ID:

dvi_5107

 Coordinate:

scaffold_12875:3296486-3296636 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.6 -11.2 -11.2

Flybase annnotation

exon [dvir_GLEANR_6746:2]; CDS [Dvir\GJ21386-cds]; intron [Dvir\GJ21386-in]

Repeatable elements

NameClassFamilyStrand
A-richLow_complexityLow_complexity+
mature
  1. scaffold_12723:269063-269079 +
  2. scaffold_12799:254127-254143 +
  3. scaffold_12855:2384930-2384946 +
  4. scaffold_12855:7652805-7652821 +
  5. dvi_5107  scaffold_12875:3296610-3296626 +
  6. scaffold_12875:11068798-11068814 +
  7. scaffold_12928:3949754-3949770 +
  8. scaffold_12932:314020-314036 +
  9. scaffold_12963:718148-718164 +
  10. scaffold_12963:3004513-3004529 +
  11. scaffold_12963:10121462-10121478 +
  12. scaffold_12963:14097990-14098006 +
  13. scaffold_12963:14407240-14407256 +
  14. scaffold_12970:1911838-1911854 +
  15. scaffold_12970:7748801-7748817 +
  16. scaffold_12970:11674558-11674574 +
  17. scaffold_13042:541480-541496 +
  18. scaffold_13047:4808129-4808145 +
  19. scaffold_13049:15107423-15107439 +
  20. scaffold_13049:19222728-19222744 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CTATCAGAACATTCCGCAGGACGTACAGAAGTTTGTGCCCAAGTACAAAGGTAAGATACCGACTATATTCCTCTTATTAACCACCCACAACGACTATCGATTCTATCGAAGCGCTTCATAAGCTATATATATTTCGTTTCGAATTAACTGCTCGTTCTATCATGCATTAAAAACAAAAAAAAAAAAACAAAAACAAAAAACAAAAACAAAATTCAATAAAAATAAAAAATAAAAAAACACAAAAAATGATA
**************************************************(((.((((.(((............................(((...)))......((((((((....(((.......)))....)))))))).........)))...)))).)))....................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 SRR060671
9x160_males_carcasses_total
 V047
embryo
 SRR060657
140_testes_total
 SRR060681
Argx9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 GSM1528803
follicle cells		 M028
head
 SRR060664
9_males_carcasses_total
 SRR060680
 9xArg_testes_total
 SRR060669
160x9_females_carcasses_total
 SRR060678
9x140_testes_total
...................GAAGTACAGATGTCTGTGCCCA.................................................................................................................................................................................................................. 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................ACAAAAAAAAAACAACAAAAACACAAAACAACAACA........................................... 36 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....AGAACATTCCGCAGGACGT................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................AAAAAAAAAAAACAAAAACAAAAAACAAACACAAAA........................................ 36 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................AAAAAAAAAAAACAAAAACAAAAAACAAAAACAAA......................................... 35 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................GGACGTACAGAAGTTTGTGCCCAA................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
CTATCAGAACATTCCGCCGGAC..................................................................................................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................AGGACGTACAGAAGTTTGT....................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................AAACAAAAACAAACAAACAAAAACCAAAAACAAAAA............................................. 36 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................AAAACAAAAAAAAAAAAACAAAAACAACACACAACA.............................................. 36 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AACAAAAAAAAAAACACAAACACAAAAAACAAAAAA............................................ 36 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................AAAAAACAAAAAAAAAAAAACAAACACAACAAACAA................................................ 36 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................AAAAAAAACAAACAAAAACAACAAACAAAAACACAA........................................ 36 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................TTGGTTTCGAATTAGGTGCTC.................................................................................................. 21 3 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................AACAAAAAAAAAACACAAAAACAAAAAACAAAAACA........................................... 36 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................AAAATAAAATATAAAAAACAAAAACAAAAAACAAAA.............................................. 36 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................AAAAAAAAAAAACAAAAACACAAAACAAAAAAAAAA........................................ 36 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................AAAAAAAATAAAAAACAAGAACAAAAAACAAAAACA........................................... 36 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................TATTCTTCTTAATAACCA........................................................................................................................................................................ 18 2 9 0.22 2 0 0 0 0 0 0 2 0 0 0 0 0
............................................................................................................................................................................ACAACAAAAAAAAAACACAAAAAAAAAACAAAAACA........................................... 36 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................AAAACAAAAAAAAAAAAAAAAAAACAAAAAACAAA............................................... 35 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................AAAAAAAAAAAAAAAAAACAAAAAACAAAAACAAAA........................................ 36 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................AAAAAAAAAAACAAAAACAAAAAAAAAAAACAAAA........................................ 35 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................GGAATATATTCCTCCTATT............................................................................................................................................................................. 19 3 20 0.15 3 0 0 0 0 0 0 3 0 0 0 0 0
..........................................................................................................................................................................AAAAAAAAAAAAAAAAACAAAAACAAAAAACAAAAA............................................. 36 1 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................AAAAAAAAAAAAAAAAACACAAACAAAAAACAAAAA............................................. 36 2 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................AAAAAAAAAAAAACAAA............................................................ 17 0 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0
