAGAT--------------------------------TG--------------------------------TGAAATTTG-----------------------------------------------------------------TTGTTAAAGGTTGTTAAAGTTTGAAA--------------------------------------------------------------------------CTCGAC-TTCAGC---------CCCCATT-TCTTGTTTTT-GTTTTCTGC
droKik1	scf7180000302666:146469-146727 +		CGGACATGGCTAGATCGACTCGGCTGTTGATGCTGACCAAGAATATATA--TACTTTATAGGGTCGGA-------------AAGGTCTCCTTCACT------GCGTTGC------AAACT--TCTGA-------CTGAAATTATAATACCTTGCA--------------------A-------GGGTATAAAAATCTCATACATTCATAAAAT---AATATATTT------------TTA----CAATTCTCTTCATTAAATCCGTATTTTGTTA----TTAATACTATT------------------------------------------------------------------------------A---CAGGC--AATA-------CCCG-TCCCT---------------CTTAAACTTTGA----TATT--CTGAAC-TGGA----------------------------G-CTTATTTTT
droFic1	scf7180000454105:93568-93796 -		CGTACATACATATTTCGATTCAGATGGTGATGCTGATCAAGAATATATA--TACTTTATGGGGTCTAA-------------GGTGTCTCCTTCACT------GCGTTGC------AAACT--TCTGA-------CTGAAATTATAATACCCTTTTGCTCT-------GCAA------------GGGTATAAAAA-------------TTAG------------------CA--------------------------------------------------------CTGATTTTATGTTTTT----TTTTCAATTCAATTTTTTTTAAGCGCTTGA-TTTTG--------------------------AGGCTT----------CCAG----------------------------------------------------------------------TTCTGT----TTCTTTCT-GTTCTTTGA
droEle1	scf7180000490672:21499-21684 -		CGGACATGACAAGATCGACTCGGCTATTGATCCTGATCAAACAAATATA--TACATTATATGGTCGGA-------------AACGCTTCCTTCTAC------CTGTTAA------ATACT--TTTCA-------ACTAATA---------------------------CGAGAAAC-------GATTATAATTA-------------TA---------------T----------TCTTT----AAATCA----------------------TCG----ATAAATCTCAA------------------------------------------------------------------------------ATTTAAT----------T---TACTTTTA-------------------------T----------------------------------------------TTAGGAAT-ACACACTGA
droRho1	scf7180000766632:20375-20628 -		CGGACATGGCTAGATCGACTCGGCTAGTGATCCTGAACAAGAATATATA--TACTTTATAGGGTCGGA-------------AACGCTTCCTTCTAC------CTATTAC------ATACT--TTTGC-------ACGAATACAATATACCCTTTTACTCT-------ACGAGTAAC-------GGGTATAAATA-------------TG--------------GTTATCCTCG--------------------------------------------------------------------------------------------------------AATTTCAA-----------------CTGT---GTTTAATCAA--TCTT----TTCTT-TCCTCACAGCTTTCTTGTCCGAT-TGAATTGAA---CAAT--CTAGTATGCAG--CCTTTT----------------CAGCC-TTCGTTTTT
droBia1	scf7180000301211:3474-3665 +		CGGACATGGCTAGATCGACTCGGC--------------AATAGTATATA--GACTTTAAGCGGTCGGA-------------AACGCTTCCTTCTAC------CTGGTAC------ATACT--TTCTG-------ACGAATCCTGTGTACCCTTTTACTCT-------ATAACCATT---------------------------------GAA-------------------------------------------------CCATA-ATTTTTAA----ACGGTGGTATT--------------------TCGACAAATACCTTTCTAACGACGTAA--------------------------------------------------------------------------------------------AG----AACAAGCC-TGTA----------------------------------GCTTC
droTak1	scf7180000415159:181206-181442 -		CGGACATGGCTAGATCGACTCGGCTAGTGACCCTGATCAAGAAAATATA--TACTTTATGGGGTCGGA-------------ATCGCTTCCTTCTAG------CTGTTAC------ATACT--TTTGC-------ACGAATACAATATATCCTTTTACTCT-------ACGAGTAAC-------GGGTATAAAAATAT-----------G-----------TTAATC----------------------------------------------------------------ATT---TTCCGAAATACTTAT---------T-------------GG-ATTTTAAAAG---------------GTAAAAAATAAAAAACTTTAT-------TAAA-AGCTGG------------------------------------------------------------CTAT----TTGTAGCC-ATTTTTAAA
droEug1	scf7180000409531:6265-6491 +		CGGACATGGCTCAATCGACTTCGCAATTGATCCTGATCAAGAATATATA--TACTTTACTGGGTCGAA-------------AACGCTTCCTTCAAT------CTGTTAC------AAACT--TTTCA-------ACGAATCCAGTATACCCCTTTACTCT-------ACGAGTAAC-------GGGTATAATAA-------------GG---------------T----------TC---------------------------------------------------------------ACA----CTA-------------------------------TCAA-----------------C-CTTAACTTCAATCAT--T-------TTGTTTTC-------------------------CTTAAAAAT----TGACACAC-AGAT--AAATTATAA------ACATTATTAG---------TTG
dm3	chrX:1038896-1039160 -		CGGACATGGCTAGATCGACTCGGCTATTGATCATCAACAAGAATATATA--TATTTTACATAGTCGGA-------------AAGGCTTCCTTCTGC------CTGTTAC------ATCGT--TTTCA-------ACGAACCTAGTATACCCTCTTACAAT-------GCGAGTAAG-------GGGTATATATA-------------TGAAAC----GTGTTTGTTA-CCTCG--------------------------------------------------------------------------------------------------------ATTTTGAA-----------------CTCATAACTGCAATGCTATTT-------TCGT-TGCCGCCA----------CT-GTGTGCATGGAATAT----CGCAGGGC-AGAG--GCGTCTAAC------CCAGTTGTCGTT-GTTGTTTGT
droSim2	x:927742-928006 -		CGGAAATGGCTAGATCGACTCAGCTATTGATCCTCATCAAGAATATATA--AACGTTATATAGTCGGA-------------GATGCTTCCTTCTGC------CTGTTAC------ATCGT--TTTCA-------ACTAATTTAGTATACTCTT-TACTCT-------ACGCATAAC-------GGGTATATATA-------------TGAAAC---AGTGTTTGTTA-CCTCG--------------------------------------------------------------------------------------------------------ATTTTGAA-----------------CTCATAACTGCAATGCTATTT-------TCGT-TGCCGCCA----------CT-GTGTGCATGGAAAAT----GGCAGGGC-AGAG--GCGTCTAAC------CCAGTTGTCGTT-GTTGTTTGT
droSec2	scaffold_10:867823-868078 -		CGGACATGGCTAGATCGACTCGGCTATTGATCCTCATCAAGAATATATA--AACGTTATATAGTCGGA-------------GACGCTTCCTTCTGC------CTGTTAC------ATCGT--TTTCA-------ACTAATCTAGTATACCCTTTTACTCT-------ACGAATAAC-------GGG-ATATATA-------------TGAAAC---AGTGTTTGTTA-CCTCG--------------------------------------------------------------------------------------------------------ATTTTGAA-----------------CTGATAACTGCAATGCTATTT-------TCGT-TGCCGCCA----------CT-GTGTGCATGGA--AT----GGCAGGGC-AGAG--GCGTCAAA-------------GTTGTT-GTTGTTTGT
droYak3	v2_chr2R_random_012:12000-12240 +		CGGACATGGCCAGATCGACTCGGCTACTGATCCTGATCAAGAATATATA--TACTTTATATGGTCGGA-------------AACGCTTCCTTCTTC------CTGTTAC------ATACT--TTTCA-------ACGAATCTAGTATACCCTTTTACTTT-------ACTC--------------------------------------AAATGTTTTT-------------------ATGTAT----CAAA---------TGAAG---TGTTCAACATAGAATATTAT---T---TTTAGGCATATTTAT---------C-------------G-------------------------------------------------------------GCCA---------------TTTG----TTGA----CAAT--TCATAT-TGCG---------AA------TTATTTGTCGTTAATTCTTCGA
droEre2	scaffold_4929:25474292-25474488 +		CGGACATGGCCAGCTCGACTCGGTTATTTAACCTAAACAAGAATATACA--TA---TATACCATAGGG-------------AACGCTTCCTTCTGC------CTGTTAC------AAACT--TTTCA-------ATGAATCTAGTATACCCTTTTACTCT-------ACGAGTAAC-------GGCTATAAAGG---------------CAAT---AG-------------------------------------------------------------AGAATGCTATAGTCAATTTTCCCA----CTA-----------------------------------------------------------------------------------------------------------TCAGC--------------------T-ACAC--GTTACTAA------------------------GCTAG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

