ID:

dvi_4941

 Coordinate:

scaffold_12875:1851197-1851347 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-1.9 -1.8 -1.6

Flybase annnotation

exon [dvir_GLEANR_6683:10]; CDS [Dvir\GJ21316-cds]; intron [Dvir\GJ21316-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAATGTAATTTTCTCTATCCTCTATCCTTTATTAACAATCGACACACACATTTCGAACACATAAAACATAATGCTCGATCCGAAATATGAAATCGCATAAACTCATTGTAATCAATCCCAACTCCTCATGCCTAATCCACGATAATTGTCAAAAACTACGTATTTCCGCCGACTCCTTCCATGATGAATGGCAAATAAAAGGGACTTTCGTTTTAAGCACGGACGTATGGAGAATATGTTGAATCGGAGTA
*************************************************************......((((((....((.(((.........))).)).....))))))..******************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060679
140x9_testes_total
 SRR060681
Argx9_testes_total
 SRR060678
9x140_testes_total
 SRR060670
9_testes_total
 M047
female body
 M027
male body		 SRR060655
9x160_testes_total
 SRR060680
 9xArg_testes_total
 SRR060683
160_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060689
160x9_testes_total
 SRR060682
9x140_0-2h_embryos_total
 V116
male body		 SRR060662
9x160_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060660
Argentina_ovaries_total
.............................................................TAAAACATAATGCTCGATCCG......................................................................................................................................................................... 21 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................AAATCGCATAAACTCATTGTAA............................................................................................................................................ 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CTTTCGTTTTAAGCACGGACG.......................... 21 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................ACTTTCGTTTTAAGCACGGAC........................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ATGGACGTATGGAGAATATGTT........... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TTAAGCATGGACGTATGGAGA.................. 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................GCAAATAAAAGGGACTTTCGT........................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AAACATAATGCTCGATCCGA........................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................ACACATGAAACATCATGCTCG.............................................................................................................................................................................. 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TGGACGTATGGAGAATATGTT........... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AAGCACGGACGTATGGAGAA................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CTCGGACTTTCGTTTTAAGCACGGA............................ 25 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................ACATAATGCTCGATCCGAAAT..................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................ACATAATGCTCGATCCGAAATTTT.................................................................................................................................................................. 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AGGGACTTTCGTTTTAAGCAC............................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................CGATCCGAAATATGAGGTCGC........................................................................................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CCTCATGCCTAATCCACGATA........................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................AATCCCAACTCCTCATGCCTA..................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................CAACTCCTCATGCCTAATCCA................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GAACACATAAAACATAATGCT................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................CTACGTATTTCCGCCGACTCC........................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TAACAATCGACACACACATTTCGAACACA.............................................................................................................................................................................................. 29 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CGTATGGAGAGTGTGTTGAAT....... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TCCGCCGACTCCTTCCATGAT.................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AACTCCTCATGCCTAATCCAC............................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................GTCAAAAACTACGTATTTCCG................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CGGACGTATGGAGAATATGTT........... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GGACTTTCGTTTTAGGCACGG............................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................TAATGCTCGATCCGAAATATG.................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................ATCATTGTCAAAAACCACG........................................................................................... 19 2 3 0.67 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0
..................CCTGTATCCTTTATTACCAGT.................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................ATGGAGAAGTTGTTGAATC...... 19 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................CTTTATTAGCAATCGACCCAT............................................................................................................................................................................................................ 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................GAGAATGTGTTGAGTCGCAGT. 21 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................AGCAAGGGCGCATGGAGAAT................ 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................AGAGGGACTATCGTTTTCA................................... 19 3 15 0.13 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0
.......................................................................................................................................................................................................AGGGACTATCGGTTCAAGC................................. 19 3 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................ATTGTCAAAAACCACGAATC....................................................................................... 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................AGAGGGACTTTCGGTTTCA................................... 19 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................AGGGACTATCGGTTTCAG.................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................................................................................GACGTATGGTGATCATGTT........... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TTTACATTAAAAGAGATAGGAGATAGGAAATAATTGTTAGCTGTGTGTGTAAAGCTTGTGTATTTTGTATTACGAGCTAGGCTTTATACTTTAGCGTATTTGAGTAACATTAGTTAGGGTTGAGGAGTACGGATTAGGTGCTATTAACAGTTTTTGATGCATAAAGGCGGCTGAGGAAGGTACTACTTACCGTTTATTTTCCCTGAAAGCAAAATTCGTGCCTGCATACCTCTTATACAACTTAGCCTCAT