...........................................................................................GACTATCGATCCTAT................................................................................................................................................. 15 1 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................AAAAAAAAAAAAAAAAACAAAAACACAAAACAAAAA............................................. 36 2 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................AAAAAAAAAAAACAAAAACAAACAACACAAAAAAA......................................... 35 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................AAAAAAAAAAACAAAAAACAAAAAACAAAAACAAAA........................................ 36 2 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................CATGAGTTAAAAACTAAAAAAAAA................................................................... 24 3 14 0.07 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................ATTGAATAAAAGTAAAAATTAAAAA................ 25 3 17 0.06 1 0 0 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................AAAAACAAAAAAAAAAAAA................................................................ 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................AAACAAAAACAAAAAACAAA............................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................ATTAAAAATAAACAAAAAAAAACAAAAAAAAAAAA................................................... 35 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................AAAAAAAAAAAAACAAACACAAAAAAAAACAACAAA......................................... 36 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GATAGTCTTGTAAGGCGTCCTGCATGTCTTCAAACACGGGTTCATGTTTCCATTCTATGGCTGATATAAGGAGAATAATTGGTGGGTGTTGCTGATAGCTAAGATAGCTTCGCGAAGTATTCGATATATATAAAGCAAAGCTTAATTGACGAGCAAGATAGTACGTAATTTTTGTTTTTTTTTTTTTGTTTTTGTTTTTTGTTTTTGTTTTAAGTTATTTTTATTTTTTATTTTTTTGTGTTTTTTACTAT
**************************************************(((.((((.(((............................(((...)))......((((((((....(((.......)))....)))))))).........)))...)))).)))....................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M061
embryo
 M047
female body
 SRR060689
160x9_testes_total
 SRR060678
9x140_testes_total
 SRR060672
9x160_females_carcasses_total
 SRR060663
160_0-2h_embryos_total
 SRR1106730
embryo_16-30h
......CTAGGAAGGCGTCCTGGATG................................................................................................................................................................................................................................. 20 3 1 2.00 2 1 1 0 0 0 0 0 0
..........................................................................................GCTGATAGCTAAGATACTT.............................................................................................................................................. 19 2 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................CTTCGCGAAGGAATCGATA............................................................................................................................. 19 2 3 0.33 1 0 0 0 1 0 0 0 0
.....................................................................AGAGAGTAATCGGTGGGTGTT................................................................................................................................................................. 21 3 3 0.33 1 0 0 1 0 0 0 0 0
......................................................................................................................................................GCGCAAGATCGTACCTAAT.................................................................................. 19 3 6 0.33 2 0 0 1 0 1 0 0 0
.......TAGGAAGGCGTCCTGGATG................................................................................................................................................................................................................................. 19 3 6 0.17 1 1 0 0 0 0 0 0 0
......................................................................................................................................................GCGCAAGATCGTACGTAA................................................................................... 18 2 7 0.14 1 0 0 0 0 0 1 0 0
........................................................ATGGCGGACATATGGAGAA................................................................................................................................................................................ 19 3 17 0.06 1 0 0 0 0 0 0 1 0
........................................................................................................................................................GCAAGATCGTACCTAA................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1
......CTAGGAAGGCGTCCTGGA................................................................................................................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:3296436-3296686 + dvi_5107 CTATCAGAACATTCCGCAGGACGTACAGAAGTTTGTGCCCAAGTACAAAGGTAAGATACCGACTATATTCCT---CTTATTAACCA--------------------------------------------CCCA---CAA------------------------------------------------------------CG-ACT------ATCGATTCTATCGAAGCGCTTCATAAGC----------------------------TATATATATTTCGTTTCGAATTAACTGCT-----CGTTC-------------------------TATCATG-------------------------CA-----------TTAAAAAC-AAAAAAAAAAAAACAAAAACAAAA-------------------AAC-A------------------AAAACAAA-----------------ATTCAATAAA-------------------------AATAAAAAATA------AA--------------AAAA--CA--CAAAAA-ATGA-----T-A
droMoj3 scaffold_6496:21845424-21845685 - CTATCAGAACATTCCGCAGGACGTACAGAAGTTTGTGCCCAAGTACAAAGGTAAGATACCGACTATATTC-T---CTTATTAACCA--------------------------------------------ACCA---CATC--------------------------------------------------GAT---TATCG-ACT------ATCGATTCTATCGAAGCGCTTCATAAAAGTGACATATACATTTAA--------------ATATATTTCGTTATGAATTAACTGCT-----CGTTC-------------------------TATCATG-------------------------CA-----------TTGAAAAAGAA------------------------------------------AATA------------------AAGAAAACAGAAATACAAATAAAAAATTGATTATA-------------------------AAAAAAAAATA---------------------------AAA--TAAAAA-ATGA-----T-A
droGri2 scaffold_15112:2847581-2847853 - CTATCAGAACATTCCGCAGGACGTACAGAAGTTTGTGCCCAAGTACAAAGGTAAGATACCGACTATATTC-TATTCCAATTAACCA--------------------------------------------A----------------TC---AG------------------CCAC----------------------AACG-ATT------CTCGTTCCTATCGAAGCGCTTCATCTGATATACATATACATTTATATATATATATAT------CTTTCGTTTCGAATTAACTGCT-----CGTTCAATT---------------------TATCATA-------------------------CA-----------TTTAAAAAAA-----------------------ATTGAAAAAAT--------AAAGAATATATTACAAAAA------------------AGAAA----------------------AGCA-AAA-----AAAAAGAATGAA---------------------------AAAAC------------ATGA-----T-G
droWil2 scf2_1100000004512:66023-66245 - TTATCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAATACAAAGGTAAGATACCGACTGTT-------------TTCTAAGAAAACACATTTGAAAAAAAATAAACACAAAAACGAATTTAAAAATCGA--------------------------------------------------------------AACAA-TTT------ATCGATTCTATCGAAGCGCTTCATTTGA----------------------------T------CTTTCGTTTC-------------------------------------------ATACAATCGAATCAACAACAACTAAA-----------AAAA----------------------------------------------------AA----------T------------------AAAA-----------------------------------------------------------------------------TAAATAT---ATA--ATATG------------------C-T