CGGACATGGCTAGATCGACTCGGCTATTGGTGCTGTTCAAGAATATATA--TACTTTATGGGGTCGGA-------------GATGCTTCCTTCTGCTCCCTCCTGTTAC------ATACA--TTTGGATTTTGCACAAATACAATATACCCTTATACCCA------------TACC--------ATTATACCCA-------------TTATA-------------------------------------------------CCAGG---TTGTCA----ATAATGCTATT------------------------------------------------------------------------------GCTTCAATC--ATTT-------TCGT-TGCCA---------------GGTGGACATTGA----CAAG--CTGGAC-TACAGC---------CTCTAT----TTGCCGCT-GTTCTTTGA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................T-TGCCA---------------GGTGGACATTGA----CAAG--CTGG..............................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTGA----CAAG--CTGGAC-TACAGC---------CTCT........................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................TCGGA-------------GATGCTTCCTTCTGCTC.....................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................TACA--TTTGGATTTTGCACAA.............................................................................................................................................................................................................................................................................................................................................................	20	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................TGGGGTCGGA-------------GATGCTTCCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................TATA--TACTTTATGGGGTCGGA-------------GATG..................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TCAAGAATATATA--TACTTTATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................CAAGAATATATA--TACTTTATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GCTGTTCAAGAATATATA--TACT................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................TGCTGTTCAAGAATATATA--TAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................GTTCAAGAATATATA--TACTTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GCTAGATCGACTCGGCTATTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................TTTGGATTTTGCACAAATACAATA.....................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................TATGGGGTCGGA-------------GATGCTTCCT............................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CTAGATCGACTCGGCTATTGGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................TCAAGAATATATA--TACTTTATGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CGGGCAGGGCTAAATCGACTCAGCTCGTCGCCCTGATCAAGAATATATA--TACTTTGTGGGGTCTGC-------------CAAGCCTCCTTCTGC------CTGTTAC------ATACT--TTT-A-------ACAAAACCATTATACCCTGATTTCCCATTTTCAATGGGTTCA-------GGGTATAAAAATGTGTGGCTTTAATAAAATTGGTTT-------------------ATATGT----TTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACTTTGT----CAA------------------------------------------------GGTGG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................................ATA--TACTTTGTGGGGTCTGC-------------C.....................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	2.85	57	57	0	0	0	0	0
...............................................TA--TACTTTGTGGGGTCTGC-------------CAA...................................................................................................................................................................................................................................................................................................................................................................................................................	22	15	0.47	7	7	0	0	0	0	0
......................................................TTTGTGGGGTCTGC-------------CAAGCCTCCTT...........................................................................................................................................................................................................................................................................................................................................................................................................	25	11	0.45	5	1	1	0	0	3	0
......................................................TTTGTGGGGTCTGC-------------CAAGCCT...............................................................................................................................................................................................................................................................................................................................................................................................................	21	12	0.33	4	1	0	0	0	3	0
......................................................TTTGTGGGGTCTGC-------------CAAGCCTCC.............................................................................................................................................................................................................................................................................................................................................................................................................	23	12	0.25	3	2	0	0	0	1	0
......................................................TTTGTGGGGTCTGC-------------CAAGCCTC..............................................................................................................................................................................................................................................................................................................................................................................................................	22	12	0.25	3	1	0	0	0	2	0
......................................................TTTGTGGGGTCTGC-------------CAAGCCTCCT............................................................................................................................................................................................................................................................................................................................................................................................................	24	12	0.17	2	0	0	0	0	2	0
.........................................................................................................................................AAACCATTATACCCTGATTTC.........................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	3	0
................................................A--TACTTTGTGGGGTCTGC-------------CAA...................................................................................................................................................................................................................................................................................................................................................................................................................	21	15	0.13	2	2	0	0	0	0	0
......................................................TTTGTGGGGTCTGC-------------CAAGCCTCCTTC..........................................................................................................................................................................................................................................................................................................................................................................................................	26	9	0.11	1	1	0	0	0	0	0
......................................................TTTGTGGGGTCTGC-------------CAAGCCTCCTTCT.........................................................................................................................................................................................................................................................................................................................................................................................................	27	9	0.11	1	1	0	0	0	0	0
........................................................................................CCTTCTGC------CTGTTAC------ATACT--T............................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	2	0	0	0	0	0
..............................................................GTCTGC-------------CAAGCCTCCTTCTGC------CTGT.............................................................................................................................................................................................................................................................................................................................................................................................	25	10	0.10	1	1	0	0	0	0	0
............................................................GGGTCTGC-------------CAAGCCTCCTTCTGC------C................................................................................................................................................................................................................................................................................................................................................................................................	24	10	0.10	1	0	0	0	0	1	0
.................................................................TGC-------------CAAGCCTCCTTCTGC------CTG..............................................................................................................................................................................................................................................................................................................................................................................................	21	12	0.08	1	1	0	0	0	0	0
................................................A--TACTTTGTGGGGTCTGC-------------CAAGCC................................................................................................................................................................................................................................................................................................................................................................................................................	24	12	0.08	1	0	0	0	0	1	0
...............................................TA--TACTTTGTGGGGTCTGC-------------CAAGCC................................................................................................................................................................................................................................................................................................................................................................................................................	25	12	0.08	1	0	0	0	0	1	0
......................................................TTTGTGGGGTCTGC-------------CAAGCC................................................................................................................................................................................................................................................................................................................................................................................................................	20	12	0.08	1	0	0	0	0	1	0
..............................................ATA--TACTTTGTGGGGTCTGC-------------CAAG..................................................................................................................................................................................................................................................................................................................................................................................................................	24	13	0.08	1	1	0	0	0	0	0
...............................................................TCTGC-------------CAAGCCTCCTTCTGC------C................................................................................................................................................................................................................................................................................................................................................................................................	21	13	0.08	1	1	0	0	0	0	0
.......................................................TTGTGGGGTCTGC-------------CAAGCCTC..............................................................................................................................................................................................................................................................................................................................................................................................................	21	13	0.08	1	1	0	0	0	0	0
.......................................................TTGTGGGGTCTGC-------------CAAGCCTCCT............................................................................................................................................................................................................................................................................................................................................................................................................	23	13	0.08	1	1	0	0	0	0	0
.....................................................CTTTGTGGGGTCTGC-------------CAAGCCTCCTA...........................................................................................................................................................................................................................................................................................................................................................................................................	26	18	0.06	1	1	0	0	0	0	0
............AATCGACTCAGCTCGTCGCCCTGATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0
...................................................................................................................................................................TTCAATGGGTTCA-------GGGTATAAAAAT....................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................................TCAATGGGTTCA-------GGGTATAAAAAT....................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
..........................................................................................................TAC------ATACT--TTT-A-------ACAAAACCATTATACCC................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	0	0	0	1	0