********************************************************************************************************************************************......((((((....((.(((.........))).)).....))))))..************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR060681
Argx9_testes_total
 SRR060679
140x9_testes_total
 SRR060655
9x160_testes_total
 SRR060670
9_testes_total
 SRR060689
160x9_testes_total
 SRR060678
9x140_testes_total
 SRR060680
 9xArg_testes_total
 SRR060657
140_testes_total
 V116
male body		 SRR060659
Argentina_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 M047
female body
 SRR060685
9xArg_0-2h_embryos_total
 V053
head
 SRR060662
9x160_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR1106730
embryo_16-30h
.........................................................................................................................................................TGGATGCATAATGGCGCC................................................................................ 18 3 13 3.31 43 3 0 0 0 0 0 0 0 1 0 14 7 7 5 1 0 2 1 1 1 0
.................................TTGTTAGCTGTGTGTGTAAAGC.................................................................................................................................................................................................... 22 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TAGCTGTGTGTGTAAAGCTTG................................................................................................................................................................................................. 21 0 1 3.00 3 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................GTATTACGAGCTAGGCTTTAT.................................................................................................................................................................... 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CGTGCCTGCATACCTCTTAT............... 20 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................AGGCGGCTGAGGAAGGTACTA.................................................................. 21 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................TTAGGGTTGAGGAGTACGGAT..................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................AGTTAGGGTTGAGGAGTGCGGG...................................................................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................TGTGTGTAAAGCTTGTGTATT........................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GCGGAGTACGGATTAGGTGCT............................................................................................................. 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................GTGTATTTTGTATTACGAGC.............................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGTTAGCTGTGTGTGTAAAG..................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................CTGTGTGTGTAAAGCTTGTGT.............................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........AAAAGCGGTAGGAGATAGGAA.............................................................................................................................................................................................................................. 21 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TAGCGTGTTTGAGTAACATTA........................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GTTCGTGCCTGCATACCTCTT................. 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................GATTAGGTGCTATTAACAGTT................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CGTGCCTGCATACCTCTTATA.............. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TTGTATTACGAGCTAGGCTTT...................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................GTGTGTGTAAAGCTTGTGTAT............................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TTCGTGCCTGCATACCTCTTA................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................GGAAATAGTTGTTAGCTGTG.............................................................................................................................................................................................................. 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TTCCCTGAAAGCAAAATTCGT................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............GGTAGGAGATAGGAAATAATT........................................................................................................................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................GAGGAAGGTACTACTTACCGT.......................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TTCCCTGGGAGCAAAATTCGT................................ 21 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................GGAGTACGGGTTAGGTGCTAT........................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................ATTGTTAGCTGTGTGTGTAGA...................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................GGAAGGTACTACTTACCGTTT........................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TATTTGAGTGACGTTAGTTAG...................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................GCTTTATACTTTAGCGTATTT...................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................AACGTTAGTTAGGGTTGAGGAGT........................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................GATAGGAAATAATTGTTAGCT................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TTAGGTGCTATTAACAGTTTT................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TTAGTTAGGGTTGAGGAGTAC......................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................GTACGGGTTAGGTGCTATTAAC....................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............GATAGGAGATAGGAAATAGTT........................................................................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TTTATTTTCCCTGAAAGCAAA...................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CCTGCATACCTCTTATACAAC.......... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AGCGTATTTGAGTAACATTAG.......................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................TGTGTGTTTTGTATTACGAGC.............................................................................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................TTAGCTGTGTGTGTAAAGCTT.................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TATTTGAGTGACATTAGTTAG...................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TCGTGCCTGCATACCTCTTAT............... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................GTGTGTAAAGCTTGTGTAT............................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................TAGGAGGTAGGAAATAATTGT...................................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GAGGAGTACGGGTTAGGTGCT............................