dp5 3:2991754-2992057 - CTACCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAATACAAAGGTAAGATACCGGCCTTT-----A-------TTGCCA--------------------------------------------CCCC---C----CAA--TC---AGATCAGATCACAGATCAGATCGCAGCGATCACACGTTCAAGAACTACCAAATT------ATCGATTCAATCGAAGCGCTTCATTTGA----------------------------T------CTTTCGTTTCGAAACAACTAACCGAATCGTTCTACTTAATATGTAGTATATCCATGAAATCGA------------------------------------------------------------------------GTCGAAATTAA--------AACGA------------------ATAATAACAGTAAATGAAT----------------------CACA-AAA-----TGAATGAATGAACAGCG---------------------------AGT--CTGAAT-ACGG-----C-T
droPer2 scaffold_2:3185223-3185526 - CTACCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAATACAAAGGTAAGATACCGGCCTTT-----A-------TTGCCA--------------------------------------------CCCC---C----CAA--TC---AGATCAGATCACAGATCAGATCGCAGCGATCACACGTTCAAGAACTACCAACTT------ATCGATTCAATCGAAGCGCTTCATTTGA----------------------------T------CTTTCGTTTCGAAACAACTAACCGAATCGTTCTACTTAATATGTAGTATATCCATGAAATCGA------------------------------------------------------------------------GTCGAAATTAA--------AACGA------------------ATAATAACAGTAAATGAAT----------------------CACA-AAA-----TGAATGAATGAACAGCG---------------------------AGT--CTGAAT-ACGG-----C-T
droAna3 scaffold_13266:10935791-10936066 + CTACCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAGTATAAAGGTAAGATACCGACTGTT-------------TCGCCA--------------------------------------------TCCGAAACACCAAAAATACTGA-----------------------------TCACACCTT--------ATCA-ATTATC--TCTCGATTTTGTCGAAGCGCTTCATTTGC----------------------------T------CTTTCGTTTCGAATTAACTAAT-----CGTTTT---------------TATTCATTCAATCGAA-------------------------CAAAAAATATGCAT----------ACGA------------AAAAAA-------------------AAT-A------------------ATAATAATATTAAATA-----------------ATAATAAATGCC-AAA----------------------AAAATATAT------A---TAGA--A--TACTCG--TA-ATTA-----T-A
droBip1 scf7180000396547:1528848-1529116 - CTACCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAGTATAAAGGTAAGATACCGACTGTT-------------TCACCA--------------------------------------------TCTGAAACACCAACA-TACTGA-----------------------------TCACACGTT--------ATCA-ATTATC--TCTCGATTTTGTCGAAGCGCTTCATTTGC----------------------------T------CTTTCGTTTCGAATTAACTAAT-----CGTTTT---------------TATTCATTCAACCAAA-------------------------CAAAATA--TGCAT----------ACAA------------------AACAAAA------A-----AATAA----AATATAAAAAAGAA----------------------------------------ATGCC-AAA----------------------AAAATATAT------A---TATACTA--TACTCG--TA-ATTA-----T-A
droKik1 scf7180000302366:422636-422876 - CTACCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAGTACAAAGGTAAGATACCGACTGTT-------------TCTCCA------------------------------A-------------ACCG---AATCAGAA--ACCGA---------------TCAGA---------TCAAACGTTTCAA---TACCA-ATTATGTATATCGATTTTGTCGAAGCGCTTCATTTGC----------------------------T------CTCTCGTTTCGAATTAACTAATC---TCGTTC-------------------------TATAA-A-----------------CATATATGCA-----------TTTA--------------------------------------------------------------------------A-----------------------------------------------------------------------------TGTATATAGAATGAAACATA--CTGAATCGCGCAAAAGCAT
droFic1 scf7180000454066:3353695-3353922 + CTACCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAGTACAAAGGTAAGATACCGACTGTT-------------TCACCA--------------------------------------------TCCG---CATCATAA--ACTGA---------------TC------------TCACACGTTTAAA---AACCA-ATT------ATCGATTCTGTCGAAGCGCTTCATTTGC----------------------------T------CTTTCGTTTCGAATTAACTAAT---ATCGT---------------------ACATACAATCGAA-----------------------------------------------------------------------------AAAAA--------AACGA------------------AAAATA-------------------------------------------------------------------------------T-T---AAAAAACATT--CTGAAACGCGCCA-AGCAT
droEle1 scf7180000491186:172184-172405 + CTACCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAGTACAAAGGTAAGATACCGACTGTT-------------TCACCA--------------------------------------------ACCG---CATCAAAA--ACTGA-----------------------------TCACACGTTTGAA---TACCA-ATT------ATCGATTCTGTCAAAGCGCTTCATTTGC----------------------------T------CTTTCGTTTCGAATTAACTAAT-----------------------------CCATACAATCAAA-------------------------CAAAA----------------------------------------------------GA----------A------------------AATA-----------------------------------------------------------------------------TATATAT---ATAATACATA--CTGAATCGCGCCA-AGCAT
droRho1 scf7180000779777:18554-18781 - CTACCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAGTACAAAGGTAAGATACCGACTGTT-------------TCACCA--------------------------------------------ACCG---CATCAAAA--ACTGA-----------------------------TCACACGTTTGAA---TACCA-ATT------ATCGATTCTGTCGAAGCGCTTCATTTGC----------------------------T------CTTTCGTTTCGAATTAACTAAT-----CGTTCTAT-------------AATCCATACAATCGAA-------------------------CAAA-----------------------------------------------------GA----------A------------------AAAA---------------------------------------------------------------------------------TAT---ATAAAACATT--CTGAATCGCGCCA-AGCAT
droBia1 scf7180000301754:4634074-4634292 + CTACCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAGTACAAAGGTAAGATACCGACTGTT-------------TCACCA--------------------------------------------CCCG---CACCCAAA--ACTGA-----------------------------TCACTCGTTTAAG---TACCG-ATT------ATCGATTCTGTCGAAGCGCTTCATTTGC----------------------------T------CTTTCGTTTCGAATTAACTAAT-----------------------------TCATACGACAA-------------------------------------------------------------------------------AA-A-GA------AACAA------------------AAAA-------------------------------------------------------------------------------TATAT---ATTAAACATT--CCGAACCGCGCCA-AGCA-
droTak1 scf7180000415238:253227-253464 + CTACCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAGTACAAAGGTAAGATACCGACTGTT-------------TCACCA--------------------------------------------CCCG---CATCAAAA--ACTGA-----------------------------TCACACCTTTAAA---TACCA-ATT------ATCGATTCTGTCGAAGCGCTTAATTTGC----------------------------T------CTTTCGTTTCGAATTAACTAAT------------------------------CATACAATCGAA-------------------------CAAT-----------AAAAA--------------------------------AA-A-GA------AAC------------------------------------------------------------------AAA----------------------AAAATATATCTATATAT---CTAAAACATT--CTGAATCGCGCCA-AGCA-
droEug1 scf7180000409672:7350788-7351013 + CTACCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAGTACAAAGGTAAGATACCGACTGTT-------------TCACCA--------------------------------------------CCCG---CATCAAAA--ACTGA-----------------------------TCACACCTTTAAA---TACCA-ATT------ATCGATTCTGTCGAAGCGCTTCATTTGC----------------------------T------CTTTCGTTTCGAATTAACTAAA-----------------------------TCATACAACAA---------------AAAATAAATA-----A-----------------------------------------------------GA----------A------------------AAAA-----------------------------------------------------------------------------TATATAT---ATGAAACATT--CTGAATCGCGCCA-AGCAT