droGri2

CGGACATGTCTATATCGACTCGGCTGTTGACCCTGTTCAAGAATATACA--TAACTTATGGGGTCGGA-------------GATCCTTCCTTCTGC------CTGCTAC------ATACA--TTTGC-------ACAAAACCATTATACCCTTTTTCCCA-TTTTTAATGGGTTCA-------GGGTACAAAAA-------------A---------------------------------------------------------------------------TTCTATGG------------------------------------------------------------------------------CGACTT----------TCAC----------------------------------------------------------------------TTATGT----TTCTAA----------AT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

AGGACACGTCTAGATCGACTCGGCTGTTGATGCTGATCAAGAATATATT--TCCTTTATGGGTTCGGA-------------AAAGCTTCTTTCTGC------CTCTTAC------ATAAA--TTTTG-------GCGACTTTAATATGCCATTTCACCCT-------GTGGGTGCA-------TGGTTCATTTC-AT-----C----TTAAT-------------------AGATTTTTA----ATACCCAC---------TGCAG---ATTTCTATTTTGGCCACTGG---T---CATTGCCATAA-----------------------------------------------AGCTT------------------------------------------------------AT-GCGTCGATGG-----GAAT--ACA-------G--TTTCCCCAT------TTACCTGCCCTT-GCCCTTTGC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............................TGCTGATCAAGAATATATT--T...................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
..........TAGATCGACTCGGCTGTTGATGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
............................GATGCTGATCAAGAATATAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0

dp5

---ACAGGGCTCAATCGACTCGGCTATTGATGCTGATCAAGAATATATA--TACTTTATGGGGTCGGA-------------AACGATTCCTTCTGG------ACGTTAC------ACTCA--TCCATTTTCACCACAAATCTAATATACCCCTATACTCA-TT----TTGTTTATC-------GGGTATAAAAATAT--------------------------------CG------------------------------------------CA----AAAGTGATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................................................................................ATTCCTTCTGG------ACGTTAC------ACT.................................................................................................................................................................................................................................................................................................................................................................................	21	4	0.50	2	0	2	0	0	0	0	0	0	0	0
..................................GATCAAGAATATATA--TACTTTATGGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.35	7	0	0	0	0	0	0	0	7	0	0
......................................................................................TTCCTTCTGG------ACGTTAC------ACTCA--TCC..........................................................................................................................................................................................................................................................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
................................................................CGGA-------------AACGATTCCTTCTGG------ACGTTAC------ACT.................................................................................................................................................................................................................................................................................................................................................................................	29	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................TTAC------ACTCA--TCCATTTTCACC.................................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................TTCTGG------ACGTTAC------ACTCA--TCC..........................................................................................................................................................................................................................................................................................................................................................................	21	4	0.25	1	1	0	0	0	0	0	0	0	0	0
....................................................ACTTTATGGGGTCGGA-------------AAC...................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.25	5	0	0	0	0	0	0	0	0	5	0
.................................................................GGA-------------AACGATTCCTTCTGG------ACGTTA...........................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...................................ATCAAGAATATATA--TACTTTATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
....CAGGGCTCAATCGACTCGGCTAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................TTCACCACAAATCTAATATACCCCT..............................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	2	0
.............ATCGACTCGGCTATTGATGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0
...............................................TA--TACTTTATGGGGTCGGA-------------AACGAT................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................CAAGAATATATA--TACTTTATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................ATA--TACTTTATGGGGTCGGA-------------AA....................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0
...................................................TACTTTATGGGGTCGGA-------------AACGATTCCT............................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................TCACCACAAATCTAATATACCCCTATAC..........................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..............................................................GTCGGA-------------AACGATTCCTTCTGG------ACGTTA...........................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................CTGATCAAGAATATATA--TA..................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................CACCACAAATCTAATATACCC................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.......................................AGAATATATA--TACTTTATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0	0	0	0
..........................................ATATATA--TACTTTATGGGGTCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	1	0

droPer2

CAGACATGGCTCAATCGACTCGGCTATTGATGCTGATCAAGAATATATA--TACTTTATGGGGTCGGA-------------AACGATTCCTTCTGG------ACGTTAC------ACACACATCCACTTTTACCACAAATCTAATATACCCCAATACTCA-TT----TTGAGTATC-------GGGTATAAAAA-------------TGT-------------------C--------------------------------------------------------AATAATT------------------------------------------------------------------------------------------------TTCGCTTC-------------------------TTT----------------------------------CGCCAT----TCCCAG----------GT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..............................TGCTGATCAAGAATATATA--TACTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	1.05	21	0	0	21	0	0	0
......................................................TTTATGGGGTCGGA-------------AACGATT...............................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
........................................................TATGGGGTCGGA-------------AACGATTCCTTCTGG------.................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
..............................TGCTGATCAAGAATATATA--TACT................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0	0