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TGTGTAAAGCTTGTGTATTTTCTA...................................................................................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........AGAGGTAGGAGGTAGGAAATA........................................................................................................................................................................................................................... 21 2 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TGGATGCATAATGGCGCCT............................................................................... 19 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................ATAGGAGATAATTGTAAGCTT................................................................................................................................................................................................................ 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........AAAAAAGATAGGAGATAAG................................................................................................................................................................................................................................ 19 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................CCGTCCCTGCATACC..................... 15 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...............................TATTGTGAGCTGTGTGTG.......................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12875:1851147-1851397 + dvi_4941 AAATGTAATTTTCTCTATCCTCTATCCTTTATTAACAATC------------------------------------GACACACACATTTCGAACACATAAAACATAATGCTCGATCCGAA----ATATG--AAATCGCATAAACTCATTGTAATC-AATCCCAACT--CCTCATGCCTAATCCACGATAATTGTCAAAAACTACGTATTTCCGCCGACTCCTTCCATGA-TGAATGGCAAATAAAAGGGACTTTCGTTTTAAGCACGGACGTATGGAGAATATGTTGA-------ATCGGAGTA
droMoj3 scaffold_6496:13641111-13641375 - AAATGTAATTCTCTCTATCCTCTATCCTCTATTAACACACACAACATCCATACATACCCACACCCACACACACACACACACACACATT--------ATAAA--ACAATGTTCGATCTGTAACAAATTTGTCAATTTATCCATATTCATTGTTAACAAATCCCAAATTCCCTCATGCCAAATCCACAAAAATTGTGTTCGACTACG-----------------------ATTAAAAAACAA--AAAAGGGAAATTCGTTTTAAGCATGA---TTTGGACAAGAGATCGAGCGCGAAAAGGGAG-A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AAATGTAATTTTCTCTATCCTCTATCCTTTATTAACAATC------------------------------------GACACACACATTTCGAACACATAAAACATAATGCTCGATCCGAA----ATATG--AAATCGCATAAACTCATTGTAATC-AATCCCAACT--CCTCATGCCTAATCCACGATAATTGTCAAAAACTACGTATTTCCGCCGACTCCTTCCATGA-TGAATGGCAAATAAAAGGGACTTTCGTTTTAAGCACGGACGTATGGAGAATATGTTGA-------ATCGGAGTASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................TAAAACATAATGCTCGATCCG..........................................................................................................................................................................................2113.003000000000000000000000000000002010000000000000000000000000000000
...................................................................................................................................AAATCGCATAAACTCATTGTAA.......................................................................................................................................................2212.002000000000000000000000000000002000000000000000000000000000000000
..........................................................................................................................................................................................................................................................CTTTCGTTTTAAGCACGGACG.................................2112.002000000000000000000000000000001000000000100000000000000000000000
.........................................................................................................................................................................................................................................................ACTTTCGTTTTAAGCACGGAC..................................2111.001100000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................GCAAATAAAAGGGACTTTCGT...............................................2111.001000000000000000000000000000000010000000000000000000000000000000
...................................................................................................AAACATAATGCTCGATCCGA.........................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................AAGCACGGACGTATGGAGAA........................2011.001000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................ACATAATGCTCGATCCGAA----AT..................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................AGGGACTTTCGTTTTAAGCAC......................................2111.001000000000000000000001000000000000000000000000000000000000000000
........................................................................................................................................................................CCTCATGCCTAATCCACGATA...................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................AATCCCAACT--CCTCATGCCTA.............................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................CAACT--CCTCATGCCTAATCCA........................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
..........................................................................................GAACACATAAAACATAATGCT.................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................................................CTACGTATTTCCGCCGACTCC...................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
................................TAACAATC------------------------------------GACACACACATTTCGAACACA...............................................................................................................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................TCCGCCGACTCCTTCCATGA-T.........................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................AACT--CCTCATGCCTAATCCAC.......................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
................................................................................................................................................................................................GTCAAAAACTACGTATTTCCG...........................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................CGGACGTATGGAGAATATGTT..................2111.001000001000000000000000000000000000000000000000000000000000000000
........................................................................................................TAATGCTCGATCCGAA----ATATG--.............................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
droMoj3
AAATGTAATTCTCTCTATCCTCTATCCTCTATTAACACACACAACATCCATACATACCCACACCCACACACACACACACACACACATT--------ATAAA--ACAATGTTCGATCTGTAACAAATTTGTCAATTTATCCATATTCATTGTTAACAAATCCCAAATTCCCTCATGCCAAATCCACAAAAATTGTGTTCGACTACG-----------------------ATTAAAAAACAA--AAAAGGGAAATTCGTTTTAAGCATGA---TTTGGACAAGAGATCGAGCGCGAAAAGGGAG-ASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads

Generated: 05/17/2015 at 04:20 AM