dm3 chr2R:17540019-17540273 + CTACCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAGTACAAAGGTAAGATACCGACTGTT-------------TCATCA--------------------------------------------TCCG---CATCCCAA--ACTGA-----------------------------TCACACTTTTAAA---TGCCA-ATT------ATCGATTCTGTCGAAGCGCTTCATTTGC----------------------------T------CTTTCGTTTCGAATTAACTAAT-----------------------------TCATTCAATCGAA-------------------------CAAAAAA-----------AAAAAA---A------------------AAAAA--------AAATAAAACCA----A--AGAAAAAAGAA----------------------------------------A----A--AGAAAATAATTA------------------------------AATTCAACATT--CTCAATCGCGCCA------
droSim2 2r:18094802-18095049 + dsi_12478 CTACCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAGTACAAAGGTAAGATACCGACTGTT-------------TCATCA--------------------------------------------CCCG---CATCCCAA--ACTGA-----------------------------TCACACTTTTAAA---TGCCA-ATT------ATCGATTCTGTCGAAGCGCTTCATTTGC----------------------------T------CTTTCGTTTCGAATTAACTAAT-----------------------------TCATTCAATCGAA-------------------------CAAAAAA----------------------------------------------------TAATAAAACCA----A--AGAAAAAAGAA----------------------------------------A----A--AGATAATAATTA------------------------------AATTCAGCATT--CTCAATCGCGCCA-AGCAT
droSec2 scaffold_9:866002-866247 + CTACCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAGTACAAAGGTAAGATACCGACTGTT-------------TCATCA--------------------------------------------CCCG---CATCCCAA--ACTGA-----------------------------TCACACTTTTAAA---TGCCA-ATT------ATCGATTCTGTCGAAGCGCTTCATTTGC----------------------------T------CTTTCGTTTCGAATTAACTAAT-----------------------------TCATTCAATCGAA-------------------------CAAAAAA----------------------------------------------------TAATAAAACCA----A--AGAAAAAAGAA----------------------------------------A----A--AGATAATAATTA------------------------------AATTCAGCATT--CTCAATCGCGCCA-AGC--
droYak3 2R:11631868-11632112 - CTACCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAGTACAAAGGTAAGATACCGACTGTT-------------TCGCCA--------------------------------------------CCCG---CATCAAAA--ACTGA-----------------------------TCACACTTTTAAA---TGCCA-ATT------ATCGATTCTGTCGAAGCGCTTCATTTGC----------------------------T------CTTTCGTTTCGAATTAACTAAT-----------------------------TCATTCAACCGTA-------------------------CAAC-----------AAAAAAAAAACCA------------------AACAAAA--------AAAAAACCA----A--TGAAAAAAAAA----------------------------------------A----A--AGAAAAAAA-TA------------------------------AATTCAACATT--C------------------
droEre2 scaffold_4845:11689058-11689297 + CTACCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAGTACAAAGGTAAGATACCGACTGTT-------------TCACCA--------------------------------------------CCCG---CATCAAAA--ACTGA-----------------------------TCACACTTTTAAA---TGCCA-ATT------ATCGATTCTGTCGAAGCGCTTCATTTGC----------------------------T------CTTTCGTTTCGAATTAACTAAT-----------------------------TCATTCAACCGTA-------------------------CAAAAAA--------------------------------------------------------AAAACCA----A--AGAAAA----A----------------------------------------A----A--AGAAAATAATAA------------------------------AATTCAACATT--CTCAATCGCGCCA-AGCAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CTATCAGAACATTCCGCAGGACGTACAGAAGTTTGTGCCCAAGTACAAAGGTAAGATACCGACTATATTCCT---CTTATTAACCA--------------------------------------------CCCA---CAA------------------------------------------------------------CG-ACT------ATCGATTCTATCGAAGCGCTTCATAAGC----------------------------TATATATATTTCGTTTCGAATTAACTGCT-----CGTTC-------------------------TATCATG-------------------------CA-----------TTAAAAAC-AAAAAAAAAAAAACAAAAACAAAA-------------------AAC-A------------------AAAACAAA-----------------ATTCAATAAA-------------------------AATAAAAAATA------AA--------------AAAA--CA--CAAAAA-ATGA-----T-ASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....AGAACATTCCGCAGGACGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAACAAAAACAAAA-------------------AAC-A------------------AAAACAAA-----------------.................................................................................................3511.001000000000000000000000000000000000000000000000000000000000000100
..................GGACGTACAGAAGTTTGTGCCCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000010000000000000000000000000000000
.................AGGACGTACAGAAGTTTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000010000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAACAAA...........................................................................................................................................................................17200.102000000000000000000000000000000000000000000000000000000000000002
...........................................................................................................................................................................................................................................................................................................................................................................................AAAAAC-AAAAAAAAAAAAA...............................................................................................................................................................................19200.051000000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................AAACAAAAACAAAA-------------------AAC-A------------------AA........................................................................................................................20200.051000000000000000000010000000000000000000000000000000000000000000
droMoj3
CTATCAGAACATTCCGCAGGACGTACAGAAGTTTGTGCCCAAGTACAAAGGTAAGATACCGACTATATTC-T---CTTATTAACCA--------------------------------------------ACCA---CATC--------------------------------------------------GAT---TATCG-ACT------ATCGATTCTATCGAAGCGCTTCATAAAAGTGACATATACATTTAA--------------ATATATTTCGTTATGAATTAACTGCT-----CGTTC-------------------------TATCATG-------------------------CA-----------TTGAAAAAGAA------------------------------------------AATA------------------AAGAAAACAGAAATACAAATAAAAAATTGATTATA-------------------------AAAAAAAAATA---------------------------AAA--TAAAAA-ATGA-----T-ASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................AACCA--------------------------------------------ACCA---CATC--------------------------------------------------GAT---TATC.....................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
...........................GAAGTTTGTGCCCAAGTAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.............CCGCAGGACGTACAGAAGTTTGTGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