droAna3

CGAACATGGA----TAAACTCAGCTGTTGATGCTGATCAAAAATGTATG--TACTTTATGGGGTCGGA-------------AATGATTCCTTTACC------CTGATACTTGATGATACT--TTCAC-------ACGACTGAAATATACCATTGTACTCT-------ACGAGTAGC-------GGGTATAATTA-------------TG----------------------------------------------------------------------------CTATAATTCCATTCCTTC----CTTTCAAATGAA-----------------------------------------------------------------------------------------------T-ATATAAGTC----------GGAA-------CGGC---------CGGGAT----TTGTCG----------TT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................................................ATGATTCCTTTACC------CTGATAC..........................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTC----------GGAA-------CGGC---------CGGGAT----TT................	21	3	0.67	2	2	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTC----------GGAA-------CGGC---------CGGGAT----T.................	21	20	0.45	9	9	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTC----------GGAA-------CGGC---------CGGGAT----TT................	22	3	0.33	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGTC----------GGAA-------CGGC---------CGGGAT----TT................	23	3	0.33	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGTC----------GGAA-------CGGC---------CGGGAT----T.................	22	20	0.30	6	6	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTC----------GGAA-------CGGC---------CGGGAT----TTT...............	23	5	0.20	1	1	0	0	0	0	0

droBip1

CGGACATGGCTATATCGACTCGGCTGTTAATGCTGATCAAGAATTTTTACATACCTTATGGTATAACTAATAACTAACTAAGATGATTTCTTCTCT------ATGCTAA------ATACA--TTTCC-------ACGAAGACAGTATACACTTTTACTCT-------TCGAGTACTGGTTTACTGGTATAATAAGAT--------------------------------TG--------------------------------TGAAATTTG-----------------------------------------------------------------TTGTTAAAGGTTGTTAAAGTTTGAAA--------------------------------------------------------------------------CTCGAC-TTCAGC---------CCCCATT-TCTTGTTTTT-GTTTTCTGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CGGACATGGCTAGATCGACTCGGCTGTTGATGCTGACCAAGAATATATA--TACTTTATAGGGTCGGA-------------AAGGTCTCCTTCACT------GCGTTGC------AAACT--TCTGA-------CTGAAATTATAATACCTTGCA--------------------A-------GGGTATAAAAATCTCATACATTCATAAAAT---AATATATTT------------TTA----CAATTCTCTTCATTAAATCCGTATTTTGTTA----TTAATACTATT------------------------------------------------------------------------------A---CAGGC--AATA-------CCCG-TCCCT---------------CTTAAACTTTGA----TATT--CTGAAC-TGGA----------------------------G-CTTATTTTT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CGTACATACATATTTCGATTCAGATGGTGATGCTGATCAAGAATATATA--TACTTTATGGGGTCTAA-------------GGTGTCTCCTTCACT------GCGTTGC------AAACT--TCTGA-------CTGAAATTATAATACCCTTTTGCTCT-------GCAA------------GGGTATAAAAA-------------TTAG------------------CA--------------------------------------------------------CTGATTTTATGTTTTT----TTTTCAATTCAATTTTTTTTAAGCGCTTGA-TTTTG--------------------------AGGCTT----------CCAG----------------------------------------------------------------------TTCTGT----TTCTTTCT-GTTCTTTGA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CGGACATGACAAGATCGACTCGGCTATTGATCCTGATCAAACAAATATA--TACATTATATGGTCGGA-------------AACGCTTCCTTCTAC------CTGTTAA------ATACT--TTTCA-------ACTAATA---------------------------CGAGAAAC-------GATTATAATTA-------------TA---------------T----------TCTTT----AAATCA----------------------TCG----ATAAATCTCAA------------------------------------------------------------------------------ATTTAAT----------T---TACTTTTA-------------------------T----------------------------------------------TTAGGAAT-ACACACTGA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CGGACATGGCTAGATCGACTCGGCTAGTGATCCTGAACAAGAATATATA--TACTTTATAGGGTCGGA-------------AACGCTTCCTTCTAC------CTATTAC------ATACT--TTTGC-------ACGAATACAATATACCCTTTTACTCT-------ACGAGTAAC-------GGGTATAAATA-------------TG--------------GTTATCCTCG--------------------------------------------------------------------------------------------------------AATTTCAA-----------------CTGT---GTTTAATCAA--TCTT----TTCTT-TCCTCACAGCTTTCTTGTCCGAT-TGAATTGAA---CAAT--CTAGTATGCAG--CCTTTT----------------CAGCC-TTCGTTTTT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CGGACATGGCTAGATCGACTCGGC--------------AATAGTATATA--GACTTTAAGCGGTCGGA-------------AACGCTTCCTTCTAC------CTGGTAC------ATACT--TTCTG-------ACGAATCCTGTGTACCCTTTTACTCT-------ATAACCATT---------------------------------GAA-------------------------------------------------CCATA-ATTTTTAA----ACGGTGGTATT--------------------TCGACAAATACCTTTCTAACGACGTAA--------------------------------------------------------------------------------------------AG----AACAAGCC-TGTA----------------------------------GCTTC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CGGACATGGCTAGATCGACTCGGCTAGTGACCCTGATCAAGAAAATATA--TACTTTATGGGGTCGGA-------------ATCGCTTCCTTCTAG------CTGTTAC------ATACT--TTTGC-------ACGAATACAATATATCCTTTTACTCT-------ACGAGTAAC-------GGGTATAAAAATAT-----------G-----------TTAATC----------------------------------------------------------------ATT---TTCCGAAATACTTAT---------T-------------GG-ATTTTAAAAG---------------GTAAAAAATAAAAAACTTTAT-------TAAA-AGCTGG------------------------------------------------------------CTAT----TTGTAGCC-ATTTTTAAA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CGGACATGGCTCAATCGACTTCGCAATTGATCCTGATCAAGAATATATA--TACTTTACTGGGTCGAA-------------AACGCTTCCTTCAAT------CTGTTAC------AAACT--TTTCA-------ACGAATCCAGTATACCCCTTTACTCT-------ACGAGTAAC-------GGGTATAATAA-------------GG---------------T----------TC---------------------------------------------------------------ACA----CTA-------------------------------TCAA-----------------C-CTTAACTTCAATCAT--T-------TTGTTTTC-------------------------CTTAAAAAT----TGACACAC-AGAT--AAATTATAA------ACATTATTAG---------TTG	Size	Hit Count	Total Norm	Total
No Reads