..................................................................................................................................................................................................................................................................................................AACTGCT-----CGTTC-------------------------TATCATG-------------------------CA-----------TT...................................................................................................................................................................................................2311.001100000
droGri2
CTATCAGAACATTCCGCAGGACGTACAGAAGTTTGTGCCCAAGTACAAAGGTAAGATACCGACTATATTC-TATTCCAATTAACCA--------------------------------------------A----------------TC---AG------------------CCAC----------------------AACG-ATT------CTCGTTCCTATCGAAGCGCTTCATCTGATATACATATACATTTATATATATATATAT------CTTTCGTTTCGAATTAACTGCT-----CGTTCAATT---------------------TATCATA-------------------------CA-----------TTTAAAAAAA-----------------------ATTGAAAAAAT--------AAAGAATATATTACAAAAA------------------AGAAA----------------------AGCA-AAA-----AAAAAGAATGAA---------------------------AAAAC------------ATGA-----T-GSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TTATCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAATACAAAGGTAAGATACCGACTGTT-------------TTCTAAGAAAACACATTTGAAAAAAAATAAACACAAAAACGAATTTAAAAATCGA--------------------------------------------------------------AACAA-TTT------ATCGATTCTATCGAAGCGCTTCATTTGA----------------------------T------CTTTCGTTTC-------------------------------------------ATACAATCGAATCAACAACAACTAAA-----------AAAA----------------------------------------------------AA----------T------------------AAAA-----------------------------------------------------------------------------TAAATAT---ATA--ATATG------------------C-TSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................CCAAATACAAAGGTAAGATACCGACTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00220000
........ACATTCCGCAGGACATACTGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00220000
..ATCAGAACATTCCGCAGGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000
....CAGAACATTCCGCAGGACATACTGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
..................GGACATACTGAAGTTTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001
dp5
CTACCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAATACAAAGGTAAGATACCGGCCTTT-----A-------TTGCCA--------------------------------------------CCCC---C----CAA--TC---AGATCAGATCACAGATCAGATCGCAGCGATCACACGTTCAAGAACTACCAAATT------ATCGATTCAATCGAAGCGCTTCATTTGA----------------------------T------CTTTCGTTTCGAAACAACTAACCGAATCGTTCTACTTAATATGTAGTATATCCATGAAATCGA------------------------------------------------------------------------GTCGAAATTAA--------AACGA------------------ATAATAACAGTAAATGAAT----------------------CACA-AAA-----TGAATGAATGAACAGCG---------------------------AGT--CTGAAT-ACGG-----C-TSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACAGCG---------------------------AGT--CTGAAT-ACGG-----C-T2413.0030100000200
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACAGCG---------------------------AGT--CTGAAT-ACGG-----C-.2313.0030000000300
.....................................................................................................................................................................................................................................................................................................................................TCCATGAAATCGA------------------------------------------------------------------------GTCGAAAT............................................................................................................................................................2112.0020200000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGTAAATGAAT----------------------CACA-AAA-----TGAA................................................................2612.0020000000200
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACAGCG---------------------------AGT--CTGAAT-ACGG-----C-.2411.0010000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACAGCG---------------------------AGT--CTGAAT-ACGG-----C-T2511.0010000000010
.................................TGTGCCCAAATACAAAGGTAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................GCTTCATTTGA----------------------------T------CTTTCGTTTCGA...............................................................................................................................................................................................................................................................................................2411.0010010000000
.............................................................................................................................................................................................................................................................................................GAAACAACTAACCGAATCGTT............................................................................................................................................................................................................................................................................2111.0010100000000
...............................................................................................................................................................ATCACAGATCAGATCGCAGCGAT........................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGAACAGCG---------------------------AGT--CTGAAT-ACGG-----C-.2711.0010000000010
...................................................................................................................................................................................................................................GCGCTTCATTTGA----------------------------T------CTTTCGTTTC.................................................................................................................................................................................................................................................................................................2411.0010100000000
............................................................................................................................................................CAGATCACAGATCAGATCGCAGCGATC.......................................................................................................................................................................................................................................................................................................................................................................................................2711.0010001000000
.............CCGCAGGACATACTGAAGTTTGTGCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100000
................CAGGACATACTGAAGTTTGTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
...CCAGAACATTCCGCAGGACATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000001000
..........ATTCCGCAGGACATACTGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
CTACCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAATACAAAGGTAAGATACCGGCCTTT-----A-------TTGCCA--------------------------------------------CCCC---C----CAA--TC---AGATCAGATCACAGATCAGATCGCAGCGATCACACGTTCAAGAACTACCAACTT------ATCGATTCAATCGAAGCGCTTCATTTGA----------------------------T------CTTTCGTTTCGAAACAACTAACCGAATCGTTCTACTTAATATGTAGTATATCCATGAAATCGA------------------------------------------------------------------------GTCGAAATTAA--------AACGA------------------ATAATAACAGTAAATGAAT----------------------CACA-AAA-----TGAATGAATGAACAGCG---------------------------AGT--CTGAAT-ACGG-----C-TSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
CTACCAGAACATTCCGCAGGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2215.005500000
.................................................................................................................................................................CACAGATCAGATCGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................1813.003300000
...............................................................................................................................................................ATCACAGATCAGATCGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................2012.002200000
....CAGAACATTCCGCAGGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
......................................................................................................................................................................................................................................................................................................AACCGAATCGTTCTACTT......................................................................................................................................................................................................................................................................1811.001100000
droAna3
CTACCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAGTATAAAGGTAAGATACCGACTGTT-------------TCGCCA--------------------------------------------TCCGAAACACCAAAAATACTGA-----------------------------TCACACCTT--------ATCA-ATTATC--TCTCGATTTTGTCGAAGCGCTTCATTTGC----------------------------T------CTTTCGTTTCGAATTAACTAAT-----CGTTTT---------------TATTCATTCAATCGAA-------------------------CAAAAAATATGCAT----------ACGA------------AAAAAA-------------------AAT-A------------------ATAATAATATTAAATA-----------------ATAATAAATGCC-AAA----------------------AAAATATAT------A---TAGA--A--TACTCG--TA-ATTA-----T-ASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................ATC--TCTCGATTTTGTCGAAG..........................................................................................................................................................................................................................................................................................................................................................2011.001001000
.....................CATACTGAAGTTTGTGCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.....AGAACATTCCGCAGGACATACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.......AACATTCCGCAGGACATACTGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
droBip1
CTACCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAGTATAAAGGTAAGATACCGACTGTT-------------TCACCA--------------------------------------------TCTGAAACACCAACA-TACTGA-----------------------------TCACACGTT--------ATCA-ATTATC--TCTCGATTTTGTCGAAGCGCTTCATTTGC----------------------------T------CTTTCGTTTCGAATTAACTAAT-----CGTTTT---------------TATTCATTCAACCAAA-------------------------CAAAATA--TGCAT----------ACAA------------------AACAAAA------A-----AATAA----AATATAAAAAAGAA----------------------------------------ATGCC-AAA----------------------AAAATATAT------A---TATACTA--TACTCG--TA-ATTA-----T-ASizeHit CountTotal NormTotal
No Reads
droKik1
CTACCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAGTACAAAGGTAAGATACCGACTGTT-------------TCTCCA------------------------------A-------------ACCG---AATCAGAA--ACCGA---------------TCAGA---------TCAAACGTTTCAA---TACCA-ATTATGTATATCGATTTTGTCGAAGCGCTTCATTTGC----------------------------T------CTCTCGTTTCGAATTAACTAATC---TCGTTC-------------------------TATAA-A-----------------CATATATGCA-----------TTTA--------------------------------------------------------------------------A-----------------------------------------------------------------------------TGTATATAGAATGAAACATA--CTGAATCGCGCAAAAGCATSizeHit CountTotal NormTotal
No Reads
droFic1
CTACCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAGTACAAAGGTAAGATACCGACTGTT-------------TCACCA--------------------------------------------TCCG---CATCATAA--ACTGA---------------TC------------TCACACGTTTAAA---AACCA-ATT------ATCGATTCTGTCGAAGCGCTTCATTTGC----------------------------T------CTTTCGTTTCGAATTAACTAAT---ATCGT---------------------ACATACAATCGAA-----------------------------------------------------------------------------AAAAA--------AACGA------------------AAAATA-------------------------------------------------------------------------------T-T---AAAAAACATT--CTGAAACGCGCCA-AGCATSizeHit CountTotal NormTotal
No Reads
droEle1
CTACCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAGTACAAAGGTAAGATACCGACTGTT-------------TCACCA--------------------------------------------ACCG---CATCAAAA--ACTGA-----------------------------TCACACGTTTGAA---TACCA-ATT------ATCGATTCTGTCAAAGCGCTTCATTTGC----------------------------T------CTTTCGTTTCGAATTAACTAAT-----------------------------CCATACAATCAAA-------------------------CAAAA----------------------------------------------------GA----------A------------------AATA-----------------------------------------------------------------------------TATATAT---ATAATACATA--CTGAATCGCGCCA-AGCATSizeHit CountTotal NormTotal
No Reads
droRho1
CTACCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAGTACAAAGGTAAGATACCGACTGTT-------------TCACCA--------------------------------------------ACCG---CATCAAAA--ACTGA-----------------------------TCACACGTTTGAA---TACCA-ATT------ATCGATTCTGTCGAAGCGCTTCATTTGC----------------------------T------CTTTCGTTTCGAATTAACTAAT-----CGTTCTAT-------------AATCCATACAATCGAA-------------------------CAAA-----------------------------------------------------GA----------A------------------AAAA---------------------------------------------------------------------------------TAT---ATAAAACATT--CTGAATCGCGCCA-AGCATSizeHit CountTotal NormTotal
No Reads
droBia1
CTACCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAGTACAAAGGTAAGATACCGACTGTT-------------TCACCA--------------------------------------------CCCG---CACCCAAA--ACTGA-----------------------------TCACTCGTTTAAG---TACCG-ATT------ATCGATTCTGTCGAAGCGCTTCATTTGC----------------------------T------CTTTCGTTTCGAATTAACTAAT-----------------------------TCATACGACAA-------------------------------------------------------------------------------AA-A-GA------AACAA------------------AAAA-------------------------------------------------------------------------------TATAT---ATTAAACATT--CCGAACCGCGCCA-AGCA-SizeHit CountTotal NormTotal