dm3

CGGACATGGCTAGATCGACTCGGCTATTGATCATCAACAAGAATATATA--TATTTTACATAGTCGGA-------------AAGGCTTCCTTCTGC------CTGTTAC------ATCGT--TTTCA-------ACGAACCTAGTATACCCTCTTACAAT-------GCGAGTAAG-------GGGTATATATA-------------TGAAAC----GTGTTTGTTA-CCTCG--------------------------------------------------------------------------------------------------------ATTTTGAA-----------------CTCATAACTGCAATGCTATTT-------TCGT-TGCCGCCA----------CT-GTGTGCATGGAATAT----CGCAGGGC-AGAG--GCGTCTAAC------CCAGTTGTCGTT-GTTGTTTGT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................................................................................................................TTTCA-------ACGAACCTAGTATACCCTCTTA...........................................................................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................TTTACATAGTCGGA-------------AAGGCTTCCTTC..........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................T--TTTCA-------ACGAACCTAGTATACCCTCT.............................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GC-AGAG--GCGTCTAAC------CCAGTTGTCG............	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................TTTCA-------ACGAACCTAGTATACCCTCT.............................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................T--TTTCA-------ACGAACCTAGTATACCCT...............................................................................................................................................................................................................................................................................................................................................	24	4	1.75	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAC------CCAGTTGTCGTT-GTTG.....	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................C-AGAG--GCGTCTAAC------CCAGTTGTC.............	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................TTACATAGTCGGA-------------AAGGCTTCCTTC..........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAC------CCAGTTGTCGTT-GTTGTTTGT	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAC------CCAGTTGTCGTT-GTTGTTT..	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................CCGCCA----------CT-GTGTGCATGG.............................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................T-GTGTGCATGGAATAT----CGCAGG..............................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TATTGATCATCAACAAGAATATATA--....................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........AGATCGACTCGGCTATTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GC-AGAG--GCGTCTAAC------CCAGTTGTCGTT-.........	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................TAAG-------GGGTATATATA-------------TGAAAC----GTG...........................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................AAC----GTGTTTGTTA-CCTCG--------------------------------------------------------------------------------------------------------ATTTTGAA-----------------C............................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AA-----------------CTCATAACTGCAATGCTAT..........................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................CTATTGATCATCAACAAGAATATATA--....................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAC------CCAGTTGTCGTT-GTTGTTT..	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTAAC------CCAGTTGTCGTT-GTTGT....	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTTGTTA-CCTCG--------------------------------------------------------------------------------------------------------ATTTTGAA-----------------CTCATA.......................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................CGCCA----------CT-GTGTGCATGGAATAT----CGCAGG..............................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................CTTCCTTCTGC------CTGTTAC------ATC.................................................................................................................................................................................................................................................................................................................................................................................	21	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................TAGTCGGA-------------AAGGCTTCCTTCTGC------CTG..............................................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................TAGTCGGA-------------AAGGCTTCCTTCTGC------C................................................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................TTTCA-------ACGAACCTAGTATACCCTC..............................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................TAGTCGGA-------------AAGGCTTCCTTCTGC------CTGT.............................................................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................TAGTCGGA-------------AAGGCTTCCTTCTGC------.................................................................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................T--TTTCA-------ACGAACCTAGTATACC.................................................................................................................................................................................................................................................................................................................................................	22	5	0.40	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................AAGGCTTCCTTCTGC------CTGTTAC------A...................................................................................................................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................TCGGA-------------AAGGCTTCCTTCTGC------CTGTT............................................................................................................................................................................................................................................................................................................................................................................................	25	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................A-------------AAGGCTTCCTTCTGC------CTGTTAC------A...................................................................................................................................................................................................................................................................................................................................................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................AAGGCTTCCTTCTGC------CTGTTA...........................................................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................TCGGA-------------AAGGCTTCCTTCTGC------C................................................................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................TTTCA-------ACGAACCTAGTATACC.................................................................................................................................................................................................................................................................................................................................................	21	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...ACATGGCTAGATCGACTCGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
....CATGGCTAGATCGACTCGGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................TTTCA-------ACGAACCTAGTATAC..................................................................................................................................................................................................................................................................................................................................................	20	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............ATCGACTCGGCTATTGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................TAGTCGGA-------------AAGGCTTCCTTCTGC------CATC.............................................................................................................................................................................................................................................................................................................................................................................................	27	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TGGCTAGATCGACTCGGCTATTGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CTAGATCGACTCGGCTATTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GCTAGATCGACTCGGCTATTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..GACATGGCTAGATCGACTCGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CGGACATGGCTAGATCGACTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GCTAGATCGACTCGGCTATTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TGGCTAGATCGACTCGGCTATTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..GACATGGCTAGATCGACTCGGCTATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
......................................................................................TTCCTTCTGC------CTGTTAC------AT..................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........AGATCGACTCGGCTATTGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CGGAAATGGCTAGATCGACTCAGCTATTGATCCTCATCAAGAATATATA--AACGTTATATAGTCGGA-------------GATGCTTCCTTCTGC------CTGTTAC------ATCGT--TTTCA-------ACTAATTTAGTATACTCTT-TACTCT-------ACGCATAAC-------GGGTATATATA-------------TGAAAC---AGTGTTTGTTA-CCTCG--------------------------------------------------------------------------------------------------------ATTTTGAA-----------------CTCATAACTGCAATGCTATTT-------TCGT-TGCCGCCA----------CT-GTGTGCATGGAAAAT----GGCAGGGC-AGAG--GCGTCTAAC------CCAGTTGTCGTT-GTTGTTTGT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................GAATATATA--AACGTTATATAGTCGGA-------------......................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	32.00	32	0	0	0	0	0	0	0	9	0	3	0	0	9	11	0	0	0
........................................GAATATATA--AACGTTATATAGTCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	8.00	8	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TTTTGAA-----------------CTCATAACTGCAATGCTA...........................................................................................................	25	1	7.00	7	0	0	0	0	0	0	2	0	4	1	0	0	0	0	0	0	0
......................................................................................................CTGTTAC------ATCGT--TTTCA-------ACTAATC..........................................................................................................................................................................................................................................................................................................................................................	24	1	5.00	5	0	0	0	0	0	0	1	0	2	2	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................T-GTGTGCATGGAAAAT----GGCAGGGC-AGA........................................	27	1	5.00	5	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0
........................................GAATATATA--AACGTTATATAGTCGGA-------------G.....................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	5.00	5	0	0	0	0	0	0	0	1	0	0	0	0	4	0	0	0	0
......................................................................................................................................................................................................................................TCG--------------------------------------------------------------------------------------------------------ATTTTGAA-----------------CTCATAACTGCAATGC.............................................................................................................	27	1	4.00	4	0	0	0	0	0	0	1	1	1	1	0	0	0	0	0	0	0
............................................................................................................................................................................................TATATA-------------TGAAAC---AGTGTTTGTTA-CCTCG--------------------------------------------------------------------------------------------------------A.....................................................................................................................................................	29	1	4.00	4	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0
.............................................................................................TGC------CTGTTAC------ATCGT--TTTCA-------ACTAA............................................................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................CGCCA----------CT-GTGTGCATGGAAAAT----GGC.................................................	25	1	4.00	4	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TTTTGAA-----------------CTCATAACTGCAATGCTAT..........................................................................................................	26	1	4.00	4	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TGAAAC---AGTGTTTGTTA-CCTCG--------------------------------------------------------------------------------------------------------ATTT..................................................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
..........................................................................................................................................................................................................................TGTTTGTTA-CCTCG--------------------------------------------------------------------------------------------------------ATTTTGAA-----------------CTCATA.......................................................................................................................	28	1	4.00	4	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0
........................................GAATATATA--AACGTTATATAGTCGGA-------------GA....................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	3.00	3	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TTGTTA-CCTCG--------------------------------------------------------------------------------------------------------ATTTTGAA-----------------CTCAT........................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0
........................................GAATATATA--AACGTTATATAGTCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................TA-CCTCG--------------------------------------------------------------------------------------------------------ATTTTGAA-----------------CTCATAACTGC..................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TTTGAA-----------------CTCATAACTGCAATGCTAT..........................................................................................................	25	1	3.00	3	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TTTTGAA-----------------CTCATAACTGCAATGCTATT.........................................................................................................	27	1	3.00	3	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TTTGAA-----------------CTCATAACTGCAATGCTATT.........................................................................................................	26	1	3.00	3	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0
......................................AAGAATATATA--AACGTTATATAGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
............GATCGACTCAGCTATTGATCCTCATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAAAT----GGCAGGGC-AGAG--GCGTC................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TTTTGAA-----------------CTCATAACTGCAATGCT............................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0
................................................................................................................................................................................................TA-------------TGAAAC---AGTGTTTGTTA-CCTCG--------------------------------------------------------------------------------------------------------A.....................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
...........................................................................................TCTGC------CTGTTAC------ATCGT--TTTCA-------ACTAA............................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
...........................................TATATA--AACGTTATATAGTCGGA-------------GATGCT................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TGAAAC---AGTGTTTGTTA-CCT................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
........................................................................................................................................................................................................................AGTGTTTGTTA-CCTC...............................................................................................................................................................................................................................................................	15	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..............................................................................................................................................................................................................................TGTTA-CCTCG--------------------------------------------------------------------------------------------------------ATTTTGAA-----------------CTCAT........................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................TGTTTGTTA-CCTCG--------------------------------------------------------------------------------------------------------ATTTTGAA-----------------CTCAT........................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
.........................ATTGATCCTCATCAAGAATATATA--AACGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................	30	1	2.00	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................TATTT-------TCGT-TGCCGCCA----------CT-GTGTGCA................................................................	26	1	2.00	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................TCG--------------------------------------------------------------------------------------------------------ATTTTGAA-----------------CTCATAACTGCAATGCTA...........................................................................................................	29	1	2.00	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................TCATAACTGCAATGCTATTT-------TCGT-T...........................................................................................	25	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................TAAC-------GGGTATATATA-------------TGAAAC---AGTGTT.........................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................TGCTATTT-------TCGT-TGCCGCCA----------CT-GTGTGCA................................................................	29	1	2.00	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
..........................................................................................TTCTGC------CTGTTAC------ATCGT--TTTCA-------AC...............................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TA-CCTCG--------------------------------------------------------------------------------------------------------ATTTTGAA-----------------CTCATAACTGCAA................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................TAAC-------GGGTATATATA-------------TGAAAC---AGTG...........................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0
..........................................ATATATA--AACGTTATATAGTCGGA-------------G.....................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0
...............................................TA--AACGTTATATAGTCGGA-------------GATGCT................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................TTCTGC------CTGTTAC------ATCGT--TTTCA-------ACTAA............................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................TAAC-------GGGTATATATA-------------TGAAAC---AGTGT..........................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0
......................................................................................TTCCTTCTGC------CTGTTAC------ATCGT--TTTCA-------A................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................GTTTGTTA-CCTCG--------------------------------------------------------------------------------------------------------ATTTTGAA-----------------CTCA.........................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................ATTGATCCTCATCAAGAATATATA--AACGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TGAAAC---AGTGTTTGTTA-...................................................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................T----GGCAGGGC-AGAG--GCGTCTAAC------CCA...................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAAAT----GGCAGGGC-AGAG--GCGTCTAA.............................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TT-------TCGT-TGCCGCCA----------CT-GTGTGCATGGA............................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................AACGTTATATAGTCGGA-------------GATGCTTCCT............................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................ATATAGTCGGA-------------GATGCTTCCT............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................TGTTA-CCTCG--------------------------------------------------------------------------------------------------------ATTTTGAA-----------------CTCATAAC.....................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TGAA-----------------CTCATAACTGCAATGCTATTT-------T................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................CG--------------------------------------------------------------------------------------------------------ATTTTGAA-----------------CTCATAACTGCAATGCTA...........................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................CTGC------CTGTTAC------ATCGT--TTTCA-------ACTAA............................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......................................AAGAATATATA--AACGTTATATAGTCGGA-------------......................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TTTGAA-----------------CTCATAACTGCAATGCTA...........................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC------CCAGTTGTCGTT-GTTGTT...	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................T-GTGTGCATGGAAAAT----GGCA................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................TGCTTCCTTCTGC------CTGTTAC------ATCGT--.............................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................G--------------------------------------------------------------------------------------------------------ATTTTGAA-----------------CTCATAACTGCAATGCTA...........................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................CTCT-------ACGCATAAC-------GGGTATATATA-------------TGA.....................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................ATTTTGAA-----------------CTCATAACTGCAATGCTA...........................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.........................ATTGATCCTCATCAAGAATATATA--AA..................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......................................................................................TTCCTTCTGC------CTGTTAC------ATCGT--.............................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..............TCGACTCAGCTATTGATCCTCATCAAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GCCA----------CT-GTGTGCATGGAAAAT----GGC.................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................TATATATA-------------TGAAAC---AGTGTTTGTTA-CCT................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................G--------------------------------------------------------------------------------------------------------ATTTTGAA-----------------CTCATAACTGCAATGCT............................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TGAAAC---AGTGTTTGTTA-CCTCG--------------------------------------------------------------------------------------------------------......................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................TATA--AACGTTATATAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................TATA--AACGTTATATAGTCGGA-------------GATGC.................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................TA-------------TGAAAC---AGTGTTTGTTA-CCTCG--------------------------------------------------------------------------------------------------------AT....................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................CTATTT-------TCGT-TGCCGCCA----------CT-GTGTGCA................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAC------CCAGTTGTCGTT-GTTGTT...	22	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................TGCTATTT-------TCGT-TGCCGCCA----------CT-GTG....................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................CTGTTAC------ATCGT--TTTCA-------ACTAATTTAGTA.....................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................CGT-TGCCGCCA----------CT-GTGTGCATGGAAA..........................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TGAAAC---AGTGTTTGTTA-CCTCG--------------------------------------------------------------------------------------------------------ATT...................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGC-AGAG--GCGTCTAAC------CCAGTTGT..............	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................CGT-TGCCGCCA----------CT-GTGTGCATGGAA...........................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................TAGTCGGA-------------GATGCTTCCTTCTGC------.................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................TATATA--AACGTTATATAGTCGGA-------------G.....................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................CAAGAATATATA--AACGTTATATAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................GAATATATA--AACGTTATATAGTCGGA-------------T.....................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TT-------TCGT-TGCCGCCA----------CT-GTGTGCA................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TTGTTA-CCTCG--------------------------------------------------------------------------------------------------------ATTTTGAA-----------------CTCATAA......................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................C-------GGGTATATATA-------------TGAAAC---AGTGT..........................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................TATAGTCGGA-------------GATGCTTCCTTCTGC------.................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................TA--AACGTTATATAGTCGGA-------------GATGCTTC..............................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................TGCTATTT-------TCGT-TGCCGCCA----------CT-GT.....................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................TATA-------------TGAAAC---AGTGTTTGTTA-CCTCG--------------------------------------------------------------------------------------------------------A.....................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................TGTTAC------ATCGT--TTTCA-------AC...............................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TGAAAC---AGTGTTTGTTA-CCTCG--------------------------------------------------------------------------------------------------------ATTTTGAA-----------------C............................................................................................................................	31	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................TACTCT-------ACGCATAAC-------GGGT............................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............GATCGACTCAGCTATTGATCCTCATCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.GGAAATGGCTAGATCGACTCAGCTAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATGGAAAAT----GGCAGGGC-AGAG--G....................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATGGAAAAT----GGCAGGGC-AGA........................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................CTGTTAC------ATCGT--TTTCA-------ACTAATT..........................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GAA-----------------CTCATAACTGCAATGCTATTT-------T................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAC------CCAGTTGTCGTT-GTTGTTTGT	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................GCCGCCA----------CT-GTGTGCATGGAAA..........................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................ATATA-------------TGAAAC---AGTGTTTGTTA-CCTCG--------------------------------------------------------------------------------------------------------A.....................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................CTGC------CTGTTAC------ATCGT--TTTCA-------ACTAATC..........................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TTGAA-----------------CTCATAACTGCAATGCTATTT-------.................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................TATATAGTCGGA-------------GATGCTTCCTTCTA........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............GATCGACTCAGCTATTGATCCTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AGCTATTGATCCTCATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................AC---AGTGTTTGTTA-CCTCG--------------------------------------------------------------------------------------------------------ATTT..................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................TATA--AACGTTATATAGTCGGA-------------GATGCT................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGTCGTT-GTTGTTTGT	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................CTGTTAC------ATCGT--TTTCA-------ACTA.............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................G--------------------------------------------------------------------------------------------------------ATTTTGAA-----------------CTCATAACTGCAATGC.............................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TGAAAC---AGTGTTTGTT.....................................................................................................................................................................................................................................................................	16	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......TGGCTAGATCGACTCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	6	0.50	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
........................................GAATATATA--AACGTTATATAGTCGGA-------------A.....................................................................................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......TGGCTAGATCGACTCAGCTATTGATCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	6	0.33	2	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0
......TGGCTAGATCGACTCAGCTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	6	0.33	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......TGGCTAGATCGACTCAGCTATTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	6	0.17	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......TGGCTAGATCGACTCAGCTATTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	6	0.17	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........CTAGATCGACTCAGCTATTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......TGGCTAGATCGACTCAGCTATTGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	6	0.17	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........GCTAGATCGACTCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	16	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........CTAGATCGACTCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	15	8	0.13	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........CTAGATCGACTCAGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	16	8	0.13	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............GATCGACTCAGCTATTGATCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........TAGATCGACTCAGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	15	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......TGGCTAGATCGACTCAGCTATTGAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	11	0.09	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........AGATCGACTCAGCTAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	16	15	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