No Reads
droTak1
CTACCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAGTACAAAGGTAAGATACCGACTGTT-------------TCACCA--------------------------------------------CCCG---CATCAAAA--ACTGA-----------------------------TCACACCTTTAAA---TACCA-ATT------ATCGATTCTGTCGAAGCGCTTAATTTGC----------------------------T------CTTTCGTTTCGAATTAACTAAT------------------------------CATACAATCGAA-------------------------CAAT-----------AAAAA--------------------------------AA-A-GA------AAC------------------------------------------------------------------AAA----------------------AAAATATATCTATATAT---CTAAAACATT--CTGAATCGCGCCA-AGCA-SizeHit CountTotal NormTotal
No Reads
droEug1
CTACCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAGTACAAAGGTAAGATACCGACTGTT-------------TCACCA--------------------------------------------CCCG---CATCAAAA--ACTGA-----------------------------TCACACCTTTAAA---TACCA-ATT------ATCGATTCTGTCGAAGCGCTTCATTTGC----------------------------T------CTTTCGTTTCGAATTAACTAAA-----------------------------TCATACAACAA---------------AAAATAAATA-----A-----------------------------------------------------GA----------A------------------AAAA-----------------------------------------------------------------------------TATATAT---ATGAAACATT--CTGAATCGCGCCA-AGCATSizeHit CountTotal NormTotal
No Reads
dm3
CTACCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAGTACAAAGGTAAGATACCGACTGTT-------------TCATCA--------------------------------------------TCCG---CATCCCAA--ACTGA-----------------------------TCACACTTTTAAA---TGCCA-ATT------ATCGATTCTGTCGAAGCGCTTCATTTGC----------------------------T------CTTTCGTTTCGAATTAACTAAT-----------------------------TCATTCAATCGAA-------------------------CAAAAAA-----------AAAAAA---A------------------AAAAA--------AAATAAAACCA----A--AGAAAAAAGAA----------------------------------------A----A--AGAAAATAATTA------------------------------AATTCAACATT--CTCAATCGCGCCA------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................AAAAAA-----------AAAAAA---A------------------AAAAA--------AAA....................................................................................................................................................21204.559100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................AAAAA-----------AAAAAA---A------------------AAAAA--------AAA....................................................................................................................................................20203.456900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000690000000000000000000000000000
.............................AGTTTGTGCCCAAGTACAAAGGCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................TTCTGTCGAAGCGCTTCATTTGC----------------------------T------CTT........................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TTCGAATTAACTAAT-----------------------------TCATT...................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................AAAAA-----------AAAAAA---A------------------AAAAA--------AAATAAAAC..............................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................AAAAAA-----------AAAAAA---A------------------AAAAA--------AAATAAAA...............................................................................................................................................2661.3380000000000000000000000000000000000010000000000000000000000000000000000000000000010000000050000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................GTTTGTGCCCAAGTACAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA----------------------------------------A----A--AGAAAATAATTA------------------------------AAT.............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CCAAGTACAAAGGTAAGATACCGACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..........................................................................................................................................................................................................................TCTGTCGAAGCGCTTCATTTGC----------------------------T------CT.........................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAACCA----A--AGAAAAAAGA...........................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................AGGACATACTGAAGTTTGTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................AAAAAA-----------AAAAAA---A------------------AAAAA--------AAATAAAAC..............................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................A----A--AGAAAAAAGAA----------------------------------------A----A--AGA.......................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
...................GACATACTGAAGTTTGTGCCCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ACCA----A--AGAAAAAAGAA----------------------------------------A----A--AGA.......................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..................GGACATACTGAAGTTTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
......GAACATTCCGCAGGACATACTGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................TTTAAA---TGCCA-ATT------ATCGATTCTGT...............................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......GAACATTCCGCAGGACATACTGAAGTTTGTGCCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3511.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CATTCCGCAGGACATACTGAAGTTTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................TCTGTCGAAGCGCTTCATTTGC----------------------------T------CTTTC......................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TGAAGTTTGTGCCCAAGTACAAAGGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................TTCATTTGC----------------------------T------CTTTCGTTTCGA...............................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
.......................................................ATACCGACTGTT-------------TCATCA--------------------------------------------TCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................A-ATT------ATCGATTCTGTCGAAGCGCT......................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................AAGCGCTTCATTTGC----------------------------T------CTTTC......................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................CGATTCTGTCGAAGCGCTTCAT..................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................A--AGAAAAAAGAA----------------------------------------A----A--AGAA......................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................TAAT-----------------------------TCATTCAATCGAA-------------------------CAAAAAA-----------AA..............................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
CTACCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAGTACAAAGGTAAGATACCGACTGTT-------------TCATCA--------------------------------------------CCCG---CATCCCAA--ACTGA-----------------------------TCACACTTTTAAA---TGCCA-ATT------ATCGATTCTGTCGAAGCGCTTCATTTGC----------------------------T------CTTTCGTTTCGAATTAACTAAT-----------------------------TCATTCAATCGAA-------------------------CAAAAAA----------------------------------------------------TAATAAAACCA----A--AGAAAAAAGAA----------------------------------------A----A--AGATAATAATTA------------------------------AATTCAGCATT--CTCAATCGCGCCA-AGCATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....AGAACATTCCGCAGGACATACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200200000000000000
.....AGAACATTCCGCAGGACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200200000000000000
..............CGCAGGACATACTGAAGTTTGTGCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
..........................................................CCGACTGTT-------------TCATCA--------------------------------------------CCCG---C....................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................ATCGAA-------------------------CAAAAAA----------------------------------------------------TAATAAAACC.............................................................................................................................................2311.00101000000000000000
......................................................GATACCGACTGTT-------------TCATCA--------------------------------------------CCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
........ACATTCCGCAGGACATACTGAAGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
..........................................GTACAAAGGTAAGATACCGACTGTT-------------T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
........ACATTCCGCAGGACATACTGAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
CTACCAGAACATTCCGCAGGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
......................................................................................................................................................................................................GCCA-ATT------ATCGATTCTGT...............................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
droSec2
CTACCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAGTACAAAGGTAAGATACCGACTGTT-------------TCATCA--------------------------------------------CCCG---CATCCCAA--ACTGA-----------------------------TCACACTTTTAAA---TGCCA-ATT------ATCGATTCTGTCGAAGCGCTTCATTTGC----------------------------T------CTTTCGTTTCGAATTAACTAAT-----------------------------TCATTCAATCGAA-------------------------CAAAAAA----------------------------------------------------TAATAAAACCA----A--AGAAAAAAGAA----------------------------------------A----A--AGATAATAATTA------------------------------AATTCAGCATT--CTCAATCGCGCCA-AGC--SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................TACTGAAGTTTGTGCCCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................A----A--AGAAAAAAGAA----------------------------------------A----A--AGAA......................................................................19200.0510001
droYak3
CTACCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAGTACAAAGGTAAGATACCGACTGTT-------------TCGCCA--------------------------------------------CCCG---CATCAAAA--ACTGA-----------------------------TCACACTTTTAAA---TGCCA-ATT------ATCGATTCTGTCGAAGCGCTTCATTTGC----------------------------T------CTTTCGTTTCGAATTAACTAAT-----------------------------TCATTCAACCGTA-------------------------CAAC-----------AAAAAAAAAACCA------------------AACAAAA--------AAAAAACCA----A--TGAAAAAAAAA----------------------------------------A----A--AGAAAAAAA-TA------------------------------AATTCAACATT--C------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................CATACTGAAGTTTGTGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200200000000
.....AGAACATTCCGCAGGACAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00220000000000
.....................................................AGATACCGACTGTT-------------TCGCCA--------------------------------------------CCCG---CAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
........................ACTGAAGTTTGTGCCCAAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.....AGAACATTCCGCAGGACATACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
........ACATTCCGCAGGACATACTGAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.........................................................................................................................................................................................................................TTCTGTCGAAGCGCTTCATTTGC----------------------------T------...........................................................................................................................................................................................................................................................................................................2411.00101000000000
..................................................................................................................................................................................................................................AGCGCTTCATTTGC----------------------------T------CTTTCGTTTCGA...............................................................................................................................................................................................................................................................................................2711.00101000000000
droEre2
CTACCAGAACATTCCGCAGGACATACTGAAGTTTGTGCCCAAGTACAAAGGTAAGATACCGACTGTT-------------TCACCA--------------------------------------------CCCG---CATCAAAA--ACTGA-----------------------------TCACACTTTTAAA---TGCCA-ATT------ATCGATTCTGTCGAAGCGCTTCATTTGC----------------------------T------CTTTCGTTTCGAATTAACTAAT-----------------------------TCATTCAACCGTA-------------------------CAAAAAA--------------------------------------------------------AAAACCA----A--AGAAAA----A----------------------------------------A----A--AGAAAATAATAA------------------------------AATTCAACATT--CTCAATCGCGCCA-AGCATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................GGACATACTGAAGTTTGTGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
......................................................................................................................................................................................................GCCA-ATT------ATCGATTCTGTCGAA...........................................................................................................................................................................................................................................................................................................................................................2211.0010001000

Generated: 05/16/2015 at 08:06 PM