CGGACATGGCTAGATCGACTCGGCTATTGATCCTCATCAAGAATATATA--AACGTTATATAGTCGGA-------------GACGCTTCCTTCTGC------CTGTTAC------ATCGT--TTTCA-------ACTAATCTAGTATACCCTTTTACTCT-------ACGAATAAC-------GGG-ATATATA-------------TGAAAC---AGTGTTTGTTA-CCTCG--------------------------------------------------------------------------------------------------------ATTTTGAA-----------------CTGATAACTGCAATGCTATTT-------TCGT-TGCCGCCA----------CT-GTGTGCATGGA--AT----GGCAGGGC-AGAG--GCGTCAAA-------------GTTGTT-GTTGTTTGT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................................................................................................................................CT-------ACGAATAAC-------GGG-ATATAT......................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	1
....................................................................................................................................................................................................................C---AGTGTTTGTTA-CCTCG--------------------------------------------------------------------------------------------------------ATT...................................................................................................................................................	20	2	0.50	1	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TTTTGAA-----------------CTGATAACTGCAAT...............................................................................................................	21	2	0.50	1	1	0	0	0
......................................................................................TTCCTTCTGC------CTGTTAC------ATCGT--TTTC.........................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	1	0	0	0
...............................................................TCGGA-------------GACGCTTCCTTCTGC------C................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	1	0	0	0
..........................................................................................................................TTTCA-------ACTAATCTAGTATACCCTT..............................................................................................................................................................................................................................................................................................................................................	24	5	0.20	1	1	0	0	0
......................................................................................................................................................CTTTTACTCT-------ACGAATAAC-------GG..............................................................................................................................................................................................................................................................................................................	21	9	0.11	1	0	1	0	0
..GACATGGCTAGATCGACTCGGCTATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0
..GACATGGCTAGATCGACTCGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0
CGGACATGGCTAGATCGACTCGGCTAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0

droYak3

CGGACATGGCCAGATCGACTCGGCTACTGATCCTGATCAAGAATATATA--TACTTTATATGGTCGGA-------------AACGCTTCCTTCTTC------CTGTTAC------ATACT--TTTCA-------ACGAATCTAGTATACCCTTTTACTTT-------ACTC--------------------------------------AAATGTTTTT-------------------ATGTAT----CAAA---------TGAAG---TGTTCAACATAGAATATTAT---T---TTTAGGCATATTTAT---------C-------------G-------------------------------------------------------------GCCA---------------TTTG----TTGA----CAAT--TCATAT-TGCG---------AA------TTATTTGTCGTTAATTCTTCGA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................................................................................................................................................................................................................................................................TAT---T---TTTAGGCATATTTAT---------C-------------G-------------------------------------------------------------GCCA---------------TT......................................................................	27	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................TTCCTTCTTC------CTGTTAC------ATACT--TTT..........................................................................................................................................................................................................................................................................................................................................................................	25	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................TTCCTTCTTC------CTGTTAC------ATACT--T............................................................................................................................................................................................................................................................................................................................................................................	23	17	0.06	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................CTTCTTC------CTGTTAC------ATACT--TTT..........................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................CTTTATATGGTCGGA-------------AACGC.................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................TTTCA-------ACGAATCTAGTATAC..................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................TGTTAC------ATACT--TTTCA-------ACGAA............................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..............TCGACTCGGCTACTGATCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................CTTCTTC------CTGTTAC------ATACT--TTTCA-------AC...............................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................ACT--TTTCA-------ACGAATCTAGTATACCC................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.....ATGGCCAGATCGACTCGGCTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................TTC------CTGTTAC------ATACT--TTTCA-------ACGAATC..........................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
........GCCAGATCGACTCGGCTACTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

CGGACATGGCCAGCTCGACTCGGTTATTTAACCTAAACAAGAATATACA--TA---TATACCATAGGG-------------AACGCTTCCTTCTGC------CTGTTAC------AAACT--TTTCA-------ATGAATCTAGTATACCCTTTTACTCT-------ACGAGTAAC-------GGCTATAAAGG---------------CAAT---AG-------------------------------------------------------------AGAATGCTATAGTCAATTTTCCCA----CTA-----------------------------------------------------------------------------------------------------------TCAGC--------------------T-ACAC--GTTACTAA------------------------GCTAG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.............................................................................................................................................TAGTATACCCTTTTACTCT-------ACGAGT..........................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	1

dvi_5177

scaffold_12875:4355392-4355542 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CGGACATGGCTAGATCGACTCGGCTATTGGTGCTGTTCAAGAATATATATACTTTATGGGGTCGGAGATGCTTCCTTCTGCTCCCTCCTGTTACATACATTTGGATTTTGCACAAATACAATATACCCTTATACCCATACCATTATACCCATTATACCAGGTTGTCAATAATGCTATTGCTTCAATCATTTTCGTTGCCAGGTGGACATTGACAAGCTGGACTACAGCCTCTATTTGCCGCTGTTCTTTGA ***********************************************************..((((..((........))...))))...........................**************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060670 9_testes_total	SRR060678 9x140_testes_total	SRR060655 9x160_testes_total	SRR060681 Argx9_testes_total	M047 female body	SRR060679 140x9_testes_total	SRR060672 9x160_females_carcasses_total	SRR060683 160_testes_total	SRR060689 160x9_testes_total	SRR060680 9xArg_testes_total	V053 head	M061 embryo	SRR060677 Argx9_ovaries_total	SRR060682 9x140_0-2h_embryos_total	SRR060685 9xArg_0-2h_embryos_total	V116 male body
...............CGACTCGGCTATTCGTGCTGT.......................................................................................................................................................................................................................	21	1	5	4.80	24	1	7	8	4	0	0	0	1	1	0	0	0	0	1	1	0
..................................................................................................................................................................................................TTGCCAGGTGGACATTGACAAGCTGG...............................	26	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TTGACAAGCTGGACTACAGCCTCT...................	24	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.............................................................TCGGAGATGCTTCCTTCTGCTC........................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............TCGACTCGGCTATTCGTGCTGT.......................................................................................................................................................................................................................	22	1	5	1.00	5	1	2	1	0	0	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................TATACCCAGTTGTCAATAATGCTATTGC.......................................................................	28	2	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................TGGGGTCGGAGATGCTACCTTCTGCTC........................................................................................................................................................................	27	1	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................CCCAGACCATTATAGCCATGA.................................................................................................	21	3	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........AGATCGACTCGGCTATTGGTGATGT.......................................................................................................................................................................................................................	25	1	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................TACATTTGGATTTTGCACAA........................................................................................................................................	20	0	20	0.30	6	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0
........................TATTCGTGCTGTTCAAGAATAT.............................................................................................................................................................................................................	22	1	8	0.25	2	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................CGGGTTGTCTATAATGCT............................................................................	18	2	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................................................TGGGGTCGGAGATGCTTCCTTCTG...........................................................................................................................................................................	24	0	20	0.20	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............TCGACTCGGCTATTCGTCCTGT.......................................................................................................................................................................................................................	22	2	5	0.20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CGACTCGGCTATTCGTGCTGTT......................................................................................................................................................................................................................	22	1	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................GACTCGGCTATTCGTGCTGT.......................................................................................................................................................................................................................	20	1	5	0.20	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.............................................TATATACTTTATGGGGTCGGAGATG.....................................................................................................................................................................................	25	0	20	0.15	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0
........................TATTCGTGCTGTTCAAGAATA..............................................................................................................................................................................................................	21	1	8	0.13	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................TATTCGTGCTGTGCAAGAATA..............................................................................................................................................................................................................	21	2	9	0.11	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................TCAAGAATATATATACTTTATGG................................................................................................................................................................................................	23	0	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.....................................CAAGAATATATATACTTTATGG................................................................................................................................................................................................	22	0	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
..............................................................CGGAGATGCTTCCTTCTGCTCTCAA....................................................................................................................................................................	25	3	12	0.08	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................GCTGTTCAAGAATATATATACT......................................................................................................................................................................................................	22	0	14	0.07	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..............................TGCTGTTCAAGAATATATATAC.......................................................................................................................................................................................................	22	0	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................GTTCAAGAATATATATACTTT....................................................................................................................................................................................................	21	0	16	0.06	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...............CGACTCGGCTATTCGTGCTGTC......................................................................................................................................................................................................................	22	2	17	0.06	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GCTAGATCGACTCGGCTATTGGT............................................................................................................................................................................................................................	23	0	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................TTTGGATTTTGCACAAATACAATA................................................................................................................................	24	0	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................TATGGGGTCGGAGATGCTTCCT...............................................................................................................................................................................	22	0	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.........CTAGATCGACTCGGCTATTGGTGC..........................................................................................................................................................................................................................	24	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
....................................TCAAGAATATATATACTTTATGGGG..............................................................................................................................................................................................	25	0	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0

-6.4	-6.0	-